Query psy15703
Match_columns 84
No_of_seqs 107 out of 1612
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 19:20:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.7 4.7E-17 1E-21 87.9 8.5 83 1-84 16-98 (160)
2 KOG0027|consensus 99.6 3.3E-15 7.2E-20 80.7 8.7 83 2-84 5-91 (151)
3 cd05022 S-100A13 S-100A13: S-1 99.6 3.4E-15 7.3E-20 74.2 7.2 69 3-71 6-77 (89)
4 PF13499 EF-hand_7: EF-hand do 99.6 8.1E-15 1.8E-19 69.1 7.7 62 6-67 1-66 (66)
5 cd05027 S-100B S-100B: S-100B 99.6 2.1E-14 4.6E-19 71.3 8.2 69 3-71 6-81 (88)
6 COG5126 FRQ1 Ca2+-binding prot 99.6 4.8E-14 1E-18 76.3 8.3 67 3-69 90-156 (160)
7 KOG0028|consensus 99.5 1.1E-13 2.5E-18 74.2 8.1 83 2-84 30-112 (172)
8 KOG0027|consensus 99.5 1.1E-13 2.3E-18 74.8 8.2 66 4-69 84-149 (151)
9 PTZ00183 centrin; Provisional 99.5 2.7E-13 5.8E-18 73.2 9.7 82 2-83 14-95 (158)
10 PTZ00184 calmodulin; Provision 99.5 4.6E-13 1E-17 71.5 8.9 81 2-82 8-88 (149)
11 cd05025 S-100A1 S-100A1: S-100 99.5 5.3E-13 1.1E-17 66.8 8.2 68 4-71 8-82 (92)
12 smart00027 EH Eps15 homology d 99.5 5.6E-13 1.2E-17 67.1 8.2 67 2-70 7-73 (96)
13 cd00213 S-100 S-100: S-100 dom 99.5 3.7E-13 8E-18 66.8 7.5 70 2-71 5-81 (88)
14 cd05031 S-100A10_like S-100A10 99.5 5.6E-13 1.2E-17 66.9 7.8 67 4-70 7-80 (94)
15 cd05026 S-100Z S-100Z: S-100Z 99.5 6.9E-13 1.5E-17 66.5 7.9 68 4-71 9-83 (93)
16 cd05029 S-100A6 S-100A6: S-100 99.5 9.8E-13 2.1E-17 65.3 8.0 69 3-71 8-81 (88)
17 KOG0031|consensus 99.5 1E-12 2.3E-17 70.2 8.5 79 2-84 29-107 (171)
18 cd00052 EH Eps15 homology doma 99.4 2.5E-12 5.3E-17 60.5 7.0 62 8-71 2-63 (67)
19 PF13833 EF-hand_8: EF-hand do 99.4 3.8E-12 8.3E-17 57.8 7.0 52 18-69 1-53 (54)
20 cd00051 EFh EF-hand, calcium b 99.4 7.7E-12 1.7E-16 57.4 7.4 61 7-67 2-62 (63)
21 cd05023 S-100A11 S-100A11: S-1 99.4 1.3E-11 2.8E-16 61.4 8.0 69 3-71 7-82 (89)
22 KOG0037|consensus 99.3 4.7E-11 1E-15 67.1 8.3 70 3-72 122-191 (221)
23 PF14658 EF-hand_9: EF-hand do 99.3 4.9E-11 1.1E-15 55.7 6.9 60 10-69 3-64 (66)
24 KOG0028|consensus 99.3 5E-11 1.1E-15 64.2 7.7 67 3-69 104-170 (172)
25 cd00252 SPARC_EC SPARC_EC; ext 99.3 8.2E-11 1.8E-15 61.1 7.6 62 3-68 46-107 (116)
26 PTZ00183 centrin; Provisional 99.2 1.1E-10 2.5E-15 62.9 8.2 65 5-69 90-154 (158)
27 cd05030 calgranulins Calgranul 99.2 8.3E-11 1.8E-15 58.4 6.9 70 3-72 6-82 (88)
28 PTZ00184 calmodulin; Provision 99.2 1.1E-10 2.3E-15 62.3 7.8 64 5-68 84-147 (149)
29 PLN02964 phosphatidylserine de 99.2 2.5E-10 5.5E-15 73.1 8.7 78 2-84 140-221 (644)
30 KOG0041|consensus 99.2 1.8E-10 3.9E-15 64.2 6.8 71 2-72 96-166 (244)
31 KOG0030|consensus 99.2 1.9E-10 4.1E-15 60.7 6.4 80 2-81 8-91 (152)
32 KOG0034|consensus 99.2 5.1E-10 1.1E-14 62.4 7.8 66 5-70 104-176 (187)
33 KOG0031|consensus 99.1 3.5E-09 7.7E-14 56.9 8.2 68 2-69 98-165 (171)
34 cd05024 S-100A10 S-100A10: A s 99.0 2E-08 4.4E-13 49.9 8.3 67 4-71 7-78 (91)
35 KOG0040|consensus 99.0 4.8E-09 1E-13 71.8 7.7 83 2-84 2250-2340(2399)
36 KOG0044|consensus 98.9 8.9E-09 1.9E-13 57.6 6.6 67 5-71 64-130 (193)
37 PLN02964 phosphatidylserine de 98.9 2.4E-08 5.2E-13 64.3 8.2 65 6-70 180-244 (644)
38 KOG0044|consensus 98.9 1.4E-08 3E-13 56.9 6.0 65 5-69 100-175 (193)
39 KOG0034|consensus 98.8 3.7E-08 8E-13 55.0 7.5 79 2-84 30-110 (187)
40 PF00036 EF-hand_1: EF hand; 98.8 9.3E-09 2E-13 40.9 3.6 26 7-32 2-27 (29)
41 KOG0030|consensus 98.8 2.7E-08 5.8E-13 52.7 6.2 63 5-68 88-150 (152)
42 PF12763 EF-hand_4: Cytoskelet 98.8 2.3E-07 5.1E-12 47.4 8.5 64 2-68 7-70 (104)
43 PF00036 EF-hand_1: EF hand; 98.8 3E-08 6.4E-13 39.4 4.1 28 42-69 1-28 (29)
44 PF14788 EF-hand_10: EF hand; 98.8 1.2E-07 2.7E-12 42.1 6.2 50 21-70 1-50 (51)
45 KOG0037|consensus 98.7 1.8E-07 3.9E-12 52.9 7.7 66 5-70 57-123 (221)
46 PF13405 EF-hand_6: EF-hand do 98.7 3.5E-08 7.5E-13 39.8 3.6 30 6-35 1-31 (31)
47 KOG0036|consensus 98.7 2.4E-07 5.1E-12 56.8 7.8 68 3-70 12-80 (463)
48 KOG0036|consensus 98.7 1.9E-07 4.2E-12 57.2 7.2 67 3-69 80-146 (463)
49 PRK12309 transaldolase/EF-hand 98.5 8E-07 1.7E-11 54.7 6.6 55 4-71 333-387 (391)
50 KOG0377|consensus 98.5 1.6E-06 3.4E-11 54.0 7.4 66 5-70 547-616 (631)
51 PF13202 EF-hand_5: EF hand; P 98.3 1.3E-06 2.9E-11 33.4 3.1 22 8-29 2-23 (25)
52 KOG0038|consensus 98.3 3.7E-06 8E-11 45.3 5.5 63 7-69 110-177 (189)
53 KOG0046|consensus 98.3 6.4E-06 1.4E-10 52.1 7.0 70 2-72 16-88 (627)
54 PF10591 SPARC_Ca_bdg: Secrete 98.3 5.1E-07 1.1E-11 46.8 1.9 60 4-65 53-112 (113)
55 PF13202 EF-hand_5: EF hand; P 98.2 6.1E-06 1.3E-10 31.6 3.7 25 43-67 1-25 (25)
56 PF13405 EF-hand_6: EF-hand do 98.0 1.9E-05 4.1E-10 31.6 3.8 26 43-68 2-27 (31)
57 KOG4223|consensus 98.0 4.9E-05 1.1E-09 45.5 6.2 69 4-72 162-231 (325)
58 KOG4223|consensus 97.9 1.6E-05 3.4E-10 47.6 3.7 66 9-74 245-310 (325)
59 smart00054 EFh EF-hand, calciu 97.7 6.2E-05 1.3E-09 28.5 2.9 25 8-32 3-27 (29)
60 PF09279 EF-hand_like: Phospho 97.7 0.00027 5.8E-09 34.5 5.6 65 6-71 1-71 (83)
61 smart00054 EFh EF-hand, calciu 97.6 0.00018 3.9E-09 27.1 3.2 27 43-69 2-28 (29)
62 PF13833 EF-hand_8: EF-hand do 97.6 0.00022 4.7E-09 31.9 3.8 29 5-33 25-53 (54)
63 KOG0377|consensus 97.4 0.0017 3.8E-08 41.0 7.3 67 4-70 463-576 (631)
64 PF05517 p25-alpha: p25-alpha 97.4 0.0048 1E-07 33.7 8.3 65 7-71 4-71 (154)
65 KOG4251|consensus 97.4 0.00014 2.9E-09 42.6 2.4 65 4-68 100-167 (362)
66 KOG0042|consensus 97.4 0.00094 2E-08 43.2 6.0 73 2-74 590-662 (680)
67 KOG4065|consensus 97.3 0.0018 3.8E-08 33.8 5.3 58 9-66 71-142 (144)
68 PF13499 EF-hand_7: EF-hand do 97.1 0.0019 4.2E-08 29.9 4.1 30 43-72 2-31 (66)
69 KOG2643|consensus 97.0 0.00026 5.7E-09 44.2 1.0 55 19-73 402-457 (489)
70 KOG1029|consensus 97.0 0.002 4.3E-08 43.2 4.5 61 5-67 195-255 (1118)
71 KOG0035|consensus 96.9 0.0077 1.7E-07 40.9 6.6 81 3-83 745-830 (890)
72 KOG2243|consensus 96.7 0.0048 1E-07 44.3 5.0 59 10-69 4062-4120(5019)
73 KOG1955|consensus 96.6 0.01 2.2E-07 38.2 5.6 67 2-70 228-294 (737)
74 KOG4578|consensus 96.6 0.0025 5.3E-08 38.8 2.7 62 10-71 338-400 (421)
75 cd05022 S-100A13 S-100A13: S-1 96.5 0.0074 1.6E-07 30.0 3.8 30 5-34 47-76 (89)
76 KOG0751|consensus 96.4 0.0077 1.7E-07 38.7 4.0 65 7-71 110-177 (694)
77 cd05026 S-100Z S-100Z: S-100Z 96.3 0.011 2.4E-07 29.5 3.8 30 5-34 53-82 (93)
78 cd00051 EFh EF-hand, calcium b 96.3 0.018 3.9E-07 25.3 4.3 28 43-70 2-29 (63)
79 KOG2562|consensus 96.3 0.034 7.4E-07 35.4 6.4 59 10-71 283-345 (493)
80 KOG0038|consensus 96.2 0.028 6.1E-07 30.7 5.0 66 13-78 79-145 (189)
81 PF05042 Caleosin: Caleosin re 96.2 0.052 1.1E-06 30.3 6.1 68 4-71 6-126 (174)
82 cd05023 S-100A11 S-100A11: S-1 96.1 0.015 3.2E-07 28.9 3.7 30 5-34 52-81 (89)
83 cd05027 S-100B S-100B: S-100B 96.1 0.032 7E-07 27.6 4.7 28 42-69 9-38 (88)
84 smart00027 EH Eps15 homology d 96.1 0.037 8.1E-07 27.6 5.0 29 41-69 10-38 (96)
85 cd05030 calgranulins Calgranul 96.0 0.019 4.2E-07 28.4 3.7 31 4-34 50-80 (88)
86 cd05029 S-100A6 S-100A6: S-100 96.0 0.02 4.4E-07 28.4 3.8 31 4-34 50-80 (88)
87 cd00213 S-100 S-100: S-100 dom 96.0 0.021 4.5E-07 28.0 3.8 30 41-70 8-39 (88)
88 KOG0169|consensus 95.9 0.06 1.3E-06 36.2 6.5 68 5-72 136-203 (746)
89 PF14658 EF-hand_9: EF-hand do 95.9 0.029 6.2E-07 26.4 3.7 30 4-33 34-64 (66)
90 cd05024 S-100A10 S-100A10: A s 95.9 0.029 6.3E-07 28.1 4.0 31 4-34 47-77 (91)
91 PF14788 EF-hand_10: EF hand; 95.9 0.03 6.6E-07 25.0 3.6 29 6-34 22-50 (51)
92 KOG2562|consensus 95.8 0.035 7.6E-07 35.4 5.0 61 5-65 351-420 (493)
93 cd05025 S-100A1 S-100A1: S-100 95.8 0.027 5.8E-07 27.9 3.7 30 5-34 52-81 (92)
94 cd00252 SPARC_EC SPARC_EC; ext 95.8 0.023 4.9E-07 29.7 3.5 27 5-31 80-106 (116)
95 cd05031 S-100A10_like S-100A10 95.7 0.022 4.7E-07 28.4 3.3 31 5-35 51-81 (94)
96 KOG4251|consensus 95.7 0.048 1E-06 32.3 4.8 60 6-65 282-341 (362)
97 cd00052 EH Eps15 homology doma 95.6 0.037 7.9E-07 25.3 3.7 29 5-33 33-61 (67)
98 KOG2643|consensus 95.5 0.067 1.4E-06 34.0 5.3 52 15-70 296-347 (489)
99 PF12763 EF-hand_4: Cytoskelet 95.4 0.039 8.5E-07 28.3 3.5 31 4-34 42-72 (104)
100 KOG4666|consensus 95.3 0.11 2.4E-06 32.0 5.7 64 6-69 260-324 (412)
101 KOG0751|consensus 95.2 0.1 2.2E-06 33.9 5.6 54 15-70 84-137 (694)
102 KOG4666|consensus 95.2 0.061 1.3E-06 33.1 4.3 65 5-70 296-360 (412)
103 PF09069 EF-hand_3: EF-hand; 94.7 0.25 5.4E-06 24.7 7.1 64 4-70 2-76 (90)
104 KOG3555|consensus 94.5 0.11 2.3E-06 32.3 4.2 61 5-69 250-310 (434)
105 KOG4347|consensus 94.4 0.076 1.7E-06 35.2 3.7 57 6-63 556-612 (671)
106 PLN02952 phosphoinositide phos 93.5 0.8 1.7E-05 30.6 7.0 56 18-74 13-70 (599)
107 PF09279 EF-hand_like: Phospho 93.0 0.52 1.1E-05 22.7 4.7 31 42-73 1-31 (83)
108 KOG1707|consensus 92.2 0.25 5.3E-06 32.7 3.4 62 4-68 314-376 (625)
109 KOG1029|consensus 92.1 1.4 3.1E-05 30.6 6.7 55 11-68 22-76 (1118)
110 PRK12309 transaldolase/EF-hand 91.5 0.36 7.8E-06 30.5 3.5 27 7-33 359-385 (391)
111 PF08976 DUF1880: Domain of un 91.4 0.3 6.5E-06 25.6 2.6 31 38-68 4-34 (118)
112 KOG3866|consensus 91.3 0.61 1.3E-05 28.8 4.2 62 9-70 248-325 (442)
113 PF02761 Cbl_N2: CBL proto-onc 90.7 1.2 2.6E-05 22.1 6.0 50 19-68 20-69 (85)
114 PF14513 DAG_kinase_N: Diacylg 90.5 0.67 1.5E-05 25.1 3.5 54 19-74 5-65 (138)
115 PF08414 NADPH_Ox: Respiratory 90.0 1.6 3.4E-05 22.3 6.3 63 4-71 29-94 (100)
116 KOG0041|consensus 89.6 0.8 1.7E-05 26.5 3.5 29 42-70 100-128 (244)
117 PLN02222 phosphoinositide phos 89.6 3.6 7.9E-05 27.6 6.9 64 5-70 25-91 (581)
118 KOG0998|consensus 88.6 0.22 4.8E-06 34.3 1.0 66 3-70 281-346 (847)
119 KOG2871|consensus 88.4 0.67 1.5E-05 29.2 2.9 63 4-66 308-371 (449)
120 PLN02228 Phosphoinositide phos 87.8 6.3 0.00014 26.4 7.3 65 5-71 24-94 (567)
121 KOG1955|consensus 87.4 0.89 1.9E-05 29.9 3.0 31 4-34 264-294 (737)
122 PF08726 EFhand_Ca_insen: Ca2+ 86.3 1.4 2.9E-05 21.0 2.7 54 4-65 5-65 (69)
123 PLN02230 phosphoinositide phos 84.8 9.9 0.00022 25.7 7.3 64 5-69 29-102 (598)
124 PF07308 DUF1456: Protein of u 84.0 3.3 7.1E-05 19.6 5.1 48 23-70 15-62 (68)
125 PF05042 Caleosin: Caleosin re 83.0 6.5 0.00014 22.2 6.8 61 5-66 96-163 (174)
126 PF12174 RST: RCD1-SRO-TAF4 (R 81.5 2.1 4.5E-05 20.4 2.2 46 27-72 11-56 (70)
127 PLN02223 phosphoinositide phos 81.3 14 0.00029 24.8 6.7 65 5-70 16-93 (537)
128 TIGR01848 PHA_reg_PhaR polyhyd 81.3 5.8 0.00013 20.6 5.0 50 12-61 10-69 (107)
129 KOG1265|consensus 80.3 19 0.00042 25.9 7.6 67 5-71 221-301 (1189)
130 KOG2301|consensus 79.4 2.3 5E-05 31.7 2.8 67 3-70 1415-1485(1592)
131 PLN02952 phosphoinositide phos 79.1 17 0.00037 24.7 7.5 65 4-69 37-110 (599)
132 KOG3449|consensus 79.0 7.3 0.00016 20.3 5.0 52 9-65 5-56 (112)
133 KOG0169|consensus 78.8 19 0.00042 25.1 7.5 62 6-71 173-234 (746)
134 PF07879 PHB_acc_N: PHB/PHA ac 77.4 6.1 0.00013 18.5 3.6 22 12-33 10-31 (64)
135 KOG4301|consensus 77.2 7.2 0.00016 24.6 4.0 62 10-72 115-176 (434)
136 KOG4004|consensus 77.1 1.1 2.4E-05 25.9 0.6 58 11-70 193-251 (259)
137 cd07313 terB_like_2 tellurium 77.1 7.5 0.00016 19.4 3.8 54 18-71 12-67 (104)
138 KOG3555|consensus 75.8 3.5 7.6E-05 26.0 2.5 65 5-69 211-278 (434)
139 PF11829 DUF3349: Protein of u 73.8 10 0.00022 19.3 4.5 60 22-81 20-79 (96)
140 KOG4347|consensus 72.6 10 0.00023 25.8 4.2 30 41-70 555-584 (671)
141 PF00404 Dockerin_1: Dockerin 72.5 4.4 9.5E-05 14.6 2.1 13 16-28 2-14 (21)
142 PF09068 EF-hand_2: EF hand; 71.7 8.9 0.00019 20.4 3.2 22 46-67 102-123 (127)
143 KOG4403|consensus 70.1 28 0.00061 22.9 5.9 71 4-78 67-138 (575)
144 KOG4403|consensus 69.6 4.9 0.00011 26.1 2.2 62 18-79 41-106 (575)
145 KOG0040|consensus 69.0 32 0.0007 26.7 6.0 47 6-52 2297-2345(2399)
146 PF01885 PTS_2-RNA: RNA 2'-pho 66.1 22 0.00047 20.3 4.1 37 15-51 26-62 (186)
147 COG4103 Uncharacterized protei 66.1 20 0.00044 19.7 4.3 59 10-71 35-96 (148)
148 PF08461 HTH_12: Ribonuclease 64.2 14 0.0003 17.2 3.2 37 18-54 10-46 (66)
149 COG2818 Tag 3-methyladenine DN 63.6 10 0.00022 21.7 2.5 40 4-43 54-93 (188)
150 PRK00819 RNA 2'-phosphotransfe 63.1 26 0.00056 19.9 4.4 36 16-51 28-63 (179)
151 KOG1707|consensus 63.0 47 0.001 22.8 5.8 66 4-69 194-265 (625)
152 TIGR01639 P_fal_TIGR01639 Plas 59.6 17 0.00037 16.7 3.9 31 20-50 8-38 (61)
153 PF03963 FlgD: Flagellar hook 59.3 17 0.00038 17.8 2.6 25 52-76 25-49 (81)
154 TIGR00624 tag DNA-3-methyladen 59.1 14 0.0003 21.1 2.5 45 4-48 52-96 (179)
155 TIGR03573 WbuX N-acetyl sugar 59.0 42 0.00091 21.0 4.9 10 40-49 305-314 (343)
156 PF03979 Sigma70_r1_1: Sigma-7 58.9 20 0.00044 17.3 3.5 32 18-51 18-49 (82)
157 PF03672 UPF0154: Uncharacteri 58.4 19 0.00042 16.9 3.9 32 19-50 29-60 (64)
158 PF09373 PMBR: Pseudomurein-bi 57.7 13 0.00028 14.7 2.1 16 55-70 2-17 (33)
159 PF01023 S_100: S-100/ICaBP ty 57.1 16 0.00035 15.6 3.3 29 5-33 6-36 (44)
160 PF11020 DUF2610: Domain of un 56.7 24 0.00051 17.4 3.8 42 29-70 36-78 (82)
161 PF07199 DUF1411: Protein of u 56.3 38 0.00082 19.6 5.9 67 4-70 121-187 (194)
162 PF09336 Vps4_C: Vps4 C termin 56.1 20 0.00044 16.5 2.7 25 21-45 29-53 (62)
163 PF12486 DUF3702: ImpA domain 56.0 18 0.00039 19.9 2.6 33 2-34 66-98 (148)
164 PF14294 DUF4372: Domain of un 55.5 24 0.00051 17.0 4.5 46 38-83 14-61 (76)
165 KOG1954|consensus 54.7 32 0.00068 22.5 3.7 45 19-65 457-501 (532)
166 PRK10353 3-methyl-adenine DNA 54.2 13 0.00028 21.4 1.9 45 4-48 53-97 (187)
167 PF02885 Glycos_trans_3N: Glyc 53.1 23 0.00051 16.3 4.0 16 35-50 12-27 (66)
168 PRK00523 hypothetical protein; 52.4 27 0.00059 16.8 3.9 31 20-50 38-68 (72)
169 PF11116 DUF2624: Protein of u 50.9 32 0.00069 17.2 6.2 52 19-70 12-63 (85)
170 PHA02105 hypothetical protein 50.6 26 0.00057 16.1 3.7 48 21-68 4-56 (68)
171 KOG4286|consensus 49.9 45 0.00097 23.7 4.1 59 8-67 473-531 (966)
172 smart00549 TAFH TAF homology. 49.1 36 0.00078 17.2 3.3 31 41-74 26-56 (92)
173 PF00046 Homeobox: Homeobox do 49.0 25 0.00053 15.3 5.4 40 2-48 10-49 (57)
174 KOG0113|consensus 48.2 35 0.00076 21.3 3.1 44 41-84 79-122 (335)
175 PF03352 Adenine_glyco: Methyl 48.2 9.4 0.0002 21.7 0.8 46 4-49 48-93 (179)
176 PTZ00373 60S Acidic ribosomal 48.0 41 0.0009 17.7 5.2 50 11-65 9-58 (112)
177 PLN02228 Phosphoinositide phos 47.5 86 0.0019 21.4 5.0 35 37-73 20-54 (567)
178 PLN02230 phosphoinositide phos 47.4 63 0.0014 22.2 4.4 34 38-72 26-59 (598)
179 PF08355 EF_assoc_1: EF hand a 46.4 23 0.00049 17.2 1.9 18 51-68 12-29 (76)
180 KOG0998|consensus 46.3 25 0.00055 25.0 2.6 65 3-70 127-191 (847)
181 PF14164 YqzH: YqzH-like prote 45.7 35 0.00075 16.1 3.6 29 5-33 8-37 (64)
182 COG5562 Phage envelope protein 44.0 23 0.00049 19.3 1.8 24 46-69 77-100 (137)
183 PRK01844 hypothetical protein; 41.6 44 0.00096 16.1 3.9 30 21-50 38-67 (72)
184 KOG1264|consensus 41.2 44 0.00096 24.2 3.1 64 8-73 147-212 (1267)
185 PF09821 AAA_assoc_C: C-termin 41.1 57 0.0012 17.2 3.5 32 46-77 69-100 (120)
186 PF07531 TAFH: NHR1 homology t 41.0 25 0.00054 18.0 1.6 31 41-74 27-57 (96)
187 KOG0506|consensus 41.0 74 0.0016 21.5 3.9 40 11-50 92-131 (622)
188 TIGR02613 mob_myst_B mobile my 40.4 70 0.0015 18.1 4.0 22 16-37 126-147 (186)
189 KOG0455|consensus 38.9 64 0.0014 19.9 3.2 33 7-39 180-212 (364)
190 PF09851 SHOCT: Short C-termin 38.6 31 0.00066 13.4 3.3 23 3-31 4-26 (31)
191 PF02671 PAH: Paired amphipath 38.5 37 0.0008 14.3 3.0 18 56-73 17-34 (47)
192 COG3763 Uncharacterized protei 38.4 50 0.0011 15.8 3.8 31 20-50 37-67 (71)
193 cd00086 homeodomain Homeodomai 38.3 39 0.00084 14.5 5.3 39 3-48 11-49 (59)
194 PRK11911 flgD flagellar basal 38.1 46 0.001 18.2 2.4 25 52-76 20-44 (140)
195 PTZ00124 adenosine deaminase; 37.9 1.1E+02 0.0023 19.5 5.5 50 19-70 45-94 (362)
196 TIGR01565 homeo_ZF_HD homeobox 37.9 46 0.00099 15.2 3.8 30 2-36 11-44 (58)
197 PF12588 PSDC: Phophatidylseri 37.9 72 0.0016 17.5 4.1 17 58-74 43-59 (141)
198 PRK06009 flgD flagellar basal 37.4 49 0.0011 18.2 2.4 22 55-76 30-51 (140)
199 PRK09358 adenosine deaminase; 35.9 1.1E+02 0.0023 18.9 4.6 45 19-68 20-67 (340)
200 COG5394 Uncharacterized protei 35.9 86 0.0019 17.8 5.0 59 12-71 19-88 (193)
201 KOG1785|consensus 35.8 84 0.0018 20.7 3.5 45 19-63 188-232 (563)
202 TIGR02675 tape_meas_nterm tape 35.6 56 0.0012 15.6 2.7 16 18-33 27-42 (75)
203 TIGR02574 stabl_TIGR02574 puta 35.3 51 0.0011 15.1 3.4 14 4-17 9-22 (63)
204 PRK06792 flgD flagellar basal 34.7 47 0.001 19.2 2.2 24 53-76 46-69 (190)
205 cd07909 YciF YciF bacterial st 34.6 47 0.001 18.2 2.1 21 2-22 47-67 (147)
206 cd05833 Ribosomal_P2 Ribosomal 34.3 74 0.0016 16.6 5.2 56 11-71 7-62 (109)
207 KOG1265|consensus 32.6 2.1E+02 0.0045 21.3 5.4 33 39-71 219-251 (1189)
208 cd07316 terB_like_DjlA N-termi 32.5 70 0.0015 15.8 5.2 54 18-71 12-66 (106)
209 PRK09618 flgD flagellar basal 32.3 70 0.0015 17.6 2.5 23 54-76 23-45 (142)
210 PF09808 SNAPc_SNAP43: Small n 32.2 86 0.0019 17.9 3.0 26 42-69 5-30 (194)
211 PRK09389 (R)-citramalate synth 32.0 1.6E+02 0.0034 19.7 4.9 48 25-72 321-370 (488)
212 KOG0493|consensus 31.1 1.3E+02 0.0029 18.5 4.2 41 2-49 256-296 (342)
213 cd08032 LARP_7 La RNA-binding 30.6 77 0.0017 15.6 2.6 18 46-63 28-45 (82)
214 PF06226 DUF1007: Protein of u 30.4 67 0.0014 18.6 2.4 23 12-34 57-79 (212)
215 PF09454 Vps23_core: Vps23 cor 30.4 59 0.0013 15.2 1.8 16 55-70 37-52 (65)
216 KOG0039|consensus 30.1 1.9E+02 0.0042 20.1 4.8 64 4-68 17-88 (646)
217 PF08006 DUF1700: Protein of u 30.0 1.1E+02 0.0023 17.1 4.9 28 23-50 2-29 (181)
218 cd08315 Death_TRAILR_DR4_DR5 D 30.0 83 0.0018 15.8 6.8 41 3-49 2-42 (96)
219 COG1843 FlgD Flagellar hook ca 29.9 63 0.0014 19.1 2.3 23 54-76 25-47 (222)
220 PF05099 TerB: Tellurite resis 29.6 26 0.00056 18.4 0.6 17 18-34 36-52 (140)
221 PRK09430 djlA Dna-J like membr 28.9 1.4E+02 0.003 18.1 5.2 54 17-71 67-122 (267)
222 TIGR03849 arch_ComA phosphosul 28.6 1.4E+02 0.003 18.0 5.8 48 19-66 168-222 (237)
223 cd06403 PB1_Par6 The PB1 domai 27.5 24 0.00053 17.3 0.3 23 49-71 13-35 (80)
224 PF05383 La: La domain; Inter 27.1 77 0.0017 14.5 2.0 16 13-28 23-38 (61)
225 PF14178 YppF: YppF-like prote 26.8 48 0.001 15.4 1.2 20 55-74 34-53 (60)
226 COG5069 SAC6 Ca2+-binding acti 26.6 1.2E+02 0.0027 20.5 3.2 34 6-39 486-519 (612)
227 PRK08181 transposase; Validate 26.2 1.6E+02 0.0035 17.9 4.7 49 19-70 4-52 (269)
228 PF04433 SWIRM: SWIRM domain; 26.0 44 0.00095 16.2 1.0 11 54-64 50-60 (86)
229 smart00513 SAP Putative DNA-bi 25.9 59 0.0013 12.8 2.6 19 21-39 3-21 (35)
230 PHA02975 hypothetical protein; 25.4 90 0.002 14.9 1.9 16 59-74 19-34 (69)
231 KOG4070|consensus 25.2 1.4E+02 0.003 16.8 4.1 56 15-70 26-86 (180)
232 PF04282 DUF438: Family of unk 24.9 96 0.0021 14.9 5.8 10 58-67 46-55 (71)
233 cd07176 terB tellurite resista 23.7 62 0.0013 16.0 1.4 16 19-34 16-31 (111)
234 PF04614 Pex19: Pex19 protein 23.7 1.6E+02 0.0036 17.6 3.3 63 3-71 144-209 (248)
235 COG1448 TyrB Aspartate/tyrosin 23.7 2.2E+02 0.0048 18.6 4.2 40 11-51 147-202 (396)
236 COG3383 Uncharacterized anaero 23.3 2.8E+02 0.006 20.3 4.5 35 4-38 713-747 (978)
237 PF02037 SAP: SAP domain; Int 23.1 70 0.0015 12.7 2.4 19 21-39 3-21 (35)
238 PF07492 Trehalase_Ca-bi: Neut 22.9 30 0.00064 13.6 0.1 16 46-61 4-19 (30)
239 PTZ00315 2'-phosphotransferase 22.8 2.7E+02 0.0059 19.3 4.5 37 15-51 399-435 (582)
240 PF10982 DUF2789: Protein of u 22.8 1.1E+02 0.0024 14.8 3.3 31 25-55 6-36 (74)
241 COG2910 Putative NADH-flavin r 22.7 1.1E+02 0.0023 18.0 2.2 23 51-73 177-199 (211)
242 PRK07394 hypothetical protein; 22.6 2.1E+02 0.0047 18.1 4.1 31 20-50 20-51 (342)
243 PF12238 MSA-2c: Merozoite sur 22.5 1.8E+02 0.0039 17.2 4.3 35 41-75 84-119 (205)
244 PHA02692 hypothetical protein; 22.1 1.1E+02 0.0024 14.7 3.3 26 46-73 8-33 (70)
245 PF11363 DUF3164: Protein of u 22.0 1.8E+02 0.0038 16.9 5.3 39 31-69 109-147 (195)
246 PF04077 DsrH: DsrH like prote 21.7 90 0.002 15.3 1.7 15 56-70 70-84 (88)
247 COG1859 KptA RNA:NAD 2'-phosph 21.4 1.9E+02 0.0042 17.1 4.0 34 16-49 54-87 (211)
248 PF09967 DUF2201: VWA-like dom 21.0 99 0.0021 16.3 1.8 18 17-34 6-23 (126)
249 COG2143 Thioredoxin-related pr 21.0 79 0.0017 18.0 1.5 21 14-34 122-148 (182)
250 PRK13510 sulfur transfer compl 20.8 1.1E+02 0.0025 15.3 2.0 17 54-70 73-89 (95)
251 PRK12813 flgD flagellar basal 20.5 1E+02 0.0022 18.3 1.9 20 57-76 29-48 (223)
252 PF07862 Nif11: Nitrogen fixat 20.4 95 0.0021 13.2 2.8 20 23-42 28-47 (49)
253 PRK14981 DNA-directed RNA poly 20.2 1.5E+02 0.0033 15.4 3.9 13 38-50 79-91 (112)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.73 E-value=4.7e-17 Score=87.89 Aligned_cols=83 Identities=48% Similarity=0.839 Sum_probs=78.9
Q ss_pred CchHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCCCCHHHH
Q psy15703 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDEL 80 (84)
Q Consensus 1 ~~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~~~~~ 80 (84)
++|+++++++|..+|++++|.|++.++..+++.+|.+++.+.+..++..++. +.+.|+|.+|+.++.......+..+++
T Consensus 16 ~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel 94 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEEL 94 (160)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHH
Confidence 3689999999999999999999999999999999999999999999999999 899999999999999999888889999
Q ss_pred HhcC
Q psy15703 81 KEAF 84 (84)
Q Consensus 81 ~~~f 84 (84)
..||
T Consensus 95 ~~aF 98 (160)
T COG5126 95 REAF 98 (160)
T ss_pred HHHH
Confidence 8887
No 2
>KOG0027|consensus
Probab=99.64 E-value=3.3e-15 Score=80.70 Aligned_cols=83 Identities=58% Similarity=0.941 Sum_probs=74.1
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCCCC----H
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADG----E 77 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~----~ 77 (84)
+++.+++.+|..+|++++|+|+..++..+++.++..++..++..++..+|.+++|.|++.+|+.++......... .
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 467889999999999999999999999999999999999999999999999999999999999999987654433 3
Q ss_pred HHHHhcC
Q psy15703 78 DELKEAF 84 (84)
Q Consensus 78 ~~~~~~f 84 (84)
+++.+||
T Consensus 85 ~el~eaF 91 (151)
T KOG0027|consen 85 EELKEAF 91 (151)
T ss_pred HHHHHHH
Confidence 4677665
No 3
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.63 E-value=3.4e-15 Score=74.16 Aligned_cols=69 Identities=13% Similarity=0.297 Sum_probs=63.1
Q ss_pred hHHHHHHHHhhhCC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 3 YLDKFKEAFMLFDK-DEDGKVTVAELGVVMRS-LGQRPTE-TELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 3 ~~~~~~~~f~~~d~-~~~g~i~~~~~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
.+..+..+|+.||+ +++|+|+..+++.++.. ++..++. ++++.++..+|.|++|+|+|+||+.++..+.
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 47789999999999 99999999999999998 7766776 8899999999999999999999999998764
No 4
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.62 E-value=8.1e-15 Score=69.13 Aligned_cols=62 Identities=40% Similarity=0.747 Sum_probs=54.3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHH----HHHHHHHHhCCCCCCceeHHHHHHHH
Q psy15703 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTET----ELRDMVNEVDQDGNGTIEFNEFLQMM 67 (84)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~~~i~~~ef~~~l 67 (84)
+++.+|..+|.+++|+|+..++..++..++...+.. .++.++..+|.+++|.|+|.||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478899999999999999999999999998766544 45556999999999999999999875
No 5
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.60 E-value=2.1e-14 Score=71.27 Aligned_cols=69 Identities=19% Similarity=0.435 Sum_probs=63.3
Q ss_pred hHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 3 YLDKFKEAFMLFD-KDEDG-KVTVAELGVVMRS-----LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 3 ~~~~~~~~f~~~d-~~~~g-~i~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
-+..+..+|+.+| ++++| .|+..+++.+|+. ++..++..++..++..+|.+++|+|+|.+|+.++....
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3678999999998 79999 5999999999999 88888889999999999999999999999999988764
No 6
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.57 E-value=4.8e-14 Score=76.31 Aligned_cols=67 Identities=39% Similarity=0.798 Sum_probs=63.8
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
..++++.+|+.||.+++|+|+..++..+++.+|...+.++++.++..++.+++|.|+|++|..++..
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 3678999999999999999999999999999999999999999999999999999999999998765
No 7
>KOG0028|consensus
Probab=99.54 E-value=1.1e-13 Score=74.18 Aligned_cols=83 Identities=41% Similarity=0.730 Sum_probs=78.0
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCCCCHHHHH
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELK 81 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~~~~~~ 81 (84)
+|.++++..|..||+++.|+|+..+++.+++.+|..+...++..++..+++++.|.|+|++|...+...+...++.+++.
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~ 109 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIK 109 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHH
Confidence 46688999999999999999999999999999999999999999999999999999999999999999998888999988
Q ss_pred hcC
Q psy15703 82 EAF 84 (84)
Q Consensus 82 ~~f 84 (84)
.||
T Consensus 110 ~af 112 (172)
T KOG0028|consen 110 KAF 112 (172)
T ss_pred HHH
Confidence 876
No 8
>KOG0027|consensus
Probab=99.54 E-value=1.1e-13 Score=74.81 Aligned_cols=66 Identities=47% Similarity=0.831 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
.++++.+|+.+|++++|+|+..+++.++..+|...+.+.+..++..++.+++|.|+|.+|+.++..
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 568999999999999999999999999999999999999999999999999999999999998874
No 9
>PTZ00183 centrin; Provisional
Probab=99.54 E-value=2.7e-13 Score=73.20 Aligned_cols=82 Identities=43% Similarity=0.755 Sum_probs=69.9
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCCCCHHHHH
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELK 81 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~~~~~~ 81 (84)
++++++..+|..+|++++|.|+..+|..+++.++..++...+..++..++.+++|.|+|.+|..++..........+.+.
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 93 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEIL 93 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHH
Confidence 36788999999999999999999999999999988888889999999999999999999999998876544444444554
Q ss_pred hc
Q psy15703 82 EA 83 (84)
Q Consensus 82 ~~ 83 (84)
.+
T Consensus 94 ~~ 95 (158)
T PTZ00183 94 KA 95 (158)
T ss_pred HH
Confidence 44
No 10
>PTZ00184 calmodulin; Provisional
Probab=99.50 E-value=4.6e-13 Score=71.51 Aligned_cols=81 Identities=65% Similarity=1.053 Sum_probs=68.7
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCCCCHHHHH
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELK 81 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~~~~~~ 81 (84)
++++.++..|..+|.+++|.|+..+|..++..++.++....+..++..++.+++|.|+|++|+.++...+......+.+.
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 87 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIK 87 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHH
Confidence 35778999999999999999999999999999888888889999999999999999999999999886654333334443
Q ss_pred h
Q psy15703 82 E 82 (84)
Q Consensus 82 ~ 82 (84)
.
T Consensus 88 ~ 88 (149)
T PTZ00184 88 E 88 (149)
T ss_pred H
Confidence 3
No 11
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.50 E-value=5.3e-13 Score=66.77 Aligned_cols=68 Identities=21% Similarity=0.510 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 4 LDKFKEAFMLFD-KDEDG-KVTVAELGVVMRS-LG----QRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 4 ~~~~~~~f~~~d-~~~~g-~i~~~~~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
+..++.+|..|| .+++| .|+..+++.+++. ++ ..++...++.++..+|.+++|.|+|.+|+.++..+.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 568899999997 99999 5999999999975 43 356788999999999999999999999999988764
No 12
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.49 E-value=5.6e-13 Score=67.14 Aligned_cols=67 Identities=28% Similarity=0.388 Sum_probs=61.3
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
+++..+..+|..+|.+++|.|+..++..+++..+ ++.+.+..++..++.+++|.|+|++|+.++..+
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 5788999999999999999999999999999865 677889999999999999999999999988765
No 13
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.49 E-value=3.7e-13 Score=66.77 Aligned_cols=70 Identities=17% Similarity=0.421 Sum_probs=61.5
Q ss_pred chHHHHHHHHhhhCC--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 2 KYLDKFKEAFMLFDK--DEDGKVTVAELGVVMRS-LGQR----PTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~--~~~g~i~~~~~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
++++.++.+|..+|+ +++|.|+..++..+++. ++.+ ++...+..++..++.+++|.|+|.+|+.++....
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 578899999999999 89999999999999976 4533 3478899999999999999999999999988753
No 14
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.48 E-value=5.6e-13 Score=66.93 Aligned_cols=67 Identities=18% Similarity=0.433 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhCC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 4 LDKFKEAFMLFDK-DE-DGKVTVAELGVVMRS-----LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 4 ~~~~~~~f~~~d~-~~-~g~i~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
+..+..+|..+|. ++ +|+|+..+++.+++. ++..++...+..++..++.+++|.|+|.+|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 5678899999997 87 799999999999986 4667788999999999999999999999999988764
No 15
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.48 E-value=6.9e-13 Score=66.51 Aligned_cols=68 Identities=19% Similarity=0.430 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 4 LDKFKEAFMLFD-KDEDG-KVTVAELGVVMRSL-----GQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 4 ~~~~~~~f~~~d-~~~~g-~i~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
+..+..+|..|| .+++| +|+..+++.+++.. +...+...+..++..+|.+++|.|+|.+|+.++..+.
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 667888999998 78998 59999999999762 3345677899999999999999999999999998764
No 16
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.47 E-value=9.8e-13 Score=65.30 Aligned_cols=69 Identities=12% Similarity=0.399 Sum_probs=61.3
Q ss_pred hHHHHHHHHhhhCC-CC-CCcccHHHHHHHHHH---cCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 3 YLDKFKEAFMLFDK-DE-DGKVTVAELGVVMRS---LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 3 ~~~~~~~~f~~~d~-~~-~g~i~~~~~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
.+..+-..|..|+. ++ +|+|+..+|+.++.. ++..++.+++..++..+|.+++|+|+|.+|+.++..+.
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 46677888999997 66 899999999999963 68888999999999999999999999999999998764
No 17
>KOG0031|consensus
Probab=99.47 E-value=1e-12 Score=70.19 Aligned_cols=79 Identities=37% Similarity=0.657 Sum_probs=72.5
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCCCCHHHHH
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELK 81 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~~~~~~ 81 (84)
.||.+++++|..+|.|++|.|+.++++..+..+|..++.++++.++... .|-|+|.-|++++...+...++++.+.
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I~ 104 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVIL 104 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHHH
Confidence 5899999999999999999999999999999999999999999998865 578999999999999998888888887
Q ss_pred hcC
Q psy15703 82 EAF 84 (84)
Q Consensus 82 ~~f 84 (84)
.||
T Consensus 105 ~AF 107 (171)
T KOG0031|consen 105 NAF 107 (171)
T ss_pred HHH
Confidence 775
No 18
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.42 E-value=2.5e-12 Score=60.54 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=55.6
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
+.+|..+|++++|.|+..++..++..++. +.+.+..++..++.+++|.|+|.+|+.++....
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 56899999999999999999999998764 778899999999999999999999999887543
No 19
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.41 E-value=3.8e-12 Score=57.76 Aligned_cols=52 Identities=38% Similarity=0.717 Sum_probs=48.8
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 18 EDGKVTVAELGVVMRSLGQR-PTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 18 ~~g~i~~~~~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
++|.|+..+|..++..+|.. ++..+++.++..+|.+++|.|+|.||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888998 99999999999999999999999999999875
No 20
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.38 E-value=7.7e-12 Score=57.37 Aligned_cols=61 Identities=49% Similarity=0.933 Sum_probs=56.8
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy15703 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67 (84)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 67 (84)
+..+|..+|.+++|.|+..++..+++.++.+.+...+..++..++.+++|.|++.+|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999989999999999999999999999999998765
No 21
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.37 E-value=1.3e-11 Score=61.42 Aligned_cols=69 Identities=20% Similarity=0.393 Sum_probs=58.9
Q ss_pred hHHHHHHHHhh-hCCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 3 YLDKFKEAFML-FDKDEDG-KVTVAELGVVMRSL-----GQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 3 ~~~~~~~~f~~-~d~~~~g-~i~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
.+..+..+|+. .|.+++| +|+..+|+.++... +.......+..++..+|.+++|.|+|++|+.++..+.
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 46788899998 6787875 99999999999875 3345668899999999999999999999999988764
No 22
>KOG0037|consensus
Probab=99.29 E-value=4.7e-11 Score=67.08 Aligned_cols=70 Identities=26% Similarity=0.544 Sum_probs=64.5
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhcc
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 72 (84)
-++.++.+|+.+|.|++|.|+..||+.+|..+|..++.+..+.+++.++...+|.|.|++|+.++..+..
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 3677889999999999999999999999999999999999999999999888999999999998887643
No 23
>PF14658 EF-hand_9: EF-hand domain
Probab=99.29 E-value=4.9e-11 Score=55.74 Aligned_cols=60 Identities=38% Similarity=0.779 Sum_probs=56.3
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCCC-CceeHHHHHHHHHh
Q psy15703 10 AFMLFDKDEDGKVTVAELGVVMRSLGQ-RPTETELRDMVNEVDQDGN-GTIEFNEFLQMMSK 69 (84)
Q Consensus 10 ~f~~~d~~~~g~i~~~~~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~l~~ 69 (84)
.|..||+++.|.|+...+..+|+.++. .+..+.++.+...+|+++. |.|++++|+..|..
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 689999999999999999999999988 8899999999999999988 99999999998874
No 24
>KOG0028|consensus
Probab=99.28 E-value=5e-11 Score=64.17 Aligned_cols=67 Identities=39% Similarity=0.712 Sum_probs=63.0
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
...++..+|+.+|.+.+|.|+..+|+.+.+.+|.+++.++++.++..++.+++|.|+-++|..++..
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 4578999999999999999999999999999999999999999999999999999999999988764
No 25
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.26 E-value=8.2e-11 Score=61.07 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=53.8
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMS 68 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 68 (84)
.+..+...|..+|.|++|.|+..++..+. ..+....+..++..+|.+++|.||++||...+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 35678889999999999999999999866 334566778899999999999999999999884
No 26
>PTZ00183 centrin; Provisional
Probab=99.25 E-value=1.1e-10 Score=62.93 Aligned_cols=65 Identities=38% Similarity=0.738 Sum_probs=55.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
..+..+|..+|.+++|+|+..+|..++..++..++...+..++..++.+++|.|+|.+|..++..
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 45777888889988999999999888888887788888888888888888888999998887765
No 27
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.25 E-value=8.3e-11 Score=58.42 Aligned_cols=70 Identities=14% Similarity=0.305 Sum_probs=59.0
Q ss_pred hHHHHHHHHhhhCCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHHhCCCCCCceeHHHHHHHHHhhcc
Q psy15703 3 YLDKFKEAFMLFDKD--EDGKVTVAELGVVMR-SLGQRPT----ETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~--~~g~i~~~~~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 72 (84)
-+..+...|..++.+ .+|.|+..+++.++. .++..++ ...+..++..+|.+++|.|+|++|+.++.....
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 366788889999865 479999999999996 4554455 788999999999999999999999999987653
No 28
>PTZ00184 calmodulin; Provisional
Probab=99.24 E-value=1.1e-10 Score=62.34 Aligned_cols=64 Identities=44% Similarity=0.821 Sum_probs=52.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMS 68 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 68 (84)
..+..+|..+|.+++|+|+..++..++..++..++...+..++..++.+++|.|+|.+|+.++.
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 4566778888888888888888888888877777788888888888888888888888877764
No 29
>PLN02964 phosphatidylserine decarboxylase
Probab=99.19 E-value=2.5e-10 Score=73.10 Aligned_cols=78 Identities=28% Similarity=0.468 Sum_probs=60.2
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHHhCCCCCCceeHHHHHHHHHhhccCCCCH
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLG-QRPTETE---LRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGE 77 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~~ 77 (84)
+|++++.+.|..+|++++|.+ +..+++.++ ..++..+ ++.++..+|.+++|.|+++||+.++.. +......
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~-lg~~~se 214 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA-FGNLVAA 214 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH-hccCCCH
Confidence 467888888888999888886 777888888 4666665 788888888888889999999888885 3444556
Q ss_pred HHHHhcC
Q psy15703 78 DELKEAF 84 (84)
Q Consensus 78 ~~~~~~f 84 (84)
+++.++|
T Consensus 215 EEL~eaF 221 (644)
T PLN02964 215 NKKEELF 221 (644)
T ss_pred HHHHHHH
Confidence 6666655
No 30
>KOG0041|consensus
Probab=99.18 E-value=1.8e-10 Score=64.22 Aligned_cols=71 Identities=34% Similarity=0.586 Sum_probs=65.4
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhcc
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 72 (84)
+||+.+..+|+.+|.+.+|+|+..+++.+|..+|.+-+.--+..++...|.|.+|+|+|.+|+-++.....
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999888888899999999999999999999988876543
No 31
>KOG0030|consensus
Probab=99.18 E-value=1.9e-10 Score=60.74 Aligned_cols=80 Identities=33% Similarity=0.637 Sum_probs=68.5
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC--CCCceeHHHHHHHHHhhccCC--CCH
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQD--GNGTIEFNEFLQMMSKKMKGA--DGE 77 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~~~i~~~ef~~~l~~~~~~~--~~~ 77 (84)
+++.+++.+|..||..++|+|+..++..+++.+|.+|+..++.+.+..+..+ +-.+|+|++|+.++..+.++. .+.
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ 87 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTY 87 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcH
Confidence 5789999999999999999999999999999999999999999998888766 447899999999999886543 334
Q ss_pred HHHH
Q psy15703 78 DELK 81 (84)
Q Consensus 78 ~~~~ 81 (84)
+++.
T Consensus 88 edfv 91 (152)
T KOG0030|consen 88 EDFV 91 (152)
T ss_pred HHHH
Confidence 4443
No 32
>KOG0034|consensus
Probab=99.15 E-value=5.1e-10 Score=62.37 Aligned_cols=66 Identities=32% Similarity=0.632 Sum_probs=55.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc-CCCCC--H----HHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL-GQRPT--E----TELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~-~~~~~--~----~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
.+++-+|+.||.+++|+|+++++.++++.+ +.+.. . ..++.++..+|.+++|+|+|+||..++...
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 478889999999999999999999999886 33333 2 345678888999999999999999988763
No 33
>KOG0031|consensus
Probab=99.06 E-value=3.5e-09 Score=56.88 Aligned_cols=68 Identities=24% Similarity=0.455 Sum_probs=63.4
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
...+.+..+|..||++++|.|+.+.++.+|...|.+.+.+++..++..+..+..|.++|..|+.++.+
T Consensus 98 dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 34567889999999999999999999999999999999999999999999999999999999998884
No 34
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.97 E-value=2e-08 Score=49.90 Aligned_cols=67 Identities=16% Similarity=0.395 Sum_probs=55.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRS-----LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
+..+...|..|-. ..+.++..+|+.++.. ++....+..++.++...|.|++|.|+|.||+.++..+.
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 5667778888873 4679999999999865 23344677899999999999999999999999998764
No 35
>KOG0040|consensus
Probab=98.96 E-value=4.8e-09 Score=71.82 Aligned_cols=83 Identities=25% Similarity=0.529 Sum_probs=70.0
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCC-------HHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCC
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPT-------ETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGA 74 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~ 74 (84)
+++.++.-+|++||.+.+|.++...|+..|+.+|+++| .+.+..++...|++.+|.|+..+|+.+|......+
T Consensus 2250 e~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeN 2329 (2399)
T KOG0040|consen 2250 EQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETEN 2329 (2399)
T ss_pred HHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccc
Confidence 46788889999999999999999999999999998763 34789999999999999999999999998876433
Q ss_pred -CCHHHHHhcC
Q psy15703 75 -DGEDELKEAF 84 (84)
Q Consensus 75 -~~~~~~~~~f 84 (84)
-..+++..||
T Consensus 2330 I~s~~eIE~Af 2340 (2399)
T KOG0040|consen 2330 ILSSEEIEDAF 2340 (2399)
T ss_pred ccchHHHHHHH
Confidence 3345666554
No 36
>KOG0044|consensus
Probab=98.92 E-value=8.9e-09 Score=57.62 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=56.3
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
.-...+|+.+|.+++|.|+..+|..++.........+.++..|..||.+++|.|+..+++.++..++
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~ 130 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIY 130 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHH
Confidence 3456688999999999999999888888876666677777889999999999999999988888775
No 37
>PLN02964 phosphatidylserine decarboxylase
Probab=98.87 E-value=2.4e-08 Score=64.30 Aligned_cols=65 Identities=17% Similarity=0.462 Sum_probs=60.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
.+..+|..+|.+++|.|+..+|..++..++...+.+++..+|..+|.+++|.|+++++..++...
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 47889999999999999999999999988877888899999999999999999999999988873
No 38
>KOG0044|consensus
Probab=98.86 E-value=1.4e-08 Score=56.88 Aligned_cols=65 Identities=26% Similarity=0.541 Sum_probs=53.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc----CC-------CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL----GQ-------RPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
+.+..+|+.+|.+++|+|++.++..++..+ +. ..+...+..+|+.+|.|++|.|++++|......
T Consensus 100 ekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 100 EKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 355667999999999999999998887664 21 124567889999999999999999999887664
No 39
>KOG0034|consensus
Probab=98.85 E-value=3.7e-08 Score=55.01 Aligned_cols=79 Identities=28% Similarity=0.520 Sum_probs=50.8
Q ss_pred chHHHHHHHHhhhCCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCc-eeHHHHHHHHHhhccCCCCHHH
Q psy15703 2 KYLDKFKEAFMLFDKD-EDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGT-IEFNEFLQMMSKKMKGADGEDE 79 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~-~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-i~~~ef~~~l~~~~~~~~~~~~ 79 (84)
+++..+...|..++.+ +.|+++.++|..++. +..++ ....++..++.+++|. |+|++|+..+..........+.
T Consensus 30 ~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~K 105 (187)
T KOG0034|consen 30 NEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREK 105 (187)
T ss_pred HHHHHHHHHHHHhccccccCccCHHHHHHHHH-HhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHH
Confidence 4678889999999998 899999999988873 23333 2334555555555555 6666666666655544444444
Q ss_pred HHhcC
Q psy15703 80 LKEAF 84 (84)
Q Consensus 80 ~~~~f 84 (84)
+.-||
T Consensus 106 l~faF 110 (187)
T KOG0034|consen 106 LRFAF 110 (187)
T ss_pred HHHHH
Confidence 44443
No 40
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.83 E-value=9.3e-09 Score=40.90 Aligned_cols=26 Identities=50% Similarity=0.787 Sum_probs=12.6
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHH
Q psy15703 7 FKEAFMLFDKDEDGKVTVAELGVVMR 32 (84)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~ 32 (84)
+..+|+.+|+|++|+|+.++|..+++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 34444455555555555555544443
No 41
>KOG0030|consensus
Probab=98.83 E-value=2.7e-08 Score=52.72 Aligned_cols=63 Identities=32% Similarity=0.641 Sum_probs=55.5
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMS 68 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 68 (84)
+.+.+..+.||+.++|.|+..+++.+|-.+|..++.+++..++.-. .|.+|.|+|+.|+..+.
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 4566778899999999999999999999999999999999988876 57789999999987653
No 42
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.78 E-value=2.3e-07 Score=47.36 Aligned_cols=64 Identities=25% Similarity=0.413 Sum_probs=54.8
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMS 68 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 68 (84)
++.+.....|...++ ++|.|+-...+.++...+ ++.+.+..++...|.+++|.+++.||+..+.
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 567888999999986 579999999999888755 6778999999999999999999999987554
No 43
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.77 E-value=3e-08 Score=39.43 Aligned_cols=28 Identities=50% Similarity=0.946 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 42 ELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 42 ~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
+++.+|+.+|.|++|.|+++||..++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4678999999999999999999998875
No 44
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.75 E-value=1.2e-07 Score=42.10 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=41.5
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 21 KVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 21 ~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
+++..+++.+|+.+...+....+..+|+.+|.+++|.+..+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999999999998753
No 45
>KOG0037|consensus
Probab=98.72 E-value=1.8e-07 Score=52.93 Aligned_cols=66 Identities=24% Similarity=0.325 Sum_probs=58.3
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQ-RPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
..+..+|...|+++.|.|+.+++..+|....+ ..+.+.++.++..+|.+.+|+|++.||..+|..+
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i 123 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI 123 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 35777899999999999999999999986544 5678899999999999999999999999988764
No 46
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.72 E-value=3.5e-08 Score=39.78 Aligned_cols=30 Identities=50% Similarity=0.909 Sum_probs=23.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHH-HcC
Q psy15703 6 KFKEAFMLFDKDEDGKVTVAELGVVMR-SLG 35 (84)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~-~~~ 35 (84)
+++.+|+.+|.+++|+|+..+|..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467888999999999999999998888 454
No 47
>KOG0036|consensus
Probab=98.68 E-value=2.4e-07 Score=56.78 Aligned_cols=68 Identities=19% Similarity=0.400 Sum_probs=60.4
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQR-PTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
...+++..|..+|.+++|.++..++.+.+..+..+ +.......++...|.+.+|+++|.+|..++...
T Consensus 12 r~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~ 80 (463)
T KOG0036|consen 12 RDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK 80 (463)
T ss_pred HHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh
Confidence 34578889999999999999999999999998777 667778889999999999999999999888764
No 48
>KOG0036|consensus
Probab=98.67 E-value=1.9e-07 Score=57.16 Aligned_cols=67 Identities=21% Similarity=0.368 Sum_probs=61.9
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
...++..+|...|.+++|.|+.+++...++.++.+++.+.+.+++...|+++++.|+++++-..+.-
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 3567888999999999999999999999999999999999999999999999999999999877653
No 49
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.49 E-value=8e-07 Score=54.70 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
...+..+|+.+|.+++|.|+..+|.. +..+|..+|.|++|.|+++||...+...+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999831 46789999999999999999999887643
No 50
>KOG0377|consensus
Probab=98.47 E-value=1.6e-06 Score=53.96 Aligned_cols=66 Identities=21% Similarity=0.482 Sum_probs=56.9
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL----GQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
..+..+|+..|.+++|.|+.++|..+.+.+ ....+.+.+..+-..+|.|++|.|++.||+..+.-.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 456778999999999999999999887664 446778888999999999999999999999988743
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.32 E-value=1.3e-06 Score=33.41 Aligned_cols=22 Identities=45% Similarity=0.761 Sum_probs=11.9
Q ss_pred HHHHhhhCCCCCCcccHHHHHH
Q psy15703 8 KEAFMLFDKDEDGKVTVAELGV 29 (84)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~~~~~ 29 (84)
..+|..+|.|++|.|+..|+..
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHH
Confidence 3445555555555555555554
No 52
>KOG0038|consensus
Probab=98.30 E-value=3.7e-06 Score=45.26 Aligned_cols=63 Identities=29% Similarity=0.500 Sum_probs=51.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCC-CCCHHH----HHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQ-RPTETE----LRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~-~~~~~~----~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
...+|+.+|-+++++|...++...+..+.. .++.++ +++++...|.+++|++++.+|..++.+
T Consensus 110 ~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 110 AKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred hhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 445688999999999999999999888743 455554 566778889999999999999988875
No 53
>KOG0046|consensus
Probab=98.28 E-value=6.4e-06 Score=52.11 Aligned_cols=70 Identities=30% Similarity=0.486 Sum_probs=60.2
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhcc
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP---TETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~---~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 72 (84)
+++..+...|...| +++|+++..++..++...+... ..++++.++...+.+.+|+|+|++|+.++..+..
T Consensus 16 ~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 16 EELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 35678888999999 9999999999999999876543 4778899999999999999999999998776653
No 54
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.27 E-value=5.1e-07 Score=46.79 Aligned_cols=60 Identities=25% Similarity=0.406 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQ 65 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (84)
...+.-.|..+|.|++|.|+..|+..+...+ .+...=+..++...|.|+++.|++.|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3456667999999999999999988766544 23334467899999999999999999864
No 55
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.19 E-value=6.1e-06 Score=31.55 Aligned_cols=25 Identities=40% Similarity=0.869 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHH
Q psy15703 43 LRDMVNEVDQDGNGTIEFNEFLQMM 67 (84)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~l 67 (84)
++..|..+|.|++|.|++.||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3568999999999999999998764
No 56
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.03 E-value=1.9e-05 Score=31.56 Aligned_cols=26 Identities=35% Similarity=0.727 Sum_probs=23.2
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHH
Q psy15703 43 LRDMVNEVDQDGNGTIEFNEFLQMMS 68 (84)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~l~ 68 (84)
++.+|..+|.+++|.|+.+||..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 57899999999999999999999887
No 57
>KOG4223|consensus
Probab=97.97 E-value=4.9e-05 Score=45.53 Aligned_cols=69 Identities=20% Similarity=0.429 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCH-HHHHHHHHHhCCCCCCceeHHHHHHHHHhhcc
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTE-TELRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 72 (84)
+.+-...|+.-|.+++|.++..+|-.++..-..+.+. -.+...+...|+|++|.|+++||+.=+.....
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~ 231 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEG 231 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccC
Confidence 3455668999999999999999999988664444333 34667888899999999999999987776554
No 58
>KOG4223|consensus
Probab=97.93 E-value=1.6e-05 Score=47.59 Aligned_cols=66 Identities=26% Similarity=0.344 Sum_probs=56.2
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCC
Q psy15703 9 EAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGA 74 (84)
Q Consensus 9 ~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~ 74 (84)
..+...|+|++|+++..+++.++...+......+++.++...|.|.+|++|++|.+.-..-..++.
T Consensus 245 ~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d~FvgSq 310 (325)
T KOG4223|consen 245 QFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEHYDVFVGSQ 310 (325)
T ss_pred HHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhCcceeeeee
Confidence 456678999999999999999998878888888999999999999999999999887655444443
No 59
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.74 E-value=6.2e-05 Score=28.49 Aligned_cols=25 Identities=52% Similarity=0.852 Sum_probs=12.5
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHH
Q psy15703 8 KEAFMLFDKDEDGKVTVAELGVVMR 32 (84)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~~~~~~l~ 32 (84)
..+|..+|.+++|.|+..+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3445555555555555555554443
No 60
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.72 E-value=0.00027 Score=34.50 Aligned_cols=65 Identities=17% Similarity=0.426 Sum_probs=52.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHHhCCC----CCCceeHHHHHHHHHhhc
Q psy15703 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSL-GQ-RPTETELRDMVNEVDQD----GNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~l~~~~ 71 (84)
++..+|..+-. +.+.|+..+|..+|..- +. ..+...+..++..+..+ ..+.+++++|..+|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 46778888855 78999999999999764 33 45788899999998544 468999999999998754
No 61
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.59 E-value=0.00018 Score=27.12 Aligned_cols=27 Identities=33% Similarity=0.767 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 43 LRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
++.++..++.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 467889999999999999999988764
No 62
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.57 E-value=0.00022 Score=31.90 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=25.9
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRS 33 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~ 33 (84)
.++..+|..+|.+++|.|+..+|..++..
T Consensus 25 ~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 25 EEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 46888999999999999999999988764
No 63
>KOG0377|consensus
Probab=97.42 E-value=0.0017 Score=41.01 Aligned_cols=67 Identities=21% Similarity=0.442 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHc-CCCCC-------------------------------------------
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSL-GQRPT------------------------------------------- 39 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~-~~~~~------------------------------------------- 39 (84)
...+..-|+.+|+.+.|+|+...+..++..+ +.+++
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 3467788999999999999999988877653 22221
Q ss_pred ---HHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 40 ---ETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 40 ---~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
++.+..+|..+|.+.+|.|+.+||...+.-.
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~ 576 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLL 576 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHH
Confidence 1234568888999999999999998877643
No 64
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=97.41 E-value=0.0048 Score=33.73 Aligned_cols=65 Identities=20% Similarity=0.380 Sum_probs=49.7
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQ---RPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
+-..|..|.......|+...|..+++..+. .++..+++.+|..+...+..+|+|++|+.+|..+.
T Consensus 4 ~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 4 VFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 334455556677789999999999998643 47788899999998777777899999999988764
No 65
>KOG4251|consensus
Probab=97.40 E-value=0.00014 Score=42.57 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=48.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLG---QRPTETELRDMVNEVDQDGNGTIEFNEFLQMMS 68 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 68 (84)
...+..+|..-|.|.+|+|+..++++.+..-. ......+-...|...|.+++|.|++++|..-+.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 45788899999999999999999998875421 111222334577788999999999999965444
No 66
>KOG0042|consensus
Probab=97.38 E-value=0.00094 Score=43.19 Aligned_cols=73 Identities=29% Similarity=0.410 Sum_probs=64.5
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCC
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGA 74 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~ 74 (84)
+++...+..|..+|.++.|+++..++..+|+..+.+++.+.+..++...+.+-+|.++..+|..++.......
T Consensus 590 ~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 590 EDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCC
Confidence 3566777889999999999999999999999988889999999999999988899999999999998775443
No 67
>KOG4065|consensus
Probab=97.27 E-value=0.0018 Score=33.79 Aligned_cols=58 Identities=26% Similarity=0.473 Sum_probs=42.0
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHc------CC-C--CC-HHH----HHHHHHHhCCCCCCceeHHHHHHH
Q psy15703 9 EAFMLFDKDEDGKVTVAELGVVMRSL------GQ-R--PT-ETE----LRDMVNEVDQDGNGTIEFNEFLQM 66 (84)
Q Consensus 9 ~~f~~~d~~~~g~i~~~~~~~~l~~~------~~-~--~~-~~~----~~~~~~~~d~~~~~~i~~~ef~~~ 66 (84)
+.|...|-+++|.++--++..++... |. + ++ ..+ ++.+++.-|.|++|.|+|-+|+..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 45788899999999999988887543 22 1 22 222 445666668999999999999764
No 68
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.09 E-value=0.0019 Score=29.86 Aligned_cols=30 Identities=23% Similarity=0.467 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHHhhcc
Q psy15703 43 LRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72 (84)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 72 (84)
++.+|..+|.+++|.|+..++..++.....
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~ 31 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGR 31 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcc
Confidence 567999999999999999999999997653
No 69
>KOG2643|consensus
Probab=97.03 E-value=0.00026 Score=44.20 Aligned_cols=55 Identities=16% Similarity=0.349 Sum_probs=42.8
Q ss_pred CCcccHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccC
Q psy15703 19 DGKVTVAELGVVMRS-LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKG 73 (84)
Q Consensus 19 ~g~i~~~~~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~ 73 (84)
.+.|+..+|+.+... .|.+++...++-+|..+|.|+||.++.+||+..+...+-.
T Consensus 402 g~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhr 457 (489)
T KOG2643|consen 402 GASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMHR 457 (489)
T ss_pred CCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHhhc
Confidence 355666666666555 3667776777888889999999999999999999987644
No 70
>KOG1029|consensus
Probab=96.95 E-value=0.002 Score=43.19 Aligned_cols=61 Identities=23% Similarity=0.412 Sum_probs=51.5
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 67 (84)
-+.+..|..+|+...|+++-..-+.+|-..+ ++...+..|+..-|.|+||+++.+||.-.+
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 3567789999999999999998888887655 566677889999999999999999996644
No 71
>KOG0035|consensus
Probab=96.86 E-value=0.0077 Score=40.94 Aligned_cols=81 Identities=25% Similarity=0.238 Sum_probs=62.6
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCH-----HHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCCCCH
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTE-----TELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGE 77 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~~ 77 (84)
+..+++..|..++....|.++..++...+-.+|.+... .++..+....+.+..|+++|.+|...+.+.....+..
T Consensus 745 v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~ 824 (890)
T KOG0035|consen 745 VLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTE 824 (890)
T ss_pred HHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHH
Confidence 57789999999999999999999999999998887654 2334444445666678999999999999887666655
Q ss_pred HHHHhc
Q psy15703 78 DELKEA 83 (84)
Q Consensus 78 ~~~~~~ 83 (84)
..+..+
T Consensus 825 ~r~i~s 830 (890)
T KOG0035|consen 825 LRAILA 830 (890)
T ss_pred HHHHHH
Confidence 554443
No 72
>KOG2243|consensus
Probab=96.72 E-value=0.0048 Score=44.30 Aligned_cols=59 Identities=17% Similarity=0.402 Sum_probs=49.2
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 10 AFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 10 ~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
.|+.+|+++.|.|+..+|..++.. ....++++++.++.-...+.+..++|++|+.-+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 467889999999999999999876 33467788888888888899999999999875543
No 73
>KOG1955|consensus
Probab=96.62 E-value=0.01 Score=38.22 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=53.6
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
||.+-.-.-|+...++..|+|+-.--+.++.... ++-.++..|+...|.+++|-+++.||+..+--+
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 4555566678888899999999777777776544 555788999999999999999999999877543
No 74
>KOG4578|consensus
Probab=96.58 E-value=0.0025 Score=38.84 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=47.3
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 10 AFMLFDKDEDGKVTVAELGVVMRSL-GQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 10 ~f~~~d~~~~g~i~~~~~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
.|..+|+|+++.|++.|++.+=+-+ .....+.=.+.++.+.|.|++-.|++.|+...|..--
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 4889999999999998866543322 2223344467799999999999999999998887543
No 75
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.51 E-value=0.0074 Score=30.04 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=26.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL 34 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~ 34 (84)
..+..+++..|.|++|.|++.+|..++..+
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 568889999999999999999999888764
No 76
>KOG0751|consensus
Probab=96.36 E-value=0.0077 Score=38.72 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=35.3
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQR---PTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
...+|..||+.++|.++.+++..++...... +-..+...+-.++.......++|.+|.+++..+.
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~ 177 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQ 177 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHH
Confidence 4556777777777777777777777653211 1011112222234444455666777766666554
No 77
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.31 E-value=0.011 Score=29.54 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=26.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL 34 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~ 34 (84)
..+..++..+|.+++|.|+..+|..++..+
T Consensus 53 ~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 53 MLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 467888999999999999999999888764
No 78
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.29 E-value=0.018 Score=25.35 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 43 LRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
+..++..++.+++|.|++.+|..++...
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 4567888999999999999999988864
No 79
>KOG2562|consensus
Probab=96.28 E-value=0.034 Score=35.42 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=43.6
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh----CCCCCCceeHHHHHHHHHhhc
Q psy15703 10 AFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEV----DQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 10 ~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~----d~~~~~~i~~~ef~~~l~~~~ 71 (84)
.|..+|++++|.|+.+++...-. ...+.--++.+|... -.-.+|+++|++|+-++....
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred HHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc
Confidence 37788999999999999876432 234455677788832 344678999999999988754
No 80
>KOG0038|consensus
Probab=96.16 E-value=0.028 Score=30.69 Aligned_cols=66 Identities=11% Similarity=0.262 Sum_probs=45.3
Q ss_pred hhCCCCCCcccHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCCCCHH
Q psy15703 13 LFDKDEDGKVTVAELGVVMRSLGQRPT-ETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGED 78 (84)
Q Consensus 13 ~~d~~~~g~i~~~~~~~~l~~~~~~~~-~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~~~ 78 (84)
.|-.++.|.++.++|..++.-++.-.+ .-.+...|+.+|-++++.|.-++....+..+..+.-..+
T Consensus 79 ~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~e 145 (189)
T KOG0038|consen 79 VFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDE 145 (189)
T ss_pred HhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHH
Confidence 345688899998888887766543322 233445677788888888888888888877665544443
No 81
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.16 E-value=0.052 Score=30.29 Aligned_cols=68 Identities=16% Similarity=0.346 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCC---------------------------------------------
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP--------------------------------------------- 38 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~--------------------------------------------- 38 (84)
...|++...-||.|++|.|.+-|--..++.+|.++
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 45677777789999999999888665555443221
Q ss_pred --------CHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 39 --------TETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 39 --------~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
.....+.+|..++..+.+.+++.|...++....
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 124578899999888888899999999888754
No 82
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.14 E-value=0.015 Score=28.91 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=26.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL 34 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~ 34 (84)
..+..++..+|.+++|.|+.++|..++..+
T Consensus 52 ~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 52 GVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 567888999999999999999999887664
No 83
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=96.08 E-value=0.032 Score=27.63 Aligned_cols=28 Identities=14% Similarity=0.431 Sum_probs=24.4
Q ss_pred HHHHHHHHhC-CCCCC-ceeHHHHHHHHHh
Q psy15703 42 ELRDMVNEVD-QDGNG-TIEFNEFLQMMSK 69 (84)
Q Consensus 42 ~~~~~~~~~d-~~~~~-~i~~~ef~~~l~~ 69 (84)
.+..+|..+| .+++| .|+..++..++..
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 4677899997 79999 5999999999987
No 84
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.06 E-value=0.037 Score=27.62 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 41 TELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
..+..+|..+|.+++|.|++.++..++..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 34677889999999999999999999876
No 85
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.99 E-value=0.019 Score=28.35 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSL 34 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~ 34 (84)
...+..+|..+|.+++|.|+.++|..++..+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4568889999999999999999999887654
No 86
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=95.99 E-value=0.02 Score=28.35 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSL 34 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~ 34 (84)
.+++..+++..|.+++|.|+..+|..++..+
T Consensus 50 ~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 50 DAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3567888999999999999999998877653
No 87
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.97 E-value=0.021 Score=27.98 Aligned_cols=30 Identities=10% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCC--CCCCceeHHHHHHHHHhh
Q psy15703 41 TELRDMVNEVDQ--DGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 41 ~~~~~~~~~~d~--~~~~~i~~~ef~~~l~~~ 70 (84)
..+..+|..+|. +++|.|+..++..++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~ 39 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETE 39 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHH
Confidence 346778999999 899999999999998753
No 88
>KOG0169|consensus
Probab=95.90 E-value=0.06 Score=36.18 Aligned_cols=68 Identities=22% Similarity=0.386 Sum_probs=53.7
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhcc
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 72 (84)
.-+..+|...|++++|.++..+...+++.+...+....+..++...+...++++...+|..+......
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~ 203 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK 203 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc
Confidence 34556788889999999999999999988887777777777888777777788888877777665543
No 89
>PF14658 EF-hand_9: EF-hand domain
Probab=95.87 E-value=0.029 Score=26.44 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhCCCCC-CcccHHHHHHHHHH
Q psy15703 4 LDKFKEAFMLFDKDED-GKVTVAELGVVMRS 33 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~-g~i~~~~~~~~l~~ 33 (84)
..++..+...+||++. |.|+.+.|..+|+.
T Consensus 34 e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 34 ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4578888999999998 99999999999875
No 90
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.87 E-value=0.029 Score=28.10 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSL 34 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~ 34 (84)
-..+.+++..+|.|++|.|++.+|..++..+
T Consensus 47 ~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 47 PMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3567889999999999999999999888664
No 91
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.86 E-value=0.03 Score=24.98 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=23.7
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy15703 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSL 34 (84)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~~ 34 (84)
-...+|...|++++|.+...+|..+++.+
T Consensus 22 yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 22 YARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 34568999999999999999999888764
No 92
>KOG2562|consensus
Probab=95.81 E-value=0.035 Score=35.36 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=45.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc-------CC-CCC-HHHHHHHHHHhCCCCCCceeHHHHHH
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL-------GQ-RPT-ETELRDMVNEVDQDGNGTIEFNEFLQ 65 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~-------~~-~~~-~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (84)
..+..+|+.+|.+++|.|+..+++.+.+.. +. +++ .....++++...+...++|++.+|..
T Consensus 351 ~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 351 ASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred cchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 456789999999999999999988776543 22 222 34456677777777789999998865
No 93
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=95.78 E-value=0.027 Score=27.93 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=25.9
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL 34 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~ 34 (84)
..+..++..+|++++|.|+.++|..++..+
T Consensus 52 ~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 52 DAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 467788999999999999999999887654
No 94
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.76 E-value=0.023 Score=29.72 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHH
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVM 31 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l 31 (84)
..+..+|..+|.|++|.|+..+|...+
T Consensus 80 ~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 80 HCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 345678999999999999999999988
No 95
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.74 E-value=0.022 Score=28.39 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=26.5
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcC
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLG 35 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~ 35 (84)
..+..++..+|.+++|.|+..+|..++..++
T Consensus 51 ~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 51 MAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4677889999999999999999998887654
No 96
>KOG4251|consensus
Probab=95.65 E-value=0.048 Score=32.33 Aligned_cols=60 Identities=27% Similarity=0.358 Sum_probs=47.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy15703 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQ 65 (84)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (84)
+.+..=...|.|++|.++..++...+..........++..++..-+.+++.+++.++.+.
T Consensus 282 RkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 282 RKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 334434457999999999999999876666666667788888888999999999998765
No 97
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.62 E-value=0.037 Score=25.32 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=24.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRS 33 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~ 33 (84)
..+..+|..+|.+++|.|+..+|..++..
T Consensus 33 ~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 33 SVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred HHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 45677888999999999999999887754
No 98
>KOG2643|consensus
Probab=95.47 E-value=0.067 Score=34.02 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=24.5
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 15 DKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 15 d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
.++++++++.++|.++++.+ ..+....-|..++...+|.|+-.+|..++..+
T Consensus 296 G~rg~~kLs~deF~~F~e~L----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 296 GKRGNGKLSIDEFLKFQENL----QEEILELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred ccCCCccccHHHHHHHHHHH----HHHHHHHHHHHhCcccccccCHHHHHHHHHHH
Confidence 44555555555555555442 22333334444444444555555555544443
No 99
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.36 E-value=0.039 Score=28.28 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSL 34 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~ 34 (84)
...|.++|...|.+++|+++..+|..++..+
T Consensus 42 ~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 42 RDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 3578889999999999999999999887653
No 100
>KOG4666|consensus
Probab=95.31 E-value=0.11 Score=32.03 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=37.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSLGQR-PTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
.++..|..||.+++|.++..+....+.-++.+ .+...++-.|+.++...||.+.-.+|..+++.
T Consensus 260 ~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 260 KLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 45556777777777777766655555544333 33444555666666666665555555555443
No 101
>KOG0751|consensus
Probab=95.22 E-value=0.1 Score=33.91 Aligned_cols=54 Identities=19% Similarity=0.377 Sum_probs=36.3
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 15 DKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 15 d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
|..++|-|++++|+.+-.-++. +......+|..+|..++|.++++++...+...
T Consensus 84 D~tKDglisf~eF~afe~~lC~--pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 84 DQTKDGLISFQEFRAFESVLCA--PDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred hhcccccccHHHHHHHHhhccC--chHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 5566777888777654333332 24455667778888888888888887777654
No 102
>KOG4666|consensus
Probab=95.16 E-value=0.061 Score=33.08 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=50.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
..++..|+.|+.+.+|.++..++..+++.. .....-.+--+|...+...+++|++.+|-.+....
T Consensus 296 ~iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 296 VIIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHh-cCcceeeccccchhhhcccCcceeHHHHHHHHHhC
Confidence 456778999999999999999988888763 22333344557888888889999999998877653
No 103
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.69 E-value=0.25 Score=24.74 Aligned_cols=64 Identities=25% Similarity=0.447 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHc-------CC----CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSL-------GQ----RPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
.++++..|..+ .+++|.++...+...|..+ +. ......++..|... .....|+..+|+..+..-
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 36788899888 6778999999988887653 21 22456677787775 245679999999988753
No 104
>KOG3555|consensus
Probab=94.50 E-value=0.11 Score=32.26 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=47.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
..+.-+|..+|.|.+|.|+..++..+- ......=++.+|...|...+|.|+-.|+.-.+..
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 457778999999999999988877643 2334445677888999889999999998766553
No 105
>KOG4347|consensus
Probab=94.44 E-value=0.076 Score=35.20 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=44.7
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHH
Q psy15703 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63 (84)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef 63 (84)
-+.+.|+.+|.+.+|.|+.+++...|..+...-..+.+..++..++.+++ ..+-++.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 45678999999999999999999988887766666667778888887777 6655544
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=93.54 E-value=0.8 Score=30.58 Aligned_cols=56 Identities=9% Similarity=0.236 Sum_probs=44.4
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCC
Q psy15703 18 EDGKVTVAELGVVMRSLGQ--RPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGA 74 (84)
Q Consensus 18 ~~g~i~~~~~~~~l~~~~~--~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~ 74 (84)
..|.++..+|..+.+.+.. ..++.++..+|..+..++ +.++.++|..+|.......
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~ 70 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDEL 70 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCc
Confidence 4689999999888777643 336788999999996544 6899999999999877543
No 107
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=93.04 E-value=0.52 Score=22.74 Aligned_cols=31 Identities=10% Similarity=0.281 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHHhhccC
Q psy15703 42 ELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKG 73 (84)
Q Consensus 42 ~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~ 73 (84)
++..+|..+.. +.+.|+.++|..+|....+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~ 31 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGE 31 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhcc
Confidence 36778888965 78899999999999887755
No 108
>KOG1707|consensus
Probab=92.22 E-value=0.25 Score=32.72 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP-TETELRDMVNEVDQDGNGTIEFNEFLQMMS 68 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~-~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 68 (84)
+..+...|..+|.+++|.++..++..++......+ ...- ....--.+..|.+++..|+..|.
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~---~~~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSP---YKDSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCc---ccccceecccceeehhhHHHHHH
Confidence 45677889999999999999999999988753322 1100 00001123668899998887765
No 109
>KOG1029|consensus
Probab=92.09 E-value=1.4 Score=30.56 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=43.5
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy15703 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMS 68 (84)
Q Consensus 11 f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 68 (84)
|..+- -+.|+|+-..-+.++-..+ ++...+..|+...|.|.||+++..||.-.|.
T Consensus 22 F~~Lk-p~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 22 FGQLK-PGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred HhccC-CCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 44333 3579999999888887656 5567788999999999999999999966554
No 110
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=91.53 E-value=0.36 Score=30.46 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.0
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy15703 7 FKEAFMLFDKDEDGKVTVAELGVVMRS 33 (84)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~ 33 (84)
...+|..+|.+++|.|+..+|..+++.
T Consensus 359 ~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 359 SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 367899999999999999999998865
No 111
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=91.37 E-value=0.3 Score=25.59 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy15703 38 PTETELRDMVNEVDQDGNGTIEFNEFLQMMS 68 (84)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 68 (84)
++.+.++.++..+..|..|+|.|.+|+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 5678889999999999999999999988766
No 112
>KOG3866|consensus
Probab=91.29 E-value=0.61 Score=28.78 Aligned_cols=62 Identities=23% Similarity=0.406 Sum_probs=43.0
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHH----cCCCCC-HHHH-----------HHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 9 EAFMLFDKDEDGKVTVAELGVVMRS----LGQRPT-ETEL-----------RDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 9 ~~f~~~d~~~~g~i~~~~~~~~l~~----~~~~~~-~~~~-----------~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
..|...|.|++|+++-.++..++.. +..+.+ .+++ ..++...|.|.+.-|+.++|+..-...
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 3577789999999999998876643 211111 1111 225666799999999999998876654
No 113
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=90.73 E-value=1.2 Score=22.08 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=37.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy15703 19 DGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMS 68 (84)
Q Consensus 19 ~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 68 (84)
+-.+++..|...|.....-....+...+-..+|..+++.||-=||-.+.+
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 35799999999999865444556667788889999999999888766544
No 114
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=90.50 E-value=0.67 Score=25.07 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=30.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh-------CCCCCCceeHHHHHHHHHhhccCC
Q psy15703 19 DGKVTVAELGVVMRSLGQRPTETELRDMVNEV-------DQDGNGTIEFNEFLQMMSKKMKGA 74 (84)
Q Consensus 19 ~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------d~~~~~~i~~~ef~~~l~~~~~~~ 74 (84)
-+.|++.+|.+.=+=+.+ +...+..++..+ ..+..+.|+|+.|..+|..++...
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d 65 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD 65 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC
Confidence 467888888875433322 223445555555 234556899999999999988655
No 115
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=90.00 E-value=1.6 Score=22.31 Aligned_cols=63 Identities=13% Similarity=0.269 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCC---CCCCceeHHHHHHHHHhhc
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQ---DGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~~~i~~~ef~~~l~~~~ 71 (84)
...+.+.|..+-. +|.|++.+|...+ |..-+.+-...+|..+.. -..+.|+-++...+|..+.
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 4567788888777 8999999999877 444556666666666521 2256799999998888653
No 116
>KOG0041|consensus
Probab=89.64 E-value=0.8 Score=26.54 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 42 ELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 42 ~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
++..+|..||.+.+|.|++.|.-.+|..+
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHh
Confidence 46779999999999999999998887754
No 117
>PLN02222 phosphoinositide phospholipase C 2
Probab=89.62 E-value=3.6 Score=27.57 Aligned_cols=64 Identities=14% Similarity=0.332 Sum_probs=47.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHHhCC-CCCCceeHHHHHHHHHhh
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQ--RPTETELRDMVNEVDQ-DGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~l~~~ 70 (84)
.++..+|..+-. .+.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..+|...
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 467778887753 479999999999987543 2456777888887632 235679999999999764
No 118
>KOG0998|consensus
Probab=88.62 E-value=0.22 Score=34.34 Aligned_cols=66 Identities=23% Similarity=0.295 Sum_probs=54.2
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
....+.++|...|.+..|.|+..+...++.. ..+....+..++...+....|.+++.+|...+.-.
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 3456677899999999999999998887765 55777888899999999999999999887665543
No 119
>KOG2871|consensus
Probab=88.42 E-value=0.67 Score=29.20 Aligned_cols=63 Identities=19% Similarity=0.380 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPT-ETELRDMVNEVDQDGNGTIEFNEFLQM 66 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~-~~~~~~~~~~~d~~~~~~i~~~ef~~~ 66 (84)
-..+++.|+.+|+.+.|+|+-.-++.++.......+ ...+..+-...++..-|.|-..+|+.-
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccc
Confidence 356889999999999999999999999988774443 333444444455555555555555443
No 120
>PLN02228 Phosphoinositide phospholipase C
Probab=87.83 E-value=6.3 Score=26.43 Aligned_cols=65 Identities=17% Similarity=0.334 Sum_probs=47.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCC----CCCceeHHHHHHHHHhhc
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQ--RPTETELRDMVNEVDQD----GNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~l~~~~ 71 (84)
.++..+|..+-. .+.++.++|..+|..... ....+.+..++..+... ..|.++.+.|..++....
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~~ 94 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSDT 94 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCcc
Confidence 567777877654 358999999999987532 24456678888887543 346799999999997643
No 121
>KOG1955|consensus
Probab=87.39 E-value=0.89 Score=29.86 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSL 34 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~ 34 (84)
+.+|.++|.+.|.+.+|.++..+|+.++..+
T Consensus 264 i~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 264 IEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred hHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 6789999999999999999999999988654
No 122
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=86.25 E-value=1.4 Score=21.00 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-------CCCCceeHHHHHH
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQ-------DGNGTIEFNEFLQ 65 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~~~i~~~ef~~ 65 (84)
-+.+...|+.+ .+++++|+..+++..|-. +.++-+...+.. ...|.++|..|+.
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 46788899999 777899999999986532 112333333321 2236788888864
No 123
>PLN02230 phosphoinositide phospholipase C 4
Probab=84.76 E-value=9.9 Score=25.74 Aligned_cols=64 Identities=14% Similarity=0.260 Sum_probs=44.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHHhC-------CCCCCceeHHHHHHHHHh
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQ---RPTETELRDMVNEVD-------QDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~---~~~~~~~~~~~~~~d-------~~~~~~i~~~ef~~~l~~ 69 (84)
.++..+|..+-.++ +.++.++|..+|..... ..+...+..++..+- .-..+.++++.|..+|..
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 57788888885444 89999999999988542 234555666665442 113456999999998865
No 124
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=84.03 E-value=3.3 Score=19.61 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 23 TVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
+..++..+++..+..++.+++..++..-+..+--.++=..+..++.++
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 446788889998999999999888887655544444444555555543
No 125
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=83.02 E-value=6.5 Score=22.24 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=41.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc-------CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL-------GQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 66 (84)
+++..+|..++..+.+.++..|+..+++.- |+....-++..++... .+.+|.+.-++...+
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 467889999998888999999999988762 2222233444444443 567888877765443
No 126
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=81.51 E-value=2.1 Score=20.42 Aligned_cols=46 Identities=9% Similarity=0.206 Sum_probs=32.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhcc
Q psy15703 27 LGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72 (84)
Q Consensus 27 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 72 (84)
|..++..+...++.+.+..+...|+.=..++|+-++|+..++.+.+
T Consensus 11 F~~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4444444444566667777777776667889999999998887654
No 127
>PLN02223 phosphoinositide phospholipase C
Probab=81.31 E-value=14 Score=24.80 Aligned_cols=65 Identities=9% Similarity=0.014 Sum_probs=44.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc----C-CCCCHHHHHHHHHHhCCC--------CCCceeHHHHHHHHHhh
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL----G-QRPTETELRDMVNEVDQD--------GNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~----~-~~~~~~~~~~~~~~~d~~--------~~~~i~~~ef~~~l~~~ 70 (84)
..++.+|..+- .+.|.++...+..++.-+ + ...+.++++.++..+-.. ..+.+++++|..+|...
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~ 93 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFST 93 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCc
Confidence 46777888773 557889999999888333 2 245566666666654322 23569999999988764
No 128
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=81.30 E-value=5.8 Score=20.57 Aligned_cols=50 Identities=20% Similarity=0.368 Sum_probs=33.7
Q ss_pred hhhCCCCCCcccHHHHHHHHHHc----------CCCCCHHHHHHHHHHhCCCCCCceeHH
Q psy15703 12 MLFDKDEDGKVTVAELGVVMRSL----------GQRPTETELRDMVNEVDQDGNGTIEFN 61 (84)
Q Consensus 12 ~~~d~~~~g~i~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~d~~~~~~i~~~ 61 (84)
+.+|+..+.+|+.++++..++.. |.+++...+-.++.....++...++..
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~ 69 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTD 69 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHH
Confidence 35789999999999999988763 345556666666665555555444443
No 129
>KOG1265|consensus
Probab=80.35 E-value=19 Score=25.92 Aligned_cols=67 Identities=9% Similarity=0.220 Sum_probs=52.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcC----------CCCCHHHHHHHHHHhCCCC----CCceeHHHHHHHHHhh
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLG----------QRPTETELRDMVNEVDQDG----NGTIEFNEFLQMMSKK 70 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~d~~~----~~~i~~~ef~~~l~~~ 70 (84)
.++..+|..+..++.-+++..++..++..-. .......+..++..+..+. .|+++-+.|+.++.+-
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 4677889888888889999999999986521 2345677888999987664 5899999999988764
Q ss_pred c
Q psy15703 71 M 71 (84)
Q Consensus 71 ~ 71 (84)
.
T Consensus 301 E 301 (1189)
T KOG1265|consen 301 E 301 (1189)
T ss_pred c
Confidence 3
No 130
>KOG2301|consensus
Probab=79.39 E-value=2.3 Score=31.74 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=47.8
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPT----ETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
+.+.+..++..+|++.+|+|+..++...++.+..++. .+. +.+-..+....++.|++.+-+-++...
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 5678889999999999999999999999998754321 111 222223344577889998877766654
No 131
>PLN02952 phosphoinositide phospholipase C
Probab=79.13 E-value=17 Score=24.68 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHHhC-------CCCCCceeHHHHHHHHHh
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQ--RPTETELRDMVNEVD-------QDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~--~~~~~~~~~~~~~~d-------~~~~~~i~~~ef~~~l~~ 69 (84)
..++..+|..+-.+ .+.|+.++|..+|..... ..+.+.+..++..+- ......+++++|..++..
T Consensus 37 r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 37 PDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred hHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 35777888877543 368999999999988533 245566666655431 112345899999998874
No 132
>KOG3449|consensus
Probab=79.02 E-value=7.3 Score=20.32 Aligned_cols=52 Identities=13% Similarity=0.379 Sum_probs=40.5
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy15703 9 EAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQ 65 (84)
Q Consensus 9 ~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (84)
-.|-++...++...+..+++.+|..+|.....+.++.++..+. |+ +.++.+.
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 3466667777888999999999999999999999999998873 32 4555544
No 133
>KOG0169|consensus
Probab=78.81 E-value=19 Score=25.07 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=48.6
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
..+..|+..+..+++.+....+..+...++..+ ++..++..+..+ .+.++..+++.++....
T Consensus 173 ~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 173 KARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred HHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhc
Confidence 455667777888899999999999888877655 566777777555 78899998888888764
No 134
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=77.44 E-value=6.1 Score=18.53 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=19.4
Q ss_pred hhhCCCCCCcccHHHHHHHHHH
Q psy15703 12 MLFDKDEDGKVTVAELGVVMRS 33 (84)
Q Consensus 12 ~~~d~~~~g~i~~~~~~~~l~~ 33 (84)
+++|...+.+|+.+++..+++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4679999999999999998876
No 135
>KOG4301|consensus
Probab=77.20 E-value=7.2 Score=24.62 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=46.8
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhcc
Q psy15703 10 AFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72 (84)
Q Consensus 10 ~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 72 (84)
....+|+.+.|.++.-..+-++..++.....+..+.+|.... +.+|-+.+..|..++..++.
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evls 176 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLS 176 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHc
Confidence 345679999999998888888887766565677777887764 55677888888888877654
No 136
>KOG4004|consensus
Probab=77.11 E-value=1.1 Score=25.92 Aligned_cols=58 Identities=24% Similarity=0.335 Sum_probs=38.9
Q ss_pred HhhhCCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 11 FMLFDKD-EDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 11 f~~~d~~-~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
|-.+|.. .+|+++.-++..+ +. -..++..=+..+|...|.++++.|+++++...+.-.
T Consensus 193 f~qld~~p~d~~~sh~el~pl-~a-p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gik 251 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPL-RA-PLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIK 251 (259)
T ss_pred eccccCCCccccccccccccc-cC-CcccHHhhchhhhhcccCCCCCceeHHHhhcccCcc
Confidence 3445553 3788888776542 22 122344445678888999999999999997766543
No 137
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=77.11 E-value=7.5 Score=19.40 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=34.9
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 18 EDGKVTVAELGVVMRSL--GQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 18 ~~g~i~~~~~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
.+|.++..+...+-..+ ...++......++..+........++.+|+..+....
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF 67 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 37888888866554432 1245666777777777655556677888877776543
No 138
>KOG3555|consensus
Probab=75.84 E-value=3.5 Score=25.98 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=42.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc---CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL---GQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
.+|+.+|..+=.++++......+..+-..+ -.++-+..+-.||..+|.+.++.++..|...+...
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld 278 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD 278 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc
Confidence 477888887755555444444444332221 12344677888999999999999999988665544
No 139
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=73.80 E-value=10 Score=19.32 Aligned_cols=60 Identities=12% Similarity=0.233 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCCCCHHHHH
Q psy15703 22 VTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELK 81 (84)
Q Consensus 22 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~~~~~~ 81 (84)
++..++.-++.-+...++.+++..+...+...+....+-.+.-.++..........+++.
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~ 79 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIE 79 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHH
Confidence 788888888888888899999988888775444444455555566666555555555554
No 140
>KOG4347|consensus
Probab=72.57 E-value=10 Score=25.85 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 41 TELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
.-...+|...|.+.+|-++|.+++.-+...
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l 584 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSIL 584 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHH
Confidence 345678888999999999999999888754
No 141
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=72.49 E-value=4.4 Score=14.56 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=6.2
Q ss_pred CCCCCcccHHHHH
Q psy15703 16 KDEDGKVTVAELG 28 (84)
Q Consensus 16 ~~~~g~i~~~~~~ 28 (84)
.|++|.++.-++.
T Consensus 2 vN~DG~vna~D~~ 14 (21)
T PF00404_consen 2 VNGDGKVNAIDLA 14 (21)
T ss_dssp TTSSSSSSHHHHH
T ss_pred CCCCCcCCHHHHH
Confidence 3455555544443
No 142
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=71.71 E-value=8.9 Score=20.43 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=11.0
Q ss_pred HHHHhCCCCCCceeHHHHHHHH
Q psy15703 46 MVNEVDQDGNGTIEFNEFLQMM 67 (84)
Q Consensus 46 ~~~~~d~~~~~~i~~~ef~~~l 67 (84)
++..||.+++|.|+.-.|...+
T Consensus 102 Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 102 LLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHHHH-TT--SEEEHHHHHHHH
T ss_pred HHHHhCCCCCCeeehhHHHHHH
Confidence 5556666666666666554443
No 143
>KOG4403|consensus
Probab=70.06 E-value=28 Score=22.89 Aligned_cols=71 Identities=11% Similarity=0.245 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCCCCHH
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRS-LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGED 78 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~~~ 78 (84)
.+.++.+-+.+|.+.+|.|+.++-..+++. +.+.-+...-.. .| ...+..|+.++.-..|..-.....+.+
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~---~f-H~dD~~ItVedLWeaW~~Sev~nWT~e 138 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSE---KF-HGDDKHITVEDLWEAWKESEVHNWTNE 138 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhh---hc-cCCccceeHHHHHHHHHhhhhhcchHH
Confidence 456778888899999999999887777776 332222111111 22 224566777776555554333333333
No 144
>KOG4403|consensus
Probab=69.63 E-value=4.9 Score=26.11 Aligned_cols=62 Identities=24% Similarity=0.323 Sum_probs=42.5
Q ss_pred CCCcccHHHHHHHHHHcC----CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCCCCHHH
Q psy15703 18 EDGKVTVAELGVVMRSLG----QRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDE 79 (84)
Q Consensus 18 ~~g~i~~~~~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~~~~ 79 (84)
++...+..+|+.+....+ ..+.-+.++.+-..+|.|.+|.|+.+|--.+++.-+...+....
T Consensus 41 gds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~k 106 (575)
T KOG4403|consen 41 GDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRK 106 (575)
T ss_pred CCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhh
Confidence 344455566655443322 23455678888899999999999999988888887766554443
No 145
>KOG0040|consensus
Probab=69.03 E-value=32 Score=26.65 Aligned_cols=47 Identities=26% Similarity=0.380 Sum_probs=33.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHHhCC
Q psy15703 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSL--GQRPTETELRDMVNEVDQ 52 (84)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~~--~~~~~~~~~~~~~~~~d~ 52 (84)
.+.......||+.+|+|+..++-.+|-.- ....+.+.+...|..++.
T Consensus 2297 ~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2297 EFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA 2345 (2399)
T ss_pred hHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc
Confidence 56777788999999999999887766432 223455567777777766
No 146
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=66.14 E-value=22 Score=20.29 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=22.9
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q psy15703 15 DKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVD 51 (84)
Q Consensus 15 d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d 51 (84)
..+.+|+++.+++...+..-+...+.+.+..+...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4677899999999988888666677888888877654
No 147
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.10 E-value=20 Score=19.71 Aligned_cols=59 Identities=17% Similarity=0.431 Sum_probs=37.8
Q ss_pred HHhhhCCCCCCcccHHH---HHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 10 AFMLFDKDEDGKVTVAE---LGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 10 ~f~~~d~~~~g~i~~~~---~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
+|+..+. +|.++..+ |+.+++. .+.++...+..++.....-+...+++..|...+.+.+
T Consensus 35 lf~Vm~A--DG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~L 96 (148)
T COG4103 35 LFHVMEA--DGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHL 96 (148)
T ss_pred HHHHHhc--ccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4555554 45666555 4444444 4456777778888777666667788888887777554
No 148
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=64.17 E-value=14 Score=17.20 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=30.1
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC
Q psy15703 18 EDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDG 54 (84)
Q Consensus 18 ~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 54 (84)
.++.++...+...+..-+..++...++..+..++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567899999999988888888888888888876554
No 149
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=63.62 E-value=10 Score=21.73 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHH
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETEL 43 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~ 43 (84)
.+.++.+|..||+.+--.++..++..++...+.--++-.+
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI 93 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKI 93 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHH
Confidence 4578889999999999999999999998876654443333
No 150
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=63.06 E-value=26 Score=19.92 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=27.1
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q psy15703 16 KDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVD 51 (84)
Q Consensus 16 ~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d 51 (84)
.+.+|+++.+++...++.-+...+.+.+..+...-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 567899999999988876555677777777766543
No 151
>KOG1707|consensus
Probab=63.03 E-value=47 Score=22.81 Aligned_cols=66 Identities=24% Similarity=0.286 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHh---CC--CCCCceeHHHHHHHHHh
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSL-GQRPTETELRDMVNEV---DQ--DGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~-~~~~~~~~~~~~~~~~---d~--~~~~~i~~~ef~~~l~~ 69 (84)
+..+.++|...|.+.+|.++-.++-..=+.. +.++....+..+-... -. -.++.++...|+-+-.-
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 5678889999999999999999877654442 4455554443333332 11 22456677777655443
No 152
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=59.57 E-value=17 Score=16.67 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=25.4
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy15703 20 GKVTVAELGVVMRSLGQRPTETELRDMVNEV 50 (84)
Q Consensus 20 g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 50 (84)
-.++.+++...+..++..++..++..++...
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4578889999999988888888887777765
No 153
>PF03963 FlgD: Flagellar hook capping protein - N-terminal region; InterPro: IPR005648 FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum []. It appears to act as a hook-capping protein to enable assembly of hook protein subunits [].
Probab=59.34 E-value=17 Score=17.77 Aligned_cols=25 Identities=16% Similarity=0.539 Sum_probs=18.8
Q ss_pred CCCCCceeHHHHHHHHHhhccCCCC
Q psy15703 52 QDGNGTIEFNEFLQMMSKKMKGADG 76 (84)
Q Consensus 52 ~~~~~~i~~~ef~~~l~~~~~~~~~ 76 (84)
....+.++.++|+.+|...+...+.
T Consensus 25 ~~~~~~l~~d~FLkLLvaQLqnQDP 49 (81)
T PF03963_consen 25 SSSNSSLDQDDFLKLLVAQLQNQDP 49 (81)
T ss_pred CCCcccccHHHHHHHHHHHHhcCCC
Confidence 3455678899999999988876543
No 154
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.11 E-value=14 Score=21.07 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVN 48 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 48 (84)
...++.+|..||+..-...+..++..++...+.--++..++.++.
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~ 96 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIA 96 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHH
Confidence 457888999999998888899999988877665445544444444
No 155
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=58.97 E-value=42 Score=20.98 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy15703 40 ETELRDMVNE 49 (84)
Q Consensus 40 ~~~~~~~~~~ 49 (84)
++++-.++..
T Consensus 305 Reeal~~v~~ 314 (343)
T TIGR03573 305 REEAIELVKE 314 (343)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 156
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=58.89 E-value=20 Score=17.33 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=20.7
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q psy15703 18 EDGKVTVAELGVVMRSLGQRPTETELRDMVNEVD 51 (84)
Q Consensus 18 ~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d 51 (84)
..|+|+..++..+|... ..+...+..++..+.
T Consensus 18 ~~G~lT~~eI~~~L~~~--~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPED--DLDPEQIDEIYDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCcc--CCCHHHHHHHHHHHH
Confidence 47999999999888643 366678888888774
No 157
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=58.38 E-value=19 Score=16.90 Aligned_cols=32 Identities=16% Similarity=0.502 Sum_probs=25.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy15703 19 DGKVTVAELGVVMRSLGQRPTETELRDMVNEV 50 (84)
Q Consensus 19 ~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 50 (84)
+-.|+.+-++..+.++|..++...++.+....
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34578888888888899999888888877654
No 158
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=57.68 E-value=13 Score=14.73 Aligned_cols=16 Identities=44% Similarity=0.671 Sum_probs=11.9
Q ss_pred CCceeHHHHHHHHHhh
Q psy15703 55 NGTIEFNEFLQMMSKK 70 (84)
Q Consensus 55 ~~~i~~~ef~~~l~~~ 70 (84)
.|+|++.+++.+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 4678888888777765
No 159
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=57.08 E-value=16 Score=15.58 Aligned_cols=29 Identities=14% Similarity=0.352 Sum_probs=13.8
Q ss_pred HHHHHHHhhhC-C-CCCCcccHHHHHHHHHH
Q psy15703 5 DKFKEAFMLFD-K-DEDGKVTVAELGVVMRS 33 (84)
Q Consensus 5 ~~~~~~f~~~d-~-~~~g~i~~~~~~~~l~~ 33 (84)
..+..+|..+- . .....++..+++..+..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34444454442 1 22355666666655543
No 160
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=56.68 E-value=24 Score=17.39 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=29.1
Q ss_pred HHHHH-cCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 29 VVMRS-LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 29 ~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
.+|.. .|-..+.+.++.+-+.++......|+|+|.+.+....
T Consensus 36 ~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~~ 78 (82)
T PF11020_consen 36 TWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALGV 78 (82)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44433 4666777777777777776677789999988776543
No 161
>PF07199 DUF1411: Protein of unknown function (DUF1411); InterPro: IPR009850 This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Probab=56.29 E-value=38 Score=19.62 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
+..+.+....++|...+.=..+.+...|..-+...-...+..-+..++......-.++.|...+..+
T Consensus 121 l~~iL~~It~y~P~~~~f~vseNIVk~LNK~~~i~lp~~LA~~L~~i~tgk~~~~e~~~f~d~fa~~ 187 (194)
T PF07199_consen 121 LSKILKHITNYDPKNPIFAVSENIVKKLNKKGTIELPEDLAQQLCQIDTGKMRGYEWEVFTDCFADY 187 (194)
T ss_pred HHHHHHHHHccCCCCcchhhHHHHHHHHcCCCCccchHHHHHHHhccccCccccchHHHHHHHHHHH
Confidence 3334444455566655555555555555443322222333334444444444444444454444443
No 162
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=56.06 E-value=20 Score=16.49 Aligned_cols=25 Identities=8% Similarity=0.345 Sum_probs=17.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHH
Q psy15703 21 KVTVAELGVVMRSLGQRPTETELRD 45 (84)
Q Consensus 21 ~i~~~~~~~~l~~~~~~~~~~~~~~ 45 (84)
.|+.++|..+|+......+.+++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4678888888888776777766554
No 163
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=56.00 E-value=18 Score=19.94 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=25.3
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSL 34 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~ 34 (84)
.++..+.......|.++-++++..+++.++-.+
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 345666677777888888889999999887554
No 164
>PF14294 DUF4372: Domain of unknown function (DUF4372)
Probab=55.49 E-value=24 Score=17.04 Aligned_cols=46 Identities=11% Similarity=0.291 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHhCCCCC--CceeHHHHHHHHHhhccCCCCHHHHHhc
Q psy15703 38 PTETELRDMVNEVDQDGN--GTIEFNEFLQMMSKKMKGADGEDELKEA 83 (84)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~--~~i~~~ef~~~l~~~~~~~~~~~~~~~~ 83 (84)
++...++.+.+.+..+.. ..-+++.|+.++-..+...+...++..+
T Consensus 14 i~~~~f~~~v~k~~~d~~~k~f~~~~ql~~mlfaQL~~~~SLRdI~~~ 61 (76)
T PF14294_consen 14 IPRHEFERIVKKYGGDRYVKKFTCWDQLVAMLFAQLTGRESLRDIEDC 61 (76)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHcccCcHHHHHHH
Confidence 566777777777755542 3446777888888888877777766543
No 165
>KOG1954|consensus
Probab=54.74 E-value=32 Score=22.47 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=33.7
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy15703 19 DGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQ 65 (84)
Q Consensus 19 ~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (84)
+|+|+-..-+..+- +..++.+.+-.++...|.+.+|.++=+||.-
T Consensus 457 ~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 457 NGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred CceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 57777555554443 3456777888999999999999999999953
No 166
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=54.22 E-value=13 Score=21.35 Aligned_cols=45 Identities=9% Similarity=0.279 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVN 48 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 48 (84)
...++.+|..||+..--.++.+++..++...+.--++..++.++.
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~ 97 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIG 97 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHH
Confidence 457888999999988888889999988876655444444444443
No 167
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=53.09 E-value=23 Score=16.27 Aligned_cols=16 Identities=13% Similarity=0.356 Sum_probs=6.1
Q ss_pred CCCCCHHHHHHHHHHh
Q psy15703 35 GQRPTETELRDMVNEV 50 (84)
Q Consensus 35 ~~~~~~~~~~~~~~~~ 50 (84)
|.+++.+++..++..+
T Consensus 12 g~~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 12 GEDLSREEAKAAFDAI 27 (66)
T ss_dssp T----HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3445555555555544
No 168
>PRK00523 hypothetical protein; Provisional
Probab=52.44 E-value=27 Score=16.82 Aligned_cols=31 Identities=16% Similarity=0.474 Sum_probs=24.6
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy15703 20 GKVTVAELGVVMRSLGQRPTETELRDMVNEV 50 (84)
Q Consensus 20 g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 50 (84)
=.|+.+-++..+.++|..++...++.+....
T Consensus 38 Ppine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 38 PPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred cCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3577788888888888888888888877665
No 169
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=50.87 E-value=32 Score=17.15 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=39.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 19 DGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 19 ~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
-..++..++...-++.+.+++.+.+..+...+-.+.-+-.+-.+=..++..+
T Consensus 12 ln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 12 LNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred HhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999988865555555555555555554
No 170
>PHA02105 hypothetical protein
Probab=50.65 E-value=26 Score=16.11 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHHc---CCCCCHHHHHHHHHHhCCCC--CCceeHHHHHHHHH
Q psy15703 21 KVTVAELGVVMRSL---GQRPTETELRDMVNEVDQDG--NGTIEFNEFLQMMS 68 (84)
Q Consensus 21 ~i~~~~~~~~l~~~---~~~~~~~~~~~~~~~~d~~~--~~~i~~~ef~~~l~ 68 (84)
+++++++..++..- ..++..+.++.+-..+.... --.++|++|-.++-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 46788888887653 34566666777666665443 34578998866543
No 171
>KOG4286|consensus
Probab=49.88 E-value=45 Score=23.71 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=41.9
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy15703 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67 (84)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 67 (84)
...+..||+.++|.|..-+|+-.+-.++..+..+..+.+|.....++...+ -..|..++
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL 531 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLL 531 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHH
Confidence 345678999999999999999888777766777777788888865544332 33444333
No 172
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=49.07 E-value=36 Score=17.23 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCC
Q psy15703 41 TELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGA 74 (84)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~ 74 (84)
+.++.++... -+|.|+-+||..-+...+++.
T Consensus 26 ~~Vr~LV~~L---~~~~i~~EeF~~~Lq~~lns~ 56 (92)
T smart00549 26 ERVRTLVLGL---VNGTITAEEFTSRLQEALNSP 56 (92)
T ss_pred HHHHHHHHHH---HhCCCCHHHHHHHHHHHHcCC
Confidence 3445544444 367899999998888776654
No 173
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=48.98 E-value=25 Score=15.31 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=26.2
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVN 48 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 48 (84)
+|+..|...|.. +.+++..+...+...++ ++...+...|.
T Consensus 10 ~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 49 (57)
T PF00046_consen 10 EQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQ 49 (57)
T ss_dssp HHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCHH
Confidence 456777777764 56778788777777776 44455554443
No 174
>KOG0113|consensus
Probab=48.20 E-value=35 Score=21.28 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCCCCHHHHHhcC
Q psy15703 41 TELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84 (84)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~~~~~~~~f 84 (84)
..+..-+..++.+.+-.+.=+-|.+++..-++-...+.++.+-|
T Consensus 79 ~~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF 122 (335)
T KOG0113|consen 79 HKLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREF 122 (335)
T ss_pred HHHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHH
Confidence 34666777788888877777788888877776666666665543
No 175
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=48.19 E-value=9.4 Score=21.70 Aligned_cols=46 Identities=24% Similarity=0.447 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNE 49 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 49 (84)
...++.+|..||+..-..++.+++..++...+.--+...++.++..
T Consensus 48 r~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~N 93 (179)
T PF03352_consen 48 REAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINN 93 (179)
T ss_dssp HHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 4578889999999888888888888887766655555555554443
No 176
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=48.03 E-value=41 Score=17.65 Aligned_cols=50 Identities=10% Similarity=0.203 Sum_probs=36.0
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy15703 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQ 65 (84)
Q Consensus 11 f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (84)
|-..-..++..++.+++..+++..|.......+..++..+. ..+..+.+.
T Consensus 9 YlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 9 YLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 44444556667999999999999999888888887777773 134555544
No 177
>PLN02228 Phosphoinositide phospholipase C
Probab=47.47 E-value=86 Score=21.43 Aligned_cols=35 Identities=17% Similarity=0.456 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhccC
Q psy15703 37 RPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKG 73 (84)
Q Consensus 37 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~ 73 (84)
..++.++..+|..+..+ +.++.++|..++......
T Consensus 20 ~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~ 54 (567)
T PLN02228 20 REPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGE 54 (567)
T ss_pred CCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCC
Confidence 44667788888888643 579999998888877654
No 178
>PLN02230 phosphoinositide phospholipase C 4
Probab=47.35 E-value=63 Score=22.20 Aligned_cols=34 Identities=9% Similarity=0.251 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhcc
Q psy15703 38 PTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72 (84)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 72 (84)
.++.++..+|..+..++ +.++.++|..+|.....
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~ 59 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGG 59 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCC
Confidence 35678889999996554 78999999999988763
No 179
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=46.37 E-value=23 Score=17.17 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=14.6
Q ss_pred CCCCCCceeHHHHHHHHH
Q psy15703 51 DQDGNGTIEFNEFLQMMS 68 (84)
Q Consensus 51 d~~~~~~i~~~ef~~~l~ 68 (84)
..+..|.|++..|+..+.
T Consensus 12 ~~n~~G~iTl~gfLa~W~ 29 (76)
T PF08355_consen 12 VTNEKGWITLQGFLAQWS 29 (76)
T ss_pred EEcCCCcCcHHHHHHHHH
Confidence 356789999999988776
No 180
>KOG0998|consensus
Probab=46.31 E-value=25 Score=24.97 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=49.2
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
+..+....|..+.+. .|.++-...+.++..-. ++....-.++...|.+.+|.++..+|...+.-.
T Consensus 127 e~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~ 191 (847)
T KOG0998|consen 127 EQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLI 191 (847)
T ss_pred HHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChhhhccccccccccccCCCChhhhhhhhhHH
Confidence 346677778888876 78999888888776544 455566678888999999999999997655543
No 181
>PF14164 YqzH: YqzH-like protein
Probab=45.67 E-value=35 Score=16.07 Aligned_cols=29 Identities=10% Similarity=0.073 Sum_probs=19.4
Q ss_pred HHHHHHHhhhCCC-CCCcccHHHHHHHHHH
Q psy15703 5 DKFKEAFMLFDKD-EDGKVTVAELGVVMRS 33 (84)
Q Consensus 5 ~~~~~~f~~~d~~-~~g~i~~~~~~~~l~~ 33 (84)
+.+++.|+.+..+ ..-.++..+++.+.+.
T Consensus 8 Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~ 37 (64)
T PF14164_consen 8 KMIINCLRQYGYDVECMPLSDEEWEELCKH 37 (64)
T ss_pred HHHHHHHHHhCCcccCCCCCHHHHHHHHHH
Confidence 4566778888766 5677777776665544
No 182
>COG5562 Phage envelope protein [General function prediction only]
Probab=43.98 E-value=23 Score=19.30 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=17.4
Q ss_pred HHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 46 MVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 46 ~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
+.........|+.+|++|+..+..
T Consensus 77 i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 77 IKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHh
Confidence 444445567899999999987653
No 183
>PRK01844 hypothetical protein; Provisional
Probab=41.56 E-value=44 Score=16.11 Aligned_cols=30 Identities=20% Similarity=0.524 Sum_probs=24.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy15703 21 KVTVAELGVVMRSLGQRPTETELRDMVNEV 50 (84)
Q Consensus 21 ~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 50 (84)
.|+.+-++..+.++|..++...++.+....
T Consensus 38 pine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 38 PINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 577788888888888888888888877665
No 184
>KOG1264|consensus
Probab=41.20 E-value=44 Score=24.15 Aligned_cols=64 Identities=11% Similarity=0.286 Sum_probs=41.9
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh--CCCCCCceeHHHHHHHHHhhccC
Q psy15703 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEV--DQDGNGTIEFNEFLQMMSKKMKG 73 (84)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~--d~~~~~~i~~~ef~~~l~~~~~~ 73 (84)
++.+-..|......++..+++.++.......+... .+...+ +.-..+.++|.+|-.+...++-+
T Consensus 147 rk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~k--fl~e~~ted~~~k~dlsf~~f~~ly~~lmfs 212 (1267)
T KOG1264|consen 147 RKQIYSVDQTRENSISARDLKTILPQVNFKVSSAK--FLKEKFTEDGARKDDLSFEQFHLLYKKLMFS 212 (1267)
T ss_pred HhhheeccchhhhheeHHhhhcccccceEEechHH--HHHHHHhHhhhccccccHHHHHHHHHHHhhc
Confidence 34455567667778888998888877665544322 222333 23456789999999888877643
No 185
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=41.15 E-value=57 Score=17.24 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=22.7
Q ss_pred HHHHhCCCCCCceeHHHHHHHHHhhccCCCCH
Q psy15703 46 MVNEVDQDGNGTIEFNEFLQMMSKKMKGADGE 77 (84)
Q Consensus 46 ~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~~ 77 (84)
+....+...++++.-+.|...+...+...+..
T Consensus 69 I~~~L~~~~~~~~~~~~~~~~L~~~~~~~~ae 100 (120)
T PF09821_consen 69 IRRVLRERPNHRLPEERFLDELEDHFSPEEAE 100 (120)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHCChhHHH
Confidence 44445556788899999999998887544443
No 186
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=41.04 E-value=25 Score=17.96 Aligned_cols=31 Identities=23% Similarity=0.538 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCCCCCceeHHHHHHHHHhhccCC
Q psy15703 41 TELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGA 74 (84)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~ 74 (84)
+.++.++... -+|.|+.+||..-+...+++.
T Consensus 27 ~~Vr~LV~~L---~~~~i~~EeF~~~Lq~~lns~ 57 (96)
T PF07531_consen 27 ENVRELVQNL---VDGKIEAEEFTSKLQEELNSS 57 (96)
T ss_dssp HHHHHHHHHH---HTTSS-HHHHHHHHHHHCTSS
T ss_pred HHHHHHHHHH---HcCCCCHHHHHHHHHHHhcCC
Confidence 3444444444 357899999999888877654
No 187
>KOG0506|consensus
Probab=40.98 E-value=74 Score=21.47 Aligned_cols=40 Identities=25% Similarity=0.561 Sum_probs=30.4
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy15703 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEV 50 (84)
Q Consensus 11 f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 50 (84)
|..+-...++.++.-.|-.+|++.|..-+.+.+..+++.+
T Consensus 92 FyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~m 131 (622)
T KOG0506|consen 92 FYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEM 131 (622)
T ss_pred hHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHH
Confidence 5555445579999999999999999887777776666654
No 188
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=40.39 E-value=70 Score=18.12 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=14.9
Q ss_pred CCCCCcccHHHHHHHHHHcCCC
Q psy15703 16 KDEDGKVTVAELGVVMRSLGQR 37 (84)
Q Consensus 16 ~~~~g~i~~~~~~~~l~~~~~~ 37 (84)
.+++|.+.+--+..++...|.+
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCCCC
Confidence 4667777777777777666653
No 189
>KOG0455|consensus
Probab=38.93 E-value=64 Score=19.93 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=26.7
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCC
Q psy15703 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPT 39 (84)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~ 39 (84)
+..+|..|-..+.|.+++.++.++.+.+|+..+
T Consensus 180 LsYifne~s~gk~~~~sfsdvVk~AKklGYTEP 212 (364)
T KOG0455|consen 180 LSYIFNELSDGKPGTLSFSDVVKAAKKLGYTEP 212 (364)
T ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHHcCCCCC
Confidence 455788888777899999999999999987543
No 190
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=38.59 E-value=31 Score=13.42 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=13.9
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVM 31 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l 31 (84)
++..+...+. .|-|+.++|...-
T Consensus 4 ~L~~L~~l~~------~G~IseeEy~~~k 26 (31)
T PF09851_consen 4 RLEKLKELYD------KGEISEEEYEQKK 26 (31)
T ss_pred HHHHHHHHHH------cCCCCHHHHHHHH
Confidence 4455555554 5777777776543
No 191
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=38.46 E-value=37 Score=14.33 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=11.6
Q ss_pred CceeHHHHHHHHHhhccC
Q psy15703 56 GTIEFNEFLQMMSKKMKG 73 (84)
Q Consensus 56 ~~i~~~ef~~~l~~~~~~ 73 (84)
+.++..+....+..++..
T Consensus 17 ~~~~~~~v~~~v~~Ll~~ 34 (47)
T PF02671_consen 17 GRISRSEVIEEVSELLRG 34 (47)
T ss_dssp TCSCHHHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHcc
Confidence 566777776666666543
No 192
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.39 E-value=50 Score=15.85 Aligned_cols=31 Identities=16% Similarity=0.496 Sum_probs=22.1
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy15703 20 GKVTVAELGVVMRSLGQRPTETELRDMVNEV 50 (84)
Q Consensus 20 g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 50 (84)
=.|+.+-++..+.++|..++...+++++...
T Consensus 37 Ppine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 37 PPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3567777777777778777777777766554
No 193
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=38.35 E-value=39 Score=14.54 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=25.3
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVN 48 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 48 (84)
++..|..+|.. +.+.+..+...+...++ ++...+...|.
T Consensus 11 ~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~ 49 (59)
T cd00086 11 QLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQ 49 (59)
T ss_pred HHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 46667777765 45777788777777766 44455555444
No 194
>PRK11911 flgD flagellar basal body rod modification protein; Provisional
Probab=38.09 E-value=46 Score=18.24 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=16.9
Q ss_pred CCCCCceeHHHHHHHHHhhccCCCC
Q psy15703 52 QDGNGTIEFNEFLQMMSKKMKGADG 76 (84)
Q Consensus 52 ~~~~~~i~~~ef~~~l~~~~~~~~~ 76 (84)
......++.++|++++...+...+.
T Consensus 20 ~~~~~~L~~d~FLkLLvaQLqnQDP 44 (140)
T PRK11911 20 SSVSKTLGKDDFMKLFLTSLQYQDP 44 (140)
T ss_pred CCcccccCHHHHHHHHHHHHhcCCC
Confidence 3344567788888888887766543
No 195
>PTZ00124 adenosine deaminase; Provisional
Probab=37.92 E-value=1.1e+02 Score=19.54 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=28.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 19 DGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 19 ~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
+|.|++.-+..+.+.-+..++. ....+...+..... .-++.+|+..+...
T Consensus 45 dGsi~~~tl~~La~~~~~~~~~-~~~~l~~~~~~~~~-~~~L~~fl~~f~~~ 94 (362)
T PTZ00124 45 DLCFSVDFFLSCIRKYNLQPNL-SDEEILDYYLFAKG-GKSLGEFVEKAIRV 94 (362)
T ss_pred cCCCCHHHHHHHHHHcCCCCCC-CHHHHHHHHhcccC-CCCHHHHHHHHHHH
Confidence 6889988888888776655532 12223333322211 12677777766544
No 196
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=37.92 E-value=46 Score=15.22 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=18.6
Q ss_pred chHHHHHHHHhhhCCCCCCc----ccHHHHHHHHHHcCC
Q psy15703 2 KYLDKFKEAFMLFDKDEDGK----VTVAELGVVMRSLGQ 36 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~----i~~~~~~~~l~~~~~ 36 (84)
+|+..+...|.. .|+ .+..+...+...+|.
T Consensus 11 ~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl 44 (58)
T TIGR01565 11 EQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGV 44 (58)
T ss_pred HHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCC
Confidence 466677777754 455 666666666666553
No 197
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=37.88 E-value=72 Score=17.49 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=12.8
Q ss_pred eeHHHHHHHHHhhccCC
Q psy15703 58 IEFNEFLQMMSKKMKGA 74 (84)
Q Consensus 58 i~~~ef~~~l~~~~~~~ 74 (84)
-+|++++.++..++...
T Consensus 43 ~~~~~mL~~ln~i~t~A 59 (141)
T PF12588_consen 43 RDYDEMLQLLNHIMTTA 59 (141)
T ss_pred ccHHHHHHHHHHHHhhC
Confidence 38888888888877554
No 198
>PRK06009 flgD flagellar basal body rod modification protein; Reviewed
Probab=37.45 E-value=49 Score=18.15 Aligned_cols=22 Identities=27% Similarity=0.662 Sum_probs=16.6
Q ss_pred CCceeHHHHHHHHHhhccCCCC
Q psy15703 55 NGTIEFNEFLQMMSKKMKGADG 76 (84)
Q Consensus 55 ~~~i~~~ef~~~l~~~~~~~~~ 76 (84)
...++.++|++++...+...+.
T Consensus 30 ~~~L~~d~FLkLLvaQLqnQDP 51 (140)
T PRK06009 30 KASVNYDSFLQLLIAQMKNQDP 51 (140)
T ss_pred ccccCHHHHHHHHHHHHhcCCC
Confidence 4568888999988888766543
No 199
>PRK09358 adenosine deaminase; Provisional
Probab=35.91 E-value=1.1e+02 Score=18.94 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=27.6
Q ss_pred CCcccHHHHHHHHHHcCCCCCH---HHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy15703 19 DGKVTVAELGVVMRSLGQRPTE---TELRDMVNEVDQDGNGTIEFNEFLQMMS 68 (84)
Q Consensus 19 ~g~i~~~~~~~~l~~~~~~~~~---~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 68 (84)
+|.++..-+..+.+.-+.+++. +.+.. +.. .....++.+|+..+.
T Consensus 20 ~Gs~~~~~l~~l~~~~~~~~p~~~~~~~~~-~r~----~~~~~~l~~~l~~~~ 67 (340)
T PRK09358 20 DGSLRPETILELARRNGIALPATDVEELPW-VRA----AYDFRDLQSFLDKYD 67 (340)
T ss_pred cCCCCHHHHHHHHHHcCCCCCCCCHHHHhh-hcc----cccCCCHHHHHHHHH
Confidence 6899999999988887766542 33322 121 112346777776554
No 200
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.89 E-value=86 Score=17.83 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=33.9
Q ss_pred hhhCCCCCCcccHHHHHHHHHHc----------CCCCCHHHHHH-HHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 12 MLFDKDEDGKVTVAELGVVMRSL----------GQRPTETELRD-MVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 12 ~~~d~~~~g~i~~~~~~~~l~~~----------~~~~~~~~~~~-~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
+.++...+-+++.+++....+.. |.+++.+.+-. ++..-.+++.. +--..|+.-+...+
T Consensus 19 RLYnT~TSTYVTL~dla~mVk~gedF~V~DAKsgeDiT~sVLtQIIfEeE~k~G~~-llpi~fLrQlI~fY 88 (193)
T COG5394 19 RLYNTGTSTYVTLEDLAQMVKEGEDFRVQDAKSGEDITHSVLTQIIFEEENKGGQN-LLPISFLRQLISFY 88 (193)
T ss_pred hhcccCCceeeeHHHHHHHHhcCCceEEeeccccchhhHHHHHHHHHHHhccCCCc-cccHHHHHHHHHHH
Confidence 45788888999999999988763 33444554433 33333334433 32334555554444
No 201
>KOG1785|consensus
Probab=35.85 E-value=84 Score=20.69 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=31.6
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHH
Q psy15703 19 DGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63 (84)
Q Consensus 19 ~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef 63 (84)
.-.++|..|.++|.......+..+.-.+-..+|...++.|+--||
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEF 232 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEF 232 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehh
Confidence 467899999999988654444445555666678888888765544
No 202
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=35.64 E-value=56 Score=15.58 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=12.4
Q ss_pred CCCcccHHHHHHHHHH
Q psy15703 18 EDGKVTVAELGVVMRS 33 (84)
Q Consensus 18 ~~g~i~~~~~~~~l~~ 33 (84)
..|++..++|..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 3688888888887754
No 203
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=35.31 E-value=51 Score=15.07 Aligned_cols=14 Identities=0% Similarity=0.152 Sum_probs=7.0
Q ss_pred HHHHHHHHhhhCCC
Q psy15703 4 LDKFKEAFMLFDKD 17 (84)
Q Consensus 4 ~~~~~~~f~~~d~~ 17 (84)
+.-+..++..++..
T Consensus 9 l~Lve~LwdSL~~~ 22 (63)
T TIGR02574 9 IQLVEDIWDSIAAE 22 (63)
T ss_pred HHHHHHHHHHhccC
Confidence 33444555555543
No 204
>PRK06792 flgD flagellar basal body rod modification protein; Validated
Probab=34.73 E-value=47 Score=19.21 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=18.6
Q ss_pred CCCCceeHHHHHHHHHhhccCCCC
Q psy15703 53 DGNGTIEFNEFLQMMSKKMKGADG 76 (84)
Q Consensus 53 ~~~~~i~~~ef~~~l~~~~~~~~~ 76 (84)
...+.++.++|+.+|...+...+.
T Consensus 46 ~~~~~LgkddFLkLLvaQLqnQDP 69 (190)
T PRK06792 46 KTPGIMDKDDFLKLFLASFQHQDP 69 (190)
T ss_pred cCccccCHHHHHHHHHHHHhcCCC
Confidence 345778999999999988876544
No 205
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=34.56 E-value=47 Score=18.24 Aligned_cols=21 Identities=14% Similarity=0.406 Sum_probs=17.1
Q ss_pred chHHHHHHHHhhhCCCCCCcc
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKV 22 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i 22 (84)
.|+.++..+|..++.+.+|.-
T Consensus 47 ~qi~rLe~if~~lg~~~~~~~ 67 (147)
T cd07909 47 GQVERLEQIFESLGEKPEGKK 67 (147)
T ss_pred HHHHHHHHHHHHcCCCCccCc
Confidence 578999999999988776644
No 206
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=34.27 E-value=74 Score=16.58 Aligned_cols=56 Identities=14% Similarity=0.342 Sum_probs=39.7
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 11 f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
|-..-..++..++.+++..+++..|.......+..+++.+. ..+..+.+.--...+
T Consensus 7 ylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~-----GKdi~eLIa~g~~kl 62 (109)
T cd05833 7 YLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE-----GKDVEELIAAGKEKL 62 (109)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHHhHhhh
Confidence 44444556678999999999999998888877777777663 245666666554443
No 207
>KOG1265|consensus
Probab=32.65 E-value=2.1e+02 Score=21.28 Aligned_cols=33 Identities=9% Similarity=0.314 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 39 TETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 39 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
++.+++.+|..+..+....++.++++.++....
T Consensus 219 pR~eie~iF~ki~~~~kpylT~~ql~dfln~~Q 251 (1189)
T KOG1265|consen 219 PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQ 251 (1189)
T ss_pred CchhHHHHHHHhccCCCccccHHHHHHHHhhhc
Confidence 446788999999888888999999999998754
No 208
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=32.46 E-value=70 Score=15.77 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=26.9
Q ss_pred CCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 18 EDGKVTVAELGVVMRSLG-QRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 18 ~~g~i~~~~~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
.+|.++..|...+-..+. ..........+...+........++.+|...+....
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 66 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRAC 66 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 378888777554433321 223333333444444322222256777777776643
No 209
>PRK09618 flgD flagellar basal body rod modification protein; Provisional
Probab=32.31 E-value=70 Score=17.59 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=16.8
Q ss_pred CCCceeHHHHHHHHHhhccCCCC
Q psy15703 54 GNGTIEFNEFLQMMSKKMKGADG 76 (84)
Q Consensus 54 ~~~~i~~~ef~~~l~~~~~~~~~ 76 (84)
....++.++|+.++...+...+.
T Consensus 23 ~~~~l~~d~FLkLLvaQLqnQDP 45 (142)
T PRK09618 23 GNQNLGKDDFLKLLITQLQNQDP 45 (142)
T ss_pred CcccccHHHHHHHHHHHHhcCCC
Confidence 34568888899998888766543
No 210
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=32.23 E-value=86 Score=17.86 Aligned_cols=26 Identities=12% Similarity=0.526 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 42 ELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 42 ~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
++..++..+... +.++|.+|..+|..
T Consensus 5 D~~~Ll~~F~~~--~~~~F~~F~~~W~~ 30 (194)
T PF09808_consen 5 DIDELLQRFQQA--ESVRFEDFKRLWRE 30 (194)
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 344444444322 34556666655554
No 211
>PRK09389 (R)-citramalate synthase; Provisional
Probab=31.96 E-value=1.6e+02 Score=19.68 Aligned_cols=48 Identities=17% Similarity=0.383 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCC--CCCCceeHHHHHHHHHhhcc
Q psy15703 25 AELGVVMRSLGQRPTETELRDMVNEVDQ--DGNGTIEFNEFLQMMSKKMK 72 (84)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~--~~~~~i~~~ef~~~l~~~~~ 72 (84)
.-+...++.+|..++.+.+..++..+.. +....++-.++..++...+.
T Consensus 321 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~~~ 370 (488)
T PRK09389 321 AALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDVLG 370 (488)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhh
Confidence 4466677888998888888877777632 33446888888888876653
No 212
>KOG0493|consensus
Probab=31.10 E-value=1.3e+02 Score=18.55 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=27.5
Q ss_pred chHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy15703 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNE 49 (84)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 49 (84)
+|+.+|..-|.. +.||+...-..+..+++. +...+...|+.
T Consensus 256 eQL~RLK~EF~e-----nRYlTEqRRQ~La~ELgL--NEsQIKIWFQN 296 (342)
T KOG0493|consen 256 EQLQRLKAEFQE-----NRYLTEQRRQELAQELGL--NESQIKIWFQN 296 (342)
T ss_pred HHHHHHHHHHhh-----hhhHHHHHHHHHHHHhCc--CHHHhhHHhhh
Confidence 577778777754 678888777777777774 44555555543
No 213
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=30.62 E-value=77 Score=15.63 Aligned_cols=18 Identities=11% Similarity=0.462 Sum_probs=8.7
Q ss_pred HHHHhCCCCCCceeHHHH
Q psy15703 46 MVNEVDQDGNGTIEFNEF 63 (84)
Q Consensus 46 ~~~~~d~~~~~~i~~~ef 63 (84)
+...++.+.+|.|...-+
T Consensus 28 L~~~~~~~~dG~Vpl~~i 45 (82)
T cd08032 28 LREQIEKSRDGYIDISLL 45 (82)
T ss_pred HHHHhcCCCCCCEeHHHH
Confidence 334444445555555543
No 214
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=30.44 E-value=67 Score=18.64 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=18.8
Q ss_pred hhhCCCCCCcccHHHHHHHHHHc
Q psy15703 12 MLFDKDEDGKVTVAELGVVMRSL 34 (84)
Q Consensus 12 ~~~d~~~~g~i~~~~~~~~l~~~ 34 (84)
..+|.+++|.++.+++..+.+..
T Consensus 57 ~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 57 EGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HhhhhcccCCCCHHHHHHHHHHH
Confidence 35789999999999988877654
No 215
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.41 E-value=59 Score=15.19 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=12.2
Q ss_pred CCceeHHHHHHHHHhh
Q psy15703 55 NGTIEFNEFLQMMSKK 70 (84)
Q Consensus 55 ~~~i~~~ef~~~l~~~ 70 (84)
.|.|+++.|+..++.+
T Consensus 37 ~g~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRSL 52 (65)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 5779999999888765
No 216
>KOG0039|consensus
Probab=30.13 E-value=1.9e+02 Score=20.10 Aligned_cols=64 Identities=28% Similarity=0.402 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHc---C-----CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSL---G-----QRPTETELRDMVNEVDQDGNGTIEFNEFLQMMS 68 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~---~-----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 68 (84)
..+++.+|...|. .+|.++.+++..++... + .....+....++...+.+..+.+.+.++..++.
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHH
Confidence 4678888888888 78999999988877553 1 122334445566667777777777776655555
No 217
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=30.04 E-value=1.1e+02 Score=17.13 Aligned_cols=28 Identities=11% Similarity=0.072 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy15703 23 TVAELGVVMRSLGQRPTETELRDMVNEV 50 (84)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 50 (84)
+++++-..++..=..++.++.+.+++.|
T Consensus 2 ~k~efL~~L~~~L~~lp~~e~~e~l~~Y 29 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEEEREEILEYY 29 (181)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444422235555555555544
No 218
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=29.97 E-value=83 Score=15.85 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=26.7
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNE 49 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 49 (84)
+.+.++..|..+- ..|+..+++.+++.+| ++..++..+-..
T Consensus 2 ~~~~l~~~f~~i~----~~V~~~~Wk~laR~LG--Lse~~I~~i~~~ 42 (96)
T cd08315 2 PQETLRRSFDHFI----KEVPFDSWNRLMRQLG--LSENEIDVAKAN 42 (96)
T ss_pred cHhHHHHHHHHHH----HHCCHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 3456777776553 3477888899888888 455555555444
No 219
>COG1843 FlgD Flagellar hook capping protein [Cell motility and secretion]
Probab=29.93 E-value=63 Score=19.13 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=17.6
Q ss_pred CCCceeHHHHHHHHHhhccCCCC
Q psy15703 54 GNGTIEFNEFLQMMSKKMKGADG 76 (84)
Q Consensus 54 ~~~~i~~~ef~~~l~~~~~~~~~ 76 (84)
..+.+..++|+.+|...+...++
T Consensus 25 ~~~~l~kd~FLkLLiaQLknQDP 47 (222)
T COG1843 25 SNASLGKDDFLKLLIAQLKNQDP 47 (222)
T ss_pred ccccccHHHHHHHHHHHHhcCCC
Confidence 45678889999999888876544
No 220
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=29.63 E-value=26 Score=18.36 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=8.7
Q ss_pred CCCcccHHHHHHHHHHc
Q psy15703 18 EDGKVTVAELGVVMRSL 34 (84)
Q Consensus 18 ~~g~i~~~~~~~~l~~~ 34 (84)
.+|.++..|...+...+
T Consensus 36 aDG~v~~~E~~~i~~~~ 52 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLL 52 (140)
T ss_dssp TTSS--CHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 36777777766554443
No 221
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=28.87 E-value=1.4e+02 Score=18.12 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=30.7
Q ss_pred CCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy15703 17 DEDGKVTVAELGVVMRSL--GQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 17 ~~~g~i~~~~~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
..+|.++..|.. +.+.+ ...++.+.-......+........++.+|+..+....
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~ 122 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVC 122 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 457889988876 33332 1234444433333444333444577888888777644
No 222
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=28.61 E-value=1.4e+02 Score=17.99 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=34.2
Q ss_pred CCcccHHHHHHHHHHcCC------CCCHHHHHHHHHHhCCCCC-CceeHHHHHHH
Q psy15703 19 DGKVTVAELGVVMRSLGQ------RPTETELRDMVNEVDQDGN-GTIEFNEFLQM 66 (84)
Q Consensus 19 ~g~i~~~~~~~~l~~~~~------~~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~ 66 (84)
.|.+..+.+..++..++. .+.++.-..++..+..+-+ +.|++.+.+.+
T Consensus 168 ~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~L 222 (237)
T TIGR03849 168 KGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISL 222 (237)
T ss_pred CCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHH
Confidence 466777777777776543 2345556678888988888 78999887553
No 223
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=27.51 E-value=24 Score=17.34 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=15.0
Q ss_pred HhCCCCCCceeHHHHHHHHHhhc
Q psy15703 49 EVDQDGNGTIEFNEFLQMMSKKM 71 (84)
Q Consensus 49 ~~d~~~~~~i~~~ef~~~l~~~~ 71 (84)
.+..+.+...+|++|..++....
T Consensus 13 RFsl~r~~~~~f~ef~~ll~~lH 35 (80)
T cd06403 13 RFSLDRNKPGKFEDFYKLLEHLH 35 (80)
T ss_pred EEEeccccCcCHHHHHHHHHHHh
Confidence 34445555677888888777654
No 224
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=27.07 E-value=77 Score=14.50 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=8.1
Q ss_pred hhCCCCCCcccHHHHH
Q psy15703 13 LFDKDEDGKVTVAELG 28 (84)
Q Consensus 13 ~~d~~~~g~i~~~~~~ 28 (84)
.++.+++|+|+...+.
T Consensus 23 ~~~~~~~g~Vpi~~i~ 38 (61)
T PF05383_consen 23 QMDSNPDGWVPISTIL 38 (61)
T ss_dssp HHCTTTTTBEEHHHHT
T ss_pred HHHhcCCCcEeHHHHH
Confidence 3445555666654443
No 225
>PF14178 YppF: YppF-like protein
Probab=26.83 E-value=48 Score=15.37 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=13.4
Q ss_pred CCceeHHHHHHHHHhhccCC
Q psy15703 55 NGTIEFNEFLQMMSKKMKGA 74 (84)
Q Consensus 55 ~~~i~~~ef~~~l~~~~~~~ 74 (84)
.|.|+..+|-.+++.+...+
T Consensus 34 ~gei~i~eYR~lvreLE~~G 53 (60)
T PF14178_consen 34 QGEISINEYRNLVRELEANG 53 (60)
T ss_pred hCcccHHHHHHHHHHHHHhC
Confidence 36678888877777664433
No 226
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=26.61 E-value=1.2e+02 Score=20.55 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=22.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCC
Q psy15703 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPT 39 (84)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~ 39 (84)
.....|..+-+.+..-++..++..++..++....
T Consensus 486 ~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~d 519 (612)
T COG5069 486 SNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGD 519 (612)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccC
Confidence 3344566666666666888888888888765443
No 227
>PRK08181 transposase; Validated
Probab=26.22 E-value=1.6e+02 Score=17.90 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=31.7
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 19 DGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 19 ~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
.+.|+...+...++.+..+-....+....... ..+.++|.+|+..+...
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a---~~~~~~~~e~L~~ll~~ 52 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQA---DKEGWPAARFLAAIAEH 52 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHHH---hhcCCCHHHHHHHHHHH
Confidence 45667777888888877654444444443332 34568999998887654
No 228
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=26.05 E-value=44 Score=16.18 Aligned_cols=11 Identities=9% Similarity=-0.079 Sum_probs=3.2
Q ss_pred CCCceeHHHHH
Q psy15703 54 GNGTIEFNEFL 64 (84)
Q Consensus 54 ~~~~i~~~ef~ 64 (84)
..+.++..+..
T Consensus 50 ~~~~lt~~~~~ 60 (86)
T PF04433_consen 50 PNKYLTKTDAR 60 (86)
T ss_dssp TTS---HHHHH
T ss_pred CCCcccHHHHH
Confidence 33444444433
No 229
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=25.89 E-value=59 Score=12.78 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=13.1
Q ss_pred cccHHHHHHHHHHcCCCCC
Q psy15703 21 KVTVAELGVVMRSLGQRPT 39 (84)
Q Consensus 21 ~i~~~~~~~~l~~~~~~~~ 39 (84)
.++..+++..++..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4567778888887776543
No 230
>PHA02975 hypothetical protein; Provisional
Probab=25.44 E-value=90 Score=14.90 Aligned_cols=16 Identities=19% Similarity=0.677 Sum_probs=12.5
Q ss_pred eHHHHHHHHHhhccCC
Q psy15703 59 EFNEFLQMMSKKMKGA 74 (84)
Q Consensus 59 ~~~ef~~~l~~~~~~~ 74 (84)
+|++|...+...+...
T Consensus 19 DF~nFI~vVksVLtdk 34 (69)
T PHA02975 19 DFEDFIDTIMHVLTGK 34 (69)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 5888888888887654
No 231
>KOG4070|consensus
Probab=25.17 E-value=1.4e+02 Score=16.84 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=34.4
Q ss_pred CCCCCC-cccHHHHHHHHHHcC----CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy15703 15 DKDEDG-KVTVAELGVVMRSLG----QRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 15 d~~~~g-~i~~~~~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 70 (84)
|+..+| .++-..+..+++..+ ..++.-+....|..+....-+.++|++|-..|..+
T Consensus 26 d~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~el 86 (180)
T KOG4070|consen 26 DSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEEL 86 (180)
T ss_pred CccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHH
Confidence 444444 355566777777653 33444455666666655566789999996666554
No 232
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=24.87 E-value=96 Score=14.87 Aligned_cols=10 Identities=10% Similarity=0.315 Sum_probs=4.3
Q ss_pred eeHHHHHHHH
Q psy15703 58 IEFNEFLQMM 67 (84)
Q Consensus 58 i~~~ef~~~l 67 (84)
++.++...++
T Consensus 46 ~~~eeiq~LC 55 (71)
T PF04282_consen 46 MPVEEIQKLC 55 (71)
T ss_pred CCHHHHHHHh
Confidence 4444444333
No 233
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=23.73 E-value=62 Score=16.01 Aligned_cols=16 Identities=38% Similarity=0.491 Sum_probs=10.2
Q ss_pred CCcccHHHHHHHHHHc
Q psy15703 19 DGKVTVAELGVVMRSL 34 (84)
Q Consensus 19 ~g~i~~~~~~~~l~~~ 34 (84)
+|.++..+...+...+
T Consensus 16 DG~v~~~E~~~i~~~l 31 (111)
T cd07176 16 DGDIDDAELQAIEALL 31 (111)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 6777777766655544
No 234
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=23.70 E-value=1.6e+02 Score=17.65 Aligned_cols=63 Identities=3% Similarity=0.175 Sum_probs=35.6
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCC---CceeHHHHHHHHHhhc
Q psy15703 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGN---GTIEFNEFLQMMSKKM 71 (84)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~---~~i~~~ef~~~l~~~~ 71 (84)
.++++...|-.|=..+.+.++..++.+.-++. ..+..|+..|..... ..-.+...+.++....
T Consensus 144 PmKel~~kyP~wL~~n~~~l~~ed~~rY~~Q~------~~v~~I~~~fE~~~~~d~~~~~~~~i~~lmqemQ 209 (248)
T PF04614_consen 144 PMKELRDKYPEWLEENKSKLSAEDYERYEKQY------ELVKEICAIFEKPPYDDEDPERREKIMELMQEMQ 209 (248)
T ss_dssp HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHH------HHHHHHHHHHHH--TT--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHhCcCcCCHHHHHHHHHHH------HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHH
Confidence 35666666666655555688888888766653 245556666643322 2345566666666553
No 235
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=23.66 E-value=2.2e+02 Score=18.65 Aligned_cols=40 Identities=15% Similarity=0.444 Sum_probs=28.0
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHc----------------CCCCCHHHHHHHHHHhC
Q psy15703 11 FMLFDKDEDGKVTVAELGVVMRSL----------------GQRPTETELRDMVNEVD 51 (84)
Q Consensus 11 f~~~d~~~~g~i~~~~~~~~l~~~----------------~~~~~~~~~~~~~~~~d 51 (84)
|..||....+ ++++.+...|+.. |.+++.++|..++..+.
T Consensus 147 Y~Yyd~~~~~-~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~ 202 (396)
T COG1448 147 YPYYDAETKG-LDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIK 202 (396)
T ss_pred eecccccccc-ccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4567776554 8888888887754 34567788888777763
No 236
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=23.26 E-value=2.8e+02 Score=20.35 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCC
Q psy15703 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP 38 (84)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~~~~~~ 38 (84)
..+++.+++.+.+-++++-+|.-++.+...+|.++
T Consensus 713 ERRiQrlykvleP~gdsrpDW~Iiq~vA~~lG~~w 747 (978)
T COG3383 713 ERRIQRLYKVLEPLGDSRPDWEIIQEVANALGAGW 747 (978)
T ss_pred HHHHHHHHHHhccccCCCccHHHHHHHHHHhcCCC
Confidence 45777788888899999999999999888887544
No 237
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=23.12 E-value=70 Score=12.68 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=12.1
Q ss_pred cccHHHHHHHHHHcCCCCC
Q psy15703 21 KVTVAELGVVMRSLGQRPT 39 (84)
Q Consensus 21 ~i~~~~~~~~l~~~~~~~~ 39 (84)
.++..+++..++..|.+.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 3566777777777766543
No 238
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=22.92 E-value=30 Score=13.65 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=8.2
Q ss_pred HHHHhCCCCCCceeHH
Q psy15703 46 MVNEVDQDGNGTIEFN 61 (84)
Q Consensus 46 ~~~~~d~~~~~~i~~~ 61 (84)
++..-|.+++-+|+.+
T Consensus 4 LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 4 LLEQEDTDGNFQITIE 19 (30)
T ss_pred HhhccccCCCcEEEEe
Confidence 3444455555555543
No 239
>PTZ00315 2'-phosphotransferase; Provisional
Probab=22.77 E-value=2.7e+02 Score=19.34 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=27.5
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q psy15703 15 DKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVD 51 (84)
Q Consensus 15 d~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~d 51 (84)
..+..|+++.+++......-+..++.+.+..+...-+
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~nd 435 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSD 435 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCC
Confidence 3567899999999888776566677777777766543
No 240
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=22.77 E-value=1.1e+02 Score=14.85 Aligned_cols=31 Identities=10% Similarity=0.273 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCCC
Q psy15703 25 AELGVVMRSLGQRPTETELRDMVNEVDQDGN 55 (84)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 55 (84)
..+...+.++|.+.+...+..++.......+
T Consensus 6 h~l~~LF~QLGL~~~~~~I~~FI~~H~L~~~ 36 (74)
T PF10982_consen 6 HTLSNLFAQLGLDSSDEAIEAFIETHQLPAD 36 (74)
T ss_dssp THHHHHHHHHTS---HHHHHHHHHHS---TT
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHhCCCCCC
Confidence 3567778888888888888888887764443
No 241
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=22.68 E-value=1.1e+02 Score=18.03 Aligned_cols=23 Identities=9% Similarity=0.397 Sum_probs=17.4
Q ss_pred CCCCCCceeHHHHHHHHHhhccC
Q psy15703 51 DQDGNGTIEFNEFLQMMSKKMKG 73 (84)
Q Consensus 51 d~~~~~~i~~~ef~~~l~~~~~~ 73 (84)
+..++.+|||.+|.-.+...+..
T Consensus 177 n~~G~SrIS~aDYAiA~lDe~E~ 199 (211)
T COG2910 177 NAKGESRISYADYAIAVLDELEK 199 (211)
T ss_pred cCCCceeeeHHHHHHHHHHHHhc
Confidence 44566799999998888776543
No 242
>PRK07394 hypothetical protein; Provisional
Probab=22.59 E-value=2.1e+02 Score=18.09 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=17.4
Q ss_pred CcccHHHHHHHHHHc-CCCCCHHHHHHHHHHh
Q psy15703 20 GKVTVAELGVVMRSL-GQRPTETELRDMVNEV 50 (84)
Q Consensus 20 g~i~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 50 (84)
..++.++-..++..+ ....+...+-.++..+
T Consensus 20 ~~Lt~eea~~~~~~il~g~~~~~q~aAfL~al 51 (342)
T PRK07394 20 KDLTREEAADALKLMLLGEATPAQIGAFLIAH 51 (342)
T ss_pred CCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 457777777777664 2334444444444444
No 243
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=22.51 E-value=1.8e+02 Score=17.16 Aligned_cols=35 Identities=3% Similarity=0.202 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCCCCce-eHHHHHHHHHhhccCCC
Q psy15703 41 TELRDMVNEVDQDGNGTI-EFNEFLQMMSKKMKGAD 75 (84)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i-~~~ef~~~l~~~~~~~~ 75 (84)
..+...+...-.+.+..+ ++.-.+.++...+....
T Consensus 84 ~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl~~~s 119 (205)
T PF12238_consen 84 EKMTKYYKKHIYKEDSEVKDYNGLVKFCKDFLDSES 119 (205)
T ss_pred HHHHHHHHHhccCcccccccHHHHHHHHHHHhcccc
Confidence 345566666667777888 89988888888776554
No 244
>PHA02692 hypothetical protein; Provisional
Probab=22.10 E-value=1.1e+02 Score=14.65 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=14.6
Q ss_pred HHHHhCCCCCCceeHHHHHHHHHhhccC
Q psy15703 46 MVNEVDQDGNGTIEFNEFLQMMSKKMKG 73 (84)
Q Consensus 46 ~~~~~d~~~~~~i~~~ef~~~l~~~~~~ 73 (84)
++..+-.+.+. +|++|...+...+..
T Consensus 8 ifGVFmss~Dd--DF~~Fi~vVksVLtD 33 (70)
T PHA02692 8 VFGSFLSNSDE--DFEEFLNIVRTVMTE 33 (70)
T ss_pred HHHhhcCCCHH--HHHHHHHHHHHHHcC
Confidence 44444334333 677777777766654
No 245
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.99 E-value=1.8e+02 Score=16.90 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=23.6
Q ss_pred HHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy15703 31 MRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69 (84)
Q Consensus 31 l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 69 (84)
+.........+....+...+..|..|.|+....+.+..-
T Consensus 109 l~~w~~g~~~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl 147 (195)
T PF11363_consen 109 LNEWAKGADPELRALVNRAFQVDKEGNLNTSRILGLRRL 147 (195)
T ss_pred HHHHhcCCChHHHHHHHHHHhcCCCCCcCHHHHHHHHhc
Confidence 333333333333334455567788899998888777664
No 246
>PF04077 DsrH: DsrH like protein; InterPro: IPR007215 The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulphur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulphide moiety, delivered by the cysteine desulphurase IscS to TusA, then to TusBCD. The activated sulphur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulphur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulphur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulphur flux, such as oxidation from sulphide to molecular sulphur to sulphate [].; GO: 0002143 tRNA wobble position uridine thiolation, 0005737 cytoplasm; PDB: 2HYB_O 2HY5_C 1X9A_A 1RHX_A 2D1P_C.
Probab=21.68 E-value=90 Score=15.32 Aligned_cols=15 Identities=13% Similarity=0.574 Sum_probs=11.2
Q ss_pred CceeHHHHHHHHHhh
Q psy15703 56 GTIEFNEFLQMMSKK 70 (84)
Q Consensus 56 ~~i~~~ef~~~l~~~ 70 (84)
..|+|.+|+.+....
T Consensus 70 ~~Idy~~fV~Lt~~~ 84 (88)
T PF04077_consen 70 KLIDYDGFVELTEQH 84 (88)
T ss_dssp EEE-HHHHHHHHHHS
T ss_pred eEeCHHHHHHHHHHc
Confidence 469999999987754
No 247
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=21.39 E-value=1.9e+02 Score=17.12 Aligned_cols=34 Identities=29% Similarity=0.292 Sum_probs=26.1
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy15703 16 KDEDGKVTVAELGVVMRSLGQRPTETELRDMVNE 49 (84)
Q Consensus 16 ~~~~g~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 49 (84)
.+.+|+.+.+++...++..+..++.+.+..+...
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~ 87 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVAT 87 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhc
Confidence 5778999999999999887777777765555443
No 248
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=21.05 E-value=99 Score=16.28 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=13.6
Q ss_pred CCCCcccHHHHHHHHHHc
Q psy15703 17 DEDGKVTVAELGVVMRSL 34 (84)
Q Consensus 17 ~~~g~i~~~~~~~~l~~~ 34 (84)
|.+|.++.+++..++.++
T Consensus 6 DtSGSis~~~l~~fl~ev 23 (126)
T PF09967_consen 6 DTSGSISDEELRRFLSEV 23 (126)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 457899988888877653
No 249
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.97 E-value=79 Score=17.97 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=15.1
Q ss_pred hCCCCC------CcccHHHHHHHHHHc
Q psy15703 14 FDKDED------GKVTVAELGVVMRSL 34 (84)
Q Consensus 14 ~d~~~~------g~i~~~~~~~~l~~~ 34 (84)
+|.++. |++++++|..+++=+
T Consensus 122 fdk~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 122 FDKTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred EcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 466654 888888888877654
No 250
>PRK13510 sulfur transfer complex subunit TusB; Provisional
Probab=20.83 E-value=1.1e+02 Score=15.28 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=13.4
Q ss_pred CCCceeHHHHHHHHHhh
Q psy15703 54 GNGTIEFNEFLQMMSKK 70 (84)
Q Consensus 54 ~~~~i~~~ef~~~l~~~ 70 (84)
+-..|+|.+|+.+....
T Consensus 73 ~i~~IdY~~FV~Lt~~h 89 (95)
T PRK13510 73 SIILISYTDFVRLTVKH 89 (95)
T ss_pred CceEECHHHHHHHHHhc
Confidence 34579999999988764
No 251
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=20.47 E-value=1e+02 Score=18.32 Aligned_cols=20 Identities=30% Similarity=0.692 Sum_probs=15.9
Q ss_pred ceeHHHHHHHHHhhccCCCC
Q psy15703 57 TIEFNEFLQMMSKKMKGADG 76 (84)
Q Consensus 57 ~i~~~ef~~~l~~~~~~~~~ 76 (84)
..++++|+++|...+.+.++
T Consensus 29 ~~~~d~FLkLL~aQLqNQDP 48 (223)
T PRK12813 29 TSDFETFLRMLTTQLQNQDP 48 (223)
T ss_pred ccCHHHHHHHHHHHHhcCCC
Confidence 35788999999999877654
No 252
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=20.40 E-value=95 Score=13.17 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHcCCCCCHHH
Q psy15703 23 TVAELGVVMRSLGQRPTETE 42 (84)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~ 42 (84)
+..++..+.+..|+..+..+
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~e 47 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEE 47 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHH
Confidence 45566666666666665544
No 253
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=20.25 E-value=1.5e+02 Score=15.41 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=7.3
Q ss_pred CCHHHHHHHHHHh
Q psy15703 38 PTETELRDMVNEV 50 (84)
Q Consensus 38 ~~~~~~~~~~~~~ 50 (84)
-+.++++.++...
T Consensus 79 ~~~dElrai~~~~ 91 (112)
T PRK14981 79 ETRDELRAIFAKE 91 (112)
T ss_pred CCHHHHHHHHHHh
Confidence 3455666666554
Done!