RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15703
(84 letters)
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 111 bits (280), Expect = 2e-33
Identities = 55/81 (67%), Positives = 66/81 (81%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
+ +FKEAF LFDKD DG +T ELG VMRSLGQ PTE EL+DM+NEVD DGNGTI+F EF
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 64 LQMMSKKMKGADGEDELKEAF 84
L +M++KMK D E+E+KEAF
Sbjct: 70 LTLMARKMKDTDSEEEIKEAF 90
Score = 58.6 bits (142), Expect = 1e-12
Identities = 29/66 (43%), Positives = 47/66 (71%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
++ KEAF +FD+D +G ++ AEL VM +LG++ T+ E+ +M+ E D DG+G I + EF+
Sbjct: 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143
Query: 65 QMMSKK 70
+MM K
Sbjct: 144 KMMMSK 149
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 77.3 bits (191), Expect = 8e-20
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEF 60
+ + + KEAF LFD+D DG + ELG ++RSLG P+E E+ + E+D GN T++F
Sbjct: 16 EEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEID-AGNETVDF 74
Query: 61 NEFLQMMSKKMKGADGEDELKEAF 84
EFL +MS K+K D E+EL+EAF
Sbjct: 75 PEFLTVMSVKLKRGDKEEELREAF 98
Score = 58.5 bits (142), Expect = 2e-12
Identities = 26/66 (39%), Positives = 47/66 (71%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
++ +EAF LFDKD DG +++ EL V++SLG+R ++ E+ ++ E D+DG+G I++ EF
Sbjct: 92 EELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFK 151
Query: 65 QMMSKK 70
+++
Sbjct: 152 KLIKDS 157
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse
superfamily of calcium sensors and calcium signal
modulators; most examples in this alignment model have
2 active canonical EF hands. Ca2+ binding induces a
conformational change in the EF-hand motif, leading to
the activation or inactivation of target proteins.
EF-hands tend to occur in pairs or higher copy numbers.
Length = 63
Score = 65.6 bits (161), Expect = 3e-16
Identities = 30/63 (47%), Positives = 47/63 (74%)
Query: 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQ 65
+ +EAF LFDKD DG ++ EL ++SLG+ +E E+ +M+ EVD+DG+G I+F EFL+
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Query: 66 MMS 68
+M+
Sbjct: 61 LMA 63
Score = 30.6 bits (70), Expect = 0.015
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 42 ELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
ELR+ D+DG+GTI +E + K + E+E+ E
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAAL-KSLGEGLSEEEIDEMI 42
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 65.1 bits (159), Expect = 4e-15
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ +EAF LFD D G + EL V MRSLG P + E++ M+ +VD+DG+G I+F EFL
Sbjct: 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFL 76
Query: 65 QMMSKKMKGADGEDELKEAF 84
+M+KK+ D +E+ +AF
Sbjct: 77 DIMTKKLGERDPREEILKAF 96
Score = 53.2 bits (128), Expect = 2e-10
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 10 AFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
AF LFD D+ GK+++ L V + LG+ T+ EL++M++E D++G+G I EF ++M K
Sbjct: 95 AFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154
Query: 70 K 70
Sbjct: 155 T 155
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 48.1 bits (115), Expect = 2e-09
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 13 LFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMV----NEVDQDGNGTIEFNEFLQMM 67
L DKD DG + V EL ++++LG + T+ E+ +++ NE+D+DG+G I F EFL+ M
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 44.4 bits (106), Expect = 5e-08
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 18 EDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
E G +T EL + LG +E E+ + E D DG+G I F EF ++
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFCVLL 50
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 35.3 bits (82), Expect = 1e-04
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSLG 35
+ +EAF LFDKD DG ++ EL +RSLG
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
Score = 26.0 bits (58), Expect = 0.50
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 42 ELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
ELR+ D+DG+G I E + +
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRS 28
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not
undergo calcium dependent conformational changes.
Length = 29
Score = 34.3 bits (80), Expect = 3e-04
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 42 ELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
EL++ E D+DG+G I F EF +++ K
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKK 28
Score = 30.9 bits (71), Expect = 0.006
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSL 34
+ KEAF FDKD DGK++ E +++ L
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 32.4 bits (75), Expect = 0.001
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 42 ELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70
EL++ D+DG+G I+F EF ++
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 32.4 bits (75), Expect = 0.002
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 6 KFKEAFMLFDKDEDGKVTVAELGVVMRSL 34
+ KEAF LFDKD DGK+ E ++++L
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
>gnl|CDD|197477 smart00027, EH, Eps15 homology domain. Pair of EF hand motifs
that recognise proteins containing Asn-Pro-Phe (NPF)
sequences.
Length = 96
Score = 31.5 bits (72), Expect = 0.013
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
K+++ F DK++DG VT A+ ++ G T L + N D D +G ++ +EF
Sbjct: 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTL--LAKIWNLADIDNDGELDKDEF 66
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 31.8 bits (72), Expect = 0.024
Identities = 11/56 (19%), Positives = 30/56 (53%)
Query: 15 DKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70
D DEDG+++ +E ++++ G + ++ D +G+G + +E +++ +
Sbjct: 189 DYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244
Score = 25.2 bits (55), Expect = 4.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVM 31
+K +E F D + DG VT+ EL ++
Sbjct: 215 NKKEELFKAADLNGDGVVTIDELAALL 241
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated
in endocytosis, vesicle transport, and signal
transduction. The alignment contains a pair of EF-hand
motifs, typically one of them is canonical and binds to
Ca2+, while the other may not bind to Ca2+. A
hydrophobic binding pocket is formed by residues from
both EF-hand motifs. The EH domain binds to proteins
containing NPF (class I), [WF]W or SWG (class II), or
H[TS]F (class III) sequence motifs.
Length = 67
Score = 30.3 bits (69), Expect = 0.028
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
+ + F D D DG ++ E + G + L + + D D +G ++ EF
Sbjct: 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEF 55
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 28.0 bits (64), Expect = 0.075
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVM 31
K+ F FD + DGK++ EL ++
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
Score = 25.7 bits (58), Expect = 0.71
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 43 LRDMVNEVDQDGNGTIEFNEFLQMM 67
L+D+ + D +G+G I E +++
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|223978 COG1049, AcnB, Aconitase B [Energy production and conversion].
Length = 852
Score = 29.3 bits (66), Expect = 0.16
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 25 AELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKG 73
AEL V LG+ PT E V ++D+ + + F Q+ + K
Sbjct: 799 AELAAVCAILGKIPTVEEYMAYVAKIDKQADDIYRYLNFNQIENYTEKA 847
>gnl|CDD|215053 PLN00094, PLN00094, aconitate hydratase 2; Provisional.
Length = 938
Score = 28.7 bits (64), Expect = 0.26
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 25 AELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM--MSKKMKGADGEDELKE 82
AEL V LG+ PT E + ++D + T + F ++ + + + +E++E
Sbjct: 871 AELAAVAAILGRLPTVEEYLSYMEKLDATASDTYRYLNFDELPEYVESAEKVEISEEMRE 930
Query: 83 A 83
A
Sbjct: 931 A 931
>gnl|CDD|180387 PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed.
Length = 434
Score = 27.4 bits (61), Expect = 0.75
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 18 EDGKVTVAELGVVMRSL-GQRPTETELRDMVNEVDQDGNGTIEFNEFLQ 65
+D V LG M L G+ T E R+ + EV +G +F EFL
Sbjct: 266 KDLTELVLTLGSQMVVLAGKAKTLEEAREHLIEVMNNGKALEKFKEFLS 314
>gnl|CDD|225762 COG3221, PhnD, ABC-type phosphate/phosphonate transport system,
periplasmic component [Inorganic ion transport and
metabolism].
Length = 299
Score = 26.9 bits (60), Expect = 1.0
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELG----VVMRSLGQRPTETELRDMVNEVDQDGN 55
+K ++AF+ K ED K+ + G V +R +P +RD V E+ G
Sbjct: 249 EKLRDAFLDLAKTEDKKILLDLYGLGGFVEVRDDDYKP----IRDAVKELGIGGG 299
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100
hierarchy contains only S-100 EF-hand domains, other
EF-hands have been modeled separately. S100 proteins
are expressed exclusively in vertebrates, and are
implicated in intracellular and extracellular
regulatory activities. Intracellularly, S100 proteins
act as Ca-signaling or Ca-buffering proteins. The most
unusual characteristic of certain S100 proteins is
their occurrence in extracellular space, where they act
in a cytokine-like manner through RAGE, the receptor
for advanced glycation products. Structural data
suggest that many S100 members exist within cells as
homo- or heterodimers and even oligomers;
oligomerization contributes to their functional
diversification. Upon binding calcium, most S100
proteins change conformation to a more open structure
exposing a hydrophobic cleft. This hydrophobic surface
represents the interaction site of S100 proteins with
their target proteins. There is experimental evidence
showing that many S100 proteins have multiple binding
partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such
as S100A1,-3,-4,-6,-7,-10,-11,and -13), this group
includes the ''fused'' gene family, a group of calcium
binding S100-related proteins. The ''fused'' gene
family includes multifunctional epidermal
differentiation proteins - profilaggrin, trichohyalin,
repetin, hornerin, and cornulin; functionally these
proteins are associated with keratin intermediate
filaments and partially crosslinked to the cell
envelope. These ''fused'' gene proteins contain
N-terminal sequence with two Ca-binding EF-hands motif,
which may be associated with calcium signaling in
epidermal cells and autoprocessing in a
calcium-dependent manner. In contrast to S100 proteins,
"fused" gene family proteins contain an extraordinary
high number of almost perfect peptide repeats with
regular array of polar and charged residues similar to
many known cell envelope proteins.
Length = 88
Score = 26.3 bits (59), Expect = 1.2
Identities = 9/44 (20%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 26 ELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
EL +++ + ++ ++D + +G ++F EFL ++ K
Sbjct: 39 ELPNFLKNQKDPEA---VDKIMKDLDVNKDGKVDFQEFLVLIGK 79
>gnl|CDD|183997 PRK13358, PRK13358, protocatechuate 4,5-dioxygenase subunit beta;
Provisional.
Length = 269
Score = 26.6 bits (59), Expect = 1.2
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 42 ELRDMVNE--VDQDGNGTIEFNEFLQMMSKKMKGADGE 77
L + NE ++Q GNG +E ++ + + G GE
Sbjct: 212 ALVALGNEEILEQGGNGGLEIRNWIMAAA-AVPGRRGE 248
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 26.2 bits (58), Expect = 2.4
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 24 VAELGVVMRSLGQRPTETELRDMVNEVDQDG 54
VAELG + T L + +
Sbjct: 343 VAELGAGPALDPRELTAERLAAALRRLLDPP 373
>gnl|CDD|225355 COG2761, FrnE, Predicted dithiol-disulfide isomerase involved in
polyketide biosynthesis [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 225
Score = 25.8 bits (57), Expect = 2.5
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 43 LRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
L + E Q+ I + F +G D ++ L + +
Sbjct: 26 LEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKY 67
>gnl|CDD|187860 cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; subunit
of the Cascade complex; signature gene for I-E subtype;
also known as Cse1/CasA/YgcL family.
Length = 465
Score = 25.8 bits (57), Expect = 2.8
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 2 KYLDKFKEAFMLFDKD 17
YL+K+++ F LF
Sbjct: 82 AYLEKWRDRFDLFGPG 97
>gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2. Aconitate hydratase
(aconitase) is an enzyme of the TCA cycle. This model
describes aconitase 2, AcnB, which has weak similarity
to aconitase 1. It is found almost exclusively in the
Proteobacteria [Energy metabolism, TCA cycle].
Length = 844
Score = 25.6 bits (56), Expect = 3.2
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 25 AELGVVMRSLGQRPTETELRDMVNEVDQDGNGTI----EFNE 62
AEL V LG+ PT E + V+E D+ FN+
Sbjct: 797 AELAAVCALLGKIPTPEEYQTYVSEKDKTAVDKTYRYLNFNQ 838
>gnl|CDD|220258 pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1
(CRISPR_cse1). Clusters of short DNA repeats with
non-homologous spacers, which are found at regular
intervals in the genomes of phylogenetically distinct
prokaryotic species, comprise a family with
recognisable features. This family is known as CRISPR
(short for Clustered, Regularly Interspaced Short
Palindromic Repeats). A number of protein families
appear only in association with these repeats and are
designated Cas (CRISPR-Associated) proteins. This
entry, represented by CT1972 from Chlorobaculum
tepidum, is found in the CRISPR/Cas subtype Ecoli
regions of many bacteria (most of which are
mesophiles), and not in Archaea. It is designated Cse1.
Length = 475
Score = 25.8 bits (57), Expect = 3.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 2 KYLDKFKEAFMLFDKD 17
YL+K+++ F LF
Sbjct: 81 AYLEKWRDRFDLFGPG 96
>gnl|CDD|220542 pfam10054, DUF2291, Predicted periplasmic lipoprotein (DUF2291).
Members of this family of hypothetical bacterial
proteins have no known function.
Length = 206
Score = 25.0 bits (55), Expect = 5.4
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 16/59 (27%)
Query: 6 KFKEAFMLFDKDEDGKVTV-AELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
K + + D DGK V + G +R T +RD G I+F +F
Sbjct: 104 KSRAGTIDVKVDGDGKADVRVQTGPAIRG-------TAIRD--------ATGFIKFGDF 147
>gnl|CDD|219965 pfam08676, MutL_C, MutL C terminal dimerisation domain. MutL and
MutS are key components of the DNA repair machinery that
corrects replication errors. MutS recognises mispaired
or unpaired bases in a DNA duplex and in the presence of
ATP, recruits MutL to form a DNA signaling complex for
repair. The N terminal region of MutL contains the
ATPase domain and the C terminal is involved in
dimerisation.
Length = 144
Score = 24.5 bits (54), Expect = 5.9
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 34 LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70
L Q+ E +R++++E+ + G E L M+
Sbjct: 99 LRQQNLEELIRELLDELAEKGESEELLEELLATMACH 135
>gnl|CDD|218721 pfam05731, TROVE, TROVE domain. This presumed domain is found in
TEP1 and Ro60 proteins, that are RNA-binding components
of Telomerase, Ro and Vault RNPs. This domain has been
named TROVE, (after Telomerase, Ro and Vault). This
domain is probably RNA-binding.
Length = 351
Score = 24.4 bits (53), Expect = 8.1
Identities = 12/51 (23%), Positives = 16/51 (31%)
Query: 23 TVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKG 73
+ L V ++ T R EV + EF EF Q K
Sbjct: 76 LLLALAVCAKACSDITTRPAARRYFPEVVRLPTDLFEFVEFYQSEGDATKL 126
>gnl|CDD|218304 pfam04876, Tenui_NCP, Tenuivirus major non-capsid protein. This
protein of unknown function accumulates in large amounts
in tenuivirus infected cells. It is found in all forms
of the inclusion bodies that are formed after infection.
Length = 175
Score = 24.5 bits (53), Expect = 8.7
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 43 LRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELK 81
L ++ D N I+ F ++ K+ ++ LK
Sbjct: 85 LEHLLGGEDSTTNSLIDIGVFFVILQPKLGDWITKNYLK 123
>gnl|CDD|130916 TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine
synthase, clade II. This model represents a
single-molecule form of
phosphoribosylformylglycinamidine synthase, also called
FGAM synthase, an enzyme of purine de novo biosynthesis.
This model represents a second clade of these enzymes
found in Clostridia, Bifidobacteria and Streptococcus
species. This enzyme performs the fourth step in IMP
biosynthesis (the precursor of all purines) from PRPP
[Purines, pyrimidines, nucleosides, and nucleotides,
Purine ribonucleotide biosynthesis].
Length = 1239
Score = 24.4 bits (53), Expect = 8.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 13/46 (28%)
Query: 11 FMLFDKDEDGKVTVAELGVVM------------RSLGQRPTETELR 44
F +D ED AE G+ M +S+G+ PTETE++
Sbjct: 168 FESYD-AEDLAKFKAEQGLAMSLEDLKFIQDYFKSIGRNPTETEIK 212
>gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 527
Score = 24.3 bits (53), Expect = 9.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 35 GQRPTETELRDMVNEVDQD 53
G E+E+R M+ +DQD
Sbjct: 229 GGTVNESEVRAMLGAIDQD 247
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.364
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,382,690
Number of extensions: 350366
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 69
Length of query: 84
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 32
Effective length of database: 8,631,194
Effective search space: 276198208
Effective search space used: 276198208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.2 bits)