RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15703
(84 letters)
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 116 bits (293), Expect = 1e-35
Identities = 45/78 (57%), Positives = 58/78 (74%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
FKEAF LFDKD G ++ +EL VMRSLG P+E E+ D++NE+D DGN IEF+EFL +
Sbjct: 13 FKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLAL 72
Query: 67 MSKKMKGADGEDELKEAF 84
MS+++K D E EL EAF
Sbjct: 73 MSRQLKCNDSEQELLEAF 90
Score = 73.7 bits (182), Expect = 1e-18
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ EAF +FDK+ DG ++ AEL V+ S+G++ T+ E+ +M+ EV DG+G I +F
Sbjct: 84 QELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFA 142
Query: 65 QMMSK 69
++SK
Sbjct: 143 ALLSK 147
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 116 bits (293), Expect = 2e-35
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
FKEAF LFD + G +T L V++ G R +M NE D GNG I+F EFL M
Sbjct: 8 FKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSM 67
Query: 67 MSKKMKGADGEDELKEAF 84
M ++MK ED L++AF
Sbjct: 68 MGRRMKQTTSEDILRQAF 85
Score = 67.1 bits (165), Expect = 3e-16
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
D ++AF FD + G + A L + +LG R E + + + + G I ++ F+
Sbjct: 79 DILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITETE-KGQIRYDNFI 137
Query: 65 QMM 67
M
Sbjct: 138 NTM 140
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 116 bits (294), Expect = 2e-35
Identities = 37/78 (47%), Positives = 53/78 (67%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
+EAF LFD D G + EL V MR+LG P + E++ M++E+D+DG+GTI+F EFL M
Sbjct: 30 IREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTM 89
Query: 67 MSKKMKGADGEDELKEAF 84
M+ KM D +E+ +AF
Sbjct: 90 MTAKMGERDSREEILKAF 107
Score = 79.5 bits (197), Expect = 8e-21
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
+AF LFD D G +T+ +L V + LG+ TE EL++M+ E D++ + I+ +EF+++M
Sbjct: 104 LKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIM 163
Query: 68 SKK 70
K
Sbjct: 164 KKT 166
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A
2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B*
2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 116 bits (292), Expect = 2e-35
Identities = 55/78 (70%), Positives = 63/78 (80%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
FKEAF LFDKD DG +T ELG VMRSLGQ PTE EL+DM+NEVD DGNGTI+F EFL +
Sbjct: 12 FKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSL 71
Query: 67 MSKKMKGADGEDELKEAF 84
M++KMK D E+EL EAF
Sbjct: 72 MARKMKEQDSEEELIEAF 89
Score = 78.7 bits (195), Expect = 1e-20
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
EAF +FD+D +G ++ AEL VM +LG++ T+ E+ +M+ E D DG+G I + EF++M
Sbjct: 85 LIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRM 144
Query: 67 MSKK 70
M K
Sbjct: 145 MVSK 148
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 116 bits (292), Expect = 6e-35
Identities = 55/78 (70%), Positives = 64/78 (82%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
FKEAF LFDKD DG +T ELG VMRSLGQ PTE EL+DM+NEVD DGNGTI+F EFL M
Sbjct: 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTM 72
Query: 67 MSKKMKGADGEDELKEAF 84
M++KMK D E+E++EAF
Sbjct: 73 MARKMKDTDSEEEIREAF 90
Score = 91.0 bits (227), Expect = 4e-25
Identities = 30/83 (36%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
++ +EAF +FDKD +G ++ AEL VM +LG++ T+ E+ +M+ E D DG+G + + EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 65 QMMSKKMKGAD---GEDELKEAF 84
QMM+ K G ++ ++
Sbjct: 144 QMMTAKGGGGGAAARKEVIRNKI 166
Score = 27.5 bits (62), Expect = 0.40
Identities = 1/20 (5%), Positives = 4/20 (20%)
Query: 5 DKFKEAFMLFDKDEDGKVTV 24
+ + K +
Sbjct: 160 EVIRNKIRAIGKMARVFSVL 179
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 114 bits (288), Expect = 8e-35
Identities = 33/78 (42%), Positives = 53/78 (67%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
+EAF LFD D G + V EL V MR+LG P + E++ M++E+D++G G + F +FL +
Sbjct: 8 IREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTV 67
Query: 67 MSKKMKGADGEDELKEAF 84
M++KM D ++E+ +AF
Sbjct: 68 MTQKMSEKDTKEEILKAF 85
Score = 77.5 bits (192), Expect = 2e-20
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
+AF LFD DE GK++ L V + LG+ T+ EL++M++E D+DG+G + EFL++M
Sbjct: 82 LKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 141
Query: 68 SK 69
K
Sbjct: 142 KK 143
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 113 bits (285), Expect = 4e-34
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
EAF LFD + DG + EL V M++LG + E+ D+++E D +G +++++F +
Sbjct: 25 IYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIV 84
Query: 67 MSKKMKGADGEDELKEAF 84
M +K+ D DE+K AF
Sbjct: 85 MGEKILKRDPLDEIKRAF 102
Score = 77.2 bits (191), Expect = 7e-20
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
K AF LFD D GK+++ L V + LG+ T+ ELR M+ E D DG+G I NEF+ +
Sbjct: 99 KRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAIC 158
Query: 68 SK 69
+
Sbjct: 159 TD 160
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 110 bits (277), Expect = 5e-33
Identities = 41/81 (50%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
FK AF +FD D G ++ ELG VMR LGQ PT+ EL ++ EVD+DG+GTI+F EFL M
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVM 81
Query: 67 MSKKMK---GADGEDELKEAF 84
M ++MK E+EL F
Sbjct: 82 MVRQMKEDAKGKSEEELANCF 102
Score = 76.1 bits (188), Expect = 1e-19
Identities = 23/60 (38%), Positives = 42/60 (70%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
F +FDK+ DG + + ELG ++R+ G+ TE ++ D++ + D++ +G I+F+EFL+MM
Sbjct: 99 ANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 115 bits (290), Expect = 1e-32
Identities = 55/78 (70%), Positives = 64/78 (82%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
FKEAF LFDKD DG +T ELG VMRSLGQ PTE EL+DM+NEVD DGNGTI+F EFL M
Sbjct: 314 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTM 373
Query: 67 MSKKMKGADGEDELKEAF 84
M++KMK D E+E++EAF
Sbjct: 374 MARKMKDTDSEEEIREAF 391
Score = 83.4 bits (206), Expect = 8e-21
Identities = 29/64 (45%), Positives = 46/64 (71%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
+EAF +FDKD +G ++ AEL VM +LG++ T+ E+ +M+ E D DG+G + + EF+QM
Sbjct: 387 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 446
Query: 67 MSKK 70
M+ K
Sbjct: 447 MTAK 450
Score = 56.8 bits (137), Expect = 2e-11
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 14/82 (17%)
Query: 14 FDKDEDGKVTVAELGVVMRSLGQRPTETEL----RDMVNEVDQDGNGTIEFNEFLQMMSK 69
F K + + E + + G T E+ +VN ++ G I+F E ++
Sbjct: 240 FFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKG---IDFKEDGNILGH 296
Query: 70 KMKGADGE-------DELKEAF 84
K++ + E KEAF
Sbjct: 297 KLEYNTRDQLTEEQIAEFKEAF 318
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 108 bits (271), Expect = 4e-32
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
+EAF FDKD+DG + +LG MR++G PTE EL ++ +++ + G ++F++F+++
Sbjct: 13 LREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVEL 72
Query: 67 MSKKMK----GADGEDELKEAF 84
M K+ G EL++AF
Sbjct: 73 MGPKLLAETADMIGVKELRDAF 94
Score = 73.7 bits (182), Expect = 1e-18
Identities = 22/63 (34%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRS-LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
++AF FD + DG+++ +EL MR+ LG + ++ +++ +VD +G+G ++F EF++M
Sbjct: 91 RDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRM 150
Query: 67 MSK 69
MS+
Sbjct: 151 MSR 153
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 104 bits (261), Expect = 1e-30
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQD--GNGTIEFN 61
D FKEAF+LFD+ D K+T +++G + R+LGQ PT E+ ++ ++ I F
Sbjct: 7 ADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFE 66
Query: 62 EFLQMMSKKMKGAD--GEDELKEAF 84
EFL M+ D ++ E
Sbjct: 67 EFLPMLQAAANNKDQGTFEDFVEGL 91
Score = 68.3 bits (168), Expect = 1e-16
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ F E +FDK+ +G V AEL V+ +LG++ TE E+ +++ + D NG I + F+
Sbjct: 85 EDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQE-DSNGCINYEAFV 143
Query: 65 QMM 67
+ +
Sbjct: 144 KHI 146
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 104 bits (261), Expect = 2e-30
Identities = 40/82 (48%), Positives = 55/82 (67%), Gaps = 4/82 (4%)
Query: 7 FKEAFMLFDKDE-DGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQ 65
FK AF +F DG ++ ELG VMR LGQ PT EL++M++EVD+DG+GT++F+EFL
Sbjct: 20 FKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLV 79
Query: 66 MMSKKMKGAD---GEDELKEAF 84
MM + MK E+EL + F
Sbjct: 80 MMVRSMKDDSKGKSEEELSDLF 101
Score = 74.9 bits (185), Expect = 4e-19
Identities = 18/60 (30%), Positives = 42/60 (70%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
+ F +FDK+ DG + + EL +++++ G+ TE ++ +++ + D++ +G I+++EFL+ M
Sbjct: 98 SDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 104 bits (262), Expect = 2e-30
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
KE F + D D G +T EL ++ +G E+E++D+++ D D +GTI++ EF+
Sbjct: 12 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 71
Query: 67 MSKKMKGADGEDELKEAF 84
K + E+ L AF
Sbjct: 72 TVHLNK-LEREENLVSAF 88
Score = 78.0 bits (193), Expect = 6e-20
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ AF FDKD G +T+ E+ + G + + DM+ E+DQD +G I++ EF
Sbjct: 82 ENLVSAFSYFDKDGSGYITLDEIQQACKDFGL--DDIHIDDMIKEIDQDNDGQIDYGEFA 139
Query: 65 QMMSKKMKGADGEDE-------LKEAF 84
MM K+ L++A
Sbjct: 140 AMMRKRKGNGGIGRRTMRKTLNLRDAL 166
Score = 24.5 bits (54), Expect = 4.3
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAEL 27
M+ ++A L D + +
Sbjct: 156 MRKTLNLRDALGLVDNGSNQVIEGYFK 182
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 101 bits (253), Expect = 3e-30
Identities = 37/66 (56%), Positives = 48/66 (72%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
FK AF +FD D G ++ ELG VMR LGQ PT+ EL ++ EVD+DG+GTI+F EFL M
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVM 81
Query: 67 MSKKMK 72
M ++MK
Sbjct: 82 MVRQMK 87
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle;
rigor-like, squid, contractIle protein; 2.60A
{Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B*
3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 102 bits (257), Expect = 5e-30
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
KEAF + D+D DG + + +L + SLG+ P + EL M+ E G + F FL +
Sbjct: 18 LKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP----GQLNFTAFLTL 73
Query: 67 MSKKMKGADGEDELKEAF 84
+K+ G D ED L+ AF
Sbjct: 74 FGEKVSGTDPEDALRNAF 91
Score = 68.3 bits (168), Expect = 2e-16
Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
D + AF +FD+D G + L ++ ++G ++ E++++ + N +N+ +
Sbjct: 85 DALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMV 143
Query: 65 QMMSKKMK 72
+ K
Sbjct: 144 DIKGKAED 151
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 102 bits (256), Expect = 5e-30
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
+ F D + DG V+ E+ + E L+ + +D DGNG I+ NEF +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 68 SKKMK--GADGEDELKEAF 84
+D + LK +
Sbjct: 63 GSIQGQDLSDDKIGLKVLY 81
Score = 67.6 bits (166), Expect = 2e-16
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
K + L D D DGK+T E+ + G ++ + V + D +G+G I EFL
Sbjct: 75 IGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKADANGDGYITLEEFL 130
Query: 65 QMM 67
+
Sbjct: 131 EFS 133
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 102 bits (256), Expect = 5e-30
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
FKEAF + D++ DG + +L ++ S+G+ PT+ L M++E G I F FL M
Sbjct: 9 FKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE----APGPINFTMFLTM 64
Query: 67 MSKKMKGADGEDELKEAF 84
+K+ G D ED ++ AF
Sbjct: 65 FGEKLNGTDPEDVIRNAF 82
Score = 72.9 bits (180), Expect = 2e-18
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
D + AF FD++ G + L ++ ++G R T+ E+ +M E D G + EF
Sbjct: 76 DVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFT 135
Query: 65 QMMSKKMK 72
+++ K
Sbjct: 136 RILKHGAK 143
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 103 bits (260), Expect = 5e-30
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
FKEAF L D+D+DG ++ ++ SLG+ TE EL MV E G I F FL +
Sbjct: 59 FKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAE----APGPINFTMFLTI 114
Query: 67 MSKKMKGADGEDELKEAF 84
++ G D ED + AF
Sbjct: 115 FGDRIAGTDEEDVIVNAF 132
Score = 71.6 bits (176), Expect = 2e-17
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
D AF LFD + DGK L + + G++ ++ E+ ++E DGNG I+ +F
Sbjct: 126 DVIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFA 184
Query: 65 QMMSKKMK 72
Q+++K K
Sbjct: 185 QILTKGAK 192
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 102 bits (258), Expect = 6e-30
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
KE F + D D+ G++T EL ++ +G E+E+ D++ D D +GTI++ EF+
Sbjct: 29 LKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAA 88
Query: 67 MSKKMKGADGEDELKEAF 84
+ + ED L AF
Sbjct: 89 T-LHLNKIEREDHLFAAF 105
Score = 71.0 bits (175), Expect = 2e-17
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
D AF FDKD G +T EL G + + +++ +VDQD +G I++NEF+
Sbjct: 99 DHLFAAFTYFDKDGSGYITPDELQQACEEFG--VEDVRIEELMRDVDQDNDGRIDYNEFV 156
Query: 65 QMMSK 69
MM K
Sbjct: 157 AMMQK 161
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 100 bits (251), Expect = 6e-30
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
++KEAF LFDKD D K+T ELG VMR+LG PT+ ++ ++V + D+D +G + F
Sbjct: 13 QQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETF 72
Query: 64 LQMMSKKMKGAD 75
L +M + + D
Sbjct: 73 LTIMLEYGQEVD 84
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 102 bits (256), Expect = 8e-30
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
KEAF + D D DG V+ ++ + LG+ P + EL M+ E G + F FL +
Sbjct: 20 MKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP----GPLNFTMFLSI 75
Query: 67 MSKKMKGADGEDELKEAF 84
S K+ G D E+ ++ AF
Sbjct: 76 FSDKLSGTDSEETIRNAF 93
Score = 68.3 bits (168), Expect = 2e-16
Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ + AF +FD+ E K+ + + ++ ++G + E+R E +G G ++ +F
Sbjct: 87 ETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEG-GKFDYVKFT 145
Query: 65 QMMSKKMK 72
M+ +
Sbjct: 146 AMIKGSGE 153
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 103 bits (258), Expect = 1e-29
Identities = 13/81 (16%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
++ + F+ D D G ++ E+ ++ +G + ++ ++ ++D + +G I + +F
Sbjct: 56 INNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDF 115
Query: 64 LQMMSKKMKGADGEDELKEAF 84
L K ++ F
Sbjct: 116 LAATIDKQT-YLKKEVCLIPF 135
Score = 74.5 bits (184), Expect = 1e-18
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVM--RSLGQRPTETELRDMVNEVDQDGNGTIEFNE 62
+ F FD D +GK++V EL + + + + ++ EVD +G+G I+F+E
Sbjct: 129 EVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHE 188
Query: 63 FLQMMSKK 70
F+ MMSKK
Sbjct: 189 FMLMMSKK 196
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 101 bits (255), Expect = 1e-29
Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 7 FKEAFMLFDK-DEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQ 65
+ AF F+ + G+V+ ++G+++ LG + T++ +R +++E D GNG I+F+ F
Sbjct: 15 LETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKI 74
Query: 66 MMSKKM----KGADGEDELKEAF 84
+ ++ + + EL+EAF
Sbjct: 75 IGARFLGEEVNPEQMQQELREAF 97
Score = 77.6 bits (192), Expect = 4e-20
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
+EAF L+DK+ +G ++ + ++ L + + +L M++E+D DG+GT++F EF+ +M
Sbjct: 94 REAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVM 153
Query: 68 SK 69
+
Sbjct: 154 TG 155
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 100 bits (252), Expect = 2e-29
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVN-EVDQDGNGTIEFNEFLQ 65
K+ F LFDK G + LG +R++G PT ++D++N + ++ ++
Sbjct: 6 NKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITG 65
Query: 66 MMSKKMKGAD-----GEDELKEAF 84
++ K D ++ +AF
Sbjct: 66 LIEVNEKELDATTKAKTEDFVKAF 89
Score = 78.4 bits (194), Expect = 1e-20
Identities = 21/64 (32%), Positives = 44/64 (68%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
F +AF +FDK+ GKV+V +L ++ LG++ T+ E+ +++ V+ D NG I++ +F++
Sbjct: 85 FVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIED 144
Query: 67 MSKK 70
+ ++
Sbjct: 145 VLRQ 148
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 98.7 bits (247), Expect = 2e-29
Identities = 30/69 (43%), Positives = 47/69 (68%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
KEAF LFD ++ G + EL V MR+LG + E+ +++NE D++GNG I F++FL +
Sbjct: 9 IKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDI 68
Query: 67 MSKKMKGAD 75
M++K+K D
Sbjct: 69 MTEKIKNRD 77
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 100 bits (252), Expect = 2e-29
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
D+ +E F +FDKD DGKV++ ELG +RSLG+ PT EL + +++ + F
Sbjct: 5 DQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKE---FDLATFK 61
Query: 65 QMMSKKMK-GADGEDELKEAF 84
+ K +K + E+ +AF
Sbjct: 62 TVYRKPIKTPTEQSKEMLDAF 82
Score = 75.6 bits (187), Expect = 2e-19
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
+AF DK+ +G + AEL ++ +LG T +E+ +++ EV G+G I + F+ M
Sbjct: 78 MLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDM 137
Query: 67 M 67
+
Sbjct: 138 L 138
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 99 bits (250), Expect = 6e-29
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 4 LDKFKEAFMLFD--KDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFN 61
+D K+ F LFD DG V +LG V R LG P ++ V + G ++ F
Sbjct: 8 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVF-AVGGTHKMGEKSLPFE 66
Query: 62 EFLQMMSKKMKG-ADGEDELKEAF 84
EFL M + EAF
Sbjct: 67 EFLPAYEGLMDCEQGTFADYMEAF 90
Score = 72.6 bits (179), Expect = 3e-18
Identities = 17/67 (25%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVD--QDGNGTIEFNEFL 64
+ EAF FD++ G ++ AEL V+ +LG+R ++ ++ +++ D +D G +++ +F+
Sbjct: 86 YMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFV 145
Query: 65 QMMSKKM 71
+ +
Sbjct: 146 KKVMAGP 152
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand;
NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 99.1 bits (248), Expect = 7e-29
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
+K+AF LFD+ G++ +G ++R+ GQ PT E + E++ ++ +FLQ+
Sbjct: 7 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAE----ITEIESTLPAEVDMEQFLQV 62
Query: 67 MSKKMKG--ADGEDELKEAF 84
+++ +E + F
Sbjct: 63 LNRPNGFDMPGDPEEFVKGF 82
Score = 67.5 bits (166), Expect = 2e-16
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
F + F +FDKD G + V EL V+ SLG++ + E+ +++ V +G + +++F+QM
Sbjct: 78 FVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQM 136
Query: 67 M 67
+
Sbjct: 137 I 137
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin,
myosin V, chicken, molecular motor, ATPase, ELC, IQ
motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo
sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C
1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 99.6 bits (249), Expect = 8e-29
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQD--GNGTIEFN 61
L++FKEAF LFD+ DGK+ ++ G VMR+LGQ PT E+ ++ D + ++F
Sbjct: 9 LEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFE 68
Query: 62 EFLQMMS--KKMKGADGEDELKEAF 84
FL M+ K +G ++ E F
Sbjct: 69 TFLPMLQAVAKNRGQGTYEDYLEGF 93
Score = 66.1 bits (162), Expect = 9e-16
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ + E F +FDK+ +GKV AEL V+ +LG++ TE E+ ++ +D NG I + FL
Sbjct: 87 EDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVL-AGHEDSNGCINYEAFL 145
Query: 65 QMM 67
+ +
Sbjct: 146 KHI 148
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 98.4 bits (246), Expect = 2e-28
Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
+D+ +K GK+++ R LG P+ + + + + + ++
Sbjct: 14 VDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG----DNLTYEQY 69
Query: 64 LQMMSKKMKGADGEDELKEAF 84
L+ +S + D +EL + F
Sbjct: 70 LEYLSICVHDKDNVEELIKMF 90
Score = 64.9 bits (159), Expect = 3e-15
Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
++ + F FD + G +T +++ ++ + G T+ E D +N + N I++ F
Sbjct: 84 EELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSSEDN--IDYKLFC 141
Query: 65 QMMSK 69
+ + +
Sbjct: 142 EDILQ 146
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin
regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 97.3 bits (243), Expect = 7e-28
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 4 LDKFKEAFMLFD--KDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFN 61
+++ +E F LFD DG V A++G ++R LG PTE ++ + G +
Sbjct: 8 IEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEKAYKLE 66
Query: 62 EFLQMMSK--KMKGADGEDELKEAF 84
E L + + DE EAF
Sbjct: 67 EILPIYEEMSSKDTGTAADEFMEAF 91
Score = 69.9 bits (172), Expect = 4e-17
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVD--QDGNGTIEFNE 62
D+F EAF FD++ G ++ AE+ V++ LG+R TE + D+ D +D +G I++ +
Sbjct: 85 DEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYED 144
Query: 63 FLQMMSKKM 71
++ +
Sbjct: 145 LMKKVMAGP 153
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 95.1 bits (237), Expect = 1e-27
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
L+ FKE +M FD + +G + + L ++ LG T EL+ ++ EV T + +F
Sbjct: 31 LEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDF 90
Query: 64 LQMMSKKMKG 73
L+MM K
Sbjct: 91 LRMMLGKRSA 100
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 94.2 bits (235), Expect = 2e-27
Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
++ KEAF +FDKD++G ++ +EL VM +LG++ T+ E+ M+ E D DG+G + + EF+
Sbjct: 9 EELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFV 68
Query: 65 QMMSKKMK--GADGEDELKEAF 84
+MM G +G L+ F
Sbjct: 69 KMMMTVRGGGGGNGWSRLRRKF 90
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 96.1 bits (240), Expect = 3e-27
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQR-PTETELRDMVNEVDQDGNGTIEFNEFLQ 65
FKEAF + D++ DG + +L ++G+ EL M ++ +G I F FL
Sbjct: 27 FKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAM----IKEASGPINFTVFLT 82
Query: 66 MMSKKMKGADGEDELKEAF 84
M +K+KGAD ED + AF
Sbjct: 83 MFGEKLKGADPEDVIMGAF 101
Score = 74.5 bits (184), Expect = 6e-19
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
D AF + D D G + + L ++ + G R T E+++M D G +++
Sbjct: 95 DVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNIC 154
Query: 65 QMMSKKMKGADGEDE 79
++ G D E E
Sbjct: 155 YVI---THGEDAEGE 166
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 91.8 bits (229), Expect = 1e-26
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
+ KE F + D D G +T EL ++ +G E+E++D+++ D D +GTI++ EF
Sbjct: 22 IGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEF 81
Query: 64 LQMM 67
+
Sbjct: 82 IAAT 85
Score = 26.3 bits (59), Expect = 0.70
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 42 ELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
L+++ +D D +GTI F+E + +
Sbjct: 24 GLKELFKMIDTDNSGTITFDELKDGLKR 51
Score = 24.8 bits (55), Expect = 2.0
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 53 DGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
+G I+ ++ + M++++ + LKE F
Sbjct: 1 HSSGHIDDDD--KHMAERLS-EEEIGGLKELF 29
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 95.0 bits (237), Expect = 2e-26
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
++K K F++ D+D G +T +L + G +++++D DG+G I++ EF
Sbjct: 51 VEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGL-KLPYNFDLLLDQIDSDGSGKIDYTEF 109
Query: 64 LQMMSKKMKGADGEDELKEAF 84
+ + + + + AF
Sbjct: 110 IAAALDRKQ--LSKKLIYCAF 128
Score = 69.6 bits (171), Expect = 1e-16
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPT-----ETELRDMVNEVDQDGNGTIE 59
AF +FD D DG++T AEL ++ + ++ ++ M+ +VD++ +G I+
Sbjct: 122 KLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKID 181
Query: 60 FNEFLQMM 67
F+EF +MM
Sbjct: 182 FHEFSEMM 189
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 91.5 bits (228), Expect = 2e-26
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
+ F FD + DGK++ +ELG +++LG T E+R M+ E+D DG+G I F+EF
Sbjct: 13 RERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTDGDGFISFDEFTDF 71
Query: 67 MSKKMKGADGEDELKEAF 84
++ + F
Sbjct: 72 A---RANRGLVKDVSKIF 86
Score = 24.1 bits (53), Expect = 4.5
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 42 ELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKE 82
+ + D +G+G I +E + K G+ DE++
Sbjct: 12 DRERIFKRFDTNGDGKISSSELGDAL--KTLGSVTPDEVRR 50
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 93.9 bits (234), Expect = 5e-26
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
F D+D + E + LG + E + + D++G+GT++ EFL+
Sbjct: 39 LARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRA 98
Query: 67 MSKKMKGADGEDELKEAF 84
+ M E + AF
Sbjct: 99 LRPPMS-QAREAVIAAAF 115
Score = 62.0 bits (151), Expect = 1e-13
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 8 KEAFMLFDKDEDGKVTVAEL-------GVVMRSLGQRPTETELRDMVNEVD-QDGNGTIE 59
AF D+ DG VTV +L G+ + LR ++ D + +G +
Sbjct: 112 AAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVT 171
Query: 60 FNEFLQMMSKKMKGADGEDE----LKEAF 84
EF S + ++E + A+
Sbjct: 172 LAEFQDYYSGVSASMNTDEEFVAMMTSAW 200
Score = 26.2 bits (58), Expect = 1.2
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 41 TELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
L ++D+DG+ +++ +EF Q ++K
Sbjct: 37 QGLARFFRQLDRDGSRSLDADEFRQGLAK 65
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major}
SCOP: a.39.1.8
Length = 191
Score = 92.7 bits (231), Expect = 1e-25
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ E F D D G ++V EL + S G + +++ D++ +G I F+EF
Sbjct: 27 QELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFK 86
Query: 65 QMMSKKMKGADGEDELKEAF 84
+ + ++E F
Sbjct: 87 DLHHFIL-------SMREGF 99
Score = 80.4 bits (199), Expect = 7e-21
Identities = 13/84 (15%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEF 60
++ +E F D DG++ E+ + S G + +E + ++ + D+ G++ F
Sbjct: 89 HHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGF 148
Query: 61 NEFLQMMSKKMKGADGEDELKEAF 84
++++++ ++ F
Sbjct: 149 DDYVELSIFVC-------RVRNVF 165
Score = 30.3 bits (69), Expect = 0.035
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTV 24
++ + + F +D++ G+VT
Sbjct: 155 SIFVCRVRNVFAFYDRERTGQVTF 178
Score = 26.1 bits (58), Expect = 1.3
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 27 LGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
GV S EL + VD DG+G I E +S
Sbjct: 13 TGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSS 55
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 89.2 bits (222), Expect = 1e-25
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
D + F FD + DGK++++EL +R+LG + E++ M+ E+D DG+G I+FNEF+
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGSTSAD-EVQRMMAEIDTDGDGFIDFNEFI 61
Query: 65 QMMSKKMKGADGEDELKEAF 84
+ ++ + F
Sbjct: 62 SFCNANP---GLMKDVAKVF 78
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 91.1 bits (226), Expect = 2e-25
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
L FKE +M FD + +G++ + L +M LG T E++ M++EV + TI + +F
Sbjct: 49 LTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDF 108
Query: 64 LQMMSKKMKGADGEDELKEAF 84
+ MM K + E
Sbjct: 109 VNMMLGKRSAVLKLVMMFEGK 129
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 88.3 bits (220), Expect = 2e-25
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
K F FDK++DGK+++ E V + T+ ++ E+D DGNG + +EF
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC 62
Query: 67 MSKKM 71
+ K +
Sbjct: 63 IEKML 67
Score = 24.8 bits (55), Expect = 2.0
Identities = 4/42 (9%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 41 TELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKE 82
+ + + + D++ +G + +EF ++ ++++ +
Sbjct: 1 SSAKRVFEKFDKNKDGKLSLDEFREVA-LAFSPYFTQEDIVK 41
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 85.7 bits (213), Expect = 4e-24
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP-TETELRDMVNEVDQDGNGTIEFNEF 63
++ AF +FD + DG + E +M+ +G+ P T+ E+ + + E D+DGNG I+ EF
Sbjct: 8 EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEF 67
Query: 64 LQMMSKKMKGAD 75
+ ++ K
Sbjct: 68 MDLIKKSKNALK 79
Score = 25.6 bits (57), Expect = 1.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 39 TETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKE 82
E E+ D +G+G I+F+EF +M K + + E++E
Sbjct: 6 DEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEE 49
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 85.2 bits (212), Expect = 4e-24
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
L+ + AF FD+D DG +TV EL M LGQ + EL M+ E D D +G + + EF
Sbjct: 5 LEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEF 64
Query: 64 LQMMSKK 70
+M++++
Sbjct: 65 ARMLAQE 71
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 87.7 bits (218), Expect = 9e-24
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAEL-----------GVVMRSLGQRPTETELRDMVNEVDQ 52
+ + F D + DG++ EL G + L E E+ ++ VD
Sbjct: 39 TKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDF 98
Query: 53 DGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
D NG IE++EF+ + K + L AF
Sbjct: 99 DRNGYIEYSEFVTVCMDKQL-LLSRERLLAAF 129
Score = 66.9 bits (164), Expect = 1e-15
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
++ AF FD D GK+T ELG + + ++ E D++ +G ++F EF+
Sbjct: 123 ERLLAAFQQFDSDGSGKITNEELGRLFGVTEV--DDETWHQVLQECDKNNDGEVDFEEFV 180
Query: 65 QMMSK 69
+MM K
Sbjct: 181 EMMQK 185
Score = 25.7 bits (57), Expect = 1.6
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 27 LGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72
+ + L EL + ++D +G+G ++ E ++ K M+
Sbjct: 26 MLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQ 71
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 86.9 bits (216), Expect = 9e-24
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
+ + + F D D G ++V E + L Q P ++ +++ D DGNG ++F EF
Sbjct: 5 IKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNP---LVQRVIDIFDTDGNGEVDFKEF 60
Query: 64 LQMMSKKMKGADGEDELKEAF 84
++ +S+ D E +L+ AF
Sbjct: 61 IEGVSQFSVKGDKEQKLRFAF 81
Score = 60.7 bits (148), Expect = 1e-13
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL-GQRPTETELRDMVN----EVDQDGNGTIE 59
K + AF ++D D+DG ++ EL V++ + G +T+L+ +V+ D+DG+G I
Sbjct: 75 QKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRIS 134
Query: 60 FNEFLQMMSK 69
F EF ++
Sbjct: 135 FEEFCAVVGG 144
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 86.6 bits (215), Expect = 2e-23
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
+ E F D + +G ++ E+ V+ S+G + ++ ++ +D + G I + EF
Sbjct: 38 IKYINELFYKLDTNHNGSLSHREIYTVLASVGI--KKWDINRILQALDINDRGNITYTEF 95
Query: 64 LQMMSKKMKGADGEDELKEAF 84
+ + LK AF
Sbjct: 96 MAGCYRWKN--IESTFLKAAF 114
Score = 60.0 bits (146), Expect = 3e-13
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGT------- 57
K AF DKDEDG ++ +++ ++ ++ + V G
Sbjct: 108 TFLKAAFNKIDKDEDGYISKSDIVSLVHDKVL--DNNDIDNFFLSVHSIKKGIPREHIIN 165
Query: 58 -IEFNEFLQMMSKK 70
I F EF M
Sbjct: 166 KISFQEFKDYMLST 179
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 84.2 bits (209), Expect = 1e-22
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP-TETELRDMVNEVDQDGNGTIEFNEF 63
F DKD G ++ EL + + P +R +++ D++ + F+EF
Sbjct: 7 SFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEF 66
Query: 64 LQMMSKKMKGADGEDELKEAF 84
+ + F
Sbjct: 67 TGVWKYITD-------WQNVF 80
Score = 74.2 bits (183), Expect = 1e-18
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEF 60
KY+ ++ F +D+D G + EL + G R ++ ++ + D+ G G I F
Sbjct: 70 WKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAF 129
Query: 61 NEFLQMMSKKMKGADGEDELKEAF 84
++F+Q + L + F
Sbjct: 130 DDFIQGCIVLQR-------LTDIF 146
Score = 27.6 bits (62), Expect = 0.35
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTV 24
L + + F +D D+DG + V
Sbjct: 136 CIVLQRLTDIFRRYDTDQDGWIQV 159
Score = 24.9 bits (55), Expect = 3.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 38 PTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
P ++ L ++ VD+D +G I E Q +S
Sbjct: 4 PDQSFLWNVFQRVDKDRSGVISDTELQQALSN 35
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 82.7 bits (204), Expect = 3e-22
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
L+ FK +M FD + +G + + L ++ LG T EL+ ++ EV T +++F
Sbjct: 47 LEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDF 106
Query: 64 LQMMSKKMKGADGEDELKEAF 84
L+MM K + E
Sbjct: 107 LRMMLGKRSAILRMILMYEEK 127
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 80.4 bits (199), Expect = 5e-22
Identities = 28/66 (42%), Positives = 47/66 (71%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
++ +EAF + DKD +G ++ AEL VM +LG++ T+ E+ +M+ E D DG+G + + EF+
Sbjct: 29 EEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 88
Query: 65 QMMSKK 70
QMM+ K
Sbjct: 89 QMMTAK 94
Score = 33.4 bits (77), Expect = 0.001
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 55 NGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
+ E L S MK D E+E++EAF
Sbjct: 7 HHHGSSGENLYFQSL-MKDTDSEEEIREAF 35
Score = 26.1 bits (58), Expect = 0.93
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 31 MRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
+ +E E+R+ D+DGNG I E +M+
Sbjct: 19 QSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTN 57
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 82.9 bits (205), Expect = 8e-22
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAEL-----GVVMRSLGQRPTETELRDMVNEVDQDGNGT- 57
+ + K F D + +GK+T+ E+ + L P +T+ + E G G
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME 78
Query: 58 ----IEFNEFLQMMSKKMKGADGEDELKE 82
I F +FL + + E
Sbjct: 79 YGKEIAFPQFLDGWKQLATSELKKWARNE 107
Score = 81.7 bits (202), Expect = 2e-21
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
F +FDKD G +T+ E + G P++ + D D G ++ +E +
Sbjct: 116 DAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQH 175
Query: 68 SKKMKGADGEDE 79
D E +
Sbjct: 176 LGFWYTLDPEAD 187
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 82.6 bits (204), Expect = 4e-21
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTET------ELRDMVNEVDQDGNGTI 58
+F E ++ FD D G + EL +++ L Q + E++ V++ Q +G I
Sbjct: 16 SQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKI 75
Query: 59 EFNEFLQMMSK--------KMKGADGEDELKEAF 84
E ++ + + +E + +
Sbjct: 76 GIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTW 109
Score = 67.6 bits (165), Expect = 1e-15
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTET--------ELRDMVNEVDQDGNGTI 58
F + + +D D G + EL ++ L ++ +T M+ D + +G +
Sbjct: 105 FMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKL 164
Query: 59 EFNEFLQMMSKKMKG-------ADGEDELKEAF 84
E E +++ + E +AF
Sbjct: 165 ELTEMARLLPVQENFLLKFQGIKMCGKEFNKAF 197
Score = 52.6 bits (126), Expect = 5e-10
Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNE-----VDQDGNGTIE 59
+F +AF L+D+D +G + EL +++ L ++ + + ++ + G +
Sbjct: 191 KEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLY 250
Query: 60 FNEFLQMMSKK 70
+ ++S
Sbjct: 251 RTDLALILSAG 261
Score = 33.3 bits (76), Expect = 0.004
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVM--------RSLGQRPTETELRDMVNEVDQDGNG 56
+ LFD + DGK+ + E+ ++ + G + E DQDGNG
Sbjct: 147 EYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNG 206
Query: 57 TIEFNEFLQMMSKKMKGADGEDELKE 82
I+ NE ++ + E ++
Sbjct: 207 YIDENELDALLKDLCEKNKQELDINN 232
Score = 28.7 bits (64), Expect = 0.16
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 14 FDKDEDGKVTVAELGVVM---------RSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ + +DGK+ + EL V+ Q + E + D D +G IE E
Sbjct: 67 YGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELK 126
Query: 65 QMMSK 69
+
Sbjct: 127 NFLKD 131
Score = 24.4 bits (53), Expect = 5.7
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 39 TETELRDMVNEVDQDGNGTIEFNEFLQMM 67
T ++ ++ D DG+G +E E ++
Sbjct: 14 TASQFFEIWLHFDADGSGYLEGKELQNLI 42
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 76.5 bits (189), Expect = 1e-20
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLG------QRPTETELRDMVNEVDQDGN 55
K + + AF D + DG VT EL M +L + + ++ D++ +
Sbjct: 4 KVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSD 63
Query: 56 GTIEFNEFLQMMSKKMK 72
G I EFL ++ +
Sbjct: 64 GKISKEEFLNANAELLC 80
Score = 24.1 bits (53), Expect = 3.5
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 37 RPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
+ EL ++D +G+G + E M
Sbjct: 3 CKVKAELEAAFKKLDANGDGYVTALELQTFMVT 35
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 77.9 bits (192), Expect = 5e-20
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 2 KYLDKFKEAFMLFDKDEDGKVTVAEL-----GVVMRSLGQRPTETELRDMVNEVDQDGNG 56
+++ + K F D + +GK+++ E+ +V+ +LG P + + E G G
Sbjct: 13 RWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAG 72
Query: 57 T-----IEFNEFLQMMSKKMKGADGEDELKEA 83
++ +++ K + E
Sbjct: 73 MKYGVETDWPAYIEGWKKLATDELEKYAKNEP 104
Score = 72.5 bits (178), Expect = 7e-18
Identities = 14/72 (19%), Positives = 29/72 (40%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
F + DKD++G +T+ E ++ G + + + D D +G ++ +E +
Sbjct: 112 DALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQH 171
Query: 68 SKKMKGADGEDE 79
D E
Sbjct: 172 LGFWYTMDPACE 183
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 77.5 bits (191), Expect = 5e-19
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
+ ++ F+ GK + +L V+ E L+ + V+ D G + +
Sbjct: 121 TNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITL 180
Query: 64 LQMMSKKMKGADGEDELKEAF 84
+ + + L F
Sbjct: 181 VAVANDLA-------ALVADF 194
Score = 68.3 bits (167), Expect = 1e-15
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLG-QRPTETELRDMVNEVDQDGNGTIE 59
L + + D D+ G+++ E+ V+ + + VD D + ++
Sbjct: 249 GLCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLS 308
Query: 60 FNEFLQMMSKKMK 72
+ EF+ ++
Sbjct: 309 YQEFVMLVLLMFH 321
Score = 67.5 bits (165), Expect = 3e-15
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEF 60
L F D + +G ++ E LG + D+D + + F
Sbjct: 184 ANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKS-VQDALFRYADEDESDDVGF 242
Query: 61 NEFLQMMSKKMKGADGEDELKEAF 84
+E++ + + L+ +
Sbjct: 243 SEYVHLGLCLLV-------LRILY 259
Score = 44.4 bits (105), Expect = 5e-07
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQR---PTETELRDMVNEVDQDGNGTIEFNEF 63
K +D+ + E R + + L ++ +++ D +G
Sbjct: 53 QKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRLRPS 112
Query: 64 LQMMSKKMKGADGEDELKEAF 84
M+S++ + L++ F
Sbjct: 113 KPMLSEEDT-----NILRQLF 128
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 72.0 bits (177), Expect = 1e-18
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
L + + F D + G++ E + L + + +D D +G I F EF
Sbjct: 26 LARLRSVFAACDANRSGRLEREEFRALCTELRV--RPADAEAVFQRLDADRDGAITFQEF 83
Query: 64 LQMMSKKM 71
+ +
Sbjct: 84 ARGFLGSL 91
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 74.0 bits (182), Expect = 2e-18
Identities = 17/73 (23%), Positives = 35/73 (47%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ + D D+DG V++ E ++++G T+ + N +D + NG I +EFL
Sbjct: 102 IQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFL 161
Query: 65 QMMSKKMKGADGE 77
++ + G +
Sbjct: 162 VTVNDFLFGLEET 174
Score = 66.3 bits (162), Expect = 2e-15
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQ---------RPTETELRDMVNEVDQ 52
+L K K D DG ++ + ++ + + T E + +++
Sbjct: 11 YHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGL 70
Query: 53 DGNGTIEFNEFLQMMSKKMKGADGEDELKE 82
I E + + GE++
Sbjct: 71 APGVRISVEEAAVNATDSLLKMKGEEKAMA 100
Score = 35.1 bits (81), Expect = 8e-04
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAE-LGVVMRSLGQRPTE------TELRDMVNEVDQDGNG 56
+F +++V E SL + E + M + +D D +G
Sbjct: 58 RQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDG 117
Query: 57 TIEFNEFLQMMSKKMKGADGEDELKEAF 84
+ EF + + + +D+ F
Sbjct: 118 YVSLPEFKAFL-QAVGPDLTDDKAITCF 144
Score = 28.6 bits (64), Expect = 0.16
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 42 ELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
+++ + VD G+G I ++ + + K A E E
Sbjct: 15 KMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEET 57
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 73.2 bits (180), Expect = 2e-18
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 21/101 (20%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLG---------------QRPTETELRDMVNE 49
+ F FD+D +G + ++ +++ E + +
Sbjct: 4 RRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGI 63
Query: 50 VDQDGNGTIEFNEFLQMMSKKMKGADGEDE------LKEAF 84
D+DG+ I EF+ K+++ L A
Sbjct: 64 ADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAAL 104
Score = 63.6 bits (155), Expect = 1e-14
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
A + D D DG VTVA+ + + G E R +D DG+G + E +
Sbjct: 101 HAALGVADTDGDGAVTVADTARALTAFGV--PEDLARQAAAALDTDGDGKVGETEIVPAF 158
Score = 33.9 bits (78), Expect = 0.002
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 15 DKDEDGKVTVAE-LGVVMRSLGQRPTETE------LRDMVNEVDQDGNGTIEFNEFLQMM 67
D+D D ++T E + ++ L +P L + D DG+G + + + +
Sbjct: 65 DRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARAL 124
Query: 68 SKKMKGADGEDELKEAF 84
G ED ++A
Sbjct: 125 --TAFGVP-EDLARQAA 138
Score = 27.8 bits (62), Expect = 0.29
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 40 ETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
E + DQDGNG I+ ++F
Sbjct: 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKA 32
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 74.0 bits (182), Expect = 4e-18
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ + FM D+D G + + EL + G R + M+ D D NG I F EF+
Sbjct: 51 TRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFM 110
Query: 65 QMMSK 69
M
Sbjct: 111 AMYKF 115
Score = 59.4 bits (144), Expect = 1e-12
Identities = 8/67 (11%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEF 60
K+++ F++ + G + E+ ++ LG + +++ + G +
Sbjct: 113 YKFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQ-RTSLLLHRLFARGMAFCDL 171
Query: 61 NEFLQMM 67
N ++ +
Sbjct: 172 NCWIAIC 178
Score = 27.4 bits (61), Expect = 0.51
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 38 PTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70
T + VD+D +GT+E NE +
Sbjct: 48 DQYTRIYQWFMGVDRDRSGTLEINELMMGQFPG 80
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 69.8 bits (171), Expect = 1e-17
Identities = 12/75 (16%), Positives = 27/75 (36%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ F FD + ++ E + Q T+ + + NE+ + G +++ +FL
Sbjct: 24 HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFL 83
Query: 65 QMMSKKMKGADGEDE 79
S +
Sbjct: 84 SRFSSETAATPMATG 98
Score = 25.1 bits (55), Expect = 2.0
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 40 ETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
+ D TI EF + ++
Sbjct: 23 YHAITQEFENFDTMKTNTISREEFRAICNR 52
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 71.7 bits (176), Expect = 2e-17
Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
L + F D+++ G ++ +L + +L P ++ DG+ ++F F
Sbjct: 28 LLRLHHRFRALDRNKKGYLSRMDLQQ-IGALAVNPLG---DRIIESFFPDGSQRVDFPGF 83
Query: 64 LQMMSKKMKGADGEDELKEAF 84
+++++ D + E ++
Sbjct: 84 VRVLAHFRPVEDEDTETQDPK 104
Score = 62.9 bits (153), Expect = 4e-14
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL-GQRPTETELRD----MVNEVDQDGNGTIE 59
+K AF L+D D DGK++ E+ V+R + G + TE +L + V E D+DG+G +
Sbjct: 114 NKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVS 173
Query: 60 FNEFLQMMSK 69
F EF + + K
Sbjct: 174 FVEFTKSLEK 183
Score = 30.5 bits (69), Expect = 0.037
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 3/78 (3%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
F F ED + + +L D D +G I +E L
Sbjct: 81 PGFVRVLAHFRPVEDEDTETQDPKKPEPLNSR---RNKLHYAFQLYDLDRDGKISRHEML 137
Query: 65 QMMSKKMKGADGEDELKE 82
Q++ + E++L+
Sbjct: 138 QVLRLMVGVQVTEEQLEN 155
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 69.2 bits (170), Expect = 2e-17
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSL---GQRPTETELRDMVNEVDQDGNGT 57
K D K+ F + DKD+ G + ELG +++ + + E + ++ D+DG+G
Sbjct: 37 KKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGK 96
Query: 58 IEFNEFLQMMSK 69
I EF ++++
Sbjct: 97 IGVEEFSTLVAE 108
Score = 35.3 bits (82), Expect = 3e-04
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 33 SLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
S+ + +++ + + + +F QM+ K K D++K+ F
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAAD--SFDHKKFFQMVGLKKK---SADDVKKVF 47
Score = 27.3 bits (61), Expect = 0.41
Identities = 9/73 (12%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 12 MLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71
+ + ++ + + +++ + + +D+D +G IE +E ++
Sbjct: 14 AIGAFTAADSFDHKKFFQMVGLKKK--SADDVKKVFHILDKDKSGFIEEDELGSILKGFS 71
Query: 72 KGADG--EDELKE 82
A E K
Sbjct: 72 SDARDLSAKETKT 84
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 71.4 bits (175), Expect = 3e-17
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 7 FKEAFMLF-DKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQ 65
+E + F ++ G + + E + + M D +G+ TI+F E++
Sbjct: 24 LQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVA 83
Query: 66 MMSKKMKGADGEDELKEAF 84
++ ++G E +LK F
Sbjct: 84 ALNLVLRG-TLEHKLKWTF 101
Score = 44.4 bits (105), Expect = 3e-07
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 17/82 (20%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELR-----------------DMV 47
K K F ++DKD +G + EL ++ S+ + + +
Sbjct: 95 HKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIF 154
Query: 48 NEVDQDGNGTIEFNEFLQMMSK 69
VD++G+G + NEF++ +
Sbjct: 155 LLVDENGDGQLSLNEFVEGARR 176
Score = 35.2 bits (81), Expect = 7e-04
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMS-- 68
F FD + D + E + + + E +L+ D+D NG I+ E L ++
Sbjct: 65 FRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESI 124
Query: 69 KKMKGADGEDELKE 82
K+K A + E
Sbjct: 125 YKLKKACSVEVEAE 138
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 69.7 bits (171), Expect = 3e-17
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLG-QRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
+ F L E +T L LG + ++ + + MV E D DG+G + EF +
Sbjct: 43 CKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVL 102
Query: 67 MSKKMKG--ADGEDELKEAF 84
M + D E L++A
Sbjct: 103 MVRLSPEMMEDAETWLEKAL 122
Score = 60.8 bits (148), Expect = 9e-14
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 40 ETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
E + M+ E ++ + L +M++KM + EL + F
Sbjct: 2 EPTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGF 46
Score = 28.8 bits (65), Expect = 0.12
Identities = 5/70 (7%), Positives = 17/70 (24%), Gaps = 1/70 (1%)
Query: 14 FDKDEDGKVTVAE-LGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72
+ + L V+ + +EL + + I +
Sbjct: 12 TTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGI 71
Query: 73 GADGEDELKE 82
+++ +
Sbjct: 72 EGMSKEDAQG 81
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 68.8 bits (169), Expect = 3e-17
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP---TETELRDMVNEVDQDGNGTIEFN 61
+ K+ F D D+ G + EL ++ TE+E + +++ D DG+G I +
Sbjct: 41 SQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGAD 100
Query: 62 EFLQMM 67
EF +M+
Sbjct: 101 EFQEMV 106
Score = 26.9 bits (60), Expect = 0.43
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 40 ETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADG--EDELKE 82
++++D+ +D D +G ++ +E + K A E E K
Sbjct: 40 ASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKS 84
Score = 25.3 bits (56), Expect = 1.6
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 33 SLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
S+ + ++ + E T E +F Q ++K+ F
Sbjct: 1 SITDILSAEDIAAALQECQ--DPDTFEPQKFFQTSGLSKM---SASQVKDIF 47
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 68.8 bits (169), Expect = 4e-17
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSL---GQRPTETELRDMVNEVDQDGNGT 57
+ K+ F D D G + EL V++S G+ T+ E + + D+DG+G
Sbjct: 38 AMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGK 97
Query: 58 IEFNEFLQMMSK 69
I +EF ++ +
Sbjct: 98 IGIDEFETLVHE 109
Score = 49.1 bits (118), Expect = 2e-09
Identities = 6/52 (11%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 33 SLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
+ +++ ++ V G+ +F ++ K +++K+ F
Sbjct: 2 AAKDLLKADDIKKALDAVK--AEGSFNHKKFFALVGLKAM---SANDVKKVF 48
Score = 27.2 bits (61), Expect = 0.45
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 12 MLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71
L +G + ++ + + +++ + +D D +G IE E ++
Sbjct: 15 ALDAVKAEGSFNHKKFFALVGL--KAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFA 72
Query: 72 KGADG--EDELKE 82
+ E K
Sbjct: 73 ADGRDLTDAETKA 85
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 71.5 bits (175), Expect = 4e-17
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP-TETELRDMVNEVDQDGNGTIEFNEF 63
+ F D + V E + L + + E+D++G G++ F+EF
Sbjct: 130 FELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEF 189
Query: 64 LQMMSKKMKGADGEDE 79
S ADG+ +
Sbjct: 190 AAWASAVKLDADGDPD 205
Score = 68.4 bits (167), Expect = 4e-16
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELG-VVMRSLGQRPTETELRDMVN---------EVDQDG 54
+ E F FDK+E GK+ E+ + L + +RD+ +
Sbjct: 48 QRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLEN 107
Query: 55 NGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
G+ +F EFL+ + EL F
Sbjct: 108 KGSEDFVEFLEFRL-MLCYIYDFFELTVMF 136
Score = 37.2 bits (86), Expect = 1e-04
Identities = 14/70 (20%), Positives = 23/70 (32%)
Query: 15 DKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGA 74
+ G E L EL M +E+D GN ++ EF + + K
Sbjct: 104 KLENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWG 163
Query: 75 DGEDELKEAF 84
++ F
Sbjct: 164 AKVEDPAALF 173
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 68.4 bits (168), Expect = 5e-17
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSL---GQRPTETELRDMVNEVDQDGNGT 57
K + KE F + DKD+ G + EL V++ G+ +TE + ++ D D +G
Sbjct: 37 GKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGK 96
Query: 58 IEFNEFLQMMSK 69
I +EF +M+++
Sbjct: 97 IGADEFAKMVAQ 108
Score = 43.3 bits (103), Expect = 3e-07
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 39 TETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
++ ++ GT ++ F ++ K K + ++KE F
Sbjct: 7 KADDINKAISAFK--DPGTFDYKRFFHLVGLKGK---TDAQVKEVF 47
Score = 26.4 bits (59), Expect = 0.85
Identities = 10/73 (13%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 12 MLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71
+ + G ++ G+ + +++++ +D+D +G IE E ++
Sbjct: 14 AISAFKDPGTFDYKRFFHLVGLKGKT--DAQVKEVFEILDKDQSGFIEEEELKGVLKGFS 71
Query: 72 KGADG--EDELKE 82
+ E K
Sbjct: 72 AHGRDLNDTETKA 84
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 67.2 bits (165), Expect = 6e-17
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 1 MKYLDKFKEAFMLFDKDED--GKVTVAELGVVMRSLGQR--PTETELRDMVNEVDQDGNG 56
MK ++ K AF +F E +++ EL +VM++LG + L +M+ EVD++G+G
Sbjct: 1 MKSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDG 60
Query: 57 TIEFNEFLQMMSKKMK 72
+ F EFL MM K +
Sbjct: 61 EVSFEEFLVMMKKISQ 76
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 70.6 bits (173), Expect = 6e-17
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQ---------RPTETELRDMVNEVDQ 52
K L + + F FD D DGK+ + E+ + Q +R
Sbjct: 33 KMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGV 92
Query: 53 DGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
+ + ++++ + + E
Sbjct: 93 EPVNGLLREDWVEANRVFAEAERERERRGEPS 124
Score = 62.9 bits (153), Expect = 5e-14
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ + D D DG V V EL +M++ + + D D +G +E E +
Sbjct: 128 LLSNSYYDVLDDDGDGTVDVDELKTMMKAFDV--PQEAAYTFFEKADTDKSGKLERTELV 185
Query: 65 QMMSK 69
+ K
Sbjct: 186 HLFRK 190
Score = 28.6 bits (64), Expect = 0.14
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 14/94 (14%)
Query: 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETE-----------LRDMVNEV 50
K D + F+ + + + R + E E + +
Sbjct: 78 KMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVL 137
Query: 51 DQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
D DG+GT++ +E MM K ++ F
Sbjct: 138 DDDGDGTVDVDELKTMM--KAFDVP-QEAAYTFF 168
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 67.6 bits (166), Expect = 1e-16
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSL---GQRPTETELRDMVNEVDQDGNGT 57
K LD K+AF + D+D+ G + EL + +++ + T+ E + + + D+DG+G
Sbjct: 37 SKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGM 96
Query: 58 IEFNEFLQMM 67
I +EF M+
Sbjct: 97 IGVDEFAAMI 106
Score = 39.9 bits (94), Expect = 6e-06
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 39 TETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
+ ++ + + + EF + K D++K+AF
Sbjct: 7 KDADVAAALAACS--AADSFKHKEFFAKVGLASK---SLDDVKKAF 47
Score = 25.6 bits (57), Expect = 1.6
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 39 TETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADG--EDELKE 82
+ +++ +DQD +G IE +E + A + E K
Sbjct: 39 SLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKA 84
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 67.7 bits (166), Expect = 1e-16
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP---TETELRDMVNEVDQDGNGTIEFN 61
+ KE F + D D+ G + EL ++ T +E + + D DG+G I
Sbjct: 41 SQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAE 100
Query: 62 EFLQMM 67
EF +M+
Sbjct: 101 EFQEMV 106
Score = 28.0 bits (63), Expect = 0.20
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 12 MLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKM 71
L D + + + + + ++L+++ +D D +G IE +E + +
Sbjct: 14 ALRDCQAPDSFSPKKFFQISGMSKK--SSSQLKEIFRILDNDQSGFIEEDELKYFLQRFE 71
Query: 72 KGADG--EDELKE 82
GA E K
Sbjct: 72 SGARVLTASETKT 84
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 68.3 bits (167), Expect = 3e-16
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETEL-----RDMVNEVDQDGNGTIE 59
D F +DG++ EL + G R MV+ +D+D +GT+
Sbjct: 33 DPLYGYFA-AVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMG 91
Query: 60 FNEFLQMMSKKMK 72
FNEF ++ +
Sbjct: 92 FNEFKELWAVLNG 104
Score = 57.5 bits (139), Expect = 4e-12
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEF 60
L+ +++ F+ FD D G V EL + ++G R + + + + G I F
Sbjct: 99 WAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN--GKITF 156
Query: 61 NEFLQMMSKKMKGADGEDELKEAF 84
++++ K L ++F
Sbjct: 157 DDYIACCVKLRA-------LTDSF 173
Score = 27.4 bits (61), Expect = 0.50
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTV 24
L ++F D + G V
Sbjct: 163 CVKLRALTDSFRRRDTAQQGVVNF 186
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 65.7 bits (161), Expect = 5e-16
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSL---GQRPTETELRDMVNEVDQDGNGT 57
K D K+AF + D+D+ G + EL + ++ + T+ E + + D DG+G
Sbjct: 38 AKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGA 97
Query: 58 IEFNEFLQMM 67
I +E+ ++
Sbjct: 98 IGVDEWAALV 107
Score = 44.5 bits (106), Expect = 9e-08
Identities = 6/52 (11%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 33 SLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
+ + ++ + + + + F + K D++K+AF
Sbjct: 2 AFSGILADADVAAALKACE--AADSFNYKAFFAKVGLTAK---SADDIKKAF 48
Score = 26.1 bits (58), Expect = 1.1
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 39 TETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADG--EDELKE 82
+ +++ +DQD +G IE +E + GA + E K
Sbjct: 40 SADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKA 85
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 65.4 bits (160), Expect = 8e-16
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP---TETELRDMVNEVDQDGNGT 57
K D+ K+ F + D+D+ G + EL + +++ T E + + D DG+G
Sbjct: 38 SKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGK 97
Query: 58 IEFNEFLQMM 67
I EF ++
Sbjct: 98 IGVEEFQSLV 107
Score = 34.2 bits (79), Expect = 0.001
Identities = 5/52 (9%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 33 SLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
++ + ++ ++ + + F + K D++K+ F
Sbjct: 2 AITDILSAKDIESALSSCQ--AADSFNYKSFFSTVGLSSK---TPDQIKKVF 48
Score = 28.0 bits (63), Expect = 0.16
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 39 TETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADG--EDELKE 82
T +++ + +DQD +G IE E + A E K
Sbjct: 40 TPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKA 85
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 63.7 bits (156), Expect = 1e-15
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
+ F D + DG V+ E+ + E L+ + +D DGNG I+ NEF +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 68 S 68
Sbjct: 63 G 63
Score = 38.7 bits (91), Expect = 8e-06
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 43 LRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
+ E+D +G+G + + E +SKK + E L+ F
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKN-EQLLQLIF 42
Score = 23.3 bits (51), Expect = 6.0
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL 34
+ F D D +G++ E S+
Sbjct: 36 QLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 68.6 bits (168), Expect = 2e-15
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
++ + AF +FDKD GK++ EL + EL ++ +VD + +G ++FNEF+
Sbjct: 417 ERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFV 476
Query: 65 QMMSKKMK 72
+M+ ++
Sbjct: 477 EMLQNFVR 484
Score = 53.5 bits (129), Expect = 3e-10
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 15/95 (15%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP--------------TETELRDMVNE 49
+ E F D + DG + EL + E ++ ++
Sbjct: 330 TKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPL 389
Query: 50 VDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
+D DG+G+IE++EF+ + + ++ AF
Sbjct: 390 LDMDGSGSIEYSEFI-ASAIDRTILLSRERMERAF 423
Score = 32.0 bits (73), Expect = 0.013
Identities = 14/74 (18%), Positives = 25/74 (33%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
D+ L D D G + +E + + D+DG+G I E
Sbjct: 381 DQIDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKELF 440
Query: 65 QMMSKKMKGADGED 78
++ S+ E+
Sbjct: 441 KLFSQADSSIQMEE 454
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 65.5 bits (160), Expect = 3e-15
Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 22/102 (21%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAEL----GVVMRSLGQRPTETELRD-----------MVNE 49
D+ K+ F +D D +G + A+ + + G+ E++ + E
Sbjct: 7 DRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKE 66
Query: 50 VDQDGNGTIEFNEFLQMMSKKMKGADGED-------ELKEAF 84
+G++ +F+++ + +K
Sbjct: 67 AGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIV 108
Score = 62.8 bits (153), Expect = 3e-14
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
K + DK+ DG++ E + +LG ++ E + N+VD +GNG + +E L +
Sbjct: 105 KGIVGMCDKNADGQINADEFAAWLTALGM--SKAEAAEAFNQVDTNGNGELSLDELLTAV 162
Score = 32.8 bits (75), Expect = 0.005
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 15 DKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNE--------VDQDGNGTIEFNEFLQM 66
DG +T + V +L E ++ D++ +G I +EF
Sbjct: 68 GVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAW 127
Query: 67 MSKKMKGADGEDELKEAF 84
+ G + E EAF
Sbjct: 128 L--TALGMS-KAEAAEAF 142
Score = 28.2 bits (63), Expect = 0.25
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 40 ETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72
L+ + D DGNG +E +F + +
Sbjct: 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAE 38
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 64.7 bits (158), Expect = 4e-15
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 11 FMLFDK--DEDGKVTVAELGVVMRSLGQRPTETEL-----RDMVNEVDQDGNGTIEFNEF 63
+ F +DG+V EL + G T + R M+ +D+D G + FN F
Sbjct: 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
Query: 64 LQMMSKKMKGADGEDELKEAF 84
++ + KE F
Sbjct: 63 KELWAALNA-------WKENF 76
Score = 57.0 bits (138), Expect = 4e-12
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEF 60
L+ +KE FM D+D G V EL + +G R + L +V ++ G I F
Sbjct: 66 WAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKN--GRIFF 123
Query: 61 NEFLQMMSKKMK 72
++++ K
Sbjct: 124 DDYVACCVKLRA 135
Score = 26.6 bits (59), Expect = 0.87
Identities = 4/24 (16%), Positives = 6/24 (25%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTV 24
L + F D + G
Sbjct: 130 CVKLRALTDFFRKRDHLQQGSANF 153
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 64.8 bits (158), Expect = 9e-15
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
+ + F DK E+G ++ + + L P ++N +G + F F
Sbjct: 28 ITRLYSRFTSLDKGENGTLSREDFQR-IPELAINPLG---DRIINAFFSEGEDQVNFRGF 83
Query: 64 LQMMSKKMKGADGEDELKE 82
++ ++ D E
Sbjct: 84 MRTLAHFRPIEDNEKSKDV 102
Score = 57.1 bits (138), Expect = 8e-12
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL-GQRPTETELRDMV----NEVDQDGNGTIE 59
+K AF L+D D+D K++ EL V+R + G ++ +L + E DQDG+ I
Sbjct: 113 NKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAIS 172
Query: 60 FNEFLQMMSK 69
F EF++++ K
Sbjct: 173 FTEFVKVLEK 182
Score = 28.2 bits (63), Expect = 0.21
Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 16/88 (18%)
Query: 11 FMLFDKDEDGKVTVAE-LGVVMRSLGQRPTETELRDMVNEV---------------DQDG 54
F + + +V + + E E D D
Sbjct: 67 INAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDK 126
Query: 55 NGTIEFNEFLQMMSKKMKGADGEDELKE 82
+ I +E LQ++ + +++L
Sbjct: 127 DDKISRDELLQVLRMMVGVNISDEQLGS 154
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 64.3 bits (156), Expect = 3e-14
Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 20/98 (20%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQR--PTETELRDMVNEV--------DQDGNG 56
F + + FD D++G + EL R + ++ P + + V ++ D +G
Sbjct: 13 FLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDG 72
Query: 57 TIEFNEFLQMM----------SKKMKGADGEDELKEAF 84
++ E M+ ++ D E + +
Sbjct: 73 RLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIW 110
Score = 53.5 bits (128), Expect = 2e-10
Identities = 13/99 (13%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP--------TETELRDMVNEVDQDGNG 56
+F + + +D D G ++ AEL ++ L + + M+ D++ +G
Sbjct: 104 VEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDG 163
Query: 57 TIEFNEFLQMMSKK-----------MKGADGEDELKEAF 84
++ N+ ++++ + + + + ++ F
Sbjct: 164 RLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIF 202
Score = 50.1 bits (119), Expect = 4e-09
Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPT--------ETELRDMVNEVDQDGNG 56
F++ F +D G + E+ ++ + + + ++ D + +G
Sbjct: 196 RDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDG 255
Query: 57 TIEFNEFLQMMSKKMK 72
I+ +E + K K
Sbjct: 256 KIQKSELALCLGLKHK 271
Score = 28.9 bits (64), Expect = 0.14
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 11/84 (13%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVM-----------RSLGQRPTETELRDMVNEVDQD 53
K +D DG++ + EL ++ R E + + D D
Sbjct: 57 QIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDAD 116
Query: 54 GNGTIEFNEFLQMMSKKMKGADGE 77
+G I E + +
Sbjct: 117 SSGYISAAELKNFLKDLFLQHKKK 140
Score = 28.9 bits (64), Expect = 0.14
Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMR------------SLGQRPTETELRDMVNEVDQ 52
+ +FDK++DG++ + +L ++ + Q + + + D
Sbjct: 148 EYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDV 207
Query: 53 DGNGTIEFNEFLQMMSKKMKGADGEDELKE 82
G +E E + M+ +
Sbjct: 208 SRTGALEGPEVDGFVKDMMELVRPSISGGD 237
Score = 26.6 bits (58), Expect = 1.0
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 39 TETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKE 82
+ D D NG IE E +K +D++ +
Sbjct: 9 DAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITD 52
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal
binding protein; NMR {Neanthes diversicolor} SCOP:
a.39.1.5 PDB: 2scp_A
Length = 174
Score = 62.8 bits (153), Expect = 3e-14
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTET-----ELRDMVNEV------D 51
++ K K F D D+DG +T + + + L D + V
Sbjct: 4 WVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTA 63
Query: 52 QDGNGTIEFNEFLQMMSKKMKGADGEDELKEA 83
G I+ F+ M + +K + + ++
Sbjct: 64 VAGGKGIDETTFINSMKEMVKNPEAKSVVEGP 95
Score = 60.5 bits (147), Expect = 2e-13
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
F D +ED ++ E G+ LG +T + +D + +G + EF+
Sbjct: 97 PLFFRAVDTNEDNNISRDEYGIFFGMLG--LDKTMAPASFDAIDTNNDGLLSLEEFVIAG 154
Score = 33.2 bits (76), Expect = 0.003
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 8/78 (10%)
Query: 12 MLFDKDEDGKVTVAELGVVMRSLGQRPTETE-----LRDMVNEVDQDGNGTIEFNEFLQM 66
L + M+ + + P L VD + + I +E+
Sbjct: 60 FLTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIF 119
Query: 67 MSKKMKGADGEDELKEAF 84
M G D + +F
Sbjct: 120 F--GMLGLD-KTMAPASF 134
Score = 31.6 bits (72), Expect = 0.012
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 42 ELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
+++ N +D D +G I +F M + K ++ + E +
Sbjct: 7 KMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVL 49
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 60.9 bits (148), Expect = 7e-13
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
++ + AF LFD D+ GK+T EL + +E D++ E DQ+ + I+F+EF+
Sbjct: 435 ERLRRAFNLFDTDKSGKITKEELANLFGLTS--ISEKTWNDVLGEADQNKDNMIDFDEFV 492
Query: 65 QMMSK 69
MM K
Sbjct: 493 SMMHK 497
Score = 57.0 bits (138), Expect = 2e-11
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP--------TETELRDMVNEVDQDGN 55
+ + F DK+ DG++ EL L E E+ +++ EVD D N
Sbjct: 354 RKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKN 413
Query: 56 GTIEFNEFLQMMSKKMKGADGEDELKEAF 84
G IE++EF+ + + E+ L+ AF
Sbjct: 414 GYIEYSEFI-SVCMDKQILFSEERLRRAF 441
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 60.9 bits (148), Expect = 7e-13
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
++ + AF +FD D GK++ EL + + +++EVD++ +G ++F+EF
Sbjct: 418 ERLERAFRMFDSDNSGKISSTELATIFG--VSDVDSETWKSVLSEVDKNNDGEVDFDEFQ 475
Query: 65 QMMSK 69
QM+ K
Sbjct: 476 QMLLK 480
Score = 54.7 bits (132), Expect = 1e-10
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRS-----------LGQRPTETELRDMVNEVDQ 52
+ F DK+ DG++ AEL + L E E+ +++ VD
Sbjct: 334 TKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDF 393
Query: 53 DGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
D NG IE++EF+ + + + L+ AF
Sbjct: 394 DKNGYIEYSEFVTVAMDRKT-LLSRERLERAF 424
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 59.1 bits (143), Expect = 1e-12
Identities = 12/96 (12%), Positives = 35/96 (36%), Gaps = 16/96 (16%)
Query: 5 DKFKEAF-MLFDKDEDGKVTVAELGVVMRSLG---------------QRPTETELRDMVN 48
+K F +D + DG + + + ++ + + + +
Sbjct: 12 NKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRK 71
Query: 49 EVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
D++ + + E+L+M ++ +K + + L E
Sbjct: 72 YADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWL 107
Score = 57.2 bits (138), Expect = 6e-12
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
F + D D + E V S G +++ + + G + F ++
Sbjct: 112 NFMFDVNDTSGDNIIDKHEYSTVYMSYG--IPKSDCDAAFDTLSDGGKTMVTREIFARLW 169
Score = 32.9 bits (75), Expect = 0.005
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETE---------LRDMVNEVDQD 53
+ D++ED +VT E + + + E + M + D
Sbjct: 62 LKLIWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTS 121
Query: 54 GNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
G+ I+ +E+ + G + + AF
Sbjct: 122 GDNIIDKHEYSTVY--MSYGIP-KSDCDAAF 149
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 58.5 bits (142), Expect = 1e-12
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 13/85 (15%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETEL-----RDMVNEVDQDGNGTIE 59
D F +DG++ EL + G R MV+ +D+D +GT+
Sbjct: 2 DPLYGYFASV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMG 60
Query: 60 FNEFLQMMSKKMKGADGEDELKEAF 84
FNEF ++ + + ++ F
Sbjct: 61 FNEFKELWAV-------LNGWRQHF 78
Score = 55.9 bits (135), Expect = 1e-11
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEF 60
L+ +++ F+ FD D G V EL + ++G R + + G I F
Sbjct: 68 WAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGK--ITF 125
Query: 61 NEFLQMMSKKMK 72
++++ K
Sbjct: 126 DDYIACCVKLRA 137
Score = 26.2 bits (58), Expect = 0.99
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTV 24
L ++F D + G V
Sbjct: 132 CVKLRALTDSFRRRDSAQQGMVNF 155
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 60.5 bits (147), Expect = 1e-12
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
DK + AF FD+D +GK++V EL V ++M++ +D + +G ++F EF
Sbjct: 426 DKLESAFQKFDQDGNGKISVDELASVFG--LDHLESKTWKEMISGIDSNNDGDVDFEEFC 483
Query: 65 QMMSKKMKGAD 75
+M+ K +
Sbjct: 484 KMIQKLCSNNE 494
Score = 55.9 bits (135), Expect = 5e-11
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRP--------TETELRDMVNEVDQDGN 55
+ + F DK+ DG++ EL L E+E+ ++ D D N
Sbjct: 345 TKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRN 404
Query: 56 GTIEFNEFLQMMSKKMKGADGEDELKEAF 84
G I+++EF+ ++ K +D+L+ AF
Sbjct: 405 GYIDYSEFV-TVAMDRKSLLSKDKLESAF 432
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 59.0 bits (143), Expect = 1e-12
Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMV-NEVDQDGNGTIEFNE 62
++ + FM + G++T+ E P+ + + + D + +G I+F E
Sbjct: 16 CHQWYKKFM--TECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFME 73
Query: 63 FLQMMSKKMKGADGEDELKEAF 84
++ +S +KG + +L+ F
Sbjct: 74 YVAALSLVLKG-KVDQKLRWYF 94
Score = 47.1 bits (112), Expect = 3e-08
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETE-------LRDMVNEVDQDGNGT 57
K + F L+D D +G + EL +++++ E + +++D +G+G
Sbjct: 88 QKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGE 147
Query: 58 IEFNEFLQMMSK 69
+ EF++ + K
Sbjct: 148 LSLEEFMEGVQK 159
Score = 36.3 bits (84), Expect = 3e-04
Identities = 16/71 (22%), Positives = 29/71 (40%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70
F FD ++DG + E + + + + +LR D DGNG I+ E L ++
Sbjct: 58 FETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAI 117
Query: 71 MKGADGEDELK 81
+ +
Sbjct: 118 RAINRCNEAMT 128
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 59.0 bits (143), Expect = 1e-12
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMV-NEVDQDGNGTIEFNE 62
+ FM + G T+ E ++ G + D V N D + +G ++F E
Sbjct: 21 THVWYRTFM--MEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLE 78
Query: 63 FLQMMSKKMKGADGEDELKEAF 84
F+ ++ M+ E +LK F
Sbjct: 79 FIAAVNLIMQE-KMEQKLKWYF 99
Score = 51.3 bits (123), Expect = 1e-09
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQ------RPTETELRDMVNEVDQDGNGTI 58
K K F L+D D +G + EL + ++ E + + +++D + +G +
Sbjct: 93 QKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGEL 152
Query: 59 EFNEFLQMMSK 69
EF+ M+K
Sbjct: 153 TLEEFINGMAK 163
Score = 35.9 bits (83), Expect = 5e-04
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70
+ FD ++DG V E + + Q E +L+ D DGNG+I+ NE L M
Sbjct: 63 YNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAV 122
Query: 71 MKGADGEDELKEAF 84
+ E F
Sbjct: 123 QALNGQQTLSPEEF 136
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8
PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 57.4 bits (139), Expect = 4e-12
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTET--------ELRDMVNEVDQDGNG 56
+F+ F D D +V+ EL ++ + R + R MV +D D G
Sbjct: 4 RQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTG 62
Query: 57 TIEFNEFLQMMSKKMK 72
+ F EF + + K
Sbjct: 63 KLGFEEFKYLWNNIKK 78
Score = 52.0 bits (125), Expect = 4e-10
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEF 60
+ K++ + FD D G + +EL + G E L M+ D G ++F
Sbjct: 73 WNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNE-HLYSMIIRRYSDEGGNMDF 131
Query: 61 NEFLQMMSKKMKGADGEDELKEAF 84
+ F+ + + D + AF
Sbjct: 132 DNFISCLVR-------LDAMFRAF 148
Score = 26.2 bits (58), Expect = 1.0
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAE---LGVVMRS 33
+ LD AF DKD G++ V L + M S
Sbjct: 138 LVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS 173
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 53.2 bits (128), Expect = 5e-11
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
K+++ F DK G +T + ++ + +L + N D D +G + EF+
Sbjct: 14 LKYRQLFNSHDKTMSGHLTGPQARTILMQSSL--PQAQLASIWNLSDIDQDGKLTAEEFI 71
Query: 65 QMM---SKKMKGAD 75
M M G
Sbjct: 72 LAMHLIDVAMSGQP 85
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 53.8 bits (129), Expect = 1e-10
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
F D DG V + E ++ ++ + N + G T + N + ++
Sbjct: 108 PFLFKGMDVSGDGIVDLEEFQNYCKNFQL--QCADVPAVYNVITDGGKVTFDLNRYKELY 165
Score = 48.8 bits (116), Expect = 9e-09
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 16/95 (16%)
Query: 6 KFKEAF-MLFDKDEDGKVTVAELGVVMRSLG---------------QRPTETELRDMVNE 49
K K F D + DG + + +M Q E E RD+
Sbjct: 9 KIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGR 68
Query: 50 VDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
D + + + + E+L M K + +L
Sbjct: 69 ADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWC 103
Score = 30.7 bits (69), Expect = 0.032
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 3 YLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETE---------LRDMVNEVDQD 53
D++++ D ++D V+ E + + + +D
Sbjct: 58 LEDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVS 117
Query: 54 GNGTIEFNEFLQMMSK 69
G+G ++ EF
Sbjct: 118 GDGIVDLEEFQNYCKN 133
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 49.7 bits (119), Expect = 7e-10
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
K+ E F+ DKD DG V+ E+ + G T L + + D G + ++F
Sbjct: 10 AKYDEIFLKTDKDMDGFVSGLEVREIFLKTGL--PSTLLAHIWSLCDTKDCGKLSKDQFA 67
Query: 65 QMM 67
Sbjct: 68 LAF 70
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 51.7 bits (124), Expect = 1e-09
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL----GQRPTETELRDMVN----EVDQDGNG 56
DK +F L+D + G + E+ ++ + G +T + D+++ E D +G
Sbjct: 122 DKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDG 181
Query: 57 TIEFNEFLQMMSK 69
I+ E+ ++ +
Sbjct: 182 KIDKEEWRSLVLR 194
Score = 44.4 bits (105), Expect = 4e-07
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 4 LDKFKEAFMLFDKD--EDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFN 61
++ E F +DG + E + + ++ + + + D NG + F
Sbjct: 47 IEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESL-FADRVFDLFDTKHNGILGFE 105
Query: 62 EFLQMMSKKMKGADGEDELKEAF 84
EF + +S A +D++ +F
Sbjct: 106 EFARALSVFHPNAPIDDKIHFSF 128
Score = 29.8 bits (67), Expect = 0.060
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQR-PTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
F LFD +G + E + P + ++ D G IE E QM+
Sbjct: 91 FDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVA 150
Query: 70 --KMKGADGEDELKEAF 84
G + +D + E
Sbjct: 151 TLAESGMNLKDTVIEDI 167
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 52.2 bits (124), Expect = 1e-09
Identities = 19/81 (23%), Positives = 41/81 (50%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
+++F+ +F FD+ + G + + + S+G E E +++ VD + G + F F
Sbjct: 724 MNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAF 783
Query: 64 LQMMSKKMKGADGEDELKEAF 84
+ MS++ D D++ +F
Sbjct: 784 IDFMSRETADTDTADQVMASF 804
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 48.9 bits (117), Expect = 1e-09
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ F D +G + + EL + D D +G + +EF
Sbjct: 9 QYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKL--PILELSHIWELSDFDKDGALTLDEFC 66
Query: 65 QMM---SKKMKGAD 75
+ G D
Sbjct: 67 AAFHLVVARKNGYD 80
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 50.5 bits (121), Expect = 2e-09
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL----GQRPTETELRDMVN----EVDQDGNG 56
+K K AF L+D + G + EL ++ +L +E + MV+ + D+ +G
Sbjct: 111 EKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDG 170
Query: 57 TIEFNEFLQMMSK 69
I+ +E+ +S
Sbjct: 171 KIDIDEWKDFVSL 183
Score = 50.2 bits (120), Expect = 3e-09
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 4 LDKFKEAFMLFDKD--EDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFN 61
++ E F +DG + E + + + + + D NG IEF
Sbjct: 36 VEALYELFKKLSSSIIDDGLIHKEEFQLAL-FRNRNRRNLFADRIFDVFDVKRNGVIEFG 94
Query: 62 EFLQMMSKKMKGADGEDELKEAF 84
EF++ + A +++K AF
Sbjct: 95 EFVRSLGVFHPSAPVHEKVKFAF 117
Score = 29.7 bits (67), Expect = 0.056
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQR-PTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
F +FD +G + E + P +++ D G IE E +M+
Sbjct: 80 FDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVA 139
Query: 70 KMKGADGED 78
+ ++
Sbjct: 140 LLHESELVL 148
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 47.8 bits (114), Expect = 6e-09
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ + F D ++ + + EL + D D +G + EF
Sbjct: 22 EYYVNQFRSLQPDPSSFISGSVAKNFFTKSKL--SIPELSYIWELSDADCDGALTLPEFC 79
Query: 65 QMM 67
Sbjct: 80 AAF 82
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 49.5 bits (118), Expect = 6e-09
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL-----GQRPTETELRDMVN----EVDQDGN 55
K AF +FD D+DG + +L ++ L R + +E++ +++ E D D +
Sbjct: 129 IKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRD 188
Query: 56 GTIEFNEFLQMMSK 69
GTI +EF ++S+
Sbjct: 189 GTINLSEFQHVISR 202
Score = 47.5 bits (113), Expect = 3e-08
Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
+ + +V ++ + L P + + + + ++ F +FL ++
Sbjct: 62 PQEQRSVESSLRAQVPFEQILS-LPELKANPFKERICRVFST--SPAKDSLSFEDFLDLL 118
Query: 68 SKKMKGADGEDELKEAF 84
S A + + AF
Sbjct: 119 SVFSDTATPDIKSHYAF 135
Score = 28.7 bits (64), Expect = 0.17
Identities = 7/74 (9%), Positives = 23/74 (31%), Gaps = 3/74 (4%)
Query: 11 FMLFDKDE-DGKVTVAELGVVMRSLGQR-PTETELRDMVNEVDQDGNGTIEFNEFLQMMS 68
+F ++ + ++ + + D D +GT+ + +++
Sbjct: 97 CRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLV- 155
Query: 69 KKMKGADGEDELKE 82
+ G + L
Sbjct: 156 NCLTGEGEDTRLSA 169
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 48.6 bits (116), Expect = 9e-09
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRD---------MVNEVDQDGN 55
K AF +FD D+DG + +L ++ L +T L ++ E D D +
Sbjct: 98 IKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRD 157
Query: 56 GTIEFNEFLQMMSK 69
GTI +EF ++S+
Sbjct: 158 GTINLSEFQHVISR 171
Score = 47.8 bits (114), Expect = 2e-08
Identities = 10/83 (12%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFN 61
++ + + + +V ++ + + L P + + + + ++ F
Sbjct: 25 RFCELLPQEQRSVESSLRAQVPFEQI-LSLPELKANPFKERICRVFST--SPAKDSLSFE 81
Query: 62 EFLQMMSKKMKGADGEDELKEAF 84
+FL ++S A + + AF
Sbjct: 82 DFLDLLSVFSDTATPDIKSHYAF 104
Score = 29.7 bits (67), Expect = 0.068
Identities = 7/74 (9%), Positives = 23/74 (31%), Gaps = 3/74 (4%)
Query: 11 FMLFDKDE-DGKVTVAELGVVMRSLGQR-PTETELRDMVNEVDQDGNGTIEFNEFLQMMS 68
+F ++ + ++ + + D D +GT+ + +++
Sbjct: 66 CRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLV- 124
Query: 69 KKMKGADGEDELKE 82
+ G + L
Sbjct: 125 NCLTGEGEDTRLSA 138
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 46.5 bits (111), Expect = 7e-08
Identities = 6/59 (10%), Positives = 14/59 (23%), Gaps = 3/59 (5%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
+ DE + + + + G + V +G + F
Sbjct: 382 TTILNPHIHLMGDESACIAYIRITQYLDAGGI---PRTAQSEETRVWHRRDGKWQIVHF 437
Score = 31.5 bits (72), Expect = 0.017
Identities = 8/82 (9%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+ K L + +G + + + E + ++F+ F
Sbjct: 319 EIIKVTEQLIEAISNGDFE----------SYTKMCDPGMTAFEPEALGNLVEGLDFHRFY 368
Query: 65 --QMMSKKMKGADGEDELKEAF 84
+ S+ K +
Sbjct: 369 FENLWSRNSK--PVHTTILNPH 388
Score = 26.9 bits (60), Expect = 0.80
Identities = 7/53 (13%), Positives = 16/53 (30%)
Query: 31 MRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEA 83
+ S +P T + + + D + I + Q + + E
Sbjct: 372 LWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRV 424
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 46.0 bits (109), Expect = 8e-08
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMV-NEVDQDGNGTIEFNE 62
+ ++ + F+ G +++ E + + ++ + V D +G+GTI+F E
Sbjct: 27 IQEWYKGFL--RDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFRE 84
Query: 63 FLQMMSKKMKGADGEDELKEAF 84
F+ +S +G E +LK AF
Sbjct: 85 FIIALSVTSRG-KLEQKLKWAF 105
Score = 39.8 bits (93), Expect = 1e-05
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL--------GQRPTETELRDMVN----EVDQ 52
K K AF ++D D +G ++ AE+ +++++ E+ ++D
Sbjct: 99 QKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDT 158
Query: 53 DGNGTIEFNEFLQMMSK 69
+ +G + EF++
Sbjct: 159 NRDGKLSLEEFIRGAKS 175
Score = 34.0 bits (78), Expect = 0.002
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70
F FD + DG + E + + + E +L+ + D DGNG I E L+++
Sbjct: 69 FRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAI 128
Query: 71 MKGADGEDELKE 82
K ++ E
Sbjct: 129 YKMVSSVMKMPE 140
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 44.4 bits (105), Expect = 9e-08
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
+++ + + G+V + ++ G L + + D DG G + EF
Sbjct: 11 PVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLI--LGKIWDLADTDGKGVLSKQEFF 68
Query: 65 QMM 67
+
Sbjct: 69 VAL 71
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme
delta1; phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 43.4 bits (101), Expect = 1e-06
Identities = 12/60 (20%), Positives = 22/60 (36%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM 66
DK++D K+ EL ++ L + + R + E D ++E E
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETF 72
Score = 28.0 bits (61), Expect = 0.36
Identities = 3/27 (11%), Positives = 12/27 (44%)
Query: 43 LRDMVNEVDQDGNGTIEFNEFLQMMSK 69
+ + + D++ + + F E + +
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKE 39
Score = 26.0 bits (56), Expect = 1.5
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
++ F D + + E+ + L QR E+ E T+ +
Sbjct: 47 GYARKIFRECDHSQTDSLEDEEIETFYKMLTQRA---EIDRAFEEAAGSAE-TLSVERLV 102
Query: 65 QMMSKKMKGADGEDELKEAF 84
+ + + + L +
Sbjct: 103 TFLQHQQREEEAGPALALSL 122
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 41.8 bits (98), Expect = 3e-06
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQ--------RPTETELRDMVN----EVDQ 52
+K + AF L+D D DG +T E+ ++ ++ Q E V+ +D+
Sbjct: 99 EKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDK 158
Query: 53 DGNGTIEFNEFLQMMSK 69
+ +G + EF +
Sbjct: 159 NADGKLTLQEFQEGSKA 175
Score = 33.7 bits (77), Expect = 0.002
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 15 DKDEDGKVTVAELGVVMRSLGQRPTETELRDMV-NEVDQDGNGTIEFNEFLQMMSKKMKG 73
G++ A + + T+ V N D++ +G IEF+EF+Q +S +G
Sbjct: 36 KDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRG 95
Query: 74 ADGEDELKEAF 84
+++L+ AF
Sbjct: 96 -TLDEKLRWAF 105
Score = 33.3 bits (76), Expect = 0.004
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM--S 68
F +FD+++DG++ +E + + + +LR D D +G I NE L ++
Sbjct: 69 FNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAI 128
Query: 69 KKMKGADGEDELKE 82
+M G E +E
Sbjct: 129 YQMVGNTVELPEEE 142
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 40.7 bits (95), Expect = 4e-06
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 10 AFMLFDKDEDGKVTVAELGVVMRSL--------GQRPTETELRDMV----NEVDQDGNGT 57
F + D D + + EL + + +E EL +++ + D++ +G
Sbjct: 73 YFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGY 132
Query: 58 IEFNEFLQMM 67
I++ EF + +
Sbjct: 133 IDYAEFAKSL 142
Score = 25.3 bits (55), Expect = 2.2
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 51 DQDGNGTIEFNEFLQMMSKKMKGADGEDE 79
D DGN ++ E ++ K E
Sbjct: 78 DYDGNNLLDGLELSTAITHVHKEEGSEQA 106
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 41.4 bits (97), Expect = 4e-06
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL--------GQRPTETELRDMVN----EVDQ 52
+K AF L+D ++DG +T E+ +M+++ E R V ++D+
Sbjct: 138 EKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDK 197
Query: 53 DGNGTIEFNEFLQMMSK 69
+ +G + +EF++ K
Sbjct: 198 NKDGVVTIDEFIESCQK 214
Score = 36.4 bits (84), Expect = 3e-04
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMV-NEVDQDGNGTIEFNE 62
L F ++ G V + + T + N D D NG + F +
Sbjct: 66 LQILYRGFK--NECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFED 123
Query: 63 FLQMMSKKMKGADGEDELKEAF 84
F++ +S ++G +++L AF
Sbjct: 124 FIKGLSILLRG-TVQEKLNWAF 144
Score = 35.2 bits (81), Expect = 9e-04
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMS-- 68
F FD D +G V+ + + L + + +L N D + +G I E L +M
Sbjct: 108 FNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAI 167
Query: 69 KKMKGADGEDELKE 82
M G LKE
Sbjct: 168 YDMMGKCTYPVLKE 181
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 41.4 bits (97), Expect = 5e-06
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL--------GQRPTETELRDMVN----EVDQ 52
+K AF L+D + DG +T E+ ++ S+ E V +D+
Sbjct: 99 EKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDK 158
Query: 53 DGNGTIEFNEFLQMMSK 69
+ +G I +EF +
Sbjct: 159 NEDGYITLDEFREGSKV 175
Score = 39.1 bits (91), Expect = 3e-05
Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMV-NEVDQDGNGTIEFNE 62
+ ++ + F+ G++ + + + + + + + D+D NG I F E
Sbjct: 27 IQQWHKGFL--RDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEE 84
Query: 63 FLQMMSKKMKGADGEDELKEAF 84
F+ ++S +G E++L AF
Sbjct: 85 FITVLSTTSRG-TLEEKLSWAF 105
Score = 37.1 bits (86), Expect = 1e-04
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM--S 68
F +FDKD +G + E V+ + + E +L D + +G I F+E L ++
Sbjct: 69 FTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASV 128
Query: 69 KKMKGADGEDELKE 82
KM G+ E
Sbjct: 129 YKMMGSMVTLNEDE 142
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 41.0 bits (96), Expect = 5e-06
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL--------GQRPTETELRDMVN----EVDQ 52
DK AF L+D D +G ++ E+ ++ ++ E VN +D+
Sbjct: 99 DKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDK 158
Query: 53 DGNGTIEFNEFLQMMSK 69
+ +G + EF + +
Sbjct: 159 NKDGQLTLEEFCEGSKR 175
Score = 36.3 bits (84), Expect = 3e-04
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMV-NEVDQDGNGTIEFNE 62
L ++ + F G + +E + + + + V N D D NG I+F E
Sbjct: 27 LQQWYKGFF--KDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKE 84
Query: 63 FLQMMSKKMKGADGEDELKEAF 84
F+ +S +G + D+L AF
Sbjct: 85 FICALSVTSRG-ELNDKLIWAF 105
Score = 33.6 bits (77), Expect = 0.003
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM--S 68
F +FD D++G + E + + +L D D NG I ++E L+++
Sbjct: 69 FNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAI 128
Query: 69 KKMKGADGEDELKE 82
KM G+ + E
Sbjct: 129 YKMVGSMVKLPEDE 142
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 40.5 bits (94), Expect = 1e-05
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETEL--------RDMVNEVDQDGNG 56
+F++ F+ +D +V+ EL ++ + R + + R MV +D D G
Sbjct: 731 RQFRKLFVQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTG 789
Query: 57 TIEFNEFLQMMSK 69
+ F EF + +
Sbjct: 790 KLGFEEFKYLWNN 802
Score = 34.0 bits (77), Expect = 0.003
Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEF 60
+ + F FD D+ G ++ E+ + + + G + + +V D I+F
Sbjct: 603 WNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFA-DDELIIDF 661
Query: 61 NEFLQMMSK 69
+ F++ + +
Sbjct: 662 DNFVRCLVR 670
Score = 32.4 bits (73), Expect = 0.010
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 31/97 (31%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMV------------- 47
+ K++ + F+ D G + EL + G + ++
Sbjct: 800 WNNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYSDETGNMDFD 859
Query: 48 ----------------NEVDQDGNGTIEFN--EFLQM 66
+D++G G I+ N E+LQ+
Sbjct: 860 NFISCLVRLDAMFRAFRSLDKNGTGQIQVNIQEWLQL 896
Score = 30.1 bits (67), Expect = 0.051
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 44 RDMVNEVDQDGNGTIEFNEFLQMMSK 69
R MVN +D+DGNG + EF + ++
Sbjct: 580 RSMVNLMDRDGNGKLGLVEFNILWNR 605
Score = 27.4 bits (60), Expect = 0.49
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 12 MLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
L D+D +GK+ + E ++ + + + D D +G++ E
Sbjct: 584 NLMDRDGNGKLGLVEFNILWNRI------RNYLTIFRKFDLDKSGSMSAYEM 629
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 39.2 bits (91), Expect = 3e-05
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL--------GQRPTETELRDMVN----EVDQ 52
+K + F L+D ++DG + E+ +++++ E R V+ ++D+
Sbjct: 125 EKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDK 184
Query: 53 DGNGTIEFNEFLQMMSK 69
+ +G + +EFL+ +
Sbjct: 185 NKDGIVTLDEFLESCQE 201
Score = 38.0 bits (88), Expect = 9e-05
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMS-- 68
F FD + G V + + L + +LR N D + +G I E + ++
Sbjct: 95 FNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI 154
Query: 69 KKMKGADGEDELKE 82
M G LKE
Sbjct: 155 YDMMGKYTYPVLKE 168
Score = 30.3 bits (68), Expect = 0.041
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 15 DKDEDGKVTVAELGVVMRSLGQRPTETELRDMV-NEVDQDGNGTIEFNEFLQMMSKKMKG 73
++ G V + + + N D G+++F +F+ +S ++G
Sbjct: 62 NECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRG 121
Query: 74 ADGEDELKEAF 84
++L+ F
Sbjct: 122 -TVHEKLRWTF 131
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 39.3 bits (91), Expect = 3e-05
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSL--------GQRPTETELRDMVN----EVDQ 52
+K K AF L+D ++DG +T E+ +M+S+ E + V ++D+
Sbjct: 165 EKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDR 224
Query: 53 DGNGTIEFNEFLQMMSK 69
+ +G + +EFL+ K
Sbjct: 225 NQDGVVTIDEFLETCQK 241
Score = 35.4 bits (81), Expect = 8e-04
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM--S 68
F FD D +G + + V + L + +L+ N D + +G I E L +M
Sbjct: 135 FNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSI 194
Query: 69 KKMKGADGEDELKE 82
M G L+E
Sbjct: 195 YDMMGRHTYPILRE 208
Score = 30.0 bits (67), Expect = 0.048
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRD-MVNEVDQDGNGTIEFNE 62
L F ++ G V ++ + T + N D DGNG I F +
Sbjct: 93 LQSLYRGFK--NECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFED 150
Query: 63 FLQMMSKKMKGADGEDELKEAF 84
F+ +S ++G ++LK AF
Sbjct: 151 FVVGLSILLRG-TVHEKLKWAF 171
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 37.9 bits (88), Expect = 5e-05
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
K + F G +T + G + L + D + +G ++ EF
Sbjct: 33 AKHDQQFHSLK-PISGFITGDQARNFFFQSGL--PQPVLAQIWALADMNNDGRMDQVEFS 89
Query: 65 QMM---SKKMKGAD 75
M K++G
Sbjct: 90 IAMKLIKLKLQGYQ 103
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 38.0 bits (88), Expect = 8e-05
Identities = 11/79 (13%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMV--------------NEV 50
K + AF L+D D +G ++ E+ ++ ++ + T +++ +
Sbjct: 107 QKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYF 166
Query: 51 DQDGNGTIEFNEFLQMMSK 69
++ + + EF++
Sbjct: 167 GKNDDDKLTEKEFIEGTLA 185
Score = 33.8 bits (77), Expect = 0.003
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRD-MVNEVDQDGNGTIEFNE 62
L + ++F+ G++T + + + D + +GT++F E
Sbjct: 35 LCSWYQSFL--KDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKE 92
Query: 63 FLQMMSKKMKGADGEDELKEAF 84
++ + G +L+ AF
Sbjct: 93 YVIALHMTTAG-KTNQKLEWAF 113
Score = 33.0 bits (75), Expect = 0.005
Identities = 21/73 (28%), Positives = 30/73 (41%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKK 70
F FD + DG + E + + T +L + D DGNGTI NE L+++
Sbjct: 77 FRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAI 136
Query: 71 MKGADGEDELKEA 83
K ED
Sbjct: 137 FKMITPEDVKLLP 149
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 37.6 bits (87), Expect = 9e-05
Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 7/74 (9%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETEL------RDMVNEVDQDGNGTI 58
+ +L ++ ++ R +V ++ NG +
Sbjct: 5 HHHHHHSSGL-VPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRL 63
Query: 59 EFNEFLQMMSKKMK 72
+ EF ++ + +
Sbjct: 64 DQEEFARLWKRLVH 77
Score = 33.8 bits (77), Expect = 0.002
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTET---ELRDMVNEVDQDGNGT 57
K L ++ F G + ++L + + EL +V D G
Sbjct: 72 WKRLVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGR 130
Query: 58 IEFNEFLQMM 67
+ F + +
Sbjct: 131 VSFPSLVCFL 140
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand,
EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB:
2jxc_A 1f8h_A 1ff1_A
Length = 106
Score = 36.7 bits (85), Expect = 1e-04
Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF- 63
K+ F +G ++ ++ V+ + L + D D +G ++ +EF
Sbjct: 15 AKYDAIFDSLS-PVNGFLSGDKVKPVLLNSKL--PVDILGRVWELSDIDHDGMLDRDEFA 71
Query: 64 --LQMMSKKMKGAD 75
+ ++ ++
Sbjct: 72 VAMFLVYCALEKEP 85
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 37.5 bits (87), Expect = 1e-04
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQ--------RPTETELRDMVN----EVDQ 52
+K + F L+D ++DG + E+ +++++ E R V+ ++D+
Sbjct: 92 EKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDK 151
Query: 53 DGNGTIEFNEFLQMMSK 69
+ +G + +EFL+ +
Sbjct: 152 NKDGIVTLDEFLESXQE 168
Score = 37.1 bits (86), Expect = 1e-04
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQM--MS 68
F FD + G V + + L + +LR N D + +G I E + +
Sbjct: 62 FNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI 121
Query: 69 KKMKGADGEDELKE 82
M G LKE
Sbjct: 122 YDMMGKYTYPVLKE 135
Score = 32.9 bits (75), Expect = 0.005
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 15 DKDEDGKVTVAELGVVMRSLGQRPTETELRD-MVNEVDQDGNGTIEFNEFLQMMSKKMKG 73
++ G V + + + N D G+++F +F+ +S ++G
Sbjct: 29 NEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRG 88
Query: 74 ADGEDELKEAF 84
++L+ F
Sbjct: 89 -TVHEKLRWTF 98
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 35.0 bits (80), Expect = 0.001
Identities = 12/77 (15%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 2 KYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRD--------MVNEVDQD 53
+ ++ + F + DK+ DG++T E+ ++ +++++ ++ E+D
Sbjct: 95 GFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPT 154
Query: 54 GNGTIEFNEFLQMMSKK 70
G IE + ++ +
Sbjct: 155 NLGYIEMEDLEALLLQS 171
Score = 26.6 bits (58), Expect = 0.77
Identities = 10/59 (16%), Positives = 22/59 (37%)
Query: 14 FDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSKKMK 72
+T EL L + + LR + VD++ +G + E ++++
Sbjct: 71 KRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSAS 129
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 33.9 bits (77), Expect = 0.002
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMM 67
++D G++ V + SL + E + R + +V G + ++
Sbjct: 138 LNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLL 193
Score = 24.3 bits (52), Expect = 6.1
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 46 MVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
++N D G I F + + A ED+ + F
Sbjct: 137 LLNVYDTGRTGRIRVLSFKTGII-SLCKAHLEDKYRYLF 174
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 32.8 bits (75), Expect = 0.003
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRS-----LGQRPTETELRDMVNEVDQDGNGTI 58
++ F F D G +T +L V+M L + + ++ ++DQ +G +
Sbjct: 8 METMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKV 66
Query: 59 EFNEFLQMMSK 69
F F +++
Sbjct: 67 GFQSFFSLIAG 77
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 32.9 bits (75), Expect = 0.003
Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 15 DKDEDGKVTVAELGVVMRS-----LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
+ + K+ +EL ++ LG+R E + +++ +D + + ++F E+ +S
Sbjct: 22 KEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 81
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 32.9 bits (74), Expect = 0.006
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 44 RDMVNEVDQDGNGTIEFNEFLQMMSK 69
+ MV+ +D+DG+G + EF + +K
Sbjct: 578 KIMVDMLDEDGSGKLGLKEFYILWTK 603
Score = 32.1 bits (72), Expect = 0.010
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 31/97 (31%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMV------------- 47
+ K+++ + D D G + E+ + G + + +V
Sbjct: 601 WTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFD 660
Query: 48 ----------------NEVDQDGNGTIEFN--EFLQM 66
++D + GTI+ + +L
Sbjct: 661 NFVRCLVRLEILFKIFKQLDPENTGTIQLDLISWLSF 697
Score = 28.2 bits (62), Expect = 0.25
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
++ K + D+D GK+ + E ++ + + + + E+D D +GT+ E
Sbjct: 574 IETCKIMVDMLDEDGSGKLGLKEFYILWTKIQK------YQKIYREIDVDRSGTMNSYEM 627
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 31.4 bits (71), Expect = 0.010
Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 15 DKDEDGKVTVAELGVVMRS-----LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
+ + K+ +EL ++ LG+R E + +++ +D + + ++F E+ +S
Sbjct: 34 KEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 93
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 31.3 bits (71), Expect = 0.011
Identities = 7/64 (10%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRS-----LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQ 65
++ K++ + +++ L ++ +D + +G I F+E+
Sbjct: 20 YVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWT 79
Query: 66 MMSK 69
++
Sbjct: 80 LIGG 83
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium
channel, alternative splicing, disease epilepsy,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kbi_A
Length = 129
Score = 31.7 bits (72), Expect = 0.011
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLG-----QRPTETELRDMVNEVDQDGNGTI 58
+ F E + FD D + A+L +L +P + +L M + I
Sbjct: 42 FEMFYEVWEKFDPDATQFIEFAKLSDFADALDPPLLIAKPNKVQLIAMDLPMVSG--DRI 99
Query: 59 EFNEFLQMMSKKMKGADGE-DELKE 82
+ L +K++ G GE D L+
Sbjct: 100 HCLDILFAFTKRVLGESGEMDALRI 124
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 31.0 bits (70), Expect = 0.013
Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 15 DKDEDGKVTVAELGVVMRS-----LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
+ + K+ +EL ++ LG+R E + +++ +D + + ++F E+ +S
Sbjct: 25 KEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSS 84
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 30.9 bits (70), Expect = 0.014
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 16 KDEDGKVTVAELGVVMRS-LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
K V +L ++ + Q + E+D + +G + F EFL ++ K
Sbjct: 23 KGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIK 77
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 30.0 bits (68), Expect = 0.021
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 9 EAFMLFDKDED--GKVTVAELGVVMRSLGQRPT--ETELRDMVNEVDQDGNGTIEFNEFL 64
F + E +++ EL ++++ L D+ E+D++G+G + F EF
Sbjct: 11 SIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQ 70
Query: 65 QMMSK 69
++ K
Sbjct: 71 VLVKK 75
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 30.3 bits (68), Expect = 0.025
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 16/79 (20%)
Query: 8 KEAFMLFDKDEDGKVTVAELGVVMRSLGQ------------RPTETELRDMV----NEVD 51
K F+L D + DG + EL + + R E E M VD
Sbjct: 23 KTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVD 82
Query: 52 QDGNGTIEFNEFLQMMSKK 70
+ + + EFL +K
Sbjct: 83 TNQDRLVTLEEFLASTQRK 101
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 30.7 bits (69), Expect = 0.029
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 5 DKFKEAFMLFDKDEDGKVTVAEL-GVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEF 63
+ E F +GK+T A +++S + T L + D D +G ++ EF
Sbjct: 51 PTYDEIFYTLS-PVNGKITGANAKKEMVKS---KLPNTVLGKIWKLADVDKDGLLDDEEF 106
Query: 64 ---LQMMSKKMKGAD 75
++ K++G +
Sbjct: 107 ALANHLIKVKLEGHE 121
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 29.8 bits (67), Expect = 0.031
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 32 RSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
L + + ++ E+D++G+G ++F EF+ +++
Sbjct: 43 SFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 30.7 bits (68), Expect = 0.036
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 11 FMLFDKDE-DGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFL 64
F D+ DG ++ EL + L P E D D + I +E+
Sbjct: 161 FGQLDQHPIDGYLSHTELAPLRAPLI--PMEHCTTRFFETCDLDNDKYIALDEWA 213
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 29.9 bits (67), Expect = 0.040
Identities = 8/56 (14%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 14 FDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
++ E ++ +L ++ + E + ++ ++D + + + F EF+ +M++
Sbjct: 31 LNQGEFKELVRKDLQNFLK--KENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMAR 84
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 29.4 bits (66), Expect = 0.050
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 15 DKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
DK + + + ++ T L D+ + D++ + I+F+EFL ++
Sbjct: 27 DKPSLLTMMKENFPNFLSACDKKGTNY-LADVFEKKDKNEDKKIDFSEFLSLLGD 80
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 29.4 bits (66), Expect = 0.051
Identities = 7/60 (11%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 15 DKDEDGKVTVAELGVVMRS-----LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
K ++ EL ++ + + + ++ +D + + ++F EF+ +++
Sbjct: 24 RKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAI 83
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 29.4 bits (66), Expect = 0.057
Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 15 DKDEDGKVTVAELGVVMRS-----LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
+ +T EL V+M L + + ++ ++D +G+ ++F+EF+ ++
Sbjct: 21 SEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAA 80
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 29.4 bits (66), Expect = 0.059
Identities = 4/35 (11%), Positives = 17/35 (48%)
Query: 35 GQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
E + ++ +D + + ++F E+++ ++
Sbjct: 47 PTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLAC 81
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 29.0 bits (65), Expect = 0.066
Identities = 6/35 (17%), Positives = 20/35 (57%)
Query: 35 GQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
G++ E L+ ++ +D++ + ++F E+ ++
Sbjct: 48 GEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLAL 82
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 29.0 bits (65), Expect = 0.069
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 15 DKDEDGKVTVAELGVVMRS-----LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
+ K++ E + M + + L M+ ++D D +G ++F EFL ++
Sbjct: 25 RDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGG 84
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 29.2 bits (65), Expect = 0.10
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 4 LDKFKEAFMLFDKDEDGKVTVAELGVVMRSLG-----QRPTETELRDMVNEVDQDGNGTI 58
D F E + FD + + + L +L +P + L +M ++ I
Sbjct: 19 FDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAKPNQISLINM--DLPMVSGDRI 76
Query: 59 EFNEFLQMMSKKMKGADGEDE 79
+ L +K++ G GE +
Sbjct: 77 HCMDILFAFTKRVLGESGEMD 97
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 28.6 bits (64), Expect = 0.11
Identities = 7/36 (19%), Positives = 21/36 (58%)
Query: 34 LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
L + + ++N++D + + ++FNEF+ +++
Sbjct: 46 LMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAA 81
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 28.2 bits (63), Expect = 0.14
Identities = 8/57 (14%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 15 DKDEDGKVTVAELGVVMRS--LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
+ ++ EL +++ E+ + D++ +D++ + I+F E+ ++
Sbjct: 22 REGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTM 78
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 28.2 bits (63), Expect = 0.17
Identities = 5/30 (16%), Positives = 17/30 (56%)
Query: 40 ETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
L + + +D + + ++FNE+ +++ +
Sbjct: 61 VGSLDEKMKSLDVNQDSELKFNEYWRLIGE 90
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 27.8 bits (62), Expect = 0.18
Identities = 7/57 (12%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 16 KDEDGKVTVAELGVVMRS---LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
+ + ++ EL +++ +G + + E+ ++ ++D++ + + F E++ +
Sbjct: 23 EGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGA 79
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 27.5 bits (61), Expect = 0.25
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 34 LGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
L + + + ++ +D +G+G +F EF+ ++
Sbjct: 45 LEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAM 80
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Length = 534
Score = 26.3 bits (59), Expect = 1.3
Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 15 DKDEDGKVTVAELGVVMRSLGQRPTETELRDM 46
+ DE G+ + ++ + ++ EL+D+
Sbjct: 394 NSDEVGEDELKNAKLMS---QREASKEELKDL 422
>4an8_A CSE1; immune system, crispr, cascade, CASA; 2.30A {Thermus
thermophilus} PDB: 4f3e_A
Length = 506
Score = 25.8 bits (56), Expect = 1.7
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 2 KYLDKFKEAFMLFDKD 17
YL++F++ F LF +
Sbjct: 93 DYLNRFRDRFFLFHPE 108
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM
barrel, cellulose degradation, glycosidase, hydrolase;
HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A*
3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A*
1j01_A* 2exo_A 2xyl_A 2his_A*
Length = 315
Score = 25.7 bits (57), Expect = 1.7
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 45 DMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
D+VNE DG G + + F Q + G ++ AF
Sbjct: 123 DVVNEAFADGGGRRQDSAFQQKL--------GNGYIETAF 154
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 25.8 bits (56), Expect = 1.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 43 LRDMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDE 79
L+ + ++D D +G IE E + + + MK D ++
Sbjct: 17 LQTIHKQMDDDKDGGIEVEESDEFIREDMKYKDATNK 53
Score = 23.8 bits (51), Expect = 7.0
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 11 FMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVNEVDQ 52
D D+DG + V E +R + T ++ D+
Sbjct: 21 HKQMDDDKDGGIEVEESDEFIREDMKYKDATNKHSHLHREDK 62
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase,
family F/10 of glycosyl hydrolases, glycosyltransferase;
1.40A {Clostridium thermocellum} SCOP: c.1.8.3
Length = 347
Score = 25.5 bits (56), Expect = 2.0
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 45 DMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
D+ NE D + + + ++ G+D L AF
Sbjct: 151 DVANECMDDSGNGLRSSIWRNVI--------GQDYLDYAF 182
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 24.9 bits (55), Expect = 3.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 1 MKYLDKFKEAFMLFDKDEDGKVTV 24
K DK++EAF L + GKV
Sbjct: 322 YKGFDKYEEAFELMRAGKTGKVVF 345
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 25.2 bits (55), Expect = 3.6
Identities = 5/41 (12%), Positives = 18/41 (43%)
Query: 29 VVMRSLGQRPTETELRDMVNEVDQDGNGTIEFNEFLQMMSK 69
VV+ + G + ++++ ++ + + E + S+
Sbjct: 433 VVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSE 473
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 24.5 bits (54), Expect = 4.2
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 4 LDKFKEAFMLFDKDEDGKV 22
LD+ + + FDK K
Sbjct: 369 LDQAPDGYAKFDKGSPAKF 387
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan
degradation, isofagomine, hydrolase; 0.98A {Streptomyces
lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A
1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A*
2g4f_A 1v6y_A
Length = 313
Score = 24.6 bits (54), Expect = 4.6
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 45 DMVNEVDQDGNGTIEFNEFLQMMSKKMKGADGEDELKEAF 84
D+VNE DG+ + LQ G D ++ AF
Sbjct: 124 DVVNEAFADGSSGARRDSNLQRS--------GNDWIEVAF 155
>3iyn_N Protein IIIA, peripentonal hexon-associated protein; cryoem, 3D
reconstruction, FULL-ATOM model interaction network,
capsid protein, hexon protein; 3.60A {Human adenovirus
5}
Length = 585
Score = 24.4 bits (52), Expect = 5.4
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 7 FKEAFMLFDKDEDGKVTVAELGVVMRSLGQRPTETELRDMVN 48
++EA DE T E+ V R+LGQ T L +N
Sbjct: 261 YREAIGQAHVDEH---TFQEITSVSRALGQEDTG-SLEATLN 298
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA,
ketopantoate reductase, rossman fold, monomer, APO,
oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7
c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Length = 291
Score = 24.1 bits (53), Expect = 6.8
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 24 VAELGVVMRSLGQRPTETELRDMVNEVDQ 52
E+ V+ G + +LRD V +V
Sbjct: 208 CEEVAAVIEREGHHTSAEDLRDYVMQVID 236
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 24.1 bits (53), Expect = 7.8
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 4 LDKFKEAFMLFDKDEDGKV 22
L+K EAF F K K+
Sbjct: 327 LEKALEAFETFKKGLGLKI 345
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.364
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,358,616
Number of extensions: 71456
Number of successful extensions: 928
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 411
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.3 bits)