Query psy15708
Match_columns 87
No_of_seqs 141 out of 1232
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 19:26:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05022 S-100A13 S-100A13: S-1 99.4 3.1E-13 6.6E-18 78.3 4.5 60 3-63 12-74 (89)
2 PF13499 EF-hand_7: EF-hand do 99.4 8.6E-13 1.9E-17 71.6 5.5 56 3-59 4-63 (66)
3 cd05027 S-100B S-100B: S-100B 99.4 1.1E-12 2.4E-17 75.7 5.5 58 3-61 12-76 (88)
4 KOG0027|consensus 99.4 1.4E-12 2.9E-17 81.5 6.0 56 3-59 89-144 (151)
5 COG5126 FRQ1 Ca2+-binding prot 99.3 2.5E-12 5.4E-17 81.4 5.8 60 3-63 96-155 (160)
6 KOG0027|consensus 99.3 1.6E-11 3.5E-16 76.6 6.0 63 3-66 12-74 (151)
7 cd05029 S-100A6 S-100A6: S-100 99.3 1.6E-11 3.4E-16 70.9 5.4 56 3-59 14-74 (88)
8 cd05031 S-100A10_like S-100A10 99.2 2.1E-11 4.5E-16 70.8 5.1 61 3-64 12-79 (94)
9 PF13833 EF-hand_8: EF-hand do 99.2 3.2E-11 6.9E-16 63.2 5.3 47 12-59 1-48 (54)
10 cd00052 EH Eps15 homology doma 99.2 4E-11 8.7E-16 64.7 5.7 56 3-61 3-58 (67)
11 cd05025 S-100A1 S-100A1: S-100 99.2 4.2E-11 9E-16 69.2 5.5 59 3-62 13-78 (92)
12 PF14658 EF-hand_9: EF-hand do 99.2 8.6E-11 1.9E-15 64.3 6.3 53 3-55 2-56 (66)
13 cd05026 S-100Z S-100Z: S-100Z 99.2 4.7E-11 1E-15 69.4 5.4 59 3-62 14-79 (93)
14 smart00027 EH Eps15 homology d 99.1 1.2E-10 2.7E-15 67.7 5.6 59 3-64 14-72 (96)
15 cd00051 EFh EF-hand, calcium b 99.1 7.5E-10 1.6E-14 57.6 6.3 56 3-59 4-59 (63)
16 cd00213 S-100 S-100: S-100 dom 99.1 2.7E-10 5.8E-15 65.1 4.9 60 3-63 12-78 (88)
17 COG5126 FRQ1 Ca2+-binding prot 99.1 3.2E-10 7E-15 71.8 5.7 62 3-66 24-85 (160)
18 KOG0028|consensus 99.0 8.5E-10 1.8E-14 69.6 5.9 53 3-55 110-162 (172)
19 PTZ00184 calmodulin; Provision 99.0 1E-09 2.3E-14 66.8 6.1 53 3-55 88-140 (149)
20 cd05023 S-100A11 S-100A11: S-1 99.0 1.4E-09 3.1E-14 62.8 5.4 57 3-60 13-76 (89)
21 PTZ00183 centrin; Provisional 99.0 2.5E-09 5.4E-14 66.0 6.2 58 3-61 94-151 (158)
22 PTZ00183 centrin; Provisional 98.9 5E-09 1.1E-13 64.6 6.3 61 3-64 21-81 (158)
23 KOG0028|consensus 98.9 3.7E-09 8.1E-14 66.8 5.4 61 3-64 37-97 (172)
24 cd00252 SPARC_EC SPARC_EC; ext 98.9 4.8E-09 1E-13 63.4 5.3 55 3-62 52-106 (116)
25 PTZ00184 calmodulin; Provision 98.9 8.2E-09 1.8E-13 62.8 5.8 62 3-65 15-76 (149)
26 KOG0030|consensus 98.9 5E-09 1.1E-13 64.9 4.6 58 3-62 92-149 (152)
27 cd05030 calgranulins Calgranul 98.8 6.1E-09 1.3E-13 59.9 4.3 59 3-62 12-77 (88)
28 KOG0037|consensus 98.8 1.5E-08 3.2E-13 66.7 6.1 59 3-62 128-186 (221)
29 KOG0034|consensus 98.8 2.1E-08 4.6E-13 65.0 6.0 60 4-64 109-175 (187)
30 KOG0031|consensus 98.8 1.8E-08 3.9E-13 63.4 5.4 57 3-64 36-92 (171)
31 KOG0031|consensus 98.8 2.6E-08 5.7E-13 62.7 5.8 60 3-63 105-164 (171)
32 PF14788 EF-hand_10: EF hand; 98.8 4.8E-08 1E-12 50.9 5.7 44 15-59 1-44 (51)
33 KOG0041|consensus 98.7 1.9E-08 4.2E-13 65.8 4.7 57 3-60 103-159 (244)
34 KOG0030|consensus 98.7 1.7E-08 3.7E-13 62.5 3.5 61 3-64 15-77 (152)
35 KOG0036|consensus 98.5 3.5E-07 7.6E-12 65.2 5.5 56 4-60 87-142 (463)
36 PLN02964 phosphatidylserine de 98.4 5.5E-07 1.2E-11 67.5 5.9 60 4-64 184-243 (644)
37 KOG0044|consensus 98.4 8.5E-07 1.8E-11 57.8 5.5 60 4-64 105-175 (193)
38 PF00036 EF-hand_1: EF hand; 98.3 6.4E-07 1.4E-11 41.5 2.9 23 36-59 1-23 (29)
39 KOG0377|consensus 98.3 1.2E-06 2.5E-11 63.4 5.3 62 3-65 551-616 (631)
40 cd05024 S-100A10 S-100A10: A s 98.3 3.6E-06 7.8E-11 48.9 5.9 57 4-62 13-74 (91)
41 KOG0044|consensus 98.3 8.5E-07 1.8E-11 57.8 3.6 61 3-64 68-128 (193)
42 PF00036 EF-hand_1: EF hand; 98.3 6.4E-07 1.4E-11 41.5 1.9 26 3-28 4-29 (29)
43 KOG0038|consensus 98.3 3.4E-06 7.3E-11 53.1 5.6 60 4-64 113-177 (189)
44 PLN02964 phosphatidylserine de 98.2 2.5E-06 5.3E-11 64.1 5.6 57 3-64 147-207 (644)
45 PF13405 EF-hand_6: EF-hand do 98.2 1.7E-06 3.6E-11 40.4 2.1 27 3-29 4-31 (31)
46 PF12763 EF-hand_4: Cytoskelet 98.1 9.8E-06 2.1E-10 48.1 5.8 57 3-63 14-70 (104)
47 KOG0037|consensus 98.1 6.1E-06 1.3E-10 54.5 4.9 61 3-64 61-122 (221)
48 KOG0036|consensus 98.0 2E-05 4.4E-10 56.4 5.4 61 3-64 18-79 (463)
49 PRK12309 transaldolase/EF-hand 97.8 3.3E-05 7.2E-10 55.2 4.4 45 3-61 338-382 (391)
50 PF10591 SPARC_Ca_bdg: Secrete 97.8 3.8E-06 8.3E-11 50.5 -0.5 52 4-58 59-110 (113)
51 PF13202 EF-hand_5: EF hand; P 97.7 2.9E-05 6.3E-10 34.6 1.6 21 4-24 4-24 (25)
52 PF13202 EF-hand_5: EF hand; P 97.7 8.3E-05 1.8E-09 33.1 3.0 22 37-59 1-22 (25)
53 KOG4223|consensus 97.6 4.9E-05 1.1E-09 52.8 2.2 54 5-59 247-300 (325)
54 PF13405 EF-hand_6: EF-hand do 97.4 0.0003 6.6E-09 32.5 3.1 25 36-61 1-25 (31)
55 KOG0046|consensus 97.4 0.00039 8.5E-09 51.3 4.8 62 3-66 23-87 (627)
56 KOG0034|consensus 97.3 0.00091 2E-08 43.5 5.9 64 3-71 37-102 (187)
57 KOG4223|consensus 97.3 0.0002 4.2E-09 49.9 3.0 63 2-65 166-229 (325)
58 KOG4065|consensus 97.3 0.0011 2.3E-08 40.4 5.7 58 3-61 71-142 (144)
59 KOG0040|consensus 97.1 0.00084 1.8E-08 54.7 4.6 55 4-59 2258-2319(2399)
60 smart00054 EFh EF-hand, calciu 96.7 0.002 4.3E-08 27.6 2.5 23 36-59 1-23 (29)
61 smart00054 EFh EF-hand, calciu 96.5 0.0027 5.8E-08 27.2 2.1 25 3-27 4-28 (29)
62 KOG2243|consensus 96.5 0.0052 1.1E-07 50.5 4.8 63 2-66 4060-4122(5019)
63 KOG2643|consensus 96.5 0.0047 1E-07 44.9 4.2 55 4-59 238-309 (489)
64 KOG0042|consensus 96.3 0.0048 1E-07 46.2 3.3 56 3-59 597-652 (680)
65 KOG1955|consensus 96.3 0.0081 1.8E-07 44.6 4.4 59 3-64 235-293 (737)
66 PF13833 EF-hand_8: EF-hand do 96.2 0.0045 9.8E-08 31.7 2.2 25 3-27 29-53 (54)
67 KOG4251|consensus 95.7 0.0046 9.9E-08 42.3 1.1 60 4-64 106-168 (362)
68 KOG0377|consensus 95.6 0.032 7E-07 41.0 5.0 73 3-76 468-587 (631)
69 PF13499 EF-hand_7: EF-hand do 95.4 0.027 5.8E-07 29.8 3.3 29 37-66 2-30 (66)
70 PF09279 EF-hand_like: Phospho 95.1 0.046 1E-06 30.5 3.7 58 4-63 5-68 (83)
71 KOG2643|consensus 94.9 0.007 1.5E-07 44.0 0.0 53 13-66 402-455 (489)
72 KOG1029|consensus 94.6 0.037 8.1E-07 43.1 3.0 59 3-64 199-257 (1118)
73 KOG4578|consensus 94.4 0.039 8.5E-07 39.1 2.6 59 4-65 338-399 (421)
74 KOG0169|consensus 93.7 0.1 2.2E-06 40.3 3.9 60 3-63 140-199 (746)
75 PF05517 p25-alpha: p25-alpha 93.7 0.46 9.9E-06 29.9 6.3 59 5-64 8-69 (154)
76 KOG2562|consensus 93.5 0.16 3.4E-06 37.4 4.3 56 5-64 284-343 (493)
77 KOG3555|consensus 93.4 0.21 4.5E-06 35.8 4.8 64 5-73 256-319 (434)
78 KOG3866|consensus 92.7 0.23 4.9E-06 35.2 4.1 61 3-64 248-324 (442)
79 cd00051 EFh EF-hand, calcium b 92.3 0.14 2.9E-06 25.5 2.1 28 37-65 2-29 (63)
80 cd05026 S-100Z S-100Z: S-100Z 92.2 0.14 3.1E-06 29.3 2.3 26 4-29 58-83 (93)
81 cd05022 S-100A13 S-100A13: S-1 92.2 0.15 3.2E-06 29.3 2.3 25 4-28 52-76 (89)
82 KOG4666|consensus 92.2 0.13 2.9E-06 36.5 2.5 54 4-59 301-354 (412)
83 KOG4251|consensus 92.1 0.12 2.7E-06 35.5 2.2 63 7-73 289-351 (362)
84 PF14788 EF-hand_10: EF hand; 92.0 0.11 2.3E-06 27.1 1.4 27 2-28 24-50 (51)
85 cd00252 SPARC_EC SPARC_EC; ext 91.5 0.15 3.2E-06 30.7 1.9 22 4-25 85-106 (116)
86 smart00027 EH Eps15 homology d 91.2 0.43 9.3E-06 27.2 3.6 30 35-65 10-39 (96)
87 cd05023 S-100A11 S-100A11: S-1 91.1 0.23 5E-06 28.4 2.4 25 4-28 57-81 (89)
88 cd05031 S-100A10_like S-100A10 91.1 0.089 1.9E-06 30.1 0.6 28 4-31 56-83 (94)
89 cd05029 S-100A6 S-100A6: S-100 90.2 0.3 6.6E-06 27.8 2.3 25 4-28 56-80 (88)
90 cd05030 calgranulins Calgranul 89.5 0.38 8.2E-06 27.3 2.4 26 3-28 55-80 (88)
91 cd00052 EH Eps15 homology doma 88.6 0.51 1.1E-05 24.5 2.3 27 38-65 2-28 (67)
92 cd05024 S-100A10 S-100A10: A s 88.2 0.49 1.1E-05 27.4 2.2 27 3-29 52-78 (91)
93 cd05025 S-100A1 S-100A1: S-100 88.0 0.52 1.1E-05 26.7 2.3 26 3-28 56-81 (92)
94 cd00213 S-100 S-100: S-100 dom 87.6 0.77 1.7E-05 25.6 2.8 29 35-64 8-38 (88)
95 KOG2562|consensus 86.6 2 4.4E-05 31.8 5.0 57 4-61 356-421 (493)
96 PRK12309 transaldolase/EF-hand 85.9 0.68 1.5E-05 33.5 2.3 25 3-27 361-385 (391)
97 PF03672 UPF0154: Uncharacteri 85.8 2.6 5.7E-05 22.9 4.0 32 14-45 30-61 (64)
98 cd05027 S-100B S-100B: S-100B 85.7 1.3 2.9E-05 25.1 3.1 29 35-64 8-38 (88)
99 PRK00523 hypothetical protein; 85.4 2.6 5.7E-05 23.4 4.0 31 14-44 38-68 (72)
100 PF05042 Caleosin: Caleosin re 85.2 0.87 1.9E-05 29.4 2.4 63 3-66 11-126 (174)
101 KOG0998|consensus 85.1 0.29 6.2E-06 38.6 0.1 59 4-65 288-346 (847)
102 PF08976 DUF1880: Domain of un 84.9 0.8 1.7E-05 27.8 1.9 33 31-64 3-35 (118)
103 KOG4666|consensus 83.9 2.7 5.8E-05 30.1 4.4 53 3-55 263-316 (412)
104 PRK01844 hypothetical protein; 82.6 4.1 8.8E-05 22.6 4.0 30 15-44 38-67 (72)
105 COG3763 Uncharacterized protei 81.5 5.3 0.00011 22.1 4.2 33 13-45 36-68 (71)
106 PF08461 HTH_12: Ribonuclease 81.3 2.9 6.2E-05 22.5 3.1 37 12-48 10-46 (66)
107 PF08726 EFhand_Ca_insen: Ca2+ 79.5 0.29 6.3E-06 27.0 -1.2 48 3-59 10-64 (69)
108 KOG0038|consensus 79.4 1.6 3.5E-05 27.8 1.9 55 7-62 79-134 (189)
109 PF07308 DUF1456: Protein of u 78.7 7.4 0.00016 21.2 4.2 30 16-45 14-43 (68)
110 PF01885 PTS_2-RNA: RNA 2'-pho 77.5 5.7 0.00012 25.8 4.1 37 9-45 26-62 (186)
111 PF00404 Dockerin_1: Dockerin 77.1 4.6 0.0001 17.0 2.5 16 9-24 1-16 (21)
112 KOG0751|consensus 76.7 9.5 0.00021 29.0 5.5 56 8-66 83-138 (694)
113 KOG0035|consensus 75.4 5 0.00011 32.1 3.9 57 3-60 751-812 (890)
114 TIGR01639 P_fal_TIGR01639 Plas 74.9 10 0.00022 20.1 4.0 31 14-44 8-38 (61)
115 PF12763 EF-hand_4: Cytoskelet 74.2 2.5 5.4E-05 24.9 1.7 25 3-27 47-71 (104)
116 KOG0751|consensus 74.0 3.5 7.6E-05 31.2 2.7 54 2-55 182-236 (694)
117 PRK00819 RNA 2'-phosphotransfe 70.2 12 0.00027 24.2 4.3 35 9-43 27-61 (179)
118 KOG1029|consensus 69.8 11 0.00024 30.2 4.6 58 4-64 18-77 (1118)
119 PTZ00373 60S Acidic ribosomal 69.8 19 0.00042 21.6 4.8 43 12-60 16-58 (112)
120 KOG4347|consensus 68.5 6.7 0.00014 30.3 3.2 51 4-55 560-610 (671)
121 cd07313 terB_like_2 tellurium 67.5 7.4 0.00016 22.1 2.7 53 12-65 12-66 (104)
122 PF07879 PHB_acc_N: PHB/PHA ac 67.2 16 0.00034 19.9 3.6 22 6-27 10-31 (64)
123 KOG1707|consensus 65.1 5.7 0.00012 30.4 2.2 57 3-64 319-377 (625)
124 KOG2871|consensus 65.1 8 0.00017 28.2 2.9 52 4-55 314-366 (449)
125 PF11116 DUF2624: Protein of u 62.5 27 0.00059 20.0 4.5 34 14-47 13-46 (85)
126 PLN00138 large subunit ribosom 61.5 33 0.00072 20.6 4.7 44 12-61 14-57 (113)
127 KOG3449|consensus 61.4 23 0.0005 21.3 3.9 51 8-64 10-60 (112)
128 PF14513 DAG_kinase_N: Diacylg 61.1 11 0.00024 23.4 2.7 43 14-59 6-55 (138)
129 PF01316 Arg_repressor: Argini 60.5 26 0.00056 19.2 3.9 40 16-55 20-63 (70)
130 TIGR00135 gatC glutamyl-tRNA(G 60.4 27 0.00059 19.7 4.1 28 16-43 1-28 (93)
131 PLN02952 phosphoinositide phos 60.3 38 0.00083 26.1 5.8 51 12-64 13-65 (599)
132 KOG1954|consensus 60.2 14 0.00031 27.3 3.4 47 12-61 456-502 (532)
133 PF03979 Sigma70_r1_1: Sigma-7 57.7 15 0.00032 20.5 2.6 34 12-47 18-51 (82)
134 KOG0041|consensus 57.6 13 0.00029 25.0 2.7 29 35-64 99-127 (244)
135 PRK00034 gatC aspartyl/glutamy 57.3 34 0.00073 19.3 4.2 29 15-43 2-30 (95)
136 cd05833 Ribosomal_P2 Ribosomal 56.9 40 0.00086 20.1 4.8 48 11-64 13-60 (109)
137 PRK14981 DNA-directed RNA poly 55.6 32 0.00069 20.4 4.0 28 17-44 80-107 (112)
138 TIGR01848 PHA_reg_PhaR polyhyd 55.3 30 0.00064 20.7 3.7 47 6-52 10-66 (107)
139 PF08414 NADPH_Ox: Respiratory 55.2 36 0.00079 20.1 4.0 51 3-59 34-87 (100)
140 PF09336 Vps4_C: Vps4 C termin 54.7 23 0.0005 18.8 3.0 27 15-41 29-55 (62)
141 TIGR01529 argR_whole arginine 53.9 36 0.00078 21.1 4.2 44 12-55 13-60 (146)
142 PF07128 DUF1380: Protein of u 53.7 28 0.0006 21.8 3.6 31 16-46 27-57 (139)
143 PRK00441 argR arginine repress 52.8 36 0.00078 21.3 4.0 44 12-55 15-62 (149)
144 KOG0040|consensus 52.2 32 0.0007 29.9 4.5 50 5-55 2302-2353(2399)
145 COG1460 Uncharacterized protei 51.1 29 0.00062 21.0 3.2 28 17-44 81-108 (114)
146 PF09068 EF-hand_2: EF hand; 50.6 13 0.00028 22.6 1.8 24 5-28 103-126 (127)
147 cd04411 Ribosomal_P1_P2_L12p R 50.6 51 0.0011 19.5 5.8 43 16-64 17-59 (105)
148 PF10982 DUF2789: Protein of u 47.8 40 0.00086 18.8 3.3 35 18-52 5-39 (74)
149 TIGR02675 tape_meas_nterm tape 47.0 36 0.00078 18.6 3.1 16 12-27 27-42 (75)
150 PF13829 DUF4191: Domain of un 43.8 66 0.0014 21.7 4.4 36 10-45 162-197 (224)
151 PRK03341 arginine repressor; P 43.7 51 0.0011 21.1 3.8 44 12-55 26-74 (168)
152 KOG2301|consensus 43.5 8.2 0.00018 32.9 0.1 69 4-74 1422-1494(1592)
153 PF02037 SAP: SAP domain; Int 43.1 34 0.00073 15.8 2.2 19 15-33 3-21 (35)
154 smart00513 SAP Putative DNA-bi 42.6 37 0.0008 15.5 2.5 19 15-33 3-21 (35)
155 KOG4004|consensus 42.6 12 0.00026 25.1 0.8 53 4-59 192-245 (259)
156 COG0721 GatC Asp-tRNAAsn/Glu-t 41.7 70 0.0015 18.5 4.0 29 15-43 2-30 (96)
157 PF12486 DUF3702: ImpA domain 39.8 61 0.0013 20.4 3.6 33 4-36 74-110 (148)
158 PF05099 TerB: Tellurite resis 39.5 11 0.00023 22.5 0.2 52 12-64 36-89 (140)
159 PF02334 RTP: Replication term 39.4 32 0.0007 20.8 2.2 35 13-47 33-67 (122)
160 PF05042 Caleosin: Caleosin re 39.3 1.1E+02 0.0023 19.9 5.2 32 12-43 89-124 (174)
161 PF12174 RST: RCD1-SRO-TAF4 (R 38.1 26 0.00057 19.2 1.6 44 16-63 9-52 (70)
162 PF03874 RNA_pol_Rpb4: RNA pol 37.2 51 0.0011 19.2 2.9 8 35-42 88-95 (117)
163 PF09682 Holin_LLH: Phage holi 37.2 88 0.0019 18.3 4.0 24 20-43 76-99 (108)
164 PRK06402 rpl12p 50S ribosomal 37.1 92 0.002 18.5 4.8 43 15-63 16-58 (106)
165 PF10281 Ish1: Putative stress 36.7 51 0.0011 15.4 2.5 17 17-33 5-21 (38)
166 COG2058 RPP1A Ribosomal protei 36.6 96 0.0021 18.6 4.2 45 15-65 16-60 (109)
167 TIGR03573 WbuX N-acetyl sugar 36.3 1.1E+02 0.0023 21.7 4.8 33 13-45 300-332 (343)
168 PF07862 Nif11: Nitrogen fixat 36.2 58 0.0013 16.0 2.8 21 17-37 28-48 (49)
169 KOG3341|consensus 36.0 1E+02 0.0022 21.0 4.3 40 12-51 113-156 (249)
170 KOG0998|consensus 35.9 22 0.00049 28.4 1.4 61 2-65 14-74 (847)
171 PF09494 Slx4: Slx4 endonuclea 34.5 75 0.0016 16.7 3.6 29 15-43 24-56 (64)
172 KOG0506|consensus 34.2 62 0.0013 24.7 3.4 59 5-64 92-158 (622)
173 cd05831 Ribosomal_P1 Ribosomal 33.7 1E+02 0.0022 18.1 4.7 44 13-62 15-58 (103)
174 KOG4347|consensus 33.4 62 0.0013 25.3 3.3 48 16-64 535-583 (671)
175 COG4103 Uncharacterized protei 33.1 79 0.0017 20.0 3.3 53 12-65 41-95 (148)
176 PRK04280 arginine repressor; P 32.9 78 0.0017 19.8 3.3 39 17-55 20-62 (148)
177 PF09107 SelB-wing_3: Elongati 32.9 73 0.0016 16.1 3.1 31 12-47 7-37 (50)
178 cd07894 Adenylation_RNA_ligase 32.4 1.1E+02 0.0025 21.7 4.4 44 5-48 131-184 (342)
179 PF14848 HU-DNA_bdg: DNA-bindi 32.3 1.1E+02 0.0025 18.2 4.3 33 12-44 25-57 (124)
180 PF01498 HTH_Tnp_Tc3_2: Transp 32.2 73 0.0016 16.7 2.8 33 12-44 10-42 (72)
181 PF07499 RuvA_C: RuvA, C-termi 32.0 71 0.0015 15.7 3.3 33 19-55 4-36 (47)
182 PLN02222 phosphoinositide phos 31.9 1.4E+02 0.0031 23.1 5.0 51 13-64 37-90 (581)
183 PF13623 SurA_N_2: SurA N-term 31.8 97 0.0021 19.2 3.6 21 21-41 95-115 (145)
184 PTZ00315 2'-phosphotransferase 31.6 1.1E+02 0.0024 23.6 4.4 35 9-43 399-433 (582)
185 PLN02375 molybderin biosynthes 31.5 52 0.0011 22.7 2.5 46 35-82 45-91 (270)
186 KOG2278|consensus 31.4 59 0.0013 21.4 2.6 38 8-45 27-64 (207)
187 PF11848 DUF3368: Domain of un 31.3 75 0.0016 15.7 3.7 33 12-44 14-47 (48)
188 PF02761 Cbl_N2: CBL proto-onc 30.7 1.1E+02 0.0024 17.5 5.7 45 14-59 21-65 (85)
189 PF12995 DUF3879: Domain of un 30.6 1.5E+02 0.0033 19.3 4.3 34 18-51 4-37 (186)
190 COG1859 KptA RNA:NAD 2'-phosph 30.3 1.2E+02 0.0025 20.4 3.9 36 10-45 54-89 (211)
191 PLN02228 Phosphoinositide phos 30.3 2E+02 0.0044 22.2 5.6 51 13-64 36-92 (567)
192 smart00657 RPOL4c DNA-directed 30.2 1.2E+02 0.0025 18.0 3.6 23 20-42 87-109 (118)
193 PF09373 PMBR: Pseudomurein-bi 30.1 65 0.0014 14.7 2.1 15 13-27 2-16 (33)
194 PRK09430 djlA Dna-J like membr 28.8 1.4E+02 0.0031 20.4 4.3 49 12-65 68-121 (267)
195 PLN02230 phosphoinositide phos 28.5 2.1E+02 0.0046 22.2 5.5 60 4-65 34-103 (598)
196 PRK05066 arginine repressor; P 28.2 1.2E+02 0.0027 19.1 3.6 39 17-55 25-68 (156)
197 TIGR03798 ocin_TIGR03798 bacte 28.1 1E+02 0.0022 16.2 3.8 25 16-40 25-49 (64)
198 PF09061 Stirrup: Stirrup; In 27.1 32 0.00069 18.8 0.7 30 13-42 47-76 (79)
199 PF02885 Glycos_trans_3N: Glyc 27.1 1E+02 0.0023 16.1 3.1 17 29-45 12-28 (66)
200 COG1438 ArgR Arginine represso 27.0 94 0.002 19.7 2.9 30 16-45 21-50 (150)
201 PF14069 SpoVIF: Stage VI spor 26.9 1.3E+02 0.0027 17.0 4.8 26 29-55 45-70 (79)
202 PF07492 Trehalase_Ca-bi: Neut 26.9 39 0.00085 15.5 0.9 18 38-55 2-19 (30)
203 PTZ00056 glutathione peroxidas 26.8 1.3E+02 0.0028 19.4 3.7 35 13-50 162-196 (199)
204 PF06226 DUF1007: Protein of u 26.5 61 0.0013 21.3 2.1 22 7-28 58-79 (212)
205 PRK12821 aspartyl/glutamyl-tRN 26.3 1.3E+02 0.0027 22.7 3.8 31 14-44 387-417 (477)
206 PF11829 DUF3349: Protein of u 26.2 1.4E+02 0.0031 17.4 4.6 35 16-50 20-54 (96)
207 KOG1265|consensus 26.1 2.3E+02 0.0049 23.6 5.3 60 4-64 226-299 (1189)
208 smart00874 B5 tRNA synthetase 26.1 1.1E+02 0.0024 15.9 3.6 19 28-46 15-33 (71)
209 PF08044 DUF1707: Domain of un 25.8 1.1E+02 0.0023 15.7 2.6 31 12-42 20-50 (53)
210 PF06384 ICAT: Beta-catenin-in 25.4 1.1E+02 0.0024 17.2 2.7 23 20-42 21-43 (78)
211 PF00690 Cation_ATPase_N: Cati 25.1 1.2E+02 0.0025 15.9 3.2 32 16-47 4-36 (69)
212 PF06972 DUF1296: Protein of u 24.3 1.2E+02 0.0027 16.1 2.6 19 32-50 19-37 (60)
213 PRK09462 fur ferric uptake reg 24.0 1.8E+02 0.0039 17.7 3.9 33 12-44 30-62 (148)
214 KOG4403|consensus 22.9 95 0.0021 23.4 2.7 26 30-55 63-88 (575)
215 PF12091 DUF3567: Protein of u 22.8 1.6E+02 0.0036 16.8 3.8 43 3-45 27-75 (85)
216 PF12419 DUF3670: SNF2 Helicas 22.6 1.9E+02 0.0042 17.6 3.9 44 12-55 80-133 (141)
217 PF01023 S_100: S-100/ICaBP ty 22.5 92 0.002 15.2 1.9 23 5-27 12-36 (44)
218 PF07739 TipAS: TipAS antibiot 22.2 1.7E+02 0.0036 16.7 3.7 15 29-43 51-65 (118)
219 PF10437 Lip_prot_lig_C: Bacte 22.2 1.5E+02 0.0033 16.2 3.6 40 17-59 43-83 (86)
220 PF09069 EF-hand_3: EF-hand; 22.2 1.7E+02 0.0037 16.8 4.9 57 5-65 9-76 (90)
221 TIGR03685 L21P_arch 50S riboso 22.2 1.8E+02 0.0039 17.1 4.8 43 15-63 16-58 (105)
222 COG0735 Fur Fe2+/Zn2+ uptake r 22.1 2E+02 0.0044 17.6 4.0 33 13-45 34-66 (145)
223 PF01479 S4: S4 domain; Inter 22.0 1.1E+02 0.0024 14.6 3.2 23 21-43 3-25 (48)
224 TIGR01209 RNA ligase, Pab1020 21.3 3E+02 0.0066 20.1 4.9 51 5-55 163-224 (374)
225 PF02337 Gag_p10: Retroviral G 21.2 1.4E+02 0.003 17.2 2.7 46 18-64 11-61 (90)
226 PF15144 DUF4576: Domain of un 21.1 75 0.0016 18.0 1.5 44 11-55 36-79 (88)
227 KOG2351|consensus 20.8 1.5E+02 0.0033 18.3 2.9 27 18-44 101-127 (134)
228 PF14337 DUF4393: Domain of un 20.5 2.4E+02 0.0051 17.8 4.6 48 16-65 14-66 (186)
229 cd05832 Ribosomal_L12p Ribosom 20.4 2.1E+02 0.0044 17.0 4.7 43 15-63 16-58 (106)
230 PF13592 HTH_33: Winged helix- 20.3 1.4E+02 0.0031 15.2 3.7 32 14-45 3-35 (60)
No 1
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.41 E-value=3.1e-13 Score=78.25 Aligned_cols=60 Identities=20% Similarity=0.429 Sum_probs=54.0
Q ss_pred chhccccc-CCCccccHHHHHHHHHH-hCCCCCH-HHHHHHHHHhCCCCCCceecchHHHHHHh
Q psy15708 3 QDLDQEQI-NSHGYIPTSSLREILAA-LDEQLTP-DQLDEMIEEIDTDASGTVDFDGEFDERQA 63 (87)
Q Consensus 3 ~~f~~~D~-~~~G~I~~~el~~~l~~-~g~~~s~-~ei~~l~~~~d~d~~g~I~~~~ef~~~~~ 63 (87)
..|+.||+ +++|+|+..||+.+|.+ +|..++. ++++.+++.+|.|+||.|+|. ||+..+.
T Consensus 12 ~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~-EF~~l~~ 74 (89)
T cd05022 12 SNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFE-EFWELIG 74 (89)
T ss_pred HHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHH-HHHHHHH
Confidence 56999999 99999999999999999 8877888 999999999999999999999 6664443
No 2
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.40 E-value=8.6e-13 Score=71.64 Aligned_cols=56 Identities=30% Similarity=0.602 Sum_probs=48.2
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHH----HHHHHhCCCCCCceecchHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLD----EMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~----~l~~~~d~d~~g~I~~~~ef~ 59 (87)
+.|+.+|.+++|+|+.+|+..++..++...+..+++ .+++.+|.+++|.|+|+ ||+
T Consensus 4 ~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~-Ef~ 63 (66)
T PF13499_consen 4 EAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFD-EFL 63 (66)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHH-HHH
T ss_pred HHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHH-HHh
Confidence 579999999999999999999999998776665554 45999999999999999 444
No 3
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.38 E-value=1.1e-12 Score=75.68 Aligned_cols=58 Identities=26% Similarity=0.446 Sum_probs=52.6
Q ss_pred chhcccc-cCCCc-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceecchHHHHH
Q psy15708 3 QDLDQEQ-INSHG-YIPTSSLREILAA-----LDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDER 61 (87)
Q Consensus 3 ~~f~~~D-~~~~G-~I~~~el~~~l~~-----~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~ 61 (87)
+.|+.|| ++++| +|+..||+.+|++ +|..+++++++.+++.+|.+++|.|+|. ||+..
T Consensus 12 ~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~-eF~~l 76 (88)
T cd05027 12 DVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQ-EFMAF 76 (88)
T ss_pred HHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHH-HHHHH
Confidence 5699998 79999 6999999999999 8988999999999999999999999999 65533
No 4
>KOG0027|consensus
Probab=99.38 E-value=1.4e-12 Score=81.49 Aligned_cols=56 Identities=36% Similarity=0.672 Sum_probs=53.1
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
+.|+.||++++|+|+..||+.+|..+|...+.+++..+++.+|.|++|.|+|. +|+
T Consensus 89 eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~-ef~ 144 (151)
T KOG0027|consen 89 EAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFE-EFV 144 (151)
T ss_pred HHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHH-HHH
Confidence 57999999999999999999999999999999999999999999999999999 444
No 5
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.34 E-value=2.5e-12 Score=81.36 Aligned_cols=60 Identities=27% Similarity=0.608 Sum_probs=55.6
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHh
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQA 63 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~ 63 (87)
..|+.||+|++|+|+..+|..+++.+|..+++++++.+++.++.+++|.|+|+ +|++.+.
T Consensus 96 ~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~-eF~~~~~ 155 (160)
T COG5126 96 EAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYE-EFKKLIK 155 (160)
T ss_pred HHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHH-HHHHHHh
Confidence 47999999999999999999999999999999999999999999999999999 7665443
No 6
>KOG0027|consensus
Probab=99.26 E-value=1.6e-11 Score=76.64 Aligned_cols=63 Identities=29% Similarity=0.480 Sum_probs=59.0
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcCC
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGS 66 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~~ 66 (87)
+.|+.||++++|+|+..+|..+++.+|..++..++..++.++|.+++|.|+|. +|+..+....
T Consensus 12 ~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~-eF~~l~~~~~ 74 (151)
T KOG0027|consen 12 EAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFE-EFLDLMEKLG 74 (151)
T ss_pred HHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHH-HHHHHHHhhh
Confidence 57999999999999999999999999999999999999999999999999999 8888777654
No 7
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.25 E-value=1.6e-11 Score=70.87 Aligned_cols=56 Identities=14% Similarity=0.392 Sum_probs=50.4
Q ss_pred chhccccc-CC-CccccHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCCCCceecchHHH
Q psy15708 3 QDLDQEQI-NS-HGYIPTSSLREILA---ALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 3 ~~f~~~D~-~~-~G~I~~~el~~~l~---~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
+-|+.||. ++ +|+|+..||+.++. .+|..++.++++++++.+|.+++|+|+|+ ||+
T Consensus 14 ~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~-EFv 74 (88)
T cd05029 14 AIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQ-EYV 74 (88)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHH-HHH
Confidence 46889997 67 89999999999996 36888999999999999999999999999 666
No 8
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.23 E-value=2.1e-11 Score=70.84 Aligned_cols=61 Identities=20% Similarity=0.431 Sum_probs=52.9
Q ss_pred chhccccc-CC-CccccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQI-NS-HGYIPTSSLREILAA-----LDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~-~~-~G~I~~~el~~~l~~-----~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
..|..||. ++ +|+|+..||+.+|+. +|..+++++++.+++.+|.+++|.|+|+ ||+..+..
T Consensus 12 ~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~-eF~~l~~~ 79 (94)
T cd05031 12 LTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFE-EFVSLVAG 79 (94)
T ss_pred HHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHH-HHHHHHHH
Confidence 46899997 87 699999999999986 5678899999999999999999999999 77655443
No 9
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.23 E-value=3.2e-11 Score=63.21 Aligned_cols=47 Identities=34% Similarity=0.625 Sum_probs=43.5
Q ss_pred CCccccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCceecchHHH
Q psy15708 12 SHGYIPTSSLREILAALDEQ-LTPDQLDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~-~s~~ei~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
.+|.|+.++|+.+|..+|.. ++.++++.++..+|.+++|.|+|+ ||+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~-EF~ 48 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFD-EFI 48 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHH-HHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHH-HHH
Confidence 37999999999999888999 999999999999999999999999 444
No 10
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.23 E-value=4e-11 Score=64.75 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=50.6
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDER 61 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~ 61 (87)
+.|+.+|++++|.|+..|+..++..+|. +.++++.+++.++.+++|.|+|+ ||+..
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~-ef~~~ 58 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKE-EFAIA 58 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHH-HHHHH
Confidence 5689999999999999999999998864 88999999999999999999999 66633
No 11
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.20 E-value=4.2e-11 Score=69.25 Aligned_cols=59 Identities=25% Similarity=0.508 Sum_probs=50.6
Q ss_pred chhcccc-cCCCcc-ccHHHHHHHHHH-hC----CCCCHHHHHHHHHHhCCCCCCceecchHHHHHH
Q psy15708 3 QDLDQEQ-INSHGY-IPTSSLREILAA-LD----EQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQ 62 (87)
Q Consensus 3 ~~f~~~D-~~~~G~-I~~~el~~~l~~-~g----~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~ 62 (87)
+.|+.|| .+++|+ |+..|++.+|+. +| ..++.++++.+++.+|.+++|.|+|+ +|+..+
T Consensus 13 ~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~-eF~~l~ 78 (92)
T cd05025 13 NVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQ-EFVVLV 78 (92)
T ss_pred HHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHH-HHHHHH
Confidence 5799997 999995 999999999986 54 35689999999999999999999999 666433
No 12
>PF14658 EF-hand_9: EF-hand domain
Probab=99.20 E-value=8.6e-11 Score=64.31 Aligned_cols=53 Identities=28% Similarity=0.525 Sum_probs=50.7
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCC-Cceecc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDE-QLTPDQLDEMIEEIDTDAS-GTVDFD 55 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~-~~s~~ei~~l~~~~d~d~~-g~I~~~ 55 (87)
..|+.||.++.|.|....+..+|++++. .+++++++.+..++|+++. |.|+|+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d 56 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFD 56 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHH
Confidence 4699999999999999999999999998 8999999999999999988 999999
No 13
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.20 E-value=4.7e-11 Score=69.43 Aligned_cols=59 Identities=22% Similarity=0.400 Sum_probs=49.5
Q ss_pred chhcccc-cCCCc-cccHHHHHHHHHH-h----CCCCCHHHHHHHHHHhCCCCCCceecchHHHHHH
Q psy15708 3 QDLDQEQ-INSHG-YIPTSSLREILAA-L----DEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQ 62 (87)
Q Consensus 3 ~~f~~~D-~~~~G-~I~~~el~~~l~~-~----g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~ 62 (87)
..|+.|| +|++| +|+..||+.+|+. + +...+..+++.+++++|.+++|.|+|. ||+..+
T Consensus 14 ~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~-EF~~l~ 79 (93)
T cd05026 14 RIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFN-EFVVLV 79 (93)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHH-HHHHHH
Confidence 4689999 78998 5999999999977 2 334578899999999999999999999 766443
No 14
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.15 E-value=1.2e-10 Score=67.72 Aligned_cols=59 Identities=24% Similarity=0.268 Sum_probs=52.9
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
+.|+.+|.+++|.|+..+++.+|+..+ ++.++++.++..+|.+++|.|+|+ ||+..+..
T Consensus 14 ~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~-eF~~~~~~ 72 (96)
T smart00027 14 QIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKD-EFALAMHL 72 (96)
T ss_pred HHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHH-HHHHHHHH
Confidence 579999999999999999999999865 688999999999999999999999 88855544
No 15
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.08 E-value=7.5e-10 Score=57.60 Aligned_cols=56 Identities=34% Similarity=0.621 Sum_probs=52.2
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
..|..+|.+++|.|+..++..+++.++.+.+.+.+..++..++.+++|.|+++ +|+
T Consensus 4 ~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-ef~ 59 (63)
T cd00051 4 EAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFE-EFL 59 (63)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHH-HHH
Confidence 45889999999999999999999999999999999999999999999999999 555
No 16
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.08 E-value=2.7e-10 Score=65.15 Aligned_cols=60 Identities=22% Similarity=0.422 Sum_probs=51.2
Q ss_pred chhccccc--CCCccccHHHHHHHHHH-hCCC----CCHHHHHHHHHHhCCCCCCceecchHHHHHHh
Q psy15708 3 QDLDQEQI--NSHGYIPTSSLREILAA-LDEQ----LTPDQLDEMIEEIDTDASGTVDFDGEFDERQA 63 (87)
Q Consensus 3 ~~f~~~D~--~~~G~I~~~el~~~l~~-~g~~----~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~ 63 (87)
..|..||+ +++|.|+..++..+++. +|.. ++..+++.++..+|.+++|.|+|+ +|+..+.
T Consensus 12 ~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~-eF~~~~~ 78 (88)
T cd00213 12 DVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQ-EFLVLIG 78 (88)
T ss_pred HHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHH-HHHHHHH
Confidence 46999999 89999999999999976 5544 458999999999999999999999 7765443
No 17
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.08 E-value=3.2e-10 Score=71.78 Aligned_cols=62 Identities=27% Similarity=0.389 Sum_probs=57.4
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcCC
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGS 66 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~~ 66 (87)
+.|..+|++++|.|+..+|..+++.+|.+++..++.+++..++. +.+.|+|. +|+.++...+
T Consensus 24 eaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~-~Fl~~ms~~~ 85 (160)
T COG5126 24 EAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFP-EFLTVMSVKL 85 (160)
T ss_pred HHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHH-HHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999 89999999 8887766654
No 18
>KOG0028|consensus
Probab=99.02 E-value=8.5e-10 Score=69.64 Aligned_cols=53 Identities=32% Similarity=0.465 Sum_probs=51.4
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFD 55 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~ 55 (87)
..|+.+|.+.+|.|+..+|+.+++.+|.++++++++.|+.++|.+++|-|+-+
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevnee 162 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEE 162 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHH
Confidence 46899999999999999999999999999999999999999999999999999
No 19
>PTZ00184 calmodulin; Provisional
Probab=99.02 E-value=1e-09 Score=66.83 Aligned_cols=53 Identities=30% Similarity=0.662 Sum_probs=48.6
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFD 55 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~ 55 (87)
..|+.+|.+++|+|+..++..++..++..++.+++..++..+|.+++|.|+|+
T Consensus 88 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 140 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 140 (149)
T ss_pred HHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHH
Confidence 46888999999999999999999998888999999999999999999999999
No 20
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.99 E-value=1.4e-09 Score=62.85 Aligned_cols=57 Identities=19% Similarity=0.418 Sum_probs=48.2
Q ss_pred chhcc-cccCCCc-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCceecchHHHH
Q psy15708 3 QDLDQ-EQINSHG-YIPTSSLREILAAL-----DEQLTPDQLDEMIEEIDTDASGTVDFDGEFDE 60 (87)
Q Consensus 3 ~~f~~-~D~~~~G-~I~~~el~~~l~~~-----g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~ 60 (87)
..|+. +|++++| +|+.+||+.++... +...++.+++++++.+|.|++|.|+|+ ||+.
T Consensus 13 ~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~-EF~~ 76 (89)
T cd05023 13 AVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQ-EFLN 76 (89)
T ss_pred HHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHH-HHHH
Confidence 45777 6788876 99999999999885 335677899999999999999999999 6663
No 21
>PTZ00183 centrin; Provisional
Probab=98.96 E-value=2.5e-09 Score=66.02 Aligned_cols=58 Identities=26% Similarity=0.433 Sum_probs=49.8
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDER 61 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~ 61 (87)
..|+.+|.+++|+|+..++..++..+|..++..++..++..+|.+++|.|+|+ +|...
T Consensus 94 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~-ef~~~ 151 (158)
T PTZ00183 94 KAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEE-EFYRI 151 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHH-HHHHH
Confidence 35888999999999999999999888888999999999999999999999999 55533
No 22
>PTZ00183 centrin; Provisional
Probab=98.91 E-value=5e-09 Score=64.62 Aligned_cols=61 Identities=25% Similarity=0.471 Sum_probs=56.4
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
..|..+|.+++|+|+..++..+++.+|..++..++..++..+|.+++|.|+|. ||+..+..
T Consensus 21 ~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~-eF~~~~~~ 81 (158)
T PTZ00183 21 EAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFE-EFLDIMTK 81 (158)
T ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHH-HHHHHHHH
Confidence 46889999999999999999999999988899999999999999999999999 99987654
No 23
>KOG0028|consensus
Probab=98.90 E-value=3.7e-09 Score=66.75 Aligned_cols=61 Identities=16% Similarity=0.372 Sum_probs=56.5
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
..|..||.+++|+|+..||..+++++|..+..++|.+++.++|+++.|.|+|+ +|+.++..
T Consensus 37 e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe-~f~~~mt~ 97 (172)
T KOG0028|consen 37 EAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFE-DFRRVMTV 97 (172)
T ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechH-HHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999 88766543
No 24
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.88 E-value=4.8e-09 Score=63.37 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=46.9
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQ 62 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~ 62 (87)
-.|..+|.|++|+|+.+||..+. ....+..+..++..+|.|++|.|+++ ||...+
T Consensus 52 w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~-Ef~~cl 106 (116)
T cd00252 52 WMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLD-EWCYCF 106 (116)
T ss_pred HHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHH-HHHHHH
Confidence 36899999999999999999876 34567788999999999999999999 666444
No 25
>PTZ00184 calmodulin; Provisional
Probab=98.86 E-value=8.2e-09 Score=62.84 Aligned_cols=62 Identities=31% Similarity=0.489 Sum_probs=57.3
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
..|..+|.+++|.|+..++..++..++..++.+++..+++.+|.+++|.|+|+ +|+..+...
T Consensus 15 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~-ef~~~l~~~ 76 (149)
T PTZ00184 15 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP-EFLTLMARK 76 (149)
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHH-HHHHHHHHh
Confidence 46889999999999999999999999988899999999999999999999999 999887753
No 26
>KOG0030|consensus
Probab=98.85 E-value=5e-09 Score=64.89 Aligned_cols=58 Identities=24% Similarity=0.509 Sum_probs=51.1
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQ 62 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~ 62 (87)
+.++.||++++|+|...+|+.+|.++|..++++|++.++.-.. |++|.|+|+ .|+..+
T Consensus 92 egLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE-~fVk~i 149 (152)
T KOG0030|consen 92 EGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYE-AFVKHI 149 (152)
T ss_pred HHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHH-HHHHHH
Confidence 3568999999999999999999999999999999999998754 788999999 666443
No 27
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.83 E-value=6.1e-09 Score=59.93 Aligned_cols=59 Identities=19% Similarity=0.387 Sum_probs=48.7
Q ss_pred chhcccccC--CCccccHHHHHHHHH-HhCCCCC----HHHHHHHHHHhCCCCCCceecchHHHHHH
Q psy15708 3 QDLDQEQIN--SHGYIPTSSLREILA-ALDEQLT----PDQLDEMIEEIDTDASGTVDFDGEFDERQ 62 (87)
Q Consensus 3 ~~f~~~D~~--~~G~I~~~el~~~l~-~~g~~~s----~~ei~~l~~~~d~d~~g~I~~~~ef~~~~ 62 (87)
..|+.|+.. .+|+|+..||+.+|. .++..++ +++++.+++.+|.+++|.|+|+ ||+..+
T Consensus 12 ~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~-eF~~~~ 77 (88)
T cd05030 12 NVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFE-EFLVLV 77 (88)
T ss_pred HHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHH-HHHHHH
Confidence 457888855 479999999999997 5565566 8999999999999999999999 666433
No 28
>KOG0037|consensus
Probab=98.81 E-value=1.5e-08 Score=66.72 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=54.3
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQ 62 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~ 62 (87)
+.|+.||.|++|.|+..||+.+|..+|..++..-.+.+++++|..++|.|.|+ +|+...
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD-~FI~cc 186 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFD-DFIQCC 186 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHH-HHHHHH
Confidence 46889999999999999999999999999999999999999998889999999 888443
No 29
>KOG0034|consensus
Probab=98.78 E-value=2.1e-08 Score=65.01 Aligned_cols=60 Identities=28% Similarity=0.530 Sum_probs=48.5
Q ss_pred hhcccccCCCccccHHHHHHHHHHh-CCCCC--HHH----HHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAAL-DEQLT--PDQ----LDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~-g~~~s--~~e----i~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
.|++||.+++|+|+.+|+..++..+ +...+ ++. ++.++.++|.|+||.|+|+ ||.+++..
T Consensus 109 aF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~Isfe-Ef~~~v~~ 175 (187)
T KOG0034|consen 109 AFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFE-EFCKVVEK 175 (187)
T ss_pred HHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHH-HHHHHHHc
Confidence 5899999999999999999999886 43444 444 4556888999999999999 77766554
No 30
>KOG0031|consensus
Probab=98.78 E-value=1.8e-08 Score=63.39 Aligned_cols=57 Identities=28% Similarity=0.521 Sum_probs=50.9
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
+.|..+|.|++|.|+.++|+.++.++|..+++++++.|+.+ ..|.|+|- -|+.++..
T Consensus 36 EAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft-~FLTmfGe 92 (171)
T KOG0031|consen 36 EAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFT-VFLTMFGE 92 (171)
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHH-HHHHHHHH
Confidence 57899999999999999999999999999999999999998 45789999 66666554
No 31
>KOG0031|consensus
Probab=98.76 E-value=2.6e-08 Score=62.67 Aligned_cols=60 Identities=25% Similarity=0.430 Sum_probs=54.9
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHh
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQA 63 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~ 63 (87)
..|+.||.++.|.|..+.|+.+|...|..++.+||+.+++.+..+..|.++|. +|+..+.
T Consensus 105 ~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~-~~~~~it 164 (171)
T KOG0031|consen 105 NAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYK-AFTYIIT 164 (171)
T ss_pred HHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHH-HHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999 5555443
No 32
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.75 E-value=4.8e-08 Score=50.88 Aligned_cols=44 Identities=16% Similarity=0.415 Sum_probs=37.0
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHH
Q psy15708 15 YIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 15 ~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
+++..|++.+|+.+.+.+++..+..+|+++|.+++|+++.+ ||+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~-Ef~ 44 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGE-EFE 44 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHH-HHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHH-HHH
Confidence 36789999999999999999999999999999999999999 999
No 33
>KOG0041|consensus
Probab=98.73 E-value=1.9e-08 Score=65.79 Aligned_cols=57 Identities=28% Similarity=0.423 Sum_probs=52.9
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDE 60 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~ 60 (87)
.-|+.||.+.||+|+..||+.+|.++|.+-|.--++.++++.|.|.+|+|+|. ||.=
T Consensus 103 ~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfr-eflL 159 (244)
T KOG0041|consen 103 SMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFR-EFLL 159 (244)
T ss_pred HHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHH-HHHH
Confidence 45899999999999999999999999998888899999999999999999999 7653
No 34
>KOG0030|consensus
Probab=98.70 E-value=1.7e-08 Score=62.54 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=53.4
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC--CCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTD--ASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d--~~g~I~~~~ef~~~~~~ 64 (87)
+.|..||..++|+|+...+..+|+++|.++++.++.+.+.+...+ +-.+|+|+ +|+.+...
T Consensus 15 e~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE-~fLpm~q~ 77 (152)
T KOG0030|consen 15 EAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFE-EFLPMYQQ 77 (152)
T ss_pred HHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHH-HHHHHHHH
Confidence 579999999999999999999999999999999999999998876 45789999 66655544
No 35
>KOG0036|consensus
Probab=98.47 E-value=3.5e-07 Score=65.18 Aligned_cols=56 Identities=21% Similarity=0.428 Sum_probs=53.4
Q ss_pred hhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHH
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDE 60 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~ 60 (87)
-|+..|.+.||.|+.+|+...++.+|.+++.+++.++++.+|.++++.|+|+ ||.+
T Consensus 87 ~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~-e~rd 142 (463)
T KOG0036|consen 87 IFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLE-EWRD 142 (463)
T ss_pred HHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccH-HHHh
Confidence 5888999999999999999999999999999999999999999999999999 8874
No 36
>PLN02964 phosphatidylserine decarboxylase
Probab=98.43 E-value=5.5e-07 Score=67.50 Aligned_cols=60 Identities=18% Similarity=0.339 Sum_probs=44.0
Q ss_pred hhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
-|+.+|.+++|.|+..|+..++..++...+++++..+|+.+|.|++|.|+++ ||...+..
T Consensus 184 mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~d-EL~~vL~~ 243 (644)
T PLN02964 184 ILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTID-ELAALLAL 243 (644)
T ss_pred HHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHH-HHHHHHHh
Confidence 4666777777777777777777777666677777777777777777777777 77766655
No 37
>KOG0044|consensus
Probab=98.40 E-value=8.5e-07 Score=57.83 Aligned_cols=60 Identities=20% Similarity=0.469 Sum_probs=49.4
Q ss_pred hhcccccCCCccccHHHHHHHHHHh----CC-------CCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAAL----DE-------QLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~----g~-------~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
.|++||.|++|+|+..|+-.+++++ +. .-..+-+..+|+.+|.|+||.|+++ ||.+....
T Consensus 105 ~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~e-ef~~~~~~ 175 (193)
T KOG0044|consen 105 AFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLE-EFIEGCKA 175 (193)
T ss_pred hheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHH-HHHHHhhh
Confidence 4899999999999999998888764 21 1235668899999999999999999 88866555
No 38
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.34 E-value=6.4e-07 Score=41.53 Aligned_cols=23 Identities=43% Similarity=0.882 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCCCCceecchHHH
Q psy15708 36 QLDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 36 ei~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
|++.+|+.+|.|++|.|+++ ||.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~-Ef~ 23 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFE-EFK 23 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHH-HHH
T ss_pred CHHHHHHHHCCCCCCcCCHH-HHH
Confidence 57899999999999999999 555
No 39
>KOG0377|consensus
Probab=98.33 E-value=1.2e-06 Score=63.35 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=54.9
Q ss_pred chhcccccCCCccccHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAAL----DEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~----g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
.-|+.+|.|++|.|+.+|++.+.+-+ ...++.+++.++-+.+|.++||.|+++ ||.++.+-.
T Consensus 551 tiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlN-EfLeAFrlv 616 (631)
T KOG0377|consen 551 TIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLN-EFLEAFRLV 616 (631)
T ss_pred HHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHH-HHHHHHhhh
Confidence 45899999999999999999986654 467899999999999999999999999 999887764
No 40
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.29 E-value=3.6e-06 Score=48.86 Aligned_cols=57 Identities=19% Similarity=0.388 Sum_probs=44.8
Q ss_pred hhcccccCCCccccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHH
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAA-----LDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQ 62 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~-----~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~ 62 (87)
.|..|-. +.+.++..||+.+|.+ +.-.-.+..++++++.+|.|+||.|+|. ||+..+
T Consensus 13 ~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~-EF~~Lv 74 (91)
T cd05024 13 TFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQ-SFFSLI 74 (91)
T ss_pred HHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHH-HHHHHH
Confidence 4666663 3568999999999965 2334467889999999999999999999 776443
No 41
>KOG0044|consensus
Probab=98.29 E-value=8.5e-07 Score=57.84 Aligned_cols=61 Identities=16% Similarity=0.079 Sum_probs=51.3
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
..|+.||.|++|+|+..|+..++..+.....++.++-.|+.+|.|++|.|+++ |+.+.+.+
T Consensus 68 ~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~-Eml~iv~~ 128 (193)
T KOG0044|consen 68 LVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKE-EMLKIVQA 128 (193)
T ss_pred HHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHH-HHHHHHHH
Confidence 46889999999999999988888877777778888888999999999999999 77755544
No 42
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.26 E-value=6.4e-07 Score=41.53 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=23.7
Q ss_pred chhcccccCCCccccHHHHHHHHHHh
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAAL 28 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~ 28 (87)
+.|+.||+|++|+|+.+|+..+|+++
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 56899999999999999999999864
No 43
>KOG0038|consensus
Probab=98.25 E-value=3.4e-06 Score=53.08 Aligned_cols=60 Identities=23% Similarity=0.494 Sum_probs=51.7
Q ss_pred hhcccccCCCccccHHHHHHHHHHhC-CCCCHHHHH----HHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALD-EQLTPDQLD----EMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g-~~~s~~ei~----~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
.|++||-|++++|...+|...+.++. -.++.+|+. +++.+.|.|+||+++|. ||..++..
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~-eFe~~i~r 177 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFA-EFEHVILR 177 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHH-HHHHHHHh
Confidence 58999999999999999999998875 467888865 56788999999999999 88877654
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=98.24 E-value=2.5e-06 Score=64.07 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=51.2
Q ss_pred chhcccccCCCccccHHHHHHHHHHhC-CCCCHHH---HHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALD-EQLTPDQ---LDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g-~~~s~~e---i~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
+.|+.+|+|++|++ +..+++++| ..+++++ ++.++..+|.+++|.|+|+ ||+..+..
T Consensus 147 eaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~Idfd-EFl~lL~~ 207 (644)
T PLN02964 147 ESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFS-EFSDLIKA 207 (644)
T ss_pred HHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHH-HHHHHHHH
Confidence 46999999999997 888999999 5888887 8999999999999999999 99987765
No 45
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.15 E-value=1.7e-06 Score=40.40 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.4
Q ss_pred chhcccccCCCccccHHHHHHHHH-HhC
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILA-ALD 29 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~-~~g 29 (87)
+.|+.+|.+++|+|+.+|+..+|+ ++|
T Consensus 4 ~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 4 EAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 468999999999999999999998 565
No 46
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.15 E-value=9.8e-06 Score=48.10 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=48.0
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHh
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQA 63 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~ 63 (87)
+.|+..|. .+|+|+..+.+.+|...+ ++.+.+..+|.-.|.+++|.++++ ||+-+++
T Consensus 14 ~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~-EF~iAm~ 70 (104)
T PF12763_consen 14 QIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFE-EFAIAMH 70 (104)
T ss_dssp HHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHH-HHHHHHH
T ss_pred HHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHH-HHHHHHH
Confidence 45777775 689999999999998864 688999999999999999999999 9986654
No 47
>KOG0037|consensus
Probab=98.12 E-value=6.1e-06 Score=54.50 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=54.5
Q ss_pred chhcccccCCCccccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALD-EQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g-~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
..|...|.+..|.|+.+||+.+|.... -+++.+.++-|+..+|.+.+|+|+|. ||...|..
T Consensus 61 ~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~-EF~~Lw~~ 122 (221)
T KOG0037|consen 61 GWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFK-EFKALWKY 122 (221)
T ss_pred HHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHH-HHHHHHHH
Confidence 468889999999999999999998654 47899999999999999999999999 99988766
No 48
>KOG0036|consensus
Probab=97.96 E-value=2e-05 Score=56.40 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=53.5
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQ-LTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~-~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
.-|+.||.+++|.++..++.+.+.++..+ +..+.+..++..+|.|.+|.++|. ||..-+.+
T Consensus 18 ~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~-eF~~Y~~~ 79 (463)
T KOG0036|consen 18 CLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYS-EFKRYLDN 79 (463)
T ss_pred HHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHH-HHHHHHHH
Confidence 35889999999999999999999998876 777888899999999999999999 88765544
No 49
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.80 E-value=3.3e-05 Score=55.19 Aligned_cols=45 Identities=13% Similarity=0.319 Sum_probs=38.8
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDER 61 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~ 61 (87)
..|+.+|.+++|+|+.+|+.. ++.+|..+|.|++|.|+++ ||...
T Consensus 338 ~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~e-Ef~~~ 382 (391)
T PRK12309 338 EIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPE-EMRAG 382 (391)
T ss_pred HHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHH-HHHHH
Confidence 468999999999999999831 5778999999999999999 77743
No 50
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.78 E-value=3.8e-06 Score=50.47 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=37.5
Q ss_pred hhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHH
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef 58 (87)
.|..+|.|++|.++..|+..+...+ ...+.=+..+++.+|.|+||.|++. ||
T Consensus 59 ~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~-EW 110 (113)
T PF10591_consen 59 KFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLD-EW 110 (113)
T ss_dssp HHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHH-HH
T ss_pred hHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHH-HH
Confidence 4889999999999999998876544 3445557889999999999999999 44
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.66 E-value=2.9e-05 Score=34.65 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=14.4
Q ss_pred hhcccccCCCccccHHHHHHH
Q psy15708 4 DLDQEQINSHGYIPTSSLREI 24 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~ 24 (87)
.|+.+|.|++|.|+.+|+..+
T Consensus 4 ~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 4 AFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHH
Confidence 466777777777777777654
No 52
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.66 E-value=8.3e-05 Score=33.13 Aligned_cols=22 Identities=36% Similarity=0.853 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCCCCceecchHHH
Q psy15708 37 LDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 37 i~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
++.+|+.+|.|++|.|++. ||.
T Consensus 1 l~~~F~~~D~d~DG~is~~-E~~ 22 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFE-EFQ 22 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHH-HHH
T ss_pred CHHHHHHHcCCCCCcCCHH-HHH
Confidence 4678999999999999999 554
No 53
>KOG4223|consensus
Probab=97.56 E-value=4.9e-05 Score=52.78 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=48.3
Q ss_pred hcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHH
Q psy15708 5 LDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 5 f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
|..+|+|++|+++..|++.++.--+....+.+++.++-+.|.|+||+++++ |.+
T Consensus 247 ~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~e-EIl 300 (325)
T KOG4223|consen 247 FEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKE-EIL 300 (325)
T ss_pred HHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHH-HHh
Confidence 456799999999999999988777777888999999999999999999999 655
No 54
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.39 E-value=0.0003 Score=32.53 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCCCCceecchHHHHH
Q psy15708 36 QLDEMIEEIDTDASGTVDFDGEFDER 61 (87)
Q Consensus 36 ei~~l~~~~d~d~~g~I~~~~ef~~~ 61 (87)
+++.+|+.+|.+++|.|+++ ||...
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~-el~~~ 25 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFE-ELRAI 25 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHH-HHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHH-HHHHH
Confidence 46789999999999999999 55533
No 55
>KOG0046|consensus
Probab=97.35 E-value=0.00039 Score=51.32 Aligned_cols=62 Identities=19% Similarity=0.415 Sum_probs=53.4
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCC---CCHHHHHHHHHHhCCCCCCceecchHHHHHHhcCC
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQ---LTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGS 66 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~---~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~~ 66 (87)
+.|...| +++|+|+..++..++.+.+.. ...++++.++...+.|.+|.|+|+ +|+....+..
T Consensus 23 ~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe-~f~~~~~~l~ 87 (627)
T KOG0046|consen 23 EKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFE-EFVGIFLNLK 87 (627)
T ss_pred HHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHH-HHHHHHHhhh
Confidence 5788889 999999999999999987653 357899999999999999999999 9997665543
No 56
>KOG0034|consensus
Probab=97.34 E-value=0.00091 Score=43.52 Aligned_cols=64 Identities=28% Similarity=0.394 Sum_probs=45.1
Q ss_pred chhcccccC-CCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc-eecchHHHHHHhcCCCCccc
Q psy15708 3 QDLDQEQIN-SHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGT-VDFDGEFDERQAAGSIPARG 71 (87)
Q Consensus 3 ~~f~~~D~~-~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~-I~~~~ef~~~~~~~~~~~~~ 71 (87)
.+|..+|.+ ++|+++.+++..+. .+..++ -.+++++.++.+++|. |+|. +|+..+..-++++..
T Consensus 37 ~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np---~~~rI~~~f~~~~~~~~v~F~-~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 37 ERFKKLDRNNGDGYLTKEEFLSIP-ELALNP---LADRIIDRFDTDGNGDPVDFE-EFVRLLSVFSPKASK 102 (187)
T ss_pred HHHHHhccccccCccCHHHHHHHH-HHhcCc---HHHHHHHHHhccCCCCccCHH-HHHHHHhhhcCCccH
Confidence 357788887 88888888888877 333333 4566777777777776 8888 888777776655544
No 57
>KOG4223|consensus
Probab=97.33 E-value=0.0002 Score=49.87 Aligned_cols=63 Identities=14% Similarity=0.330 Sum_probs=50.2
Q ss_pred cchhcccccCCCccccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 2 DQDLDQEQINSHGYIPTSSLREILAALD-EQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 2 ~~~f~~~D~~~~G~I~~~el~~~l~~~g-~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
..+|+.-|.|++|.++.+|+..+|---. ..+..--|...+..+|+|+||.|+++ ||+--+...
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~e-Efigd~~~~ 229 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLE-EFIGDLYSH 229 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHH-HHHhHHhhc
Confidence 3589999999999999999998884322 23444556677888999999999999 999777654
No 58
>KOG4065|consensus
Probab=97.33 E-value=0.0011 Score=40.39 Aligned_cols=58 Identities=16% Similarity=0.402 Sum_probs=43.6
Q ss_pred chhcccccCCCccccHHHHHHHHHHh------CC---C-CCHHHHHHHHH----HhCCCCCCceecchHHHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAAL------DE---Q-LTPDQLDEMIE----EIDTDASGTVDFDGEFDER 61 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~------g~---~-~s~~ei~~l~~----~~d~d~~g~I~~~~ef~~~ 61 (87)
..|.+.|-|++|.++.-||..++... |. + +++.|+..++. .-|.++||.|+|. ||.++
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYg-EflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYG-EFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHH-HHHhh
Confidence 36888899999999999999888653 21 1 45667666555 5688999999999 66543
No 59
>KOG0040|consensus
Probab=97.11 E-value=0.00084 Score=54.75 Aligned_cols=55 Identities=15% Similarity=0.361 Sum_probs=48.6
Q ss_pred hhcccccCCCccccHHHHHHHHHHhCCCCC-------HHHHHHHHHHhCCCCCCceecchHHH
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALDEQLT-------PDQLDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g~~~s-------~~ei~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
.|+.||++.+|.++.++++.+|+++|..++ +.+.+.++.-.|++.+|.|+.. +|+
T Consensus 2258 ~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~-dY~ 2319 (2399)
T KOG0040|consen 2258 MFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQ-DYM 2319 (2399)
T ss_pred HHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHH-HHH
Confidence 589999999999999999999999997652 3488999999999999999999 665
No 60
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.73 E-value=0.002 Score=27.64 Aligned_cols=23 Identities=39% Similarity=0.790 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCCCCceecchHHH
Q psy15708 36 QLDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 36 ei~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
+++.+++.+|.+++|.|++. +|.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~-e~~ 23 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFE-EFK 23 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHH-HHH
Confidence 36778999999999999999 555
No 61
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.51 E-value=0.0027 Score=27.20 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.9
Q ss_pred chhcccccCCCccccHHHHHHHHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAA 27 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~ 27 (87)
..|+.+|.+++|.|+..++..+++.
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3588899999999999999998865
No 62
>KOG2243|consensus
Probab=96.49 E-value=0.0052 Score=50.48 Aligned_cols=63 Identities=13% Similarity=0.350 Sum_probs=55.9
Q ss_pred cchhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcCC
Q psy15708 2 DQDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGS 66 (87)
Q Consensus 2 ~~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~~ 66 (87)
+.-|+-||+|+.|.|+..++.++|.. ....++.+++-++.-...|.+..++|. +|+...+.+.
T Consensus 4060 sdtfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~-dfv~rfhepa 4122 (5019)
T KOG2243|consen 4060 SDTFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYE-DFVDRFHEPA 4122 (5019)
T ss_pred cccchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHH-HHHHHhcCch
Confidence 34689999999999999999999986 356899999999999999999999999 9999988763
No 63
>KOG2643|consensus
Probab=96.49 E-value=0.0047 Score=44.89 Aligned_cols=55 Identities=13% Similarity=0.262 Sum_probs=37.8
Q ss_pred hhcccccCCCccccHHHHHHHHHHh------CC----CCC-----HHHHHHHHH--HhCCCCCCceecchHHH
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAAL------DE----QLT-----PDQLDEMIE--EIDTDASGTVDFDGEFD 59 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~------g~----~~s-----~~ei~~l~~--~~d~d~~g~I~~~~ef~ 59 (87)
.|++||.|++|.|+.+|+..+.+-+ |. .++ ..++...+. -+..+++++++++ +|.
T Consensus 238 AFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~d-eF~ 309 (489)
T KOG2643|consen 238 AFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSID-EFL 309 (489)
T ss_pred eeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHH-HHH
Confidence 5899999999999999997765321 21 011 113333222 3678999999999 888
No 64
>KOG0042|consensus
Probab=96.28 E-value=0.0048 Score=46.24 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=51.8
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
.+|..+|.++.|+++..++..+|+..+.+++++.+++++.+.+..-+|.+... ||.
T Consensus 597 ~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~-e~~ 652 (680)
T KOG0042|consen 597 TRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELR-EFL 652 (680)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHH-HHH
Confidence 57899999999999999999999999999999999999999999889999999 554
No 65
>KOG1955|consensus
Probab=96.27 E-value=0.0081 Score=44.56 Aligned_cols=59 Identities=22% Similarity=0.379 Sum_probs=52.3
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
++|+.+-.|..|+|+..--+.+|.+. .++-+|+..+|...|.+.||.++.. ||+.+++-
T Consensus 235 nQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~-EFcAAfHL 293 (737)
T KOG1955|consen 235 NQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLS-EFCAAFHL 293 (737)
T ss_pred hhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHH-HHHhhHhh
Confidence 46888889999999999999999875 4677899999999999999999999 99988765
No 66
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.21 E-value=0.0045 Score=31.73 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=21.9
Q ss_pred chhcccccCCCccccHHHHHHHHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAA 27 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~ 27 (87)
.-|..+|.+++|+|+..|+..++..
T Consensus 29 ~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 29 RLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3578899999999999999998864
No 67
>KOG4251|consensus
Probab=95.72 E-value=0.0046 Score=42.27 Aligned_cols=60 Identities=17% Similarity=0.346 Sum_probs=42.7
Q ss_pred hhcccccCCCccccHHHHHHHHHH-hCCCC--CHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAA-LDEQL--TPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~-~g~~~--s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
-|...|.|.+|+|+..|+++.+.. ....+ +-++-+-.|+..|.|++|.|+|+ ||.-....
T Consensus 106 iFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWd-EykvkFla 168 (362)
T KOG4251|consen 106 IFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWD-EYKVKFLA 168 (362)
T ss_pred HHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehh-hhhhHHHh
Confidence 478889999999999999887643 22221 11222334667899999999999 88755544
No 68
>KOG0377|consensus
Probab=95.60 E-value=0.032 Score=41.02 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=52.2
Q ss_pred chhcccccCCCccccHHHHHHHHHHh-CCCCC-------------------------------HH---------------
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAAL-DEQLT-------------------------------PD--------------- 35 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~-g~~~s-------------------------------~~--------------- 35 (87)
..|+.+|.+..|+|+......+++.+ |++++ .+
T Consensus 468 ~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks 547 (631)
T KOG0377|consen 468 DEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKS 547 (631)
T ss_pred HHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchh
Confidence 46899999999999999888887663 22211 01
Q ss_pred HHHHHHHHhCCCCCCceecchHHHHHHhcCCCCcccccchh
Q psy15708 36 QLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKISTQ 76 (87)
Q Consensus 36 ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~~~~~~~~~~~~ 76 (87)
.++-+|+-+|.|+.|.|+.+ ||..++.-.+.-..+.++..
T Consensus 548 ~LetiF~~iD~D~SG~isld-EF~~a~~l~~sh~~~~i~~~ 587 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLD-EFRTAWKLLSSHMNGAISDD 587 (631)
T ss_pred hHHHHHHHhccCCCCceeHH-HHHHHHHHHHhhcCCCcCHH
Confidence 12346777999999999999 99999887654444444444
No 69
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=95.42 E-value=0.027 Score=29.78 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCCCceecchHHHHHHhcCC
Q psy15708 37 LDEMIEEIDTDASGTVDFDGEFDERQAAGS 66 (87)
Q Consensus 37 i~~l~~~~d~d~~g~I~~~~ef~~~~~~~~ 66 (87)
++.+|+.+|.+++|.|+.+ ||...+....
T Consensus 2 l~~~F~~~D~d~~G~i~~~-el~~~~~~~~ 30 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKE-ELRRALKHLG 30 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHH-HHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCHH-HHHHHHHHhc
Confidence 6789999999999999999 9998877754
No 70
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.07 E-value=0.046 Score=30.47 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=43.8
Q ss_pred hhcccccCCCccccHHHHHHHHHHhC-C-CCCHHHHHHHHHHhCCC----CCCceecchHHHHHHh
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALD-E-QLTPDQLDEMIEEIDTD----ASGTVDFDGEFDERQA 63 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g-~-~~s~~ei~~l~~~~d~d----~~g~I~~~~ef~~~~~ 63 (87)
.|..+-. +.+.++.++|...|.... . ..+.+++..++..+..+ ..+.++++ +|..-+.
T Consensus 5 if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~-gF~~fL~ 68 (83)
T PF09279_consen 5 IFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLE-GFTRFLF 68 (83)
T ss_dssp HHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHH-HHHHHHH
T ss_pred HHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHH-HHHHHHC
Confidence 4666744 788999999999997753 3 46899999999987644 46899999 6654443
No 71
>KOG2643|consensus
Probab=94.92 E-value=0.007 Score=44.00 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=41.4
Q ss_pred CccccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcCC
Q psy15708 13 HGYIPTSSLREILAA-LDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGS 66 (87)
Q Consensus 13 ~G~I~~~el~~~l~~-~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~~ 66 (87)
.+.|+..+++.+... .|+++++.-++-+|.-+|.|+||.++.+ ||+.++.+-+
T Consensus 402 g~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~-EFl~Vmk~Rm 455 (489)
T KOG2643|consen 402 GASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHK-EFLAVMKRRM 455 (489)
T ss_pred CCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHH-HHHHHHHHHh
Confidence 456777777776654 4677777777777888999999999999 9998887743
No 72
>KOG1029|consensus
Probab=94.56 E-value=0.037 Score=43.07 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=50.9
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
+.|+.+|+...|+++...-+.+|...+ +++..+-.+|--.|.|+||+++-+ ||+-+++-
T Consensus 199 QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~d-Efilam~l 257 (1118)
T KOG1029|consen 199 QLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSAD-EFILAMHL 257 (1118)
T ss_pred HHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHH-HHHHHHHH
Confidence 568999999999999999998887654 678888899999999999999999 99866653
No 73
>KOG4578|consensus
Probab=94.39 E-value=0.039 Score=39.09 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=44.4
Q ss_pred hhcccccCCCccccHHHHH---HHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 4 DLDQEQINSHGYIPTSSLR---EILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~---~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
.|.++|+|.++.|...|++ .++.+. .-...=.+++++.+|.|+|.+|++. ||..-+...
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~--s~~rkC~rk~~~yCDlNkDKkISl~-Ew~~CL~~~ 399 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKK--SKPRKCSRKFFKYCDLNKDKKISLD-EWRGCLGVE 399 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhh--ccHHHHhhhcchhcccCCCceecHH-HHhhhhccc
Confidence 5899999999999999864 444432 2233446778999999999999999 777655543
No 74
>KOG0169|consensus
Probab=93.73 E-value=0.1 Score=40.29 Aligned_cols=60 Identities=18% Similarity=0.350 Sum_probs=52.9
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHh
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQA 63 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~ 63 (87)
.-|+..|++.+|.++..+...++..+...+....+..++++.+...++++.+. +|++.-.
T Consensus 140 ~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~-~~~~~~~ 199 (746)
T KOG0169|consen 140 SIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEE-EFVKFRK 199 (746)
T ss_pred HHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHH-HHHHHHH
Confidence 35788899999999999999999999999999999999999988889999998 7774433
No 75
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.72 E-value=0.46 Score=29.88 Aligned_cols=59 Identities=12% Similarity=0.225 Sum_probs=45.1
Q ss_pred hcccccCCCccccHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 5 LDQEQINSHGYIPTSSLREILAALDE---QLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 5 f~~~D~~~~G~I~~~el~~~l~~~g~---~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
|..|-..+...++...+..+++..++ .++...++-+|..+-..+..+|+|+ +|..++..
T Consensus 8 f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~-~F~~aL~~ 69 (154)
T PF05517_consen 8 FASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFE-QFLEALAE 69 (154)
T ss_dssp HHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHH-HHHHHHHH
T ss_pred HHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHH-HHHHHHHH
Confidence 33444556677999999999998764 5899999999999877777789999 99877765
No 76
>KOG2562|consensus
Probab=93.45 E-value=0.16 Score=37.41 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=43.4
Q ss_pred hcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHH----hCCCCCCceecchHHHHHHhc
Q psy15708 5 LDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEE----IDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 5 f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~----~d~d~~g~I~~~~ef~~~~~~ 64 (87)
|-.+|+|.+|.|+.++|..+-.. .++.--++++|.. .-...+|+++|+ +|++-+.+
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdyk-dFv~FilA 343 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYK-DFVDFILA 343 (493)
T ss_pred HhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHH-HHHHHHHH
Confidence 55689999999999999877643 3566678889883 344578999999 99866655
No 77
>KOG3555|consensus
Probab=93.43 E-value=0.21 Score=35.77 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=50.4
Q ss_pred hcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcCCCCccccc
Q psy15708 5 LDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73 (87)
Q Consensus 5 f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~~~~~~~~~ 73 (87)
|..+|.|.+|.++..||..+- ..-.+.=|+.+|..+|...||.|+-+ ||..-+.....|-...+
T Consensus 256 FnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~-EWC~CF~k~~~pc~~e~ 319 (434)
T KOG3555|consen 256 FNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTN-EWCYCFQKSDPPCQAEL 319 (434)
T ss_pred hhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccc-hhhhhhccCCCccccHH
Confidence 788999999999999998654 23345568889999999999999999 88877776664444333
No 78
>KOG3866|consensus
Probab=92.71 E-value=0.23 Score=35.20 Aligned_cols=61 Identities=18% Similarity=0.411 Sum_probs=44.6
Q ss_pred chhcccccCCCccccHHHHHHHHHH----h-CCCCCHHHHH-----------HHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAA----L-DEQLTPDQLD-----------EMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~----~-g~~~s~~ei~-----------~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
.-|.+.|.|++|+++..||..++.. + ...-.++++. .+++.+|.+.|..|+.. ||...--+
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtle-EFL~~t~~ 324 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLE-EFLNDTDN 324 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHH-HHHhhhhh
Confidence 3578889999999999999988754 2 1111222232 35777899999999999 99876655
No 79
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=92.31 E-value=0.14 Score=25.50 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 37 LDEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 37 i~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
+..++..+|.+++|.|++. +|...+...
T Consensus 2 ~~~~f~~~d~~~~g~l~~~-e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKDGDGTISAD-ELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCCCCCcCcHH-HHHHHHHHh
Confidence 5677889999999999999 999888764
No 80
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=92.24 E-value=0.14 Score=29.31 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=21.9
Q ss_pred hhcccccCCCccccHHHHHHHHHHhC
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALD 29 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g 29 (87)
-++.+|.|++|.|+.+|+..++..+.
T Consensus 58 i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 58 IMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 36678999999999999999887763
No 81
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=92.20 E-value=0.15 Score=29.30 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=21.8
Q ss_pred hhcccccCCCccccHHHHHHHHHHh
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAAL 28 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~ 28 (87)
-++.+|.|++|.|+.+|+..++..+
T Consensus 52 mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 52 KMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4667899999999999999988775
No 82
>KOG4666|consensus
Probab=92.18 E-value=0.13 Score=36.46 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=32.7
Q ss_pred hhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHH
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
.|+.|+.+-||++...+|.-+++.. ..+..-.+-.+++..+...+++|.|. +|.
T Consensus 301 afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf~~i~q~d~~ki~~~-~f~ 354 (412)
T KOG4666|consen 301 AFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLFPSIEQKDDPKIYAS-NFR 354 (412)
T ss_pred HHHhcccccccccchHHHHHHHHHh-cCcceeeccccchhhhcccCcceeHH-HHH
Confidence 3666677777777666665555442 23333344556666666667777777 666
No 83
>KOG4251|consensus
Probab=92.11 E-value=0.12 Score=35.46 Aligned_cols=63 Identities=13% Similarity=0.279 Sum_probs=49.8
Q ss_pred ccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcCCCCccccc
Q psy15708 7 QEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73 (87)
Q Consensus 7 ~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~~~~~~~~~ 73 (87)
.+|.|.+|.++.+||..++..........++..++.-.|.+++.+++.+ +.. ...+..+|..+
T Consensus 289 lIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~e-ell---~r~~~~~rSsL 351 (362)
T KOG4251|consen 289 LIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLE-ELL---ERDWLLARSSL 351 (362)
T ss_pred HhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHH-HHH---HHHhhhcccHH
Confidence 6799999999999999998777777788889999999999999999888 554 33444444433
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=92.01 E-value=0.11 Score=27.05 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=22.3
Q ss_pred cchhcccccCCCccccHHHHHHHHHHh
Q psy15708 2 DQDLDQEQINSHGYIPTSSLREILAAL 28 (87)
Q Consensus 2 ~~~f~~~D~~~~G~I~~~el~~~l~~~ 28 (87)
..-|+..|++++|.+..+|+..+++.+
T Consensus 24 ~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 24 RQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 456889999999999999999888764
No 85
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=91.54 E-value=0.15 Score=30.74 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=20.2
Q ss_pred hhcccccCCCccccHHHHHHHH
Q psy15708 4 DLDQEQINSHGYIPTSSLREIL 25 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l 25 (87)
-|+.+|.|++|.||.+|+...+
T Consensus 85 f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 85 FFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHCCCCCCCCCHHHHHHHH
Confidence 5778999999999999999988
No 86
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=91.19 E-value=0.43 Score=27.24 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=24.6
Q ss_pred HHHHHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 35 DQLDEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 35 ~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
..+..+|..+|.+++|.|+++ ++...+...
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~-el~~~l~~~ 39 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGA-QAKPILLKS 39 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHH-HHHHHHHHc
Confidence 345667888999999999999 998888663
No 87
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=91.13 E-value=0.23 Score=28.39 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.3
Q ss_pred hhcccccCCCccccHHHHHHHHHHh
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAAL 28 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~ 28 (87)
-++.+|.|++|.|+.+|+..++..+
T Consensus 57 ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 57 MMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4667899999999999999888765
No 88
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=91.06 E-value=0.089 Score=30.07 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=23.1
Q ss_pred hhcccccCCCccccHHHHHHHHHHhCCC
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALDEQ 31 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g~~ 31 (87)
-|+.+|.+++|.|+.+++..++..+++-
T Consensus 56 ~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 56 IMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4667899999999999999988876543
No 89
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=90.23 E-value=0.3 Score=27.81 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=20.8
Q ss_pred hhcccccCCCccccHHHHHHHHHHh
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAAL 28 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~ 28 (87)
-|+.+|.|++|.|+.+|+..++..+
T Consensus 56 m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 56 LMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3667899999999999998888765
No 90
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=89.53 E-value=0.38 Score=27.26 Aligned_cols=26 Identities=8% Similarity=0.189 Sum_probs=21.3
Q ss_pred chhcccccCCCccccHHHHHHHHHHh
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAAL 28 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~ 28 (87)
.-|..+|.+++|.|+.+++..++..+
T Consensus 55 ~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 55 KIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34677899999999999998888764
No 91
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=88.60 E-value=0.51 Score=24.46 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=21.5
Q ss_pred HHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 38 DEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 38 ~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
+.+|..+|.+++|.|+.+ |+...+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~-el~~~l~~~ 28 (67)
T cd00052 2 DQIFRSLDPDGDGLISGD-EARPFLGKS 28 (67)
T ss_pred hHHHHHhCCCCCCcCcHH-HHHHHHHHc
Confidence 456888899999999999 888777553
No 92
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=88.21 E-value=0.49 Score=27.45 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=22.8
Q ss_pred chhcccccCCCccccHHHHHHHHHHhC
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALD 29 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g 29 (87)
+-++.+|.|+||.|+.+|+-.++..+.
T Consensus 52 ~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 52 KIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 356788999999999999998887653
No 93
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=88.01 E-value=0.52 Score=26.66 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=21.2
Q ss_pred chhcccccCCCccccHHHHHHHHHHh
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAAL 28 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~ 28 (87)
+-|+.+|.+++|.|+.+++..++..+
T Consensus 56 ~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 56 KIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 34667899999999999998888765
No 94
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=87.56 E-value=0.77 Score=25.57 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCC--CCCCceecchHHHHHHhc
Q psy15708 35 DQLDEMIEEIDT--DASGTVDFDGEFDERQAA 64 (87)
Q Consensus 35 ~ei~~l~~~~d~--d~~g~I~~~~ef~~~~~~ 64 (87)
+++..+|..+|. +++|.|+.+ ||...+..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~-el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKK-ELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHH-HHHHHHHH
Confidence 457778999999 899999999 99988864
No 95
>KOG2562|consensus
Probab=86.63 E-value=2 Score=31.83 Aligned_cols=57 Identities=11% Similarity=0.247 Sum_probs=42.1
Q ss_pred hhcccccCCCccccHHHHHHHHHHh-------CC-CCC-HHHHHHHHHHhCCCCCCceecchHHHHH
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAAL-------DE-QLT-PDQLDEMIEEIDTDASGTVDFDGEFDER 61 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~-------g~-~~s-~~ei~~l~~~~d~d~~g~I~~~~ef~~~ 61 (87)
-|+.+|.+++|.++..|++.+.+.. +. .++ ++-+.+++..+.....++|+.. +|...
T Consensus 356 wFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLq-Dlk~s 421 (493)
T KOG2562|consen 356 WFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQ-DLKGS 421 (493)
T ss_pred heeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHH-HHhhc
Confidence 4889999999999999998876542 32 223 3445667777777788999999 88753
No 96
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=85.88 E-value=0.68 Score=33.46 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.4
Q ss_pred chhcccccCCCccccHHHHHHHHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAA 27 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~ 27 (87)
.-|+.+|.|++|.|+.+|+..++..
T Consensus 361 ~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 361 AVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4588999999999999999998865
No 97
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=85.78 E-value=2.6 Score=22.88 Aligned_cols=32 Identities=13% Similarity=0.324 Sum_probs=27.6
Q ss_pred ccccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy15708 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEID 45 (87)
Q Consensus 14 G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d 45 (87)
-.|+.+-++.++..+|..+|+..++.+.+.+.
T Consensus 30 Ppine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 35888899999999999999999999888753
No 98
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=85.65 E-value=1.3 Score=25.12 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=24.2
Q ss_pred HHHHHHHHHhC-CCCCC-ceecchHHHHHHhc
Q psy15708 35 DQLDEMIEEID-TDASG-TVDFDGEFDERQAA 64 (87)
Q Consensus 35 ~ei~~l~~~~d-~d~~g-~I~~~~ef~~~~~~ 64 (87)
..+..+|+.+| .+++| .|+.+ |+...+..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~-eL~~ll~~ 38 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKS-ELKELINN 38 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHH-HHHHHHHH
Confidence 35677899997 78999 69999 99988876
No 99
>PRK00523 hypothetical protein; Provisional
Probab=85.38 E-value=2.6 Score=23.40 Aligned_cols=31 Identities=10% Similarity=0.296 Sum_probs=27.7
Q ss_pred ccccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy15708 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEI 44 (87)
Q Consensus 14 G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~ 44 (87)
-.|+.+-++.++.++|..+|+..++++.+.+
T Consensus 38 Ppine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 38 PPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred cCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3588888999999999999999999998876
No 100
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=85.23 E-value=0.87 Score=29.44 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=45.8
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCH------------------------------------------------
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTP------------------------------------------------ 34 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~------------------------------------------------ 34 (87)
++...||.|+||.|..-|--.-++++|.++--
T Consensus 11 qHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~e 90 (174)
T PF05042_consen 11 QHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTE 90 (174)
T ss_pred hhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccC
Confidence 45678999999999999987777776654311
Q ss_pred -----HHHHHHHHHhCCCCCCceecchHHHHHHhcCC
Q psy15708 35 -----DQLDEMIEEIDTDASGTVDFDGEFDERQAAGS 66 (87)
Q Consensus 35 -----~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~~ 66 (87)
...+++|..++..+.+.+++. |..+++....
T Consensus 91 GrFvp~kFe~iF~kya~~~~d~LT~~-E~~~m~~~nr 126 (174)
T PF05042_consen 91 GRFVPQKFEEIFSKYAKTGPDALTLR-ELWRMLKGNR 126 (174)
T ss_pred CcCCHHHHHHHHHHhCCCCCCCcCHH-HHHHHHHhcc
Confidence 334567777777667778888 8887777754
No 101
>KOG0998|consensus
Probab=85.09 E-value=0.29 Score=38.56 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=50.6
Q ss_pred hhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
.|...|.+.+|.|+..+....+.. ..++...+..+|...+..+.|++++. +|.-.++..
T Consensus 288 if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~-ef~~~~~~~ 346 (847)
T KOG0998|consen 288 IFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKD-EFALAMHLL 346 (847)
T ss_pred HHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCccccc-ccchhhhhh
Confidence 477889999999999999988877 45677889999999999999999999 888666554
No 102
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=84.86 E-value=0.8 Score=27.77 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 31 QLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 31 ~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
.+++++.+.++.++..|..|.|.|. ||...+..
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~-eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQ-EFLSKFSS 35 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHH-HHHHHT--
T ss_pred cccHHHhhhhhhhCcCCccCCEeHH-HHHHHccc
Confidence 3689999999999999999999999 88877663
No 103
>KOG4666|consensus
Probab=83.86 E-value=2.7 Score=30.11 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=42.4
Q ss_pred chhcccccCCCccccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCceecc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAAL-DEQLTPDQLDEMIEEIDTDASGTVDFD 55 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~-g~~~s~~ei~~l~~~~d~d~~g~I~~~ 55 (87)
.-|.+||.+++|.++..+....+.-+ +...+..-++-.++.++.+.||.+.-.
T Consensus 263 ~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~ 316 (412)
T KOG4666|consen 263 PTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEH 316 (412)
T ss_pred hhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchH
Confidence 45889999999999988776655443 566778888999999999999987655
No 104
>PRK01844 hypothetical protein; Provisional
Probab=82.57 E-value=4.1 Score=22.64 Aligned_cols=30 Identities=10% Similarity=0.347 Sum_probs=27.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy15708 15 YIPTSSLREILAALDEQLTPDQLDEMIEEI 44 (87)
Q Consensus 15 ~I~~~el~~~l~~~g~~~s~~ei~~l~~~~ 44 (87)
.|+.+-++.++..+|..+|+..++++.+.+
T Consensus 38 pine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 38 PINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 588888999999999999999999998876
No 105
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.52 E-value=5.3 Score=22.09 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=28.0
Q ss_pred CccccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy15708 13 HGYIPTSSLREILAALDEQLTPDQLDEMIEEID 45 (87)
Q Consensus 13 ~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d 45 (87)
+-.|+.+-++.++.++|..+|+..++++++.+-
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 345888889999999999999999999988754
No 106
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=81.27 E-value=2.9 Score=22.54 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=32.6
Q ss_pred CCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC
Q psy15708 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDA 48 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~ 48 (87)
.++.++...+...|...|..++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567899999999998899999999999999998765
No 107
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=79.50 E-value=0.29 Score=26.96 Aligned_cols=48 Identities=21% Similarity=0.436 Sum_probs=29.2
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-------CCCceecchHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTD-------ASGTVDFDGEFD 59 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d-------~~g~I~~~~ef~ 59 (87)
+.|+.+ .++.++|+..+|+..|. .++++-++..|..- ..|.++|. .|+
T Consensus 10 ~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~-~f~ 64 (69)
T PF08726_consen 10 EAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYE-SFT 64 (69)
T ss_dssp HHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECH-HHH
T ss_pred HHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHH-HHH
Confidence 467777 66779999999988762 22234444444322 22678898 444
No 108
>KOG0038|consensus
Probab=79.35 E-value=1.6 Score=27.81 Aligned_cols=55 Identities=9% Similarity=0.156 Sum_probs=30.3
Q ss_pred ccccCCCccccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCceecchHHHHHH
Q psy15708 7 QEQINSHGYIPTSSLREILAALDE-QLTPDQLDEMIEEIDTDASGTVDFDGEFDERQ 62 (87)
Q Consensus 7 ~~D~~~~G~I~~~el~~~l~~~g~-~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~ 62 (87)
.|-.+|.|.++.+++..++.-+.. .+.+-.+.-.|+-+|.|+|+.|--+ +....+
T Consensus 79 ~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~-DL~~~l 134 (189)
T KOG0038|consen 79 VFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHD-DLEKTL 134 (189)
T ss_pred HhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHH-HHHHHH
Confidence 455666777777766666554432 2233334445566666666666555 444333
No 109
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=78.67 E-value=7.4 Score=21.23 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy15708 16 IPTSSLREILAALDEQLTPDQLDEMIEEID 45 (87)
Q Consensus 16 I~~~el~~~l~~~g~~~s~~ei~~l~~~~d 45 (87)
++.+++..+++..|..++.+++..+++.-+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~ 43 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKED 43 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCC
Confidence 556788899999899999999999998844
No 110
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=77.45 E-value=5.7 Score=25.76 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=24.9
Q ss_pred ccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy15708 9 QINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEID 45 (87)
Q Consensus 9 D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d 45 (87)
..+.+|+++.++|...+..-+..++.+++.+++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4578999999999998887777789999999998844
No 111
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=77.05 E-value=4.6 Score=16.99 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=11.4
Q ss_pred ccCCCccccHHHHHHH
Q psy15708 9 QINSHGYIPTSSLREI 24 (87)
Q Consensus 9 D~~~~G~I~~~el~~~ 24 (87)
|.|++|.|+.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 6788999988877543
No 112
>KOG0751|consensus
Probab=76.75 E-value=9.5 Score=28.98 Aligned_cols=56 Identities=13% Similarity=0.213 Sum_probs=40.8
Q ss_pred cccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcCC
Q psy15708 8 EQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGS 66 (87)
Q Consensus 8 ~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~~ 66 (87)
-|..+||.|+.+|++. ++.+-. .++..-...|.-+|..++|.++|+ +|.+......
T Consensus 83 aD~tKDglisf~eF~a-fe~~lC-~pDal~~~aFqlFDr~~~~~vs~~-~~~~if~~t~ 138 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRA-FESVLC-APDALFEVAFQLFDRLGNGEVSFE-DVADIFGQTN 138 (694)
T ss_pred hhhcccccccHHHHHH-HHhhcc-CchHHHHHHHHHhcccCCCceehH-HHHHHHhccc
Confidence 3667889999999854 333222 235555677888999999999999 9988887754
No 113
>KOG0035|consensus
Probab=75.39 E-value=5 Score=32.05 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=42.5
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCH-----HHHHHHHHHhCCCCCCceecchHHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTP-----DQLDEMIEEIDTDASGTVDFDGEFDE 60 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~-----~ei~~l~~~~d~d~~g~I~~~~ef~~ 60 (87)
+-|..+++...|..+.+++..++..+|...-+ .++..++...+.+..|+++|. +|..
T Consensus 751 Ale~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~-e~~d 812 (890)
T KOG0035|consen 751 ALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLL-EFED 812 (890)
T ss_pred HHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHH-HHHh
Confidence 35778888889999999999999999977664 233344445566666899999 7763
No 114
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=74.87 E-value=10 Score=20.11 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=26.6
Q ss_pred ccccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy15708 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEI 44 (87)
Q Consensus 14 G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~ 44 (87)
-.++.+|+...+..++..++..++..+|..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4578899999999999899999998888874
No 115
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=74.23 E-value=2.5 Score=24.91 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=19.9
Q ss_pred chhcccccCCCccccHHHHHHHHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAA 27 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~ 27 (87)
+-|.+.|.+++|+++.+|+.-+|.-
T Consensus 47 ~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 47 QIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4577889999999999999887643
No 116
>KOG0751|consensus
Probab=73.95 E-value=3.5 Score=31.16 Aligned_cols=54 Identities=17% Similarity=0.378 Sum_probs=40.2
Q ss_pred cchhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhC-CCCCCceecc
Q psy15708 2 DQDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEID-TDASGTVDFD 55 (87)
Q Consensus 2 ~~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d-~d~~g~I~~~ 55 (87)
.+.|+..|+.++|.|+.-+++.++.....++....++..+-... .+...+++|.
T Consensus 182 ~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~ 236 (694)
T KOG0751|consen 182 EQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFS 236 (694)
T ss_pred HHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchH
Confidence 57788999999999999999999888777777777777665543 2233456655
No 117
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=70.20 E-value=12 Score=24.19 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=29.6
Q ss_pred ccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy15708 9 QINSHGYIPTSSLREILAALDEQLTPDQLDEMIEE 43 (87)
Q Consensus 9 D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~ 43 (87)
--|.+|+++.++|...++.-+..++.+++++++..
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 35789999999999988765667899999999887
No 118
>KOG1029|consensus
Probab=69.85 E-value=11 Score=30.16 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=44.7
Q ss_pred hhcccc--cCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 4 DLDQEQ--INSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 4 ~f~~~D--~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
++..|+ +-+.|+|+-..-+.+|-..| ++..-+-.+|.-.|.|+||+++-. ||-.++.-
T Consensus 18 ~~~qF~~Lkp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~-EfSIAmkL 77 (1118)
T KOG1029|consen 18 HDAQFGQLKPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIR-EFSIAMKL 77 (1118)
T ss_pred HHHHHhccCCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHH-HHHHHHHH
Confidence 344454 34779999999888876655 455667788999999999999999 99876654
No 119
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=69.82 E-value=19 Score=21.63 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=35.2
Q ss_pred CCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHH
Q psy15708 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDE 60 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~ 60 (87)
++..++.+++..+|...|..+....+..+++.+.. .+.+ |.+.
T Consensus 16 G~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~-ELIa 58 (112)
T PTZ00373 16 GNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPH-ELIA 58 (112)
T ss_pred CCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHH-HHHH
Confidence 45568999999999999999999999999998852 3666 6665
No 120
>KOG4347|consensus
Probab=68.50 E-value=6.7 Score=30.33 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=36.5
Q ss_pred hhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecc
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFD 55 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~ 55 (87)
-|+.+|.+++|.++..++...|..+-..--.+.+.-+++-++.+++ ..+-+
T Consensus 560 lF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 560 LFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccc
Confidence 4778888888888888888877776544445556666777777777 66555
No 121
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=67.50 E-value=7.4 Score=22.15 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=36.7
Q ss_pred CCccccHHHHHHHHHHhC--CCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 12 SHGYIPTSSLREILAALD--EQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g--~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
.||.++..|...+-.-+. ..++.++...++..+........++. +|...+...
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~ 66 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLY-EFTSLIKEH 66 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHh
Confidence 478999888766543321 35678888888877765555567888 888777653
No 122
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=67.23 E-value=16 Score=19.85 Aligned_cols=22 Identities=9% Similarity=0.267 Sum_probs=19.9
Q ss_pred cccccCCCccccHHHHHHHHHH
Q psy15708 6 DQEQINSHGYIPTSSLREILAA 27 (87)
Q Consensus 6 ~~~D~~~~G~I~~~el~~~l~~ 27 (87)
++||...+.+|+.+++..+++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4789999999999999999876
No 123
>KOG1707|consensus
Probab=65.13 E-value=5.7 Score=30.44 Aligned_cols=57 Identities=11% Similarity=0.198 Sum_probs=37.6
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCC-CH-HHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQL-TP-DQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~-s~-~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
.-|..||.|+||.++..|+..++...+..+ +. .+.+. --.+..|.++++ -|...|.-
T Consensus 319 ~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~----t~~~~~G~ltl~-g~l~~WsL 377 (625)
T KOG1707|consen 319 DVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS----TVKNERGWLTLN-GFLSQWSL 377 (625)
T ss_pred HHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc----ceecccceeehh-hHHHHHHH
Confidence 358899999999999999999998875432 10 01111 112256888998 66655543
No 124
>KOG2871|consensus
Probab=65.06 E-value=8 Score=28.20 Aligned_cols=52 Identities=13% Similarity=0.339 Sum_probs=36.8
Q ss_pred hhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHH-HhCCCCCCceecc
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIE-EIDTDASGTVDFD 55 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~-~~d~d~~g~I~~~ 55 (87)
.|+.+|+.++|+|+..-++.+|..++..+++.+.-.+.+ .+|..+-|.|=..
T Consensus 314 ~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~ 366 (449)
T KOG2871|consen 314 NFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLE 366 (449)
T ss_pred hhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEec
Confidence 488899999999999999999999885555544333333 3565555555444
No 125
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=62.47 E-value=27 Score=19.97 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=29.3
Q ss_pred ccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Q psy15708 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTD 47 (87)
Q Consensus 14 G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d 47 (87)
..|+..||.++-+..+.+++.++++.++.-+-.+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGK 46 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 3588999999999999999999999998887544
No 126
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=61.53 E-value=33 Score=20.60 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=35.3
Q ss_pred CCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHH
Q psy15708 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDER 61 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~ 61 (87)
++..++.+++..+|...|..+....+..+++.+.. .+.. |.+..
T Consensus 14 g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~-eLIa~ 57 (113)
T PLN00138 14 GNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDIT-ELIAS 57 (113)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHH-HHHHh
Confidence 45569999999999999999999999999988852 3666 66643
No 127
>KOG3449|consensus
Probab=61.37 E-value=23 Score=21.30 Aligned_cols=51 Identities=14% Similarity=0.375 Sum_probs=38.9
Q ss_pred cccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 8 EQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 8 ~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
++.-++-..+..+++.+|.+.|.....+.++.++.++. |+ +.+ |.+...+.
T Consensus 10 ~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~-ElIA~G~e 60 (112)
T KOG3449|consen 10 AVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIE-ELIAAGRE 60 (112)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHH-HHHHHhHH
Confidence 34445556788999999999999999999999999975 33 556 66655444
No 128
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=61.11 E-value=11 Score=23.45 Aligned_cols=43 Identities=9% Similarity=0.346 Sum_probs=22.7
Q ss_pred ccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-------CCCCceecchHHH
Q psy15708 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDT-------DASGTVDFDGEFD 59 (87)
Q Consensus 14 G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~-------d~~g~I~~~~ef~ 59 (87)
+.++..|+.++=+-+ ..+...+..+++++.. +..+.|+|+ .|.
T Consensus 6 ~~lsp~eF~qLq~y~--eys~kklkdvl~eF~~~g~~~~~~~~~~Id~e-gF~ 55 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYS--EYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYE-GFK 55 (138)
T ss_dssp S-S-HHHHHHHHHHH--HH----HHHHHHHH-HTSGGGGGEETTEE-HH-HHH
T ss_pred eccCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCcccccCCCCCcCHH-HHH
Confidence 567888876654332 1255578888888743 334689999 766
No 129
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=60.54 E-value=26 Score=19.16 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC----CCCCceecc
Q psy15708 16 IPTSSLREILAALDEQLTPDQLDEMIEEIDT----DASGTVDFD 55 (87)
Q Consensus 16 I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~----d~~g~I~~~ 55 (87)
-+-+||...|...|+.+++..+.+-++++.. +++|..-|.
T Consensus 20 ~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~~vKv~~~~g~~~Y~ 63 (70)
T PF01316_consen 20 SSQEELVELLEEEGIEVTQATISRDLKELGAVKVPDGNGKYRYV 63 (70)
T ss_dssp -SHHHHHHHHHHTT-T--HHHHHHHHHHHT-EEEECTTSSEEEE
T ss_pred CCHHHHHHHHHHcCCCcchhHHHHHHHHcCcEEeeCCCCCEEEE
Confidence 4567899999999999999999999998742 445554443
No 130
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=60.42 E-value=27 Score=19.72 Aligned_cols=28 Identities=7% Similarity=0.251 Sum_probs=21.1
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy15708 16 IPTSSLREILAALDEQLTPDQLDEMIEE 43 (87)
Q Consensus 16 I~~~el~~~l~~~g~~~s~~ei~~l~~~ 43 (87)
|+.+++..+.+-..+.++++++..+..+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4677888887777788898888766554
No 131
>PLN02952 phosphoinositide phospholipase C
Probab=60.29 E-value=38 Score=26.12 Aligned_cols=51 Identities=10% Similarity=0.152 Sum_probs=37.6
Q ss_pred CCccccHHHHHHHHHHhCC--CCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 12 SHGYIPTSSLREILAALDE--QLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~--~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
+.|.++..++..+.+.+.. ..+..+|..+|..+..++ +.|+.+ +|..=+..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~-~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGAD-QLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHH-HHHHHHHH
Confidence 4589999999877776642 336789999999986544 578998 77744443
No 132
>KOG1954|consensus
Probab=60.15 E-value=14 Score=27.28 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=37.4
Q ss_pred CCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHH
Q psy15708 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDER 61 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~ 61 (87)
-+|+|+...-+..|-. -.+++.-+-++|+-.|.|.||.++-+ ||.-+
T Consensus 456 ~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~e-efala 502 (532)
T KOG1954|consen 456 VNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDE-EFALA 502 (532)
T ss_pred cCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHH-HHHHH
Confidence 3688887777666544 35778888999999999999999999 88743
No 133
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=57.73 E-value=15 Score=20.45 Aligned_cols=34 Identities=24% Similarity=0.690 Sum_probs=21.9
Q ss_pred CCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Q psy15708 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTD 47 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d 47 (87)
..|+|+..++..+|.. ..++.+.+..++..+...
T Consensus 18 ~~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 18 KKGYLTYDEINDALPE--DDLDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHSS-BHHHHHHH-S---S---HHHHHHHHHHHHTT
T ss_pred hcCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHHHC
Confidence 4689999999999874 347778888888876533
No 134
>KOG0041|consensus
Probab=57.63 E-value=13 Score=24.96 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 35 DQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 35 ~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
.++..+|+.+|.+.||.|++. |...++..
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~-ELK~mmEK 127 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLM-ELKRMMEK 127 (244)
T ss_pred HHHHHHHHHhcccccccccHH-HHHHHHHH
Confidence 345678999999999999999 87766654
No 135
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=57.25 E-value=34 Score=19.33 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=23.1
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy15708 15 YIPTSSLREILAALDEQLTPDQLDEMIEE 43 (87)
Q Consensus 15 ~I~~~el~~~l~~~g~~~s~~ei~~l~~~ 43 (87)
.|+.++++.+.+-..+.++++++..+..+
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~ 30 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQ 30 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 47888999888888889999888776554
No 136
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=56.90 E-value=40 Score=20.08 Aligned_cols=48 Identities=15% Similarity=0.347 Sum_probs=38.5
Q ss_pred CCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 11 ~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
-++..++.+++..+++..|..+....+..+++.+.. .+.. +.+.....
T Consensus 13 ~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~-eLIa~g~~ 60 (109)
T cd05833 13 GGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVE-ELIAAGKE 60 (109)
T ss_pred cCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHH-HHHHHhHh
Confidence 455679999999999999999999999999988752 4667 77766555
No 137
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=55.55 E-value=32 Score=20.45 Aligned_cols=28 Identities=32% Similarity=0.592 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy15708 17 PTSSLREILAALDEQLTPDQLDEMIEEI 44 (87)
Q Consensus 17 ~~~el~~~l~~~g~~~s~~ei~~l~~~~ 44 (87)
+.+|++.++.++...+++++++.++..+
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~l 107 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDIV 107 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3566666666666666777777666543
No 138
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=55.30 E-value=30 Score=20.71 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=31.9
Q ss_pred cccccCCCccccHHHHHHHHHHh----------CCCCCHHHHHHHHHHhCCCCCCce
Q psy15708 6 DQEQINSHGYIPTSSLREILAAL----------DEQLTPDQLDEMIEEIDTDASGTV 52 (87)
Q Consensus 6 ~~~D~~~~G~I~~~el~~~l~~~----------g~~~s~~ei~~l~~~~d~d~~g~I 52 (87)
++||...+-+|+.++++.+++.- |..++..-+-+++-+....+...+
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~l 66 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVL 66 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCC
Confidence 47899999999999999998762 344555555566666554444333
No 139
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=55.25 E-value=36 Score=20.08 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=30.4
Q ss_pred chhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC---CCCCceecchHHH
Q psy15708 3 QDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDT---DASGTVDFDGEFD 59 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~---d~~g~I~~~~ef~ 59 (87)
++|+.+-. +|+++..++..++ |..-+.+-+.++|..+.. -....|+.+ |+.
T Consensus 34 ~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~-eL~ 87 (100)
T PF08414_consen 34 KRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKD-ELK 87 (100)
T ss_dssp HHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HH-HHH
T ss_pred HHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHH-HHH
Confidence 45666655 8899999888877 555567777777765421 124567777 665
No 140
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=54.69 E-value=23 Score=18.79 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=21.7
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy15708 15 YIPTSSLREILAALDEQLTPDQLDEMI 41 (87)
Q Consensus 15 ~I~~~el~~~l~~~g~~~s~~ei~~l~ 41 (87)
.|+.+++..+|+.....++.+++.+..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 488999999999988889988887643
No 141
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=53.93 E-value=36 Score=21.15 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=34.9
Q ss_pred CCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC----CCCCceecc
Q psy15708 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDT----DASGTVDFD 55 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~----d~~g~I~~~ 55 (87)
.....+-+||...|+..|..+++..+.+.++++.. +++|.--|.
T Consensus 13 ~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elglvk~~~~~g~~~Y~ 60 (146)
T TIGR01529 13 EEKISTQEELVALLKAEGIEVTQATVSRDLRELGAVKVRDEDGSYVYS 60 (146)
T ss_pred cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCCEEEECCCCcEEEe
Confidence 44567889999999999999999999999998753 356655554
No 142
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=53.73 E-value=28 Score=21.78 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q psy15708 16 IPTSSLREILAALDEQLTPDQLDEMIEEIDT 46 (87)
Q Consensus 16 I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~ 46 (87)
.+.+++..+...+..++|++|+..+++.++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 3577888887777788999999999998875
No 143
>PRK00441 argR arginine repressor; Provisional
Probab=52.82 E-value=36 Score=21.29 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=35.9
Q ss_pred CCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC----CCCCceecc
Q psy15708 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDT----DASGTVDFD 55 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~----d~~g~I~~~ 55 (87)
..+..+.+||...|+..|+..|+..+.+-++++.. +++|..-|.
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~lvKv~~~~G~~~Y~ 62 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELKLIKVLSNDGKYKYA 62 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcCcEEeECCCCCEEEE
Confidence 45678899999999999999999999999998752 466766665
No 144
>KOG0040|consensus
Probab=52.17 E-value=32 Score=29.90 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=36.2
Q ss_pred hcccccCCCccccHHHHHHHHHHh-CC-CCCHHHHHHHHHHhCCCCCCceecc
Q psy15708 5 LDQEQINSHGYIPTSSLREILAAL-DE-QLTPDQLDEMIEEIDTDASGTVDFD 55 (87)
Q Consensus 5 f~~~D~~~~G~I~~~el~~~l~~~-g~-~~s~~ei~~l~~~~d~d~~g~I~~~ 55 (87)
.+.+|++.+|+|+.+++..+|-+- .. -.+.++|+..|+.++. +.-.|+-.
T Consensus 2302 ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke 2353 (2399)
T KOG0040|consen 2302 LDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKE 2353 (2399)
T ss_pred HHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHH
Confidence 457899999999999998877442 22 3566799999999987 33344433
No 145
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.11 E-value=29 Score=21.00 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy15708 17 PTSSLREILAALDEQLTPDQLDEMIEEI 44 (87)
Q Consensus 17 ~~~el~~~l~~~g~~~s~~ei~~l~~~~ 44 (87)
+..|++.++..-+..+++++++.++.-.
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 4667788877777777888877776544
No 146
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=50.64 E-value=13 Score=22.64 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=16.6
Q ss_pred hcccccCCCccccHHHHHHHHHHh
Q psy15708 5 LDQEQINSHGYIPTSSLREILAAL 28 (87)
Q Consensus 5 f~~~D~~~~G~I~~~el~~~l~~~ 28 (87)
+..||++++|.|+.-+++.++-.+
T Consensus 103 l~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 103 LNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHhCCCCCCeeehhHHHHHHHHh
Confidence 457899999999999998877543
No 147
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=50.56 E-value=51 Score=19.45 Aligned_cols=43 Identities=14% Similarity=0.416 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 16 IPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 16 I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
|+.+++..+|...|..++.+.+..+++.+. ..+.+ +.+.....
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~-eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNID-EVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHH-HHHHHHHh
Confidence 999999999999999999999999999874 24667 77766654
No 148
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=47.83 E-value=40 Score=18.81 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCce
Q psy15708 18 TSSLREILAALDEQLTPDQLDEMIEEIDTDASGTV 52 (87)
Q Consensus 18 ~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I 52 (87)
...+..++..+|++-+.+.|+..+.......+-.+
T Consensus 5 ~h~l~~LF~QLGL~~~~~~I~~FI~~H~L~~~~~L 39 (74)
T PF10982_consen 5 QHTLSNLFAQLGLDSSDEAIEAFIETHQLPADVHL 39 (74)
T ss_dssp -THHHHHHHHHTS---HHHHHHHHHHS---TTS-S
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCcc
Confidence 45688899999999999999999998765544333
No 149
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=47.01 E-value=36 Score=18.63 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=12.0
Q ss_pred CCccccHHHHHHHHHH
Q psy15708 12 SHGYIPTSSLREILAA 27 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~ 27 (87)
..|++..+|+..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 3578888888888755
No 150
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=43.80 E-value=66 Score=21.74 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=31.5
Q ss_pred cCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy15708 10 INSHGYIPTSSLREILAALDEQLTPDQLDEMIEEID 45 (87)
Q Consensus 10 ~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d 45 (87)
-+++|.++...|..-+.++...++..|+..+-+.+.
T Consensus 162 G~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL~ 197 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRLR 197 (224)
T ss_pred cCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHHH
Confidence 468899999999999999999999999988877654
No 151
>PRK03341 arginine repressor; Provisional
Probab=43.70 E-value=51 Score=21.10 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=34.7
Q ss_pred CCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC----CCCCce-ecc
Q psy15708 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDT----DASGTV-DFD 55 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~----d~~g~I-~~~ 55 (87)
..+..+.+||...|+..|+..++..+.+-++++.. +.+|.. -|.
T Consensus 26 ~~~i~tQ~eL~~~L~~~Gi~vTQaTiSRDl~eL~~~Kv~~~~G~~~~Y~ 74 (168)
T PRK03341 26 RQSVRSQAELAALLADEGIEVTQATLSRDLDELGAVKLRGADGGLGVYV 74 (168)
T ss_pred HCCCccHHHHHHHHHHcCCcccHHHHHHHHHHhcCEeeecCCCCEEEEE
Confidence 35667788999999999999999999999998753 455665 454
No 152
>KOG2301|consensus
Probab=43.54 E-value=8.2 Score=32.87 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=49.2
Q ss_pred hhcccccCCCccccHHHHHHHHHHhCCCC----CHHHHHHHHHHhCCCCCCceecchHHHHHHhcCCCCcccccc
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALDEQL----TPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKIS 74 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g~~~----s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~~~~~~~~~~ 74 (87)
.+..||++..|+|...++..+++.+..++ .... +.+--++...+++.|+|. +-.-++...++..++...
T Consensus 1422 vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~-d~L~aL~~r~l~i~~~~~ 1494 (1592)
T KOG2301|consen 1422 AWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCL-DILFALTKRVLGIKKELD 1494 (1592)
T ss_pred HHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehh-hHHHHHHHHhhccccccc
Confidence 45789999999999999999999875332 2222 333335666788999999 877777776665555433
No 153
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=43.06 E-value=34 Score=15.84 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=14.1
Q ss_pred cccHHHHHHHHHHhCCCCC
Q psy15708 15 YIPTSSLREILAALDEQLT 33 (87)
Q Consensus 15 ~I~~~el~~~l~~~g~~~s 33 (87)
.++..||+..++..|++.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 4567889999988887655
No 154
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=42.65 E-value=37 Score=15.55 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=14.9
Q ss_pred cccHHHHHHHHHHhCCCCC
Q psy15708 15 YIPTSSLREILAALDEQLT 33 (87)
Q Consensus 15 ~I~~~el~~~l~~~g~~~s 33 (87)
.++..+|+..++..|++.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4678889999988887654
No 155
>KOG4004|consensus
Probab=42.62 E-value=12 Score=25.11 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=35.9
Q ss_pred hhccccc-CCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHH
Q psy15708 4 DLDQEQI-NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 4 ~f~~~D~-~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
+|-.+|. --+|++|-.||.-+-.. +.+-+.=+..+|..+|.|+||.|+.+ ||.
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap--~ipme~c~~~f~e~cd~~nd~~ial~-ew~ 245 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAP--LIPMEHCTTRFFETCDLDNDKYIALD-EWA 245 (259)
T ss_pred eeccccCCCccccccccccccccCC--cccHHhhchhhhhcccCCCCCceeHH-Hhh
Confidence 3556664 35899998887543211 11223446678889999999999999 665
No 156
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=41.69 E-value=70 Score=18.49 Aligned_cols=29 Identities=10% Similarity=0.270 Sum_probs=22.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy15708 15 YIPTSSLREILAALDEQLTPDQLDEMIEE 43 (87)
Q Consensus 15 ~I~~~el~~~l~~~g~~~s~~ei~~l~~~ 43 (87)
.|+.++++++.+-..+.+++++++.+..+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~ 30 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQ 30 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHH
Confidence 57888888887777788898888766554
No 157
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=39.82 E-value=61 Score=20.40 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=22.3
Q ss_pred hhcccccCCCccccHHHHHHHHH----HhCCCCCHHH
Q psy15708 4 DLDQEQINSHGYIPTSSLREILA----ALDEQLTPDQ 36 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~----~~g~~~s~~e 36 (87)
+....|.++.+|++.++|+.++= .++..++-++
T Consensus 74 rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P~Ee 110 (148)
T PF12486_consen 74 RLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVPLEE 110 (148)
T ss_pred HHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCCHHH
Confidence 44566788888999999998753 3444444443
No 158
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=39.52 E-value=11 Score=22.54 Aligned_cols=52 Identities=21% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCccccHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 12 SHGYIPTSSLREILAAL--DEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~--g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
-||.|+..|...+...+ ...++..+...++..++......+++. +|+..+..
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~ 89 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLE-ELLRELRD 89 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHH-HHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHH-HHHHHHHH
Confidence 47889988887665544 234556666666666554434456677 77666555
No 159
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=39.36 E-value=32 Score=20.83 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=24.8
Q ss_pred CccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Q psy15708 13 HGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTD 47 (87)
Q Consensus 13 ~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d 47 (87)
-|.--.++|++-++.+|..++..|+-+.+.++-.|
T Consensus 33 Yg~q~Ld~lr~EFk~~Gy~P~hsEvYraLHeL~~d 67 (122)
T PF02334_consen 33 YGLQLLDELRSEFKPLGYRPNHSEVYRALHELVDD 67 (122)
T ss_dssp BCTCHHHHHHHHHTTTT----HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhh
Confidence 35566789999999999999999998888776544
No 160
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=39.30 E-value=1.1e+02 Score=19.93 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=25.2
Q ss_pred CCccccHHHHHHHHHHhCC----CCCHHHHHHHHHH
Q psy15708 12 SHGYIPTSSLREILAALDE----QLTPDQLDEMIEE 43 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~----~~s~~ei~~l~~~ 43 (87)
.+|....+.+..++.+.+. .++..|+..|++.
T Consensus 89 ~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 89 TEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 5678888889999887643 5788888888876
No 161
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=38.14 E-value=26 Score=19.17 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHh
Q psy15708 16 IPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQA 63 (87)
Q Consensus 16 I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~ 63 (87)
++...|-.++.. .++.+.+..+...++.=..++|+-+ ||+..++
T Consensus 9 ~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~-~fvr~lR 52 (70)
T PF12174_consen 9 MPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISRE-EFVRKLR 52 (70)
T ss_pred ccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHH-HHHHHHH
Confidence 454555555544 5666777777776665567789999 7774443
No 162
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=37.19 E-value=51 Score=19.23 Aligned_cols=8 Identities=38% Similarity=0.526 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy15708 35 DQLDEMIE 42 (87)
Q Consensus 35 ~ei~~l~~ 42 (87)
.+++.++.
T Consensus 88 ~El~~ii~ 95 (117)
T PF03874_consen 88 VELRAIIE 95 (117)
T ss_dssp HHHHHHST
T ss_pred HHHHHHHH
Confidence 33333333
No 163
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=37.16 E-value=88 Score=18.28 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=19.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHH
Q psy15708 20 SLREILAALDEQLTPDQLDEMIEE 43 (87)
Q Consensus 20 el~~~l~~~g~~~s~~ei~~l~~~ 43 (87)
.+...|...|+++|+++++.+++.
T Consensus 76 ~v~~~L~~~gi~~t~~~i~~~IEa 99 (108)
T PF09682_consen 76 YVKERLKKKGIKVTDEQIEGAIEA 99 (108)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH
Confidence 455667788999999999888765
No 164
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=37.10 E-value=92 Score=18.52 Aligned_cols=43 Identities=16% Similarity=0.365 Sum_probs=34.5
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHh
Q psy15708 15 YIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQA 63 (87)
Q Consensus 15 ~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~ 63 (87)
.|+.+++..+|...|..+....+..+++.+. .++.+ +.+....
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~-----GkdIe-ElI~~a~ 58 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE-----DVNIE-EAIKKAA 58 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHH-HHHHhcc
Confidence 7999999999999999999999999988874 24666 6664433
No 165
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=36.71 E-value=51 Score=15.43 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=11.7
Q ss_pred cHHHHHHHHHHhCCCCC
Q psy15708 17 PTSSLREILAALDEQLT 33 (87)
Q Consensus 17 ~~~el~~~l~~~g~~~s 33 (87)
+..+|+..|..-|+..+
T Consensus 5 s~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 45778888887776543
No 166
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=36.61 E-value=96 Score=18.60 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=37.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 15 YIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 15 ~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
.|+.+.|+.+++..|..+.+..++.++..+.. ++.+ |.+......
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg-----~~id-E~i~~~~~~ 60 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALEG-----VDID-EVIKNAAEA 60 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC-----CCHH-HHHHHhccc
Confidence 79999999999999999999999999988762 4777 777665553
No 167
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=36.34 E-value=1.1e+02 Score=21.66 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=18.9
Q ss_pred CccccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy15708 13 HGYIPTSSLREILAALDEQLTPDQLDEMIEEID 45 (87)
Q Consensus 13 ~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d 45 (87)
.|.|+.+|-...++......+.+.++.+++.++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg 332 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG 332 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC
Confidence 466666666666655443444555666666654
No 168
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=36.23 E-value=58 Score=15.97 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=12.0
Q ss_pred cHHHHHHHHHHhCCCCCHHHH
Q psy15708 17 PTSSLREILAALDEQLTPDQL 37 (87)
Q Consensus 17 ~~~el~~~l~~~g~~~s~~ei 37 (87)
+.+++..+.+..|..++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 445555566666666665543
No 169
>KOG3341|consensus
Probab=36.04 E-value=1e+02 Score=21.02 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=30.1
Q ss_pred CCccccHHHHHH-HHHHhCC---CCCHHHHHHHHHHhCCCCCCc
Q psy15708 12 SHGYIPTSSLRE-ILAALDE---QLTPDQLDEMIEEIDTDASGT 51 (87)
Q Consensus 12 ~~G~I~~~el~~-~l~~~g~---~~s~~ei~~l~~~~d~d~~g~ 51 (87)
+.|.|+.+|++. ++...+. .++++++-+.++.+..-++|-
T Consensus 113 nGGlislqel~~~l~~~R~~~~e~vt~dD~lrAi~kLk~LG~gF 156 (249)
T KOG3341|consen 113 NGGLISLQELCNHLLQRRKKDHEAVTEDDLLRAIDKLKVLGSGF 156 (249)
T ss_pred cCCeeeHHHHHHHHHHHhcccchhccHHHHHHHHHHhhccCCCe
Confidence 457999999988 4544443 388899988888887777763
No 170
>KOG0998|consensus
Probab=35.91 E-value=22 Score=28.38 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=47.9
Q ss_pred cchhcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 2 DQDLDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 2 ~~~f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
.+.|+.+|..++|.|+..+...++..-| +...-+-++|...|..+-|.++.. +|...++..
T Consensus 14 ~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q-~f~~~lrlv 74 (847)
T KOG0998|consen 14 DQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQ-GFYAALRLV 74 (847)
T ss_pred HHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccc-cccccchHh
Confidence 3678999999999999998888887654 455556677888888888889888 887666653
No 171
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=34.47 E-value=75 Score=16.72 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=19.0
Q ss_pred cccHHHHHHHHHHhCC----CCCHHHHHHHHHH
Q psy15708 15 YIPTSSLREILAALDE----QLTPDQLDEMIEE 43 (87)
Q Consensus 15 ~I~~~el~~~l~~~g~----~~s~~ei~~l~~~ 43 (87)
-|..++|...|+..|. ..+...+.+..+.
T Consensus 24 PI~L~el~~~L~~~g~~~~~~~~~~~l~~~lD~ 56 (64)
T PF09494_consen 24 PINLEELHAWLKASGIGFDRKVDPSKLKEWLDS 56 (64)
T ss_pred CccHHHHHHHHHHcCCCccceeCHHHHHHHHHH
Confidence 3677788888876666 5666666555543
No 172
>KOG0506|consensus
Probab=34.25 E-value=62 Score=24.67 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=40.5
Q ss_pred hcccccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHh---CC-----CCCCceecchHHHHHHhc
Q psy15708 5 LDQEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEI---DT-----DASGTVDFDGEFDERQAA 64 (87)
Q Consensus 5 f~~~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~---d~-----d~~g~I~~~~ef~~~~~~ 64 (87)
|..|-.-..+.++..-|..+|++.|+.-++..++.++.++ +. ...+.++-+ .|.+-+.+
T Consensus 92 FyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKD-lFKkcI~s 158 (622)
T KOG0506|consen 92 FYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKD-LFKKCIFS 158 (622)
T ss_pred hHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHH-HHHHhhcc
Confidence 4444444468999999999999999988877777776653 32 223566666 67665554
No 173
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=33.66 E-value=1e+02 Score=18.05 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=34.5
Q ss_pred CccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHH
Q psy15708 13 HGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQ 62 (87)
Q Consensus 13 ~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~ 62 (87)
.-.++.+++..+++..|..+....+..+.+.+. ..+.. +++...
T Consensus 15 ~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~-----gk~i~-elIa~~ 58 (103)
T cd05831 15 GIEITADNINALLKAAGVNVEPYWPGLFAKALE-----GKDIK-DLLSNV 58 (103)
T ss_pred CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc-----CCCHH-HHhhcc
Confidence 346899999999999999998888888877774 24667 777554
No 174
>KOG4347|consensus
Probab=33.43 E-value=62 Score=25.34 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhc
Q psy15708 16 IPTSSLREILAALD-EQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64 (87)
Q Consensus 16 I~~~el~~~l~~~g-~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~ 64 (87)
|+...+..+++.+- ...+..-+.++|+..|.+.+|.++|. +|+..+..
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~-~lv~gL~~ 583 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFK-DLVSGLSI 583 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHH-HHHHHHHH
Confidence 34444455554432 23455667889999999999999999 88866544
No 175
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.05 E-value=79 Score=19.99 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=38.2
Q ss_pred CCccccHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 12 SHGYIPTSSLREILAAL--DEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~--g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
-||.++..|...+..-+ ...++.+++..++.....-+...+++- .|...+..-
T Consensus 41 ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y-~fts~l~r~ 95 (148)
T COG4103 41 ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLY-SFTSVLKRH 95 (148)
T ss_pred cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHh
Confidence 46888888765543322 467899999999887766666788888 888777643
No 176
>PRK04280 arginine repressor; Provisional
Probab=32.94 E-value=78 Score=19.76 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHhC----CCCCCceecc
Q psy15708 17 PTSSLREILAALDEQLTPDQLDEMIEEID----TDASGTVDFD 55 (87)
Q Consensus 17 ~~~el~~~l~~~g~~~s~~ei~~l~~~~d----~d~~g~I~~~ 55 (87)
+-+||...|+..|...|+..+.+-++++. .+++|..-|.
T Consensus 20 tQeeL~~~L~~~Gi~vTQATiSRDikeL~lvKv~~~~G~~~Y~ 62 (148)
T PRK04280 20 TQDELVDRLREEGFNVTQATVSRDIKELHLVKVPLPDGRYKYS 62 (148)
T ss_pred CHHHHHHHHHHcCCCeehHHHHHHHHHcCCEEeecCCCcEEEe
Confidence 45689999999999999999999999875 3456765554
No 177
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=32.89 E-value=73 Score=16.13 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Q psy15708 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTD 47 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d 47 (87)
..|.|+..+++.++ ..+...+-.++..+|..
T Consensus 7 ~~~~itv~~~rd~l-----g~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 7 KNGEITVAEFRDLL-----GLSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TTSSBEHHHHHHHH-----TS-HHHHHHHHHHHHHT
T ss_pred cCCcCcHHHHHHHH-----CccHHHHHHHHHHHhcc
Confidence 37889999999988 34677777777777754
No 178
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=32.41 E-value=1.1e+02 Score=21.75 Aligned_cols=44 Identities=25% Similarity=0.416 Sum_probs=30.2
Q ss_pred hcccccCCCccccHHHHHHHHHHhCCCCC----------HHHHHHHHHHhCCCC
Q psy15708 5 LDQEQINSHGYIPTSSLREILAALDEQLT----------PDQLDEMIEEIDTDA 48 (87)
Q Consensus 5 f~~~D~~~~G~I~~~el~~~l~~~g~~~s----------~~ei~~l~~~~d~d~ 48 (87)
|++++.++.+..+..+...++..++.+.. .+++..++..+...+
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G 184 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEG 184 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCC
Confidence 44445555677889999999998875432 367777777765543
No 179
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=32.34 E-value=1.1e+02 Score=18.20 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=26.2
Q ss_pred CCccccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy15708 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIEEI 44 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~ 44 (87)
..|.++.+++..-+..-+-.++.+++..++..+
T Consensus 25 ~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred ecCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 468899999988776667788998888776653
No 180
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=32.15 E-value=73 Score=16.71 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=18.5
Q ss_pred CCccccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy15708 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIEEI 44 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~ 44 (87)
.+..++..++...+...|..++..-|...+.+.
T Consensus 10 ~~p~~s~~~i~~~l~~~~~~vS~~TI~r~L~~~ 42 (72)
T PF01498_consen 10 RNPRISAREIAQELQEAGISVSKSTIRRRLREA 42 (72)
T ss_dssp ------HHHHHHHT---T--S-HHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHHccCCcCHHHHHHHHHHc
Confidence 445688899988887768899999999999884
No 181
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=31.98 E-value=71 Score=15.68 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecc
Q psy15708 19 SSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFD 55 (87)
Q Consensus 19 ~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~ 55 (87)
+|...+|.++| ++..++..++..+.. ...++.+
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e 36 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVE 36 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHH
Confidence 56677777776 588889999888754 2234555
No 182
>PLN02222 phosphoinositide phospholipase C 2
Probab=31.89 E-value=1.4e+02 Score=23.07 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=36.7
Q ss_pred CccccHHHHHHHHHHhCC--CCCHHHHHHHHHHhCC-CCCCceecchHHHHHHhc
Q psy15708 13 HGYIPTSSLREILAALDE--QLTPDQLDEMIEEIDT-DASGTVDFDGEFDERQAA 64 (87)
Q Consensus 13 ~G~I~~~el~~~l~~~g~--~~s~~ei~~l~~~~d~-d~~g~I~~~~ef~~~~~~ 64 (87)
++.++.++|..+|..... ..+.+.+..++..+.. ...+.++++ .|..-+..
T Consensus 37 ~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~-gF~~yL~s 90 (581)
T PLN02222 37 NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLD-AFFKYLFG 90 (581)
T ss_pred CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHH-HHHHHhcC
Confidence 468999999999988643 3567788888887532 235568888 77766654
No 183
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=31.78 E-value=97 Score=19.24 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCCCHHHHHHHH
Q psy15708 21 LREILAALDEQLTPDQLDEMI 41 (87)
Q Consensus 21 l~~~l~~~g~~~s~~ei~~l~ 41 (87)
+..-++++|+.++++|+..++
T Consensus 95 l~~e~eklGi~Vs~~El~d~l 115 (145)
T PF13623_consen 95 LEQEFEKLGITVSDDELQDML 115 (145)
T ss_pred HHHHHHHhCCccCHHHHHHHH
Confidence 455567789999999988887
No 184
>PTZ00315 2'-phosphotransferase; Provisional
Probab=31.63 E-value=1.1e+02 Score=23.65 Aligned_cols=35 Identities=11% Similarity=0.330 Sum_probs=29.8
Q ss_pred ccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy15708 9 QINSHGYIPTSSLREILAALDEQLTPDQLDEMIEE 43 (87)
Q Consensus 9 D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~ 43 (87)
..+.+|+++.++|....+.-+..++.++++.++..
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ 433 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRD 433 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHc
Confidence 45689999999999988766677899999999887
No 185
>PLN02375 molybderin biosynthesis protein CNX3
Probab=31.52 E-value=52 Score=22.73 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=26.0
Q ss_pred HHHHHHHHH-hCCCCCCceecchHHHHHHhcCCCCcccccchhHHHHHH
Q psy15708 35 DQLDEMIEE-IDTDASGTVDFDGEFDERQAAGSIPARGKISTQQIEFME 82 (87)
Q Consensus 35 ~ei~~l~~~-~d~d~~g~I~~~~ef~~~~~~~~~~~~~~~~~~~~~f~~ 82 (87)
.+++.+|.+ -..|+.|+++|. |+..+-..+....... -.||||+.+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 91 (270)
T PLN02375 45 QEMQSIFGQEPSPDGPGTMDFS-ELKSSKIEPLRSKNID-FRQQIEYHK 91 (270)
T ss_pred HHHHHHhCCCCCCCCCCcccHh-HhhhcccccccccCcc-HHHHhhhhh
Confidence 344445543 356788999999 8876655543322222 235566543
No 186
>KOG2278|consensus
Probab=31.36 E-value=59 Score=21.40 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=29.0
Q ss_pred cccCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy15708 8 EQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEID 45 (87)
Q Consensus 8 ~D~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d 45 (87)
+.-.+||++..++|-+.-+--+.+-+-++++++++.=|
T Consensus 27 L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~nd 64 (207)
T KOG2278|consen 27 LNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRND 64 (207)
T ss_pred ccccCCCceEHHHHhccchhcccCCcHHHHHHHHhccc
Confidence 34568999999999877555566677889998887633
No 187
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=31.35 E-value=75 Score=15.73 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=21.4
Q ss_pred CCcccc-HHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy15708 12 SHGYIP-TSSLREILAALDEQLTPDQLDEMIEEI 44 (87)
Q Consensus 12 ~~G~I~-~~el~~~l~~~g~~~s~~ei~~l~~~~ 44 (87)
..|.|+ ..++-..|...|..+++..++.+++.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 346676 334444455668888888888887653
No 188
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=30.73 E-value=1.1e+02 Score=17.50 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=33.7
Q ss_pred ccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHH
Q psy15708 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFD 59 (87)
Q Consensus 14 G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~ 59 (87)
-.|+-.+++..|...-.-.+..+...+-..+|.-.++.|+-- ||-
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~F-eFd 65 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNF-EFD 65 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHH-HHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchh-hhH
Confidence 458899999999987655555666777777899999999888 666
No 189
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=30.60 E-value=1.5e+02 Score=19.28 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc
Q psy15708 18 TSSLREILAALDEQLTPDQLDEMIEEIDTDASGT 51 (87)
Q Consensus 18 ~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~ 51 (87)
..+.+.-|++.|++......+.++.++-.++.|.
T Consensus 4 s~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~ 37 (186)
T PF12995_consen 4 SSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGA 37 (186)
T ss_pred hHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCc
Confidence 3445555555555555555555555555555444
No 190
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=30.35 E-value=1.2e+02 Score=20.40 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=30.8
Q ss_pred cCCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy15708 10 INSHGYIPTSSLREILAALDEQLTPDQLDEMIEEID 45 (87)
Q Consensus 10 ~~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d 45 (87)
.|.+|+.+..++...++..+..++.+.+..+...-+
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~ 89 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDD 89 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCC
Confidence 467899999999999999888999999888877733
No 191
>PLN02228 Phosphoinositide phospholipase C
Probab=30.32 E-value=2e+02 Score=22.16 Aligned_cols=51 Identities=12% Similarity=0.264 Sum_probs=36.6
Q ss_pred CccccHHHHHHHHHHhCC--CCCHHHHHHHHHHhCCC----CCCceecchHHHHHHhc
Q psy15708 13 HGYIPTSSLREILAALDE--QLTPDQLDEMIEEIDTD----ASGTVDFDGEFDERQAA 64 (87)
Q Consensus 13 ~G~I~~~el~~~l~~~g~--~~s~~ei~~l~~~~d~d----~~g~I~~~~ef~~~~~~ 64 (87)
++.++.+++..+|..... ..+.+.+..++..+... ..|.++.+ .|..-+..
T Consensus 36 ~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-gF~~yl~s 92 (567)
T PLN02228 36 NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLN-AFYRYLFS 92 (567)
T ss_pred CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHH-HHHHHhcC
Confidence 357999999999987642 34567788888887543 23678888 77766644
No 192
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=30.17 E-value=1.2e+02 Score=18.04 Aligned_cols=23 Identities=17% Similarity=0.606 Sum_probs=9.7
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHH
Q psy15708 20 SLREILAALDEQLTPDQLDEMIE 42 (87)
Q Consensus 20 el~~~l~~~g~~~s~~ei~~l~~ 42 (87)
+++.++..+...+++++++.++.
T Consensus 87 E~~~lI~sl~~r~~ee~l~~iL~ 109 (118)
T smart00657 87 EAQLLIPSLEERIDEEELEELLD 109 (118)
T ss_pred HHHHHhhhhhccCCHHHHHHHHH
Confidence 34444444433344444444443
No 193
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=30.12 E-value=65 Score=14.68 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=10.2
Q ss_pred CccccHHHHHHHHHH
Q psy15708 13 HGYIPTSSLREILAA 27 (87)
Q Consensus 13 ~G~I~~~el~~~l~~ 27 (87)
.|.|+.+++..++..
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 467777777776654
No 194
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=28.78 E-value=1.4e+02 Score=20.41 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=29.8
Q ss_pred CCccccHHHHHHHHHHh--CCCCCHHH---HHHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 12 SHGYIPTSSLREILAAL--DEQLTPDQ---LDEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~--g~~~s~~e---i~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
.||.|+..|+. +++.+ ...++.++ +..+|.... ....++. +|+..+...
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k---~~~~~l~-~~~~~~~~~ 121 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGK---EPDFPLR-EKLRQFRSV 121 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhc---ccCCCHH-HHHHHHHHH
Confidence 57999999986 44433 13456665 556666543 2336777 777766553
No 195
>PLN02230 phosphoinositide phospholipase C 4
Probab=28.49 E-value=2.1e+02 Score=22.23 Aligned_cols=60 Identities=8% Similarity=0.187 Sum_probs=39.1
Q ss_pred hhcccccCCCccccHHHHHHHHHHhCC---CCCHHHHHHHHHHhCC-------CCCCceecchHHHHHHhcC
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALDE---QLTPDQLDEMIEEIDT-------DASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g~---~~s~~ei~~l~~~~d~-------d~~g~I~~~~ef~~~~~~~ 65 (87)
-|..|-. +.+.++.++|..+|..... ..+.+++..++..+.. -+.+.++++ .|..-+...
T Consensus 34 lf~~~s~-~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~F~~yL~s~ 103 (598)
T PLN02230 34 LFEKYAD-GDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLD-DFNYYLFST 103 (598)
T ss_pred HHHHHhC-CCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHH-HHHHHHcCc
Confidence 3555533 3379999999999988652 3467778888765421 123468888 777755543
No 196
>PRK05066 arginine repressor; Provisional
Probab=28.18 E-value=1.2e+02 Score=19.09 Aligned_cols=39 Identities=8% Similarity=0.163 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHhCCC-CCHHHHHHHHHHhC----CCCCCceecc
Q psy15708 17 PTSSLREILAALDEQ-LTPDQLDEMIEEID----TDASGTVDFD 55 (87)
Q Consensus 17 ~~~el~~~l~~~g~~-~s~~ei~~l~~~~d----~d~~g~I~~~ 55 (87)
+-+||...|+..|.. .|+..+.+-++++. .+++|..-|.
T Consensus 25 tQeeL~~~L~~~Gi~~vTQATiSRDikeL~lvKv~~~~G~~~Y~ 68 (156)
T PRK05066 25 SQGEIVTALQEQGFDNINQSKVSRMLTKFGAVRTRNAKMEMVYC 68 (156)
T ss_pred CHHHHHHHHHHCCCCeecHHHHHHHHHHcCCEEeeCCCCCEEEE
Confidence 456899999999999 89999999999875 3456665554
No 197
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=28.14 E-value=1e+02 Score=16.15 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q psy15708 16 IPTSSLREILAALDEQLTPDQLDEM 40 (87)
Q Consensus 16 I~~~el~~~l~~~g~~~s~~ei~~l 40 (87)
.+.+++..+.+..|..++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4578888888889999999988764
No 198
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=27.15 E-value=32 Score=18.85 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=19.9
Q ss_pred CccccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy15708 13 HGYIPTSSLREILAALDEQLTPDQLDEMIE 42 (87)
Q Consensus 13 ~G~I~~~el~~~l~~~g~~~s~~ei~~l~~ 42 (87)
.|.++..-|.++|+++-.....+++.+|+.
T Consensus 47 rgrvskavlvkmlrkly~~tk~e~vkrmlh 76 (79)
T PF09061_consen 47 RGRVSKAVLVKMLRKLYEATKNEEVKRMLH 76 (79)
T ss_dssp HS-EEHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 477888888888888755455677777654
No 199
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=27.14 E-value=1e+02 Score=16.09 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=8.7
Q ss_pred CCCCCHHHHHHHHHHhC
Q psy15708 29 DEQLTPDQLDEMIEEID 45 (87)
Q Consensus 29 g~~~s~~ei~~l~~~~d 45 (87)
|..++.+++..++..+-
T Consensus 12 g~~Ls~~e~~~~~~~i~ 28 (66)
T PF02885_consen 12 GEDLSREEAKAAFDAIL 28 (66)
T ss_dssp T----HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 45677777777777653
No 200
>COG1438 ArgR Arginine repressor [Transcription]
Probab=26.96 E-value=94 Score=19.66 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=26.2
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy15708 16 IPTSSLREILAALDEQLTPDQLDEMIEEID 45 (87)
Q Consensus 16 I~~~el~~~l~~~g~~~s~~ei~~l~~~~d 45 (87)
=+-+|+...|..-|..+++..+.+.++++.
T Consensus 21 ~TQ~Elv~~L~~~Gi~vTQaTvSRDlkelg 50 (150)
T COG1438 21 STQEELVELLQEEGIEVTQATVSRDLKELG 50 (150)
T ss_pred CCHHHHHHHHHHcCCeEehHHHHHHHHHcC
Confidence 356789999999999999999999999874
No 201
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=26.93 E-value=1.3e+02 Score=16.96 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCceecc
Q psy15708 29 DEQLTPDQLDEMIEEIDTDASGTVDFD 55 (87)
Q Consensus 29 g~~~s~~ei~~l~~~~d~d~~g~I~~~ 55 (87)
+.++|.+..+.++..+-.++- ..++.
T Consensus 45 n~~Vs~~~ed~IV~~I~~~~~-p~d~~ 70 (79)
T PF14069_consen 45 NKPVSKEQEDQIVQAIINQKI-PNDMN 70 (79)
T ss_pred CCCCCHHHHHHHHHHHHhCCC-CcCHH
Confidence 567777777777766654443 45555
No 202
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=26.91 E-value=39 Score=15.50 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=13.3
Q ss_pred HHHHHHhCCCCCCceecc
Q psy15708 38 DEMIEEIDTDASGTVDFD 55 (87)
Q Consensus 38 ~~l~~~~d~d~~g~I~~~ 55 (87)
+.++.+-|.|++.+|+.+
T Consensus 2 ~~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIE 19 (30)
T ss_pred hhHhhccccCCCcEEEEe
Confidence 456677788888888766
No 203
>PTZ00056 glutathione peroxidase; Provisional
Probab=26.84 E-value=1.3e+02 Score=19.40 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=23.3
Q ss_pred CccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCC
Q psy15708 13 HGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASG 50 (87)
Q Consensus 13 ~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g 50 (87)
.|.++.+++...+..+ +.....+++++.+|+-...
T Consensus 162 ~g~~~~~~l~~~I~~l---l~~~~~~~~~~~~~~~~~~ 196 (199)
T PTZ00056 162 SPRTEPLELEKKIAEL---LGVKDYQELFKNYDKLHPE 196 (199)
T ss_pred CCCCCHHHHHHHHHHH---HHHHHHHHHHHhhhhcCcc
Confidence 4566777777777665 4556677788887764433
No 204
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=26.47 E-value=61 Score=21.28 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=17.8
Q ss_pred ccccCCCccccHHHHHHHHHHh
Q psy15708 7 QEQINSHGYIPTSSLREILAAL 28 (87)
Q Consensus 7 ~~D~~~~G~I~~~el~~~l~~~ 28 (87)
-+|.|++|.++.+|+..+.+..
T Consensus 58 ~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 58 GLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred hhhhcccCCCCHHHHHHHHHHH
Confidence 4688999999999988776653
No 205
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=26.25 E-value=1.3e+02 Score=22.72 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=25.6
Q ss_pred ccccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy15708 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEI 44 (87)
Q Consensus 14 G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~ 44 (87)
-.++.++++++.+-....++++|++++.+++
T Consensus 387 ~~ItkEeVkKLAkLARLeLSEEElEkl~~dL 417 (477)
T PRK12821 387 QQLNKDELKKLARLVMFDLDDAELEKLQVEF 417 (477)
T ss_pred ccCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3689999999988888899999998876654
No 206
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=26.15 E-value=1.4e+02 Score=17.37 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCC
Q psy15708 16 IPTSSLREILAALDEQLTPDQLDEMIEEIDTDASG 50 (87)
Q Consensus 16 I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g 50 (87)
|+..+..-+|.-+...++++|+..+..++-..+..
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~ 54 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDP 54 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCC
Confidence 67777878888888889999999998887444443
No 207
>KOG1265|consensus
Probab=26.14 E-value=2.3e+02 Score=23.61 Aligned_cols=60 Identities=15% Similarity=0.282 Sum_probs=42.9
Q ss_pred hhcccccCCCccccHHHHHHHHHHhC----------CCCCHHHHHHHHHHhCCCC----CCceecchHHHHHHhc
Q psy15708 4 DLDQEQINSHGYIPTSSLREILAALD----------EQLTPDQLDEMIEEIDTDA----SGTVDFDGEFDERQAA 64 (87)
Q Consensus 4 ~f~~~D~~~~G~I~~~el~~~l~~~g----------~~~s~~ei~~l~~~~d~d~----~g~I~~~~ef~~~~~~ 64 (87)
-|..+-.+..-+++.++|..++..-. .......+..+++.+..++ .|+|+-+ -|++-+-.
T Consensus 226 iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~d-gf~ryl~g 299 (1189)
T KOG1265|consen 226 IFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTD-GFVRYLMG 299 (1189)
T ss_pred HHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchh-hhHHHhhC
Confidence 45666666667899999999987631 2456788999999987765 4788888 66554443
No 208
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=26.13 E-value=1.1e+02 Score=15.95 Aligned_cols=19 Identities=16% Similarity=0.511 Sum_probs=14.6
Q ss_pred hCCCCCHHHHHHHHHHhCC
Q psy15708 28 LDEQLTPDQLDEMIEEIDT 46 (87)
Q Consensus 28 ~g~~~s~~ei~~l~~~~d~ 46 (87)
+|..++.+++..++..+..
T Consensus 15 lG~~i~~~ei~~~L~~lg~ 33 (71)
T smart00874 15 LGLDLSAEEIEEILKRLGF 33 (71)
T ss_pred HCCCCCHHHHHHHHHHCCC
Confidence 3778888888888887653
No 209
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=25.84 E-value=1.1e+02 Score=15.71 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=17.9
Q ss_pred CCccccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy15708 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIE 42 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~ 42 (87)
..|.|+..|+..=+...-..-+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 3577777777665555444455555555543
No 210
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=25.44 E-value=1.1e+02 Score=17.21 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=13.4
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHH
Q psy15708 20 SLREILAALDEQLTPDQLDEMIE 42 (87)
Q Consensus 20 el~~~l~~~g~~~s~~ei~~l~~ 42 (87)
|+-.+|+++|..++.+|..-+-.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 45667899999999988765433
No 211
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=25.07 E-value=1.2e+02 Score=15.85 Aligned_cols=32 Identities=9% Similarity=0.255 Sum_probs=21.4
Q ss_pred ccHHHHHHHHH-HhCCCCCHHHHHHHHHHhCCC
Q psy15708 16 IPTSSLREILA-ALDEQLTPDQLDEMIEEIDTD 47 (87)
Q Consensus 16 I~~~el~~~l~-~~g~~~s~~ei~~l~~~~d~d 47 (87)
++.+++...+. .....++.+++.+-.+.+..|
T Consensus 4 ~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N 36 (69)
T PF00690_consen 4 LSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPN 36 (69)
T ss_dssp SSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHCcCCCCCCCHHHHHHHHHhcccc
Confidence 45666777775 444567788888777776554
No 212
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=24.30 E-value=1.2e+02 Score=16.14 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHhCCCCCC
Q psy15708 32 LTPDQLDEMIEEIDTDASG 50 (87)
Q Consensus 32 ~s~~ei~~l~~~~d~d~~g 50 (87)
-++++|..+++++.-|.+.
T Consensus 19 hse~eIya~L~ecnMDpne 37 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNE 37 (60)
T ss_pred CCHHHHHHHHHHhCCCHHH
Confidence 6888999999988766553
No 213
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.96 E-value=1.8e+02 Score=17.68 Aligned_cols=33 Identities=9% Similarity=0.219 Sum_probs=25.1
Q ss_pred CCccccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy15708 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIEEI 44 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~ 44 (87)
.++.+|.+++...|+..+..++...|.+.++.+
T Consensus 30 ~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L 62 (148)
T PRK09462 30 DNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (148)
T ss_pred CCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 346788888888888877777777777776654
No 214
>KOG4403|consensus
Probab=22.91 E-value=95 Score=23.38 Aligned_cols=26 Identities=19% Similarity=0.575 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCCceecc
Q psy15708 30 EQLTPDQLDEMIEEIDTDASGTVDFD 55 (87)
Q Consensus 30 ~~~s~~ei~~l~~~~d~d~~g~I~~~ 55 (87)
..+.-+.++.+-+.+|-|.+|.|+.+
T Consensus 63 dklg~EAir~iHrqmDDD~nG~Id~~ 88 (575)
T KOG4403|consen 63 DKLGYEAIRDIHRQMDDDHNGSIDVE 88 (575)
T ss_pred chhhHHHHHHHHHhcccccCCCcccc
Confidence 35667889999999999999999987
No 215
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=22.78 E-value=1.6e+02 Score=16.82 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=28.2
Q ss_pred chhcccccCCCcccc-----HHHHHHHHHHh-CCCCCHHHHHHHHHHhC
Q psy15708 3 QDLDQEQINSHGYIP-----TSSLREILAAL-DEQLTPDQLDEMIEEID 45 (87)
Q Consensus 3 ~~f~~~D~~~~G~I~-----~~el~~~l~~~-g~~~s~~ei~~l~~~~d 45 (87)
..|.+.|++....|- -+.++.-++.+ ...++.++++..+..++
T Consensus 27 gGyEIVDK~~~rEifi~G~~Ae~Fr~~V~~li~~~Pt~EevDdfL~~y~ 75 (85)
T PF12091_consen 27 GGYEIVDKNARREIFIDGSWAEMFREDVQALIASEPTQEEVDDFLGGYD 75 (85)
T ss_pred CCcEEeecCCCceEEeCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 357788887654432 23345555544 45789999999988765
No 216
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=22.64 E-value=1.9e+02 Score=17.60 Aligned_cols=44 Identities=9% Similarity=0.311 Sum_probs=29.3
Q ss_pred CCccccHHHHHHHHHHhC---------CCCCHHHHHHHHHHhCCCCCC-ceecc
Q psy15708 12 SHGYIPTSSLREILAALD---------EQLTPDQLDEMIEEIDTDASG-TVDFD 55 (87)
Q Consensus 12 ~~G~I~~~el~~~l~~~g---------~~~s~~ei~~l~~~~d~d~~g-~I~~~ 55 (87)
++-.|+.+|+..++..-. +.++.++++++.+.+.....+ .++..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~ 133 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLA 133 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHH
Confidence 456688888888776531 235678888887777765544 36666
No 217
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=22.51 E-value=92 Score=15.23 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=14.9
Q ss_pred hcccc-cC-CCccccHHHHHHHHHH
Q psy15708 5 LDQEQ-IN-SHGYIPTSSLREILAA 27 (87)
Q Consensus 5 f~~~D-~~-~~G~I~~~el~~~l~~ 27 (87)
|..|- ++ +..+++..||+.++..
T Consensus 12 FhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 12 FHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHhccCCCCCeEcHHHHHHHHHH
Confidence 44443 22 3467888888888865
No 218
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=22.24 E-value=1.7e+02 Score=16.65 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=9.4
Q ss_pred CCCCCHHHHHHHHHH
Q psy15708 29 DEQLTPDQLDEMIEE 43 (87)
Q Consensus 29 g~~~s~~ei~~l~~~ 43 (87)
|.+++.++++.++.+
T Consensus 51 g~~p~s~evq~l~~~ 65 (118)
T PF07739_consen 51 GVDPDSPEVQELAER 65 (118)
T ss_dssp T--TT-HHHHHHHHH
T ss_pred CCCcCCHHHHHHHHH
Confidence 778888888887765
No 219
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=22.23 E-value=1.5e+02 Score=16.19 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCceecchHHH
Q psy15708 17 PTSSLREILAALDEQLTPDQLDEMIEEIDTD-ASGTVDFDGEFD 59 (87)
Q Consensus 17 ~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d-~~g~I~~~~ef~ 59 (87)
+..+|...| .|.+.+.+.+...+..++.. .-+.++-+ ||+
T Consensus 43 ~i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~-el~ 83 (86)
T PF10437_consen 43 DIEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVE-ELI 83 (86)
T ss_dssp CHHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHH-HHH
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHH-HHH
Confidence 467777777 37789999999999998543 33567777 555
No 220
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=22.22 E-value=1.7e+02 Score=16.79 Aligned_cols=57 Identities=12% Similarity=0.192 Sum_probs=32.5
Q ss_pred hcccccCCCccccHHHHHHHHHH-------hCC----CCCHHHHHHHHHHhCCCCCCceecchHHHHHHhcC
Q psy15708 5 LDQEQINSHGYIPTSSLREILAA-------LDE----QLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 5 f~~~D~~~~G~I~~~el~~~l~~-------~g~----~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
|..+ .|++|.++...|..+|.. +|. ...+..++..|.... ..-.|+-+ +|++++...
T Consensus 9 Fsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~-~Fl~wl~~e 76 (90)
T PF09069_consen 9 FSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITEN-QFLDWLMSE 76 (90)
T ss_dssp HHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HH-HHHHHHHT-
T ss_pred HHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHH-HHHHHHHhC
Confidence 4444 578899998888777754 232 235677777777752 44578999 888776665
No 221
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=22.19 E-value=1.8e+02 Score=17.12 Aligned_cols=43 Identities=16% Similarity=0.345 Sum_probs=33.9
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHh
Q psy15708 15 YIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQA 63 (87)
Q Consensus 15 ~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~ 63 (87)
.|+.+.+..+|...|..+....+..+...+.. .+.+ +.+....
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~g-----k~i~-eli~~~~ 58 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALEG-----VNIE-EAIKKAA 58 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC-----CCHH-HHHHhhh
Confidence 79999999999999999999999988888752 3556 5554433
No 222
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.05 E-value=2e+02 Score=17.62 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=23.3
Q ss_pred CccccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy15708 13 HGYIPTSSLREILAALDEQLTPDQLDEMIEEID 45 (87)
Q Consensus 13 ~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d 45 (87)
++.++.+++...++.-+.+++...|.+.++.+.
T Consensus 34 ~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 34 DGHLSAEELYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 344778888777777777777777777666553
No 223
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=21.96 E-value=1.1e+02 Score=14.56 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHH
Q psy15708 21 LREILAALDEQLTPDQLDEMIEE 43 (87)
Q Consensus 21 l~~~l~~~g~~~s~~ei~~l~~~ 43 (87)
|..+|...+...|..+++++++.
T Consensus 3 Ld~~L~~~~~~~sr~~a~~~I~~ 25 (48)
T PF01479_consen 3 LDKFLSRLGLASSRSEARRLIKQ 25 (48)
T ss_dssp HHHHHHHTTSSSSHHHHHHHHHT
T ss_pred HHHHHHHcCCcCCHHHHHHhcCC
Confidence 34567778888899999999987
No 224
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=21.31 E-value=3e+02 Score=20.10 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=34.4
Q ss_pred hcccccCCCccccHHHHHHHHHHhCCCC-------CHH----HHHHHHHHhCCCCCCceecc
Q psy15708 5 LDQEQINSHGYIPTSSLREILAALDEQL-------TPD----QLDEMIEEIDTDASGTVDFD 55 (87)
Q Consensus 5 f~~~D~~~~G~I~~~el~~~l~~~g~~~-------s~~----ei~~l~~~~d~d~~g~I~~~ 55 (87)
|+++|.+....++.++...++..+|++. +.+ ++.++++.++..+-..|-+.
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK 224 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMK 224 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEc
Confidence 5555566788899999999999887653 333 45567777776654444443
No 225
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=21.24 E-value=1.4e+02 Score=17.20 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhCC-----CCCCceecchHHHHHHhc
Q psy15708 18 TSSLREILAALDEQLTPDQLDEMIEEIDT-----DASGTVDFDGEFDERQAA 64 (87)
Q Consensus 18 ~~el~~~l~~~g~~~s~~ei~~l~~~~d~-----d~~g~I~~~~ef~~~~~~ 64 (87)
...|+.+|+..|+.++.+++...+..++. -.+|+|+.+ .|..+...
T Consensus 11 v~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~-~W~kvG~~ 61 (90)
T PF02337_consen 11 VSILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLD-NWKKVGEE 61 (90)
T ss_dssp HHHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHH-HHHHHHHH
T ss_pred HHHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHH-HHHHHHHH
Confidence 35677788888999999999888887542 235678877 55554443
No 226
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=21.07 E-value=75 Score=18.02 Aligned_cols=44 Identities=14% Similarity=0.437 Sum_probs=32.1
Q ss_pred CCCccccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecc
Q psy15708 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFD 55 (87)
Q Consensus 11 ~~~G~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~ 55 (87)
+.+|.-+.-++-++|..+|-.+-+..++-+++.+.. +.|-+.|+
T Consensus 36 ~dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSMtR-~tgF~E~~ 79 (88)
T PF15144_consen 36 DDSGKNPEPDFPKFLNLLGTEIIENAVEFILRSMTR-STGFMEFE 79 (88)
T ss_pred cccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhhc-ccCceecC
Confidence 345555566888999999988888888888888763 45666554
No 227
>KOG2351|consensus
Probab=20.82 E-value=1.5e+02 Score=18.31 Aligned_cols=27 Identities=11% Similarity=0.575 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy15708 18 TSSLREILAALDEQLTPDQLDEMIEEI 44 (87)
Q Consensus 18 ~~el~~~l~~~g~~~s~~ei~~l~~~~ 44 (87)
.+|-+.++-+++-.+++++++++++.+
T Consensus 101 aEEAkaLvPSL~nkidD~~le~iL~dl 127 (134)
T KOG2351|consen 101 AEEAKALVPSLENKIDDDELEQILKDL 127 (134)
T ss_pred HHHHHHhccccccccCHHHHHHHHHHH
Confidence 344455555555566666666666654
No 228
>PF14337 DUF4393: Domain of unknown function (DUF4393)
Probab=20.52 E-value=2.4e+02 Score=17.76 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHH-----hCCCCCCceecchHHHHHHhcC
Q psy15708 16 IPTSSLREILAALDEQLTPDQLDEMIEE-----IDTDASGTVDFDGEFDERQAAG 65 (87)
Q Consensus 16 I~~~el~~~l~~~g~~~s~~ei~~l~~~-----~d~d~~g~I~~~~ef~~~~~~~ 65 (87)
....-...++.......++++++++|.. +|.+.+..+ -. .|++.+...
T Consensus 14 ~~~~i~~p~le~~~~~~~~e~Lremfa~LLass~d~~~~~~~-hp-~fv~Ii~qL 66 (186)
T PF14337_consen 14 PPPKIAGPALEAASYEIDDEELREMFANLLASSMDKRKNDDV-HP-SFVEIIKQL 66 (186)
T ss_pred CChhhhHHHHHhccCcCCcHHHHHHHHHHHHHHhCcCccccc-cH-HHHHHHHhC
Confidence 3445556677777778889999998886 354443322 22 466555544
No 229
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=20.42 E-value=2.1e+02 Score=17.04 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=34.8
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceecchHHHHHHh
Q psy15708 15 YIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQA 63 (87)
Q Consensus 15 ~I~~~el~~~l~~~g~~~s~~ei~~l~~~~d~d~~g~I~~~~ef~~~~~ 63 (87)
.|+.+.+..+|...|..+....+..+...+.. .+.+ +.+....
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~g-----kdIe-ElIa~~~ 58 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALEE-----VNID-EAIKKAA 58 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC-----CCHH-HHHHhcc
Confidence 79999999999999999999999999888852 4666 6665444
No 230
>PF13592 HTH_33: Winged helix-turn helix
Probab=20.26 E-value=1.4e+02 Score=15.22 Aligned_cols=32 Identities=6% Similarity=0.274 Sum_probs=24.9
Q ss_pred ccccHHHHHHHHHH-hCCCCCHHHHHHHHHHhC
Q psy15708 14 GYIPTSSLREILAA-LDEQLTPDQLDEMIEEID 45 (87)
Q Consensus 14 G~I~~~el~~~l~~-~g~~~s~~ei~~l~~~~d 45 (87)
+..+..++..++.. .|+.++...+..+++.+.
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G 35 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLG 35 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHcC
Confidence 56677888887654 688889999999988864
Done!