RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15708
(87 letters)
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 57.2 bits (139), Expect = 4e-12
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 23/73 (31%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
GYI L+ +L A E +T D ++E++++ D + G +D+D
Sbjct: 110 GYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYD------------------ 151
Query: 74 STQQIEFMEMMTG 86
EF+E M G
Sbjct: 152 -----EFLEFMKG 159
Score = 44.1 bits (105), Expect = 4e-07
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 14/71 (19%)
Query: 1 ADQDLDQEQIN-------------SHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTD 47
A + L +EQ N G I T L +++ L + TP++L EMI+E+D D
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDED 67
Query: 48 ASGTVDFDGEF 58
SGTVDFD EF
Sbjct: 68 GSGTVDFD-EF 77
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 56.4 bits (137), Expect = 6e-12
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 23/73 (31%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
G+I L EIL A E +T + +++++++ D + G +DFD
Sbjct: 111 GFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFD------------------ 152
Query: 74 STQQIEFMEMMTG 86
EF++MM G
Sbjct: 153 -----EFLKMMEG 160
Score = 45.6 bits (109), Expect = 1e-07
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 13/70 (18%)
Query: 1 ADQDLDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDA 48
A L +E I + G I T L ++ L + T ++LD +IEE+D D
Sbjct: 10 ARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDG 69
Query: 49 SGTVDFDGEF 58
SGT+DF+ EF
Sbjct: 70 SGTIDFE-EF 78
Score = 24.1 bits (53), Expect = 6.5
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 19 SSLREILAALDEQLTPDQLDEMIE---EIDTDASGTVDFD 55
+S+ + A L+ + + E D D G +
Sbjct: 1 ASMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTK 40
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 56.4 bits (137), Expect = 8e-12
Identities = 33/73 (45%), Positives = 39/73 (53%), Gaps = 23/73 (31%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
GYI T +REILA LDE L+ + LD MI+EID D SGTVDF+
Sbjct: 106 GYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFE------------------ 147
Query: 74 STQQIEFMEMMTG 86
EFM +MTG
Sbjct: 148 -----EFMGVMTG 155
Score = 43.3 bits (103), Expect = 7e-07
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + T + IL L Q T + ++I+E D +G +DFD F
Sbjct: 29 GRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFD-SF 72
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 57.6 bits (139), Expect = 1e-11
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 23/73 (31%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
GYI + LR ++ L E+LT +++DEMI E D D G V+++
Sbjct: 400 GYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE------------------ 441
Query: 74 STQQIEFMEMMTG 86
EF++MMT
Sbjct: 442 -----EFVQMMTA 449
Score = 44.1 bits (104), Expect = 7e-07
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I T L ++ +L + T +L +MI E+D D +GT+DF EF
Sbjct: 327 GTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP-EF 370
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 54.2 bits (131), Expect = 1e-11
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 23/73 (31%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
GYI + LR ++ L E+LT +++DEMI E D D G V+++
Sbjct: 44 GYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE------------------ 85
Query: 74 STQQIEFMEMMTG 86
EF++MMT
Sbjct: 86 -----EFVQMMTA 93
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 53.7 bits (130), Expect = 1e-11
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 23/77 (29%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPAR 70
+ G+I LR +A L + L ++LD MI E D D G V+++
Sbjct: 18 DGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYE--------------- 62
Query: 71 GKISTQQIEFMEMMTGD 87
EF M+ +
Sbjct: 63 --------EFARMLAQE 71
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 53.4 bits (129), Expect = 3e-11
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ +GYI S LR ++ L E+LT +++++MI+E D D G V+++ EF
Sbjct: 21 DQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYE-EF 67
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 54.9 bits (133), Expect = 3e-11
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 23/72 (31%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
G I +LR + L E LT ++L MIEE D D G ++ +
Sbjct: 111 GKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINEN------------------ 152
Query: 74 STQQIEFMEMMT 85
EF+ + T
Sbjct: 153 -----EFIAICT 159
Score = 44.5 bits (106), Expect = 3e-07
Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 2 DQDLDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDAS 49
+ +L +EQ N+ G++ L+ + AL +L ++ ++I+E D++
Sbjct: 14 NSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGR 73
Query: 50 GTVDFDGEF 58
+ +D +F
Sbjct: 74 HLMKYD-DF 81
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 51.7 bits (125), Expect = 6e-11
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + RE+ A T + + + EEID D +G ++ D EF
Sbjct: 16 GKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNAD-EF 59
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 52.6 bits (127), Expect = 6e-11
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 35/97 (36%)
Query: 1 ADQDLDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDA 48
A L +E I + G I T L ++ L + T ++LD +IEE+D D
Sbjct: 10 ARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDG 69
Query: 49 SGTVDFDGEFDERQAAGSIPARGKISTQQIEFMEMMT 85
SGT+DF+ EF+ MM
Sbjct: 70 SGTIDFE-----------------------EFLVMMV 83
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 54.1 bits (131), Expect = 7e-11
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 23/73 (31%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
GYI + LR ++ L E+LT +++DEMI E D D G V+++
Sbjct: 99 GYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE------------------ 140
Query: 74 STQQIEFMEMMTG 86
EF++MMT
Sbjct: 141 -----EFVQMMTA 148
Score = 44.1 bits (105), Expect = 4e-07
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I T L ++ +L + T +L +MI E+D D +GT+DF EF
Sbjct: 26 GTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP-EF 69
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 53.6 bits (130), Expect = 7e-11
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 23/72 (31%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
G I + LR ++ L E+LT D++DEMI E D D G ++++
Sbjct: 98 GLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYE------------------ 139
Query: 74 STQQIEFMEMMT 85
EF+ MM
Sbjct: 140 -----EFVRMMV 146
Score = 42.9 bits (102), Expect = 8e-07
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 3 QDLDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASG 50
+ L +EQI + G I T L ++ +L + T +L +MI E+D D +G
Sbjct: 2 EQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNG 61
Query: 51 TVDFDGEF 58
T+DF EF
Sbjct: 62 TIDFP-EF 68
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 53.2 bits (129), Expect = 7e-11
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 23/75 (30%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPAR 70
+ G I +L+ + L E LT ++L EMI+E D D G V
Sbjct: 91 DETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQ--------------- 135
Query: 71 GKISTQQIEFMEMMT 85
EF+ +M
Sbjct: 136 --------EFLRIMK 142
Score = 43.2 bits (103), Expect = 5e-07
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I L+ + AL + +++ +MI EID + +G ++F +F
Sbjct: 21 GTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFG-DF 64
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 53.3 bits (129), Expect = 9e-11
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I + LR++L L + LT +++E+++E+ G ++++ F
Sbjct: 91 GTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYE-SF 134
Score = 36.7 bits (86), Expect = 2e-04
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDF 54
G + L L +L + T +L+ + +++ F
Sbjct: 20 GKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATF 60
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 53.4 bits (129), Expect = 1e-10
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 23/72 (31%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
G I LR + L E LT ++L EMI E D + +D D
Sbjct: 116 GTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDED------------------ 157
Query: 74 STQQIEFMEMMT 85
EF+ +M
Sbjct: 158 -----EFIRIMK 164
Score = 43.7 bits (104), Expect = 6e-07
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 1 ADQDLDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDA 48
L +EQ + G I L+ + AL + +++ +MI EID D
Sbjct: 18 GRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDG 77
Query: 49 SGTVDFDGEF 58
SGT+DF+ EF
Sbjct: 78 SGTIDFE-EF 86
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 52.6 bits (127), Expect = 1e-10
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + LR +L L E+LT ++DE+++ ++ D++G +D+ +F
Sbjct: 98 GKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYK-KF 141
Score = 37.2 bits (87), Expect = 1e-04
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMI-EEIDTDASGTVDFDGEF 58
G I SL + L A+ T + ++I + + ++ D +
Sbjct: 19 GAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLD-QI 63
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 51.0 bits (123), Expect = 7e-10
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G+I LRE+L + ++ T +++DEM E D G ++ EF
Sbjct: 91 GFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYV-EF 134
Score = 35.5 bits (83), Expect = 4e-04
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 5 LDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTV 52
DQ QI N G+I L ++LA++ + T + L+ M+ E A G +
Sbjct: 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE----APGPI 56
Query: 53 DFDGEF 58
+F F
Sbjct: 57 NFT-MF 61
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 50.9 bits (123), Expect = 7e-10
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 24/72 (33%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
GYIP ++L++ L L ++L P + E + +T+ G + +D
Sbjct: 94 GYIPKAALQDALLNLGDRLKPHEFAEFLGITETE-KGQIRYD------------------ 134
Query: 74 STQQIEFMEMMT 85
F+ M
Sbjct: 135 -----NFINTMF 141
Score = 44.4 bits (106), Expect = 2e-07
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G+I L+ +L ++ P +EM E D +G + F EF
Sbjct: 21 GFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFP-EF 64
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 50.6 bits (122), Expect = 9e-10
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 24/73 (32%)
Query: 14 GYIPTSSLREIL-AALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGK 72
G I TS LRE + A L Q+ ++E+I ++D + G VDF+
Sbjct: 103 GEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFE----------------- 145
Query: 73 ISTQQIEFMEMMT 85
EF+ MM+
Sbjct: 146 ------EFVRMMS 152
Score = 44.8 bits (107), Expect = 1e-07
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query: 2 DQDLDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDAS 49
D+ L E+I + GYI L + + T +L E+ ++I+ +
Sbjct: 2 DRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLG 61
Query: 50 GTVDFDGEF 58
G VDFD +F
Sbjct: 62 GHVDFD-DF 69
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 51.3 bits (123), Expect = 1e-09
Identities = 9/73 (12%), Positives = 15/73 (20%), Gaps = 23/73 (31%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
G I + + + + D D +G +D D
Sbjct: 128 GTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVD------------------ 169
Query: 74 STQQIEFMEMMTG 86
E G
Sbjct: 170 -----EMTRQHLG 177
Score = 29.3 bits (66), Expect = 0.098
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 16 IPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGT-----VDFDGEF 58
I + + +I A L+ + ++ E G + F +F
Sbjct: 42 IVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFP-QF 88
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 51.2 bits (123), Expect = 1e-09
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G +L+ L E+ + D++D+ + E D +G +D +F
Sbjct: 140 GKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIK-KF 183
Score = 35.0 bits (81), Expect = 0.001
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 17/66 (25%)
Query: 5 LDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTV 52
Q Q+ + G+I + +R +L T +LD M+ E A G +
Sbjct: 51 FTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAE----APGPI 106
Query: 53 DFDGEF 58
+F F
Sbjct: 107 NFT-MF 111
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 48.9 bits (117), Expect = 2e-09
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 23/73 (31%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
G I SL+ +L L T +L ++I E+ + + T +
Sbjct: 47 GDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYP------------------ 88
Query: 74 STQQIEFMEMMTG 86
+F+ MM G
Sbjct: 89 -----DFLRMMLG 96
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 49.9 bits (120), Expect = 2e-09
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I S L E+L + TP+++ M D +G VD+
Sbjct: 110 GSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYK-NI 153
Score = 32.6 bits (75), Expect = 0.006
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 16/66 (24%)
Query: 5 LDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTV 52
D+ +I N+ G I LRE AA+ + E ++ + +ASG +
Sbjct: 19 FDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKN---EELDAMIKEASGPI 75
Query: 53 DFDGEF 58
+F F
Sbjct: 76 NFT-VF 80
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 47.9 bits (115), Expect = 2e-09
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 24/74 (32%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
G I S L + L L + D++ M+ EIDTD G +DF+
Sbjct: 18 GKISLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGFIDFN------------------ 58
Query: 74 STQQIEFMEMMTGD 87
EF+ +
Sbjct: 59 -----EFISFCNAN 67
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 49.1 bits (118), Expect = 4e-09
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 25/75 (33%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEID--TDASGTVDFDGEFDERQAAGSIPARG 71
G+I + LR +L AL E+L+ + +DE+I+ D D G V ++
Sbjct: 99 GFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYE---------------- 142
Query: 72 KISTQQIEFMEMMTG 86
+F++ +
Sbjct: 143 -------DFVKKVMA 150
Score = 37.1 bits (87), Expect = 1e-04
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + L ++ L + + + ++ F+ EF
Sbjct: 26 GAVDAFKLGDVCRCLGINPRNEDV-FAVGGTHKMGEKSLPFE-EF 68
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 47.9 bits (115), Expect = 4e-09
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I L++ L + +L ++ ++++ D D SGT+D+ EF
Sbjct: 38 GTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYG-EF 81
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 48.7 bits (116), Expect = 6e-09
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 23/73 (31%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
G I SL+ ++ L T ++ +MI E+ S T+ +
Sbjct: 65 GEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYR------------------ 106
Query: 74 STQQIEFMEMMTG 86
+F+ MM G
Sbjct: 107 -----DFVNMMLG 114
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 48.8 bits (116), Expect = 6e-09
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I SL+ +L L T +L +I E+ + + T + +F
Sbjct: 63 GDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYS-DF 106
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 47.5 bits (114), Expect = 1e-08
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 24/72 (33%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
G I + L+ +L ++ E+LT ++DEM+ E+ D SG ++
Sbjct: 99 GLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIK------------------ 139
Query: 74 STQQIEFMEMMT 85
+F +++
Sbjct: 140 -----QFAALLS 146
Score = 42.8 bits (102), Expect = 8e-07
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
Query: 3 QDLDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASG 50
Q+L +EQI ++ G I S L ++ +L + ++ +++ EID D +
Sbjct: 3 QNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNH 62
Query: 51 TVDFDGEF 58
++F EF
Sbjct: 63 AIEFS-EF 69
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 46.1 bits (110), Expect = 1e-08
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I +S L + L L +TPD++ M+ EIDTD G + FD EF
Sbjct: 26 GKISSSELGDALKTLGS-VTPDEVRRMMAEIDTDGDGFISFD-EF 68
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 47.5 bits (114), Expect = 2e-08
Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 24/73 (32%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
+ ++++L + + D++ +E + G D+
Sbjct: 102 KKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVE-GGKFDYV------------------ 142
Query: 74 STQQIEFMEMMTG 86
+F M+ G
Sbjct: 143 -----KFTAMIKG 150
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 17/67 (25%)
Query: 4 DLDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGT 51
L Q+QI + G++ ++ I L +L M++E G
Sbjct: 11 KLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP----GP 66
Query: 52 VDFDGEF 58
++F F
Sbjct: 67 LNFT-MF 72
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 46.0 bits (110), Expect = 2e-08
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I L+ + AL + ++ E++ E D + +G + FD +F
Sbjct: 22 GSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFD-DF 65
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 45.7 bits (109), Expect = 2e-08
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 25/78 (32%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQ--LDEMIEEIDTDASGTVDFDGEFDERQAAGSIP 68
I L+ ++ L L LDEMIEE+D + G V F+
Sbjct: 19 GDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFE------------- 65
Query: 69 ARGKISTQQIEFMEMMTG 86
EF+ MM
Sbjct: 66 ----------EFLVMMKK 73
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 45.6 bits (109), Expect = 2e-08
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 11 NSHGYIPTSSLREILAAL-DEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
N G I + I+ + +E LT +++E ++E D D +G +D EF
Sbjct: 20 NGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIP-EF 67
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 45.7 bits (109), Expect = 2e-08
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ L ++ AL T ++ E++++ D D SG D + F
Sbjct: 29 NKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQE-TF 72
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 47.5 bits (113), Expect = 2e-08
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I + A + + +E D D SG +D D E
Sbjct: 124 GAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVD-EM 167
Score = 27.5 bits (61), Expect = 0.49
Identities = 3/40 (7%), Positives = 10/40 (25%), Gaps = 1/40 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDG-EFDE 60
++ L + + E +G ++
Sbjct: 44 DIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPA 83
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 46.7 bits (112), Expect = 3e-08
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 24/74 (32%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
G I LR +L +L E+L+ +++DE+++ + G V++
Sbjct: 91 GMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYH------------------ 131
Query: 74 STQQIEFMEMMTGD 87
+F++M+ +
Sbjct: 132 -----DFVQMILAN 140
Score = 34.8 bits (81), Expect = 8e-04
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G IP +S+ ++L A + T I EI++ VD + +F
Sbjct: 20 GRIPKTSIGDLLRACGQNPT----LAEITEIESTLPAEVDME-QF 59
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 46.9 bits (112), Expect = 4e-08
Identities = 8/45 (17%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + ++ +R L + Q++ ++ + D G++ FD ++
Sbjct: 108 GRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFD-DY 151
Score = 42.7 bits (101), Expect = 1e-06
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I L L++ + ++++ D + SG + FD EF
Sbjct: 42 GAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFD-EF 85
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 46.4 bits (111), Expect = 4e-08
Identities = 5/45 (11%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G+IP L+++L + + + +++ + ++ + +++ +
Sbjct: 100 GFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYN-KM 142
Score = 36.3 bits (85), Expect = 3e-04
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 17/70 (24%)
Query: 1 ADQDLDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDA 48
L Q Q+ + G+I L+++ ++L D+L+ M++E
Sbjct: 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP--- 62
Query: 49 SGTVDFDGEF 58
G ++F F
Sbjct: 63 -GQLNFT-AF 70
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 46.4 bits (111), Expect = 5e-08
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDT--DASGTVDFDGEFDERQAAGSIP 68
G I ++ +R +L L E++T DQ +++ D D G + ++ + ++ AG P
Sbjct: 100 GLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYE-DLMKKVMAGPFP 155
Score = 36.0 bits (84), Expect = 4e-04
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + + + ++L L T Q+ + + E
Sbjct: 26 GDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEKAYKLE-EI 68
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 44.8 bits (107), Expect = 2e-07
Identities = 12/45 (26%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + + LR +LA L E++T ++++E+++ + D++G ++++ F
Sbjct: 100 GTVMGAELRHVLATLGEKMTEEEVEELMKGQE-DSNGCINYE-AF 142
Score = 37.9 bits (89), Expect = 7e-05
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 15/69 (21%)
Query: 4 DLDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDA--S 49
+ + I S + +I AL + T ++++++ + +
Sbjct: 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNA 60
Query: 50 GTVDFDGEF 58
+ F+ EF
Sbjct: 61 AAITFE-EF 68
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 44.1 bits (105), Expect = 2e-07
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + ++ ++ L + + ID D +G +D + EF
Sbjct: 15 GAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQN-EF 58
Score = 38.7 bits (91), Expect = 3e-05
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + + +++ E + + D + G + + EF
Sbjct: 90 GKLTKEEVTSFFKKHGI----EKVAEQVMKADANGDGYITLE-EF 129
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 44.5 bits (106), Expect = 2e-07
Identities = 10/45 (22%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + + LR +L L E++T ++++ ++ D++G ++++ F
Sbjct: 102 GKVMGAELRHVLTTLGEKMTEEEVETVLAG-HEDSNGCINYE-AF 144
Score = 35.6 bits (83), Expect = 5e-04
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 4 DLDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDA--S 49
+ +++Q+ G I S +++ AL + T ++ +++ +D S
Sbjct: 3 EFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKS 62
Query: 50 GTVDFDGEF 58
VDF+ F
Sbjct: 63 RRVDFE-TF 70
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 43.6 bits (103), Expect = 3e-07
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
I R I + LT +Q D + E+ +A G + + +F
Sbjct: 36 MKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYP-DF 82
Score = 24.4 bits (53), Expect = 4.8
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 19 SSLREILAALDEQLTP--DQLDEMIEEIDTDASGTVDFD 55
++ R+ILA L + +T + + E DT + T+ +
Sbjct: 6 TADRDILARLHKAVTSHYHAITQEFENFDTMKTNTISRE 44
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 44.2 bits (105), Expect = 3e-07
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I + L++ L+ +L+ D +I + D G + FD +F
Sbjct: 89 GMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFD-DF 132
Score = 36.8 bits (86), Expect = 2e-04
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 14 GYIPTSSLREILAALD-EQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I + L++ L+ P + +I D + V+F EF
Sbjct: 22 GVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFS-EF 66
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 44.1 bits (105), Expect = 4e-07
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 14 GYIPTSSLREILAA--LDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I L+ I ++ L +D +++E+D + G +DF EF
Sbjct: 144 GKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFH-EF 189
Score = 43.3 bits (103), Expect = 9e-07
Identities = 10/45 (22%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + + + + L + Q P + +++ +ID++ASG + + +F
Sbjct: 72 GTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYT-DF 115
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 43.5 bits (103), Expect = 4e-07
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 11 NSHGYIPTSSLREILAAL-DEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
I SLR L E ++ + M+ E D D G ++ EF
Sbjct: 52 PERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQT-EF 99
Score = 28.5 bits (64), Expect = 0.19
Identities = 2/23 (8%), Positives = 7/23 (30%), Gaps = 1/23 (4%)
Query: 36 QLDEMIEEIDTDASGTVDFDGEF 58
M+ E + ++ +
Sbjct: 4 TEKSMLLETTSTTKMETKYE-DM 25
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 43.4 bits (103), Expect = 5e-07
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
GY+ S ++ IL + LT + + + ++ +D+ F
Sbjct: 99 GYLTKSQMKNILTTWGDALTDQEAIDALNAFSSE--DNIDYK-LF 140
Score = 31.0 bits (71), Expect = 0.020
Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 17/70 (24%)
Query: 1 ADQDLDQEQI------------NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDA 48
AD +E++ +S G I + L + ++ E
Sbjct: 5 ADIQQLEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG--- 61
Query: 49 SGTVDFDGEF 58
+ ++ ++
Sbjct: 62 -DNLTYE-QY 69
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 42.9 bits (102), Expect = 1e-06
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I L+ L + L ++ ++++ D D SGT+D+ EF
Sbjct: 42 GQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYK-EF 85
Score = 39.8 bits (94), Expect = 1e-05
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 25/72 (34%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
GYI L++ + +++E++ ++D D G +D++
Sbjct: 114 GYITPDELQQACEEFG--VEDVRIEELMRDVDQDNDGRIDYN------------------ 153
Query: 74 STQQIEFMEMMT 85
EF+ MM
Sbjct: 154 -----EFVAMMQ 160
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 41.5 bits (98), Expect = 1e-06
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 29/82 (35%)
Query: 10 INSHGYIPTSSLREILAALDEQL------TPDQLDEMIEEIDTDASGTVDFDGEFDERQA 63
N GY+ L+ + LD + ++I+ D ++ G + +
Sbjct: 18 ANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKE-------- 69
Query: 64 AGSIPARGKISTQQIEFMEMMT 85
EF+
Sbjct: 70 ---------------EFLNANA 76
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 42.6 bits (101), Expect = 1e-06
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I L++ L + +L ++ ++++ D D SGT+D+ EF
Sbjct: 25 GTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYG-EF 68
Score = 41.8 bits (99), Expect = 3e-06
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 25/75 (33%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPAR 70
+ GYI +++ L +D+MI+EID D G +D+
Sbjct: 94 DGSGYITLDEIQQACKDFG--LDDIHIDDMIKEIDQDNDGQIDYG--------------- 136
Query: 71 GKISTQQIEFMEMMT 85
EF MM
Sbjct: 137 --------EFAAMMR 143
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 42.4 bits (100), Expect = 2e-06
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
GY+ + L A+ LT D+ +D + +G + D EF
Sbjct: 117 GYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRD-EF 160
Score = 27.4 bits (61), Expect = 0.45
Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 25 LAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
L+A + T + + +++ + + E
Sbjct: 49 LSAEKAEETRQEFLRVADQLGLAPGVRISVE-EA 81
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 41.9 bits (99), Expect = 3e-06
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ + R+ LA L L + + + + D + SGT+D + EF
Sbjct: 49 DGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLE-EF 95
Score = 29.6 bits (67), Expect = 0.071
Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 31/81 (38%)
Query: 14 GYIPTSSLREILAA-------LDEQLTPDQLDEMIEEID-TDASGTVDFDGEFDERQAAG 65
G + LR + + E + L ++ D ++ G V
Sbjct: 124 GVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLA---------- 173
Query: 66 SIPARGKISTQQIEFMEMMTG 86
EF + +G
Sbjct: 174 -------------EFQDYYSG 181
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 42.4 bits (100), Expect = 3e-06
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I T L ++ + D + ++L+ +IE++D + G VDF+ EF
Sbjct: 432 GKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFN-EF 475
Score = 31.6 bits (72), Expect = 0.018
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 12 SHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
L + DQ+D ++ +D D SG++++ EF
Sbjct: 358 HEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEY-SEF 403
Score = 26.6 bits (59), Expect = 0.90
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 22 REILAALDEQLTP----DQLDEMIEEIDTDASGTVDFD 55
+ L + +LT QL E+ ++DT+ G +D D
Sbjct: 314 QAALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRD 351
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 40.4 bits (95), Expect = 3e-06
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + R + L ++ P + + + +D D G + F EF
Sbjct: 42 GRLEREEFRALCTEL--RVRPADAEAVFQRLDADRDGAITFQ-EF 83
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 41.1 bits (97), Expect = 6e-06
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 14 GYIPTSSLREILAALDEQLTP-----DQLDEMIEEIDTDASGTVDFDGEF 58
G I T+ L IL +++ +++ MI ++D + G +DF EF
Sbjct: 137 GEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFH-EF 185
Score = 38.8 bits (91), Expect = 5e-05
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
GYI L++ L + P D ++++ID+D SG +D+ EF
Sbjct: 67 GYITKEQLKKGLEKDGLK-LPYNFDLLLDQIDSDGSGKIDYT-EF 109
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 39.5 bits (93), Expect = 9e-06
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 14 GYIPTSSLREILAALD---EQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G+I L+ +L + LT + ++ D D G + D EF
Sbjct: 57 GFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGID-EF 103
Score = 24.8 bits (55), Expect = 2.6
Identities = 5/32 (15%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 27 ALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
A + L D + + ++ + + G+ + +F
Sbjct: 2 AAKDLLKADDIKKALDAVKAE--GSFNHK-KF 30
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 39.5 bits (93), Expect = 1e-05
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 11 NSHGYIPTSSLREILAALD---EQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ G+I L+ +L L + ++ D+D G + D EF
Sbjct: 53 DQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGAD-EF 102
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 38.8 bits (91), Expect = 2e-05
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 14 GYIPTSSLREILAAL---DEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G+I L+ L LT + + D D G + + EF
Sbjct: 56 GFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAE-EF 102
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 39.8 bits (93), Expect = 2e-05
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + L+ ++ A D + + E+ DTD SG ++ E
Sbjct: 143 GTVDVDELKTMMKAFD--VPQEAAYTFFEKADTDKSGKLERT-EL 184
Score = 28.2 bits (63), Expect = 0.23
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 20 SLREILAALDEQLTP--DQLDEMIEEIDTDASGTVDFDGEF 58
+R+++ A DEQ+ D + + + + ++
Sbjct: 64 RMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLRE-DW 103
Score = 24.0 bits (52), Expect = 8.9
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 7 QEQINSHGYIPTSSLREILAALDEQLTPDQLDEMIE---EIDTDASGTVDFD 55
+ N+ Y S+ E L P L + + D D+ G ++ D
Sbjct: 5 LNEQNNESYRYLRSVGNQWQFNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMD 56
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 38.4 bits (90), Expect = 3e-05
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 14 GYIPTSSLREILAALD---EQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
GY+ L+ L +LT + +++ D D G + D EF
Sbjct: 56 GYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGAD-EF 102
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 38.0 bits (89), Expect = 4e-05
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 14 GYIPTSSLREILAALD---EQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G+I L IL L+ + ++ D D G + + EF
Sbjct: 56 GFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVE-EF 102
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 38.8 bits (91), Expect = 4e-05
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I L + ++ + ++++E D + G VDF+ EF
Sbjct: 138 GKITNEELGRLFG--VTEVDDETWHQVLQECDKNNDGEVDFE-EF 179
Score = 36.5 bits (85), Expect = 3e-04
Identities = 8/36 (22%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 23 EILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ ++ LD ++D +++ +D D +G +++ EF
Sbjct: 75 DTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYS-EF 109
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 39.0 bits (91), Expect = 4e-05
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 10 INSHGYIPTSSLREILAAL-DEQLTPDQL----DEMIEEIDTDASGTVDFDGEF 58
++ G I + ++L + Q+T +QL D ++E D D G V F EF
Sbjct: 125 LDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFV-EF 177
Score = 30.5 bits (69), Expect = 0.041
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
N GY+ L++I A L D +IE D S VDF F
Sbjct: 41 NKKGYLSRMDLQQIGALAVNPL----GDRIIESFFPDGSQRVDFP-GF 83
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 38.4 bits (90), Expect = 5e-05
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 10 INSHGYIPTSSLREILAAL-DEQLTPDQL----DEMIEEIDTDASGTVDFDGEF 58
++ GYI L ++L + L QL D+ I D D G + F+ EF
Sbjct: 86 MDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFE-EF 138
Score = 31.8 bits (73), Expect = 0.013
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + + L + +I+ DTD +G VDF EF
Sbjct: 21 GSLSVEEFMSLPELQQNPL----VQRVIDIFDTDGNGEVDFK-EF 60
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 37.5 bits (88), Expect = 5e-05
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 14 GYIPTSSLREILAALD---EQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G+I L+ L LT + + + D D G + D EF
Sbjct: 56 GFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVD-EF 102
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 37.6 bits (88), Expect = 5e-05
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 11 NSHGYIPTSSLREILAALD---EQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ G+I L+ L LT + ++ D+D G + D E+
Sbjct: 54 DKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVD-EW 103
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 38.2 bits (89), Expect = 8e-05
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + + L +L+P M+ DTD +G + F EF
Sbjct: 66 GTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFY-EF 109
Score = 33.2 bits (76), Expect = 0.005
Identities = 4/45 (8%), Positives = 13/45 (28%), Gaps = 2/45 (4%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + + L L + + ++ + D + +
Sbjct: 132 GTLEPHEILPALQQLGFYINQ-RTSLLLHRLFARGMAFCDLN-CW 174
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 36.0 bits (84), Expect = 8e-05
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + ++ ++ L + + ID D +G +D + EF
Sbjct: 15 GAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQN-EF 58
Score = 26.4 bits (59), Expect = 0.41
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 37 LDEMIEEIDTDASGTVDFDGEF 58
+ + +EID + G V ++ E
Sbjct: 2 AEALFKEIDVNGDGAVSYE-EV 22
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 38.3 bits (89), Expect = 8e-05
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 14 GYIPTSSLREILAALD-EQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + ++++L + + + +D D S ++ + EF
Sbjct: 268 GQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQ-EF 312
Score = 37.9 bits (88), Expect = 1e-04
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
NS+G + RE L D + D D S V F E+
Sbjct: 200 NSNGTLSRKEFREHFVRLGFDK-KSVQDALFRYADEDESDDVGFS-EY 245
Score = 36.7 bits (85), Expect = 3e-04
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G L+++LA + + L ++ ++ D G + +
Sbjct: 137 GKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYI-TL 180
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 38.0 bits (88), Expect = 1e-04
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 11 NSHGYIPTSSLREILAALD-EQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPA 69
+ + + + + L+ + + +E+D + +G+V FD EF +A + A
Sbjct: 142 SGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFD-EFAAWASAVKLDA 200
Query: 70 RGKISTQQIEFMEMM 84
G +E
Sbjct: 201 DGDPDNVPESALEHH 215
Score = 24.9 bits (54), Expect = 4.2
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 21 LREILAALDEQLTPDQLDEMIE---EIDTDASGTVDFD 55
I A+ + T + IE + D + +G + +D
Sbjct: 31 WERIRQAIPREKTAEAKQRRIELFKKFDKNETGKLCYD 68
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 37.8 bits (88), Expect = 1e-04
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I L + + L EMI ID++ G VDF+ EF
Sbjct: 441 GKISVDELASVFG--LDHLESKTWKEMISGIDSNNDGDVDFE-EF 482
Score = 29.3 bits (66), Expect = 0.12
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 23 EILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
E +A D ++D ++ D D +G +D+ EF
Sbjct: 378 EEVAVFDLPQIESEVDAILGAADFDRNGYIDY-SEF 412
Score = 26.6 bits (59), Expect = 1.0
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 22 REILAALDEQLTPDQ----LDEMIEEIDTDASGTVDFD 55
+ L + +LT + L ++ ID + G +D
Sbjct: 329 QAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQ 366
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 36.7 bits (85), Expect = 2e-04
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFD 55
+ G + L++ L + +L+P ++ + + T+ G + FD
Sbjct: 115 DRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN--GKITFD 157
Score = 30.1 bits (68), Expect = 0.054
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLD-----EMIEEIDTDASGTVDFDGEF 58
G I L+ L + M+ +D D SGT+ F+ EF
Sbjct: 44 GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFN-EF 95
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 36.6 bits (85), Expect = 3e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I ++ L I + + ++ E+D + G VDFD EF
Sbjct: 433 GKISSTELATIFG--VSDVDSETWKSVLSEVDKNNDGEVDFD-EF 474
Score = 30.4 bits (69), Expect = 0.044
Identities = 8/36 (22%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 23 EILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ + LD ++D++++ +D D +G +++ EF
Sbjct: 370 QDASMLDASAVEHEVDQVLDAVDFDKNGYIEY-SEF 404
Score = 26.2 bits (58), Expect = 1.4
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 22 REILAALDEQLTP----DQLDEMIEEIDTDASGTVDFD 55
+ L + +LT +L + ++D + G +D
Sbjct: 318 QAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRA 355
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 36.2 bits (84), Expect = 4e-04
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I L + ++ ++++ E D + +DFD EF
Sbjct: 450 GKITKEELANLFG--LTSISEKTWNDVLGEADQNKDNMIDFD-EF 491
Score = 30.1 bits (68), Expect = 0.070
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 14 GYIPTSSLREILAAL--------DEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + L E L + + +++D +++E+D D +G +++ EF
Sbjct: 370 GQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEY-SEF 421
Score = 26.2 bits (58), Expect = 1.5
Identities = 6/38 (15%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 22 REILAALDEQLTPDQ----LDEMIEEIDTDASGTVDFD 55
+ + + +LT + L ++ +++D + G +D
Sbjct: 338 QAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKK 375
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 35.7 bits (83), Expect = 4e-04
Identities = 7/45 (15%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + + +LA++ + ++ +++ +D + G + + EF
Sbjct: 54 GSLSHREIYTVLASVG--IKKWDINRILQALDINDRGNITYT-EF 95
Score = 35.7 bits (83), Expect = 5e-04
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 17/71 (23%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSIPARGKI 73
GYI S + ++ D+ L + +D + + G KI
Sbjct: 123 GYISKSDIVSLVH--DKVLDNNDIDNFFLSVHSIKKGIPREHII-------------NKI 167
Query: 74 STQQIEFMEMM 84
S Q EF + M
Sbjct: 168 SFQ--EFKDYM 176
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 35.5 bits (82), Expect = 5e-04
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + + L A + D + +DTD G V E
Sbjct: 113 GAVTVADTARALTAFG--VPEDLARQAAAALDTDGDGKVGET-EI 154
Score = 28.5 bits (64), Expect = 0.20
Identities = 4/26 (15%), Positives = 7/26 (26%), Gaps = 1/26 (3%)
Query: 33 TPDQLDEMIEEIDTDASGTVDFDGEF 58
+ D D + + EF
Sbjct: 53 AEALWQGLAGIADRDGDQRITRE-EF 77
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 34.9 bits (81), Expect = 5e-04
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 14 GYIPTSSLREILAAL---DEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G+I L+ L LT + + DTD G + + EF
Sbjct: 57 GFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVE-EF 103
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 35.0 bits (81), Expect = 0.001
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFD 55
G + LR+ + + +L+P L +++ + G + FD
Sbjct: 85 GTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKN--GRIFFD 124
Score = 31.2 bits (71), Expect = 0.017
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLD-----EMIEEIDTDASGTVDFDGEF 58
G + L+ L T MI +D D +G + F+ F
Sbjct: 11 GQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFN-AF 62
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 35.1 bits (81), Expect = 0.001
Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
I L L + IDT+ G + + EF
Sbjct: 109 NNISRDEYGIFFGML--GLDKTMAPASFDAIDTNNDGLLSLE-EF 150
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 34.3 bits (79), Expect = 0.001
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G I L AL ++ + E ++DT+ +G + D E
Sbjct: 117 GQINADEFAAWLTALG--MSKAEAAEAFNQVDTNGNGELSLD-EL 158
Score = 25.5 bits (56), Expect = 2.3
Identities = 4/21 (19%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 38 DEMIEEIDTDASGTVDFDGEF 58
D + +E + G++ + +F
Sbjct: 61 DYLAKEAGVGSDGSLTEE-QF 80
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 34.3 bits (79), Expect = 0.001
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFD 55
+ G + L++ L + +L P ++ + + T G + FD
Sbjct: 84 DRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTS--GKITFD 126
Score = 28.9 bits (65), Expect = 0.13
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDE-----MIEEIDTDASGTVDFDGEF 58
G I L+ L + M+ +D D SGT+ F+ EF
Sbjct: 13 GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFN-EF 64
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 34.0 bits (78), Expect = 0.002
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 10 INSHGYIPTSSLREILAAL-DEQLTPDQL----DEMIEEIDTDASGTVDFDGEF 58
++ I L ++L + ++ +QL D I+E D D + F EF
Sbjct: 124 LDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFT-EF 176
Score = 27.4 bits (61), Expect = 0.46
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+G + + I L D +I ++ V+F F
Sbjct: 41 GENGTLSREDFQRIPELAINPL----GDRIINAFFSEGEDQVNFR-GF 83
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 34.1 bits (78), Expect = 0.002
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
Query: 11 NSHGYIPTSSLREILAALDEQLTP--------DQLDEMIEEIDTDASGTVDFDGEF 58
+ G+I T L+ L L E+ + D M++ D++ G ++ E
Sbjct: 115 DHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELT-EM 169
Score = 31.8 bits (72), Expect = 0.014
Identities = 5/48 (10%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 14 GYIPTSSLREILAALDEQLTPD------QLDEMIEEIDTDASGTVDFD 55
GY+ L+ ++ L + ++ +++ G +
Sbjct: 31 GYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIV 78
Score = 29.5 bits (66), Expect = 0.093
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEI-----DTDASGTVDFDGEF 58
GYI + L +L L E+ + I G + +
Sbjct: 206 GYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRT-DL 254
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 32.9 bits (75), Expect = 0.006
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
I + + + D + + V + F
Sbjct: 124 NIIDKHEYSTVYMSYG--IPKSDCDAAFDTLSDGGKTMVTRE-IF 165
Score = 25.6 bits (56), Expect = 2.0
Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 37 LDEMIEEIDTDASGTVDFDGEF 58
D + + D + V + E+
Sbjct: 66 WDGLRKYADENEDEQVTKE-EW 86
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 32.4 bits (74), Expect = 0.007
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFD 55
G I +S L A L +I +D G +DFD
Sbjct: 92 GTIGSSELPGAFEAAGFHLNEHLYSMIIRR-YSDEGGNMDFD 132
Score = 27.0 bits (60), Expect = 0.55
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 13 HGYIPTSSLREILAALDEQLT--------PDQLDEMIEEIDTDASGTVDFDGEF 58
+ + L IL + + D M+ +D+D +G + F+ EF
Sbjct: 17 DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFE-EF 69
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 30.9 bits (70), Expect = 0.013
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+E L+ Q P +D++++++D G V F F
Sbjct: 36 KEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQ-SF 71
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 31.4 bits (71), Expect = 0.016
Identities = 6/50 (12%), Positives = 13/50 (26%), Gaps = 3/50 (6%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDE 60
+ G + + L + + I T D + + E
Sbjct: 117 SGDGIVDLEEFQNYCKNFQ--LQCADVPAVYNVITDGGKVTFDLN-RYKE 163
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 31.3 bits (71), Expect = 0.023
Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 10 INSHGYIPTSSLREILAAL------DEQLTPDQL-DEMIEEIDTDASGTVDFDGEF 58
++ +G I L I+ A+ +E +T ++ + + ++ID + G + + EF
Sbjct: 99 VDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLE-EF 153
Score = 29.0 bits (65), Expect = 0.12
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 9 QINSHGYIPTSSLREILAALDEQLTPDQL-DEMIEEIDTDASGTVDFDGEF 58
G + ++ + + ++ ++M E D + G +DF E+
Sbjct: 25 TECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFM-EY 74
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 30.9 bits (70), Expect = 0.027
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 10 INSHGYIPTSSLREILAAL------DEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ +G I + L ++ A+ + ++ + +ID + G + + EF
Sbjct: 104 ADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLE-EF 157
Score = 28.6 bits (64), Expect = 0.18
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 14 GYIPTSSLREILAALDEQLTPDQL-DEMIEEIDTDASGTVDFDGEF 58
G + +L ++ D++ DT+ G VDF EF
Sbjct: 35 GLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFL-EF 79
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 30.9 bits (70), Expect = 0.027
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 10 INSHGYIPTSSLREILAA--------LDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ G+I +++++ A L + + D +D+ EE DT G +D + E+
Sbjct: 133 LKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKE-EW 188
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 30.5 bits (69), Expect = 0.033
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 10 INSHGYIPTSSLREILAA--------LDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ G+I L+E++ A L E + +D+ + D G +D D E+
Sbjct: 122 LRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDID-EW 177
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 29.8 bits (67), Expect = 0.038
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
RE+ + L ++ +++ +D++ VDF E+
Sbjct: 40 RELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQ-EY 75
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 29.2 bits (66), Expect = 0.041
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 20 SLREILAALDEQLT-----PDQLDEMIEEIDTDASGTVDFDGEF 58
S E+ + + P LD++ +E+D + G V F+ EF
Sbjct: 27 SKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFE-EF 69
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 29.8 bits (67), Expect = 0.043
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
E+ + LD Q D +D++++E+D + G VDF EF
Sbjct: 39 TELSSFLDVQKDADAVDKIMKELDENGDGEVDFQ-EF 74
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2);
EF-hand, calcium-binding protein, guanylyl cyclase
regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 30.2 bits (68), Expect = 0.050
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G + + D + ++ M DT+ T+DF E+
Sbjct: 38 GTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDF-LEY 81
Score = 26.7 bits (59), Expect = 0.78
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 18/66 (27%)
Query: 10 INSHGYIPTSSLREILAAL----------------DEQLTPDQL-DEMIEEIDTDASGTV 52
+ +G I L +I+ ++ + LTP+++ D + +D + G +
Sbjct: 106 KDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQL 165
Query: 53 DFDGEF 58
+ EF
Sbjct: 166 SLN-EF 170
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 29.9 bits (67), Expect = 0.051
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
RE+ + L ++ +++ +D++ VDF E+
Sbjct: 52 RELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQ-EY 87
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 29.4 bits (66), Expect = 0.051
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+E+ L + D++I+ +D + G + FD E+
Sbjct: 42 KELNHMLSDTGNRKAADKLIQNLDANHDGRISFD-EY 77
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 29.5 bits (66), Expect = 0.067
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
RE+ + L ++ +++ +D++ VDF E+
Sbjct: 43 RELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQ-EY 78
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 29.7 bits (67), Expect = 0.070
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 10 INSHGYIPTSSLREILAAL-----DEQLTPDQL----DEMIEEIDTDASGTVDFDGEFDE 60
+ G + L ++ L D +L+ ++ D ++EE D D GT++ EF
Sbjct: 109 FDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS-EFQH 167
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 30.0 bits (68), Expect = 0.072
Identities = 5/41 (12%), Positives = 8/41 (19%), Gaps = 3/41 (7%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDF 54
I + + LD P + G
Sbjct: 397 ACIAYIRITQ---YLDAGGIPRTAQSEETRVWHRRDGKWQI 434
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 29.0 bits (65), Expect = 0.078
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 13 HGYIPTSSLREILAALDEQL-----TPDQLDEMIEEIDTDASGTVDFDGEF 58
G + S+ E + +QL LDE ++ +D + + F+ E+
Sbjct: 35 EGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFN-EY 84
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 29.0 bits (65), Expect = 0.080
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+E+ + +DE+ + +D + VDF EF
Sbjct: 42 KELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQ-EF 77
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 29.0 bits (65), Expect = 0.080
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
E+ L+E + +D+++E +D++ G DF EF
Sbjct: 39 NELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQ-EF 74
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 29.6 bits (66), Expect = 0.083
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 11 NSHGYIPTSSLREILAAL--------DEQLTPDQLDEMIEEIDTDASGTVDFD 55
+S GYI + L+ L L + D M++ D + G +D +
Sbjct: 116 DSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLN 168
Score = 26.6 bits (58), Expect = 1.1
Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPD--------QLDEMIEEIDTDASGTVDFDGEF 58
+ G + + + + E + P + ++ D + G + E
Sbjct: 208 SRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKS-EL 262
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 29.0 bits (65), Expect = 0.087
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G++ R IL + L QL + D D G + + EF
Sbjct: 29 GHLTGPQARTIL--MQSSLPQAQLASIWNLSDIDQDGKLTAE-EF 70
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 28.6 bits (64), Expect = 0.092
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+E+ L D +D++++++D + VDF EF
Sbjct: 39 KELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFS-EF 74
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 29.4 bits (66), Expect = 0.097
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 10 INSHGYIPTSSLREILAAL-----DEQLTPDQL----DEMIEEIDTDASGTVDFDGEFDE 60
+ G + L ++ L D +L+ ++ D ++EE D D GT++ EF
Sbjct: 140 FDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS-EFQH 198
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 28.7 bits (64), Expect = 0.098
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+E+ + ++ + +DT+ VDF E+
Sbjct: 40 KELATWTPTEFRECDYNKFMSVLDTNKDCEVDFV-EY 75
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 28.6 bits (64), Expect = 0.10
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 14 GYIPTSSLREILAA-LDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ L+++L + + D +E+D + G V+F EF
Sbjct: 27 HAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQ-EF 71
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 28.3 bits (63), Expect = 0.15
Identities = 8/37 (21%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+E+ + + E++ + L +++ +D ++ VDF E+
Sbjct: 41 KELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQ-EY 76
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 28.1 bits (63), Expect = 0.15
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ +G+IP S+ +E +L +L + E D D G + D EF
Sbjct: 21 DLNGFIPGSAAKEFFTKS--KLPILELSHIWELSDFDKDGALTLD-EF 65
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 28.3 bits (63), Expect = 0.16
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
E+ A Q P LD M++++D D+ G +DF EF
Sbjct: 43 TELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQ-EF 78
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 28.1 bits (63), Expect = 0.16
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ G++ +REI L L + DT G + D +F
Sbjct: 22 DMDGFVSGLEVREIFLKT--GLPSTLLAHIWSLCDTKDCGKLSKD-QF 66
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand,
EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB:
2jxc_A 1f8h_A 1ff1_A
Length = 106
Score = 28.2 bits (63), Expect = 0.19
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+G++ ++ +L L+ +L D L + E D D G +D D EF
Sbjct: 26 PVNGFLSGDKVKPVL--LNSKLPVDILGRVWELSDIDHDGMLDRD-EF 70
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 27.9 bits (62), Expect = 0.24
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 22 REILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
E+ L Q P +++++ ++D++ VDF+ EF
Sbjct: 40 AELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFN-EF 75
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 27.8 bits (62), Expect = 0.26
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
+ +I S + +L+ +L + E D D G + EF
Sbjct: 34 DPSSFISGSVAKNFFTKS--KLSIPELSYIWELSDADCDGALTLP-EF 78
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 27.4 bits (61), Expect = 0.33
Identities = 9/46 (19%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 18 TSSLREILAALDEQLTPDQ-----LDEMIEEIDTDASGTVDFDGEF 58
T S +E+ + ++L + +D++++ +D ++ +DF E+
Sbjct: 28 TLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFK-EY 72
>2d7e_A Primosomal protein N'; inter-twined, hydrolase; 2.50A
{Escherichia coli} PDB: 2d7g_A* 2d7h_A* 2dwl_A 2dwm_A
2dwn_A*
Length = 105
Score = 26.7 bits (60), Expect = 0.50
Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 16 IPTSSLREILAALDEQ--LTPDQLD 38
+P + L+ ++ LD + T
Sbjct: 55 LPLNELKAVVEVLDSEPVFTHSVWR 79
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 27.1 bits (60), Expect = 0.52
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 10 INSHGYIPTSSLREILAA------------LDEQLTPDQLDEMIEEIDTDASGTVDFDGE 57
+N GYI + I+A+ DE ++ ++ + +D + G + D E
Sbjct: 110 LNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLD-E 168
Query: 58 FDE 60
F E
Sbjct: 169 FRE 171
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 27.1 bits (60), Expect = 0.53
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
G+I R L L ++ D + G +D EF
Sbjct: 47 GFITGDQARNFF--FQSGLPQPVLAQIWALADMNNDGRMDQV-EF 88
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme
delta1; phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 27.6 bits (60), Expect = 0.54
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 11 NSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
N + L++ L L+ Q+ ++ E D + +++ + E
Sbjct: 23 NKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDE-EI 69
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 26.8 bits (59), Expect = 0.55
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 30 EQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
E ++ ++E++DT+A + F+ EF
Sbjct: 51 ENKNEKVIEHIMEDLDTNADKQLSFE-EF 78
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 26.7 bits (59), Expect = 0.59
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 30 EQLTPDQLDEMIEEIDTDASGTVDFDGEF 58
++ + L ++ E+ D + +DF EF
Sbjct: 47 DKKGTNYLADVFEKKDKNEDKKIDFS-EF 74
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto
reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A
{Bacillus subtilis} SCOP: c.1.7.1
Length = 333
Score = 27.1 bits (61), Expect = 0.66
Identities = 4/24 (16%), Positives = 7/24 (29%), Gaps = 1/24 (4%)
Query: 21 LREILAALDEQLTPDQLDEMIEEI 44
L + L + + I I
Sbjct: 287 LEALSEITGWTLNSEDQKD-INTI 309
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 26.3 bits (58), Expect = 0.72
Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 18 TSSLREILAALDEQLT------PDQLDEMIEEIDTDASGTVDFDGEF 58
T S +E+ + ++LT ++ ++E++D + V+F E+
Sbjct: 28 TLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQ-EY 73
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 26.3 bits (58), Expect = 1.0
Identities = 13/61 (21%), Positives = 33/61 (54%), Gaps = 13/61 (21%)
Query: 10 INSHGYIPTSSLREILAAL-----------DEQLTPDQL-DEMIEEIDTDASGTVDFDGE 57
++ +GYI + + EI+ A+ +++ TP++ +++ ++DT+ G + + E
Sbjct: 110 LDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLE-E 168
Query: 58 F 58
F
Sbjct: 169 F 169
Score = 26.0 bits (57), Expect = 1.8
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 9 QINSHGYIPTSSLREILAALDEQLTPDQL-DEMIEEIDTDASGTVDFDGEF 58
+ G++ ++I + + + D + GT+DF EF
Sbjct: 36 RDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFR-EF 85
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 26.4 bits (58), Expect = 1.1
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 10 INSHGYIPTSSLREILAA------------LDEQLTPDQLDEMIEEIDTDASGTVDFDGE 57
IN GYI + +I+ A L E ++ +++D + G V D E
Sbjct: 149 INKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTID-E 207
Query: 58 F 58
F
Sbjct: 208 F 208
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F,
structural GE oxidoreductase; HET: NDP; 1.60A
{Escherichia coli} SCOP: c.1.7.1
Length = 346
Score = 26.4 bits (59), Expect = 1.2
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 21 LREILAALDEQLTPDQLDEMIEEI 44
L+ + +L +L+ D L E IE +
Sbjct: 315 LKTNIESLHLELSEDVLAE-IEAV 337
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 26.2 bits (57), Expect = 1.6
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 13/61 (21%)
Query: 10 INSHGYIPTSSLREILAA------------LDEQLTPDQLDEMIEEIDTDASGTVDFDGE 57
IN G I + I+ + L E + ++ +++D + G V D E
Sbjct: 176 INKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTID-E 234
Query: 58 F 58
F
Sbjct: 235 F 235
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 26.1 bits (57), Expect = 1.7
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 10 INSHGYIPTSSLREILAAL--------DEQLTPDQL----DEMIEEIDTDASGTVDFDGE 57
IN GYI + +I+ A+ L D D +++D + G V D E
Sbjct: 136 INKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLD-E 194
Query: 58 F 58
F
Sbjct: 195 F 195
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR,
AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans}
Length = 348
Score = 25.6 bits (57), Expect = 1.9
Identities = 3/24 (12%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 21 LREILAALDEQLTPDQLDEMIEEI 44
+ + LT ++ +++I
Sbjct: 306 VSGVKDVFGWSLTDEEKKA-VDDI 328
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 25.6 bits (56), Expect = 2.1
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 10 INSHGYIPTSSLREILAAL-----------DEQLTPDQL-DEMIEEIDTDASGTVDFDGE 57
+++ GYI + + +I+ A+ +E+ TP++ D + +D +A G + E
Sbjct: 110 LDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQ-E 168
Query: 58 F 58
F
Sbjct: 169 F 169
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 25.5 bits (56), Expect = 2.1
Identities = 11/63 (17%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 10 INSHGYIPTSSLREILAAL-----------DEQLTPDQL-DEMIEEIDTDASGTVDFDGE 57
++++G I + I+ A+ +++ TP++ +++ +D + G + + E
Sbjct: 110 LDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLE-E 168
Query: 58 FDE 60
F E
Sbjct: 169 FCE 171
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel,
oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1
PDB: 1pz0_A*
Length = 312
Score = 25.6 bits (57), Expect = 2.3
Identities = 4/24 (16%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 21 LREILAALDEQLTPDQLDEMIEEI 44
L + + D L+ + + I+++
Sbjct: 286 LIDNIKTADVTLSQEDISF-IDKL 308
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic
resistance, breakage-reunion domain, struct genomics;
HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB:
3ifz_A*
Length = 470
Score = 25.5 bits (57), Expect = 2.5
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 38 DEMIEEIDTDASGTVDFDGEFDERQ 62
EM+ EID + TVDF +D R
Sbjct: 109 MEMLREIDEE---TVDFIPNYDGRV 130
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C,
ortholog, iodide ION S phasing, structural genomics;
HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB:
3ol4_A
Length = 107
Score = 25.1 bits (55), Expect = 2.5
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 10/60 (16%)
Query: 8 EQINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAAGSI 67
E + Y +LA L LT D++ + I G + ++
Sbjct: 26 EGVPPKDYFA------LLALLKRSLTEDEVVRAAQAILRSTDG----QSPVTDDDIRNAV 75
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A
{Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A*
2yid_A*
Length = 868
Score = 25.6 bits (57), Expect = 2.5
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 2 DQDLDQE-QINSHGYIPTSSLREILAALDE 30
DLD+E +++ + LR+IL+ L +
Sbjct: 53 LWDLDREFKVDGFAGVQRKKLRDILSVLRD 82
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 25.6 bits (57), Expect = 2.7
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 2 DQDLDQE-QINSHGYIPTSSLREILAALDE 30
DLD+E +++ + LR+IL+ L +
Sbjct: 298 LWDLDREFKVDGFAGVQRKKLRDILSVLRD 327
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 25.1 bits (54), Expect = 4.2
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 14 GYIPTSSLREILAALDEQLTPDQLDEMIEEIDTDASGTVDFDG 56
G + +R + A +L ++ D +DFD
Sbjct: 622 GSMSAYEMRMAIEAAGFKLPCQLHQVIVARFA-DDELIIDFDN 663
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial
transcription repressor, DNA B protein; 1.80A
{Mycobacterium tuberculosis} SCOP: a.4.5.39
Length = 138
Score = 24.5 bits (53), Expect = 4.3
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 19 SSLREILAALDEQLTPDQLDEMIEEID 45
S + L E++ D+ D + +
Sbjct: 94 GSRQAALVHFVERVGADEADALRRALA 120
>3s40_A Diacylglycerol kinase; structural genomics, the center for
structural genomics of infectious diseases, csgid,
transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Length = 304
Score = 24.6 bits (54), Expect = 4.5
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 16 IPTSSLREILAALDEQLTPDQLDEMIE-------EIDTDASGTVDFDGEF 58
+ ++ ++ + ++L D + I I+T+ VD DGE
Sbjct: 229 VKSTGIQAFKDYIGKKLFEDSNENDIFHVKAKSIHIETEEEKEVDTDGES 278
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Length = 692
Score = 24.6 bits (54), Expect = 4.7
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 38 DEMIEEIDTDASGTVDFDGEFDERQ 62
E++ +I+ D T+DF +D +
Sbjct: 334 LELLRDINKD---TIDFIDNYDGNE 355
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 24.4 bits (53), Expect = 4.8
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 10 INSHGYIPTSSLREILAA------------LDEQLTPDQLDEMIEEIDTDASGTVDFDGE 57
IN GYI + +I+ A L E +D +++D + G V D E
Sbjct: 103 INKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLD-E 161
Query: 58 F 58
F
Sbjct: 162 F 162
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel,
transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Length = 276
Score = 24.5 bits (54), Expect = 4.9
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 31 QLTPDQLDEMIEEI 44
QLTP + ++ E+
Sbjct: 257 QLTPGEFARLMGEL 270
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 24.6 bits (53), Expect = 5.5
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 5/80 (6%)
Query: 9 QINSHGYIPTSSLREILAALDEQLTPDQL-DEMIEEIDTDASGTVDFDGEFDERQAAGSI 67
+ G I + I A P + D++ GT+D F E A +
Sbjct: 44 KDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLD----FKEYVIALHM 99
Query: 68 PARGKISTQQIEFMEMMTGD 87
GK + + + D
Sbjct: 100 TTAGKTNQKLEWAFSLYDVD 119
Score = 24.2 bits (52), Expect = 6.6
Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 15/63 (23%)
Query: 10 INSHGYIPTSSLREILAAL-------------DEQLTPDQL-DEMIEEIDTDASGTVDFD 55
++ +G I + + EI+ A+ D++ TP++ +++ + + +
Sbjct: 118 VDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEK 177
Query: 56 GEF 58
EF
Sbjct: 178 -EF 179
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 24.4 bits (53), Expect = 5.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 15 YIPTSSLREILAALDEQLTPDQLDEMIEE 43
YI S L E+L A+ + P QL E ++E
Sbjct: 311 YIRESKLSEVLQAVTDHDIPQQLVERLQE 339
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate,
synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase;
HET: PEP; 2.25A {Pyrococcus furiosus}
Length = 262
Score = 24.5 bits (54), Expect = 5.6
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 31 QLTPDQLDEMIEEI 44
QLT D ++++E+
Sbjct: 242 QLTFDDFLQLLKEL 255
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 24.5 bits (54), Expect = 5.9
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 15 YIPTSSLREILAALDEQLTPDQLDEMIEEIDTDA 48
+P E L + P++L++++ +I
Sbjct: 82 VVPAGVSLEGLRKAN----PEKLEDVLTQIMEST 111
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 24.1 bits (53), Expect = 6.1
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 34 PDQLDEMIEEIDTDASGTVD 53
++ + E++D + G +D
Sbjct: 66 ESEVRSLFEQVDREQQGRLD 85
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Length = 345
Score = 24.4 bits (54), Expect = 6.4
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 24 ILAALDEQLTPDQLDEMIEEIDTDASGTVDFDGEFDER-QAAGSIP 68
+L + + L + ++ D + F G+ + G +P
Sbjct: 110 LLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQGDLVAHLEEVGEVP 155
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
oxidoreductase, phospholipid biosynthesis; HET: EPE;
2.10A {Coxiella burnetii}
Length = 356
Score = 24.4 bits (54), Expect = 6.6
Identities = 2/22 (9%), Positives = 9/22 (40%)
Query: 16 IPTSSLREILAALDEQLTPDQL 37
+P+ + E++ + +
Sbjct: 107 VPSFAFHEVITRMKPLIDAKTR 128
>3bjn_A Transcriptional regulator, putative; putative transcriptional
regulator ICLR, ST genomics, PSI-2; HET: MSE; 1.65A
{Vibrio cholerae o1 biovar eltor str}
Length = 165
Score = 24.1 bits (53), Expect = 7.0
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 15 YIPTSSLREILAALDEQLTPDQLDEMIEEI 44
Y+P + +IL E T D+ E+I
Sbjct: 76 YMPAARCEKILRYFGEDPTLDKWQSEFEKI 105
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 24.3 bits (53), Expect = 7.1
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 45 DTDASGTVDFDGEFDERQAAGSIPARGKISTQQIEF 80
D D S +FD +++ + P Q+ F
Sbjct: 357 DIDTS---NFDDLEEDKGEEETFPIPKAFVGNQLPF 389
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 24.1 bits (53), Expect = 7.5
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 15 YIPTSSLREILAALDE--------QLTPDQLDEMIEEIDTDASGTVDFDGEFDERQAA 64
+P + E+L+ L L P +L E++EE+ D D + A
Sbjct: 74 LLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDD--LADALQAVRKEDPA 129
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 24.0 bits (53), Expect = 7.9
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 20 SLREILAALDEQLTPDQLDEMI 41
++ E+ A+ + L L M+
Sbjct: 454 TVMEV--AISKGLDASALTIML 473
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional
3-deoxy-7-phosphoheptulonate synthase/chorismat listeria
monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB:
3tfc_A*
Length = 385
Score = 24.0 bits (52), Expect = 8.6
Identities = 3/14 (21%), Positives = 6/14 (42%)
Query: 31 QLTPDQLDEMIEEI 44
Q+ + +E I
Sbjct: 361 QMDIPEFEEFWNAI 374
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 23.9 bits (52), Expect = 8.7
Identities = 4/25 (16%), Positives = 10/25 (40%), Gaps = 3/25 (12%)
Query: 38 DEMIEEIDTDASGTVDFDGEFDERQ 62
+ ++ E+ T ++ FD
Sbjct: 398 ELLLSELGQG---TSEWQDNFDGSL 419
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2*
3m9s_2*
Length = 181
Score = 23.7 bits (52), Expect = 8.8
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 13/36 (36%)
Query: 9 QINSHGYIPTSSLREILAALDEQLTPDQLDEMIEEI 44
Q+N Y+ E +T +L+ ++ +
Sbjct: 135 QVNDEPYV-------------ECVTRARLEALLAGL 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.130 0.351
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,436,957
Number of extensions: 81087
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 295
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.3 bits)