Query psy15709
Match_columns 121
No_of_seqs 143 out of 1662
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 19:28:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 2.7E-29 5.9E-34 147.1 12.5 119 1-121 28-146 (160)
2 KOG0027|consensus 100.0 1.8E-27 3.8E-32 141.0 12.4 121 1-121 16-139 (151)
3 KOG0028|consensus 99.9 3.8E-26 8.2E-31 131.7 12.3 120 1-121 41-160 (172)
4 PTZ00183 centrin; Provisional 99.9 1.1E-22 2.5E-27 121.1 14.0 119 2-121 26-144 (158)
5 PTZ00184 calmodulin; Provision 99.9 2.1E-22 4.6E-27 118.7 13.3 119 2-121 20-138 (149)
6 KOG0031|consensus 99.9 7.7E-21 1.7E-25 109.3 12.6 116 1-121 40-155 (171)
7 KOG0030|consensus 99.9 3.8E-21 8.2E-26 108.8 9.0 120 1-121 19-141 (152)
8 KOG0037|consensus 99.8 3.8E-18 8.3E-23 103.5 12.7 111 2-120 66-177 (221)
9 KOG0044|consensus 99.8 1.8E-17 3.9E-22 100.5 11.5 114 6-121 40-165 (193)
10 KOG0036|consensus 99.7 8.5E-17 1.8E-21 105.5 12.2 113 2-121 23-136 (463)
11 KOG0034|consensus 99.7 6.4E-16 1.4E-20 93.7 12.1 115 2-121 42-165 (187)
12 PLN02964 phosphatidylserine de 99.6 8.1E-15 1.8E-19 102.6 11.6 105 1-111 151-273 (644)
13 KOG4223|consensus 99.5 1.4E-13 3.1E-18 88.1 7.9 119 3-121 173-295 (325)
14 KOG0037|consensus 99.5 2.9E-13 6.2E-18 82.5 8.4 83 2-92 133-217 (221)
15 KOG0027|consensus 99.5 8.3E-13 1.8E-17 78.3 9.1 92 28-121 7-103 (151)
16 cd05022 S-100A13 S-100A13: S-1 99.4 3.9E-13 8.4E-18 72.6 5.6 56 66-121 7-65 (89)
17 KOG0044|consensus 99.4 1E-12 2.2E-17 79.9 8.0 94 2-95 73-175 (193)
18 KOG0038|consensus 99.4 1.1E-12 2.3E-17 75.5 7.1 88 33-121 75-167 (189)
19 PTZ00183 centrin; Provisional 99.4 5E-12 1.1E-16 75.2 10.1 92 2-95 62-154 (158)
20 COG5126 FRQ1 Ca2+-binding prot 99.4 6.3E-12 1.4E-16 74.2 9.6 94 25-121 13-110 (160)
21 PF13499 EF-hand_7: EF-hand do 99.4 1.4E-12 3.1E-17 66.8 5.0 62 31-92 2-65 (66)
22 PTZ00184 calmodulin; Provision 99.4 1.9E-11 4E-16 71.9 10.2 92 1-94 55-147 (149)
23 KOG4223|consensus 99.4 6.5E-12 1.4E-16 80.6 8.4 120 2-121 86-218 (325)
24 cd05027 S-100B S-100B: S-100B 99.4 4.4E-12 9.6E-17 68.5 6.5 56 66-121 7-69 (88)
25 PF13833 EF-hand_8: EF-hand do 99.3 1E-11 2.2E-16 61.2 6.5 52 6-57 1-53 (54)
26 cd05022 S-100A13 S-100A13: S-1 99.3 5.9E-12 1.3E-16 68.0 5.6 58 2-59 17-77 (89)
27 PF13499 EF-hand_7: EF-hand do 99.3 2.7E-11 5.9E-16 62.0 7.0 53 69-121 2-58 (66)
28 cd05027 S-100B S-100B: S-100B 99.3 2.6E-11 5.7E-16 65.5 6.4 58 1-58 16-80 (88)
29 KOG0034|consensus 99.2 2.3E-10 5E-15 69.6 9.9 95 2-96 75-176 (187)
30 KOG0028|consensus 99.2 2.6E-10 5.7E-15 66.6 9.0 91 29-121 33-124 (172)
31 cd05031 S-100A10_like S-100A10 99.2 1.1E-10 2.3E-15 64.0 6.6 57 65-121 6-69 (94)
32 cd05029 S-100A6 S-100A6: S-100 99.2 1.1E-10 2.4E-15 63.0 6.5 55 67-121 10-69 (88)
33 KOG0377|consensus 99.2 6.3E-10 1.4E-14 74.6 10.6 119 1-121 472-605 (631)
34 cd05029 S-100A6 S-100A6: S-100 99.2 1.7E-10 3.7E-15 62.3 6.4 58 2-59 19-81 (88)
35 PF14658 EF-hand_9: EF-hand do 99.2 2.9E-10 6.3E-15 57.3 6.6 58 1-58 6-65 (66)
36 cd05025 S-100A1 S-100A1: S-100 99.2 2.5E-10 5.3E-15 62.3 7.0 57 65-121 7-70 (92)
37 cd05025 S-100A1 S-100A1: S-100 99.2 1.9E-10 4.1E-15 62.7 6.2 59 1-59 17-82 (92)
38 cd05031 S-100A10_like S-100A10 99.1 2.1E-10 4.6E-15 62.8 6.1 57 2-58 17-80 (94)
39 cd00052 EH Eps15 homology doma 99.1 3.9E-10 8.5E-15 57.7 6.7 55 2-58 8-62 (67)
40 PLN02964 phosphatidylserine de 99.1 1.1E-09 2.4E-14 77.3 10.6 89 29-121 143-233 (644)
41 cd00052 EH Eps15 homology doma 99.1 3.5E-10 7.5E-15 57.9 6.0 58 33-94 3-60 (67)
42 cd05026 S-100Z S-100Z: S-100Z 99.1 4.6E-10 1E-14 61.3 6.6 56 66-121 9-71 (93)
43 smart00027 EH Eps15 homology d 99.1 7.4E-10 1.6E-14 60.9 6.9 62 30-95 11-72 (96)
44 cd05026 S-100Z S-100Z: S-100Z 99.1 7.1E-10 1.5E-14 60.6 6.4 58 2-59 19-83 (93)
45 cd00051 EFh EF-hand, calcium b 99.1 1.2E-09 2.7E-14 54.5 6.6 54 2-55 9-62 (63)
46 KOG0040|consensus 99.1 2.4E-09 5.2E-14 80.2 10.0 104 1-112 2261-2371(2399)
47 cd00213 S-100 S-100: S-100 dom 99.0 1.3E-09 2.8E-14 58.9 6.5 57 65-121 6-69 (88)
48 smart00027 EH Eps15 homology d 99.0 1.6E-09 3.4E-14 59.6 6.3 58 1-60 18-75 (96)
49 cd00213 S-100 S-100: S-100 dom 99.0 1.1E-09 2.4E-14 59.2 5.4 57 2-58 17-80 (88)
50 cd00051 EFh EF-hand, calcium b 99.0 2.2E-09 4.7E-14 53.6 6.0 59 32-92 3-61 (63)
51 PF13833 EF-hand_8: EF-hand do 99.0 8.3E-10 1.8E-14 54.3 3.9 51 43-94 2-52 (54)
52 KOG0036|consensus 99.0 1E-08 2.2E-13 68.2 9.2 88 28-121 13-100 (463)
53 PF00036 EF-hand_1: EF hand; 98.9 1.2E-09 2.5E-14 46.7 3.0 28 69-96 2-29 (29)
54 cd05023 S-100A11 S-100A11: S-1 98.9 8.5E-09 1.8E-13 55.8 6.4 57 65-121 7-70 (89)
55 cd05023 S-100A11 S-100A11: S-1 98.9 9.4E-09 2E-13 55.6 6.4 57 2-58 19-81 (89)
56 cd00252 SPARC_EC SPARC_EC; ext 98.8 2.2E-08 4.8E-13 56.6 5.9 64 25-94 44-107 (116)
57 cd00252 SPARC_EC SPARC_EC; ext 98.8 4.8E-08 1E-12 55.3 7.3 54 64-121 45-98 (116)
58 PF14658 EF-hand_9: EF-hand do 98.8 1.3E-08 2.8E-13 51.4 4.3 50 72-121 3-54 (66)
59 PF13405 EF-hand_6: EF-hand do 98.8 8.8E-09 1.9E-13 44.8 3.1 30 68-97 1-31 (31)
60 cd05030 calgranulins Calgranul 98.8 2.7E-08 5.8E-13 53.8 5.6 54 6-59 23-81 (88)
61 KOG0030|consensus 98.7 2.7E-08 5.8E-13 57.1 4.8 55 1-56 96-150 (152)
62 cd05030 calgranulins Calgranul 98.7 6E-08 1.3E-12 52.4 5.6 56 66-121 7-69 (88)
63 PF00036 EF-hand_1: EF hand; 98.7 4.9E-08 1.1E-12 41.6 3.9 28 30-57 1-28 (29)
64 KOG2562|consensus 98.7 1.9E-07 4.1E-12 63.1 7.6 114 2-120 287-413 (493)
65 KOG0031|consensus 98.6 1.5E-07 3.2E-12 55.0 5.7 47 66-112 31-77 (171)
66 PF14788 EF-hand_10: EF hand; 98.6 3.8E-07 8.1E-12 43.6 5.8 49 10-58 2-50 (51)
67 KOG0041|consensus 98.6 6.5E-07 1.4E-11 54.6 7.5 91 2-92 108-200 (244)
68 KOG0041|consensus 98.6 3.1E-07 6.6E-12 56.0 5.9 55 67-121 99-153 (244)
69 PF13202 EF-hand_5: EF hand; P 98.5 2E-07 4.4E-12 38.3 2.5 24 69-92 1-24 (25)
70 KOG0038|consensus 98.4 1.8E-06 4E-11 50.2 6.8 94 2-95 80-177 (189)
71 KOG2643|consensus 98.4 2.5E-06 5.4E-11 57.6 7.5 116 2-121 295-443 (489)
72 PRK12309 transaldolase/EF-hand 98.4 3.5E-06 7.6E-11 57.0 7.8 58 23-95 328-385 (391)
73 cd05024 S-100A10 S-100A10: A s 98.3 4.5E-06 9.8E-11 45.1 6.7 53 6-58 20-77 (91)
74 KOG4251|consensus 98.3 3.3E-06 7.1E-11 53.3 6.7 56 3-58 111-169 (362)
75 KOG2643|consensus 98.3 7.8E-06 1.7E-10 55.3 8.7 89 1-95 241-346 (489)
76 cd05024 S-100A10 S-100A10: A s 98.2 1.1E-05 2.4E-10 43.6 6.7 54 67-121 8-66 (91)
77 PF14788 EF-hand_10: EF hand; 98.2 6.5E-06 1.4E-10 39.4 5.0 50 45-96 1-50 (51)
78 KOG0751|consensus 98.1 5E-05 1.1E-09 52.4 9.3 44 67-110 179-222 (694)
79 PRK12309 transaldolase/EF-hand 98.1 4.5E-05 9.7E-10 51.8 8.8 46 63-121 330-375 (391)
80 PF13202 EF-hand_5: EF hand; P 98.1 1.1E-05 2.4E-10 33.1 3.5 25 31-55 1-25 (25)
81 KOG4666|consensus 97.9 1.5E-05 3.2E-10 52.2 4.0 89 29-120 259-348 (412)
82 PF13405 EF-hand_6: EF-hand do 97.9 3.1E-05 6.6E-10 33.4 3.8 27 30-56 1-27 (31)
83 KOG0040|consensus 97.9 0.00012 2.6E-09 56.4 8.6 89 26-114 2247-2345(2399)
84 KOG0377|consensus 97.8 0.00011 2.4E-09 50.2 7.0 93 5-97 511-617 (631)
85 KOG0169|consensus 97.8 0.00026 5.7E-09 51.1 9.1 108 2-115 145-254 (746)
86 smart00054 EFh EF-hand, calciu 97.8 4.3E-05 9.3E-10 31.5 2.9 27 69-95 2-28 (29)
87 KOG4666|consensus 97.7 0.00013 2.9E-09 47.9 5.9 94 1-97 267-361 (412)
88 PF10591 SPARC_Ca_bdg: Secrete 97.7 0.00015 3.2E-09 41.0 5.0 56 64-121 51-106 (113)
89 KOG0751|consensus 97.6 0.00078 1.7E-08 46.8 8.7 90 3-96 46-137 (694)
90 PF12763 EF-hand_4: Cytoskelet 97.6 0.00056 1.2E-08 38.1 6.3 58 32-94 13-70 (104)
91 PF10591 SPARC_Ca_bdg: Secrete 97.5 6.2E-05 1.3E-09 42.5 2.2 61 27-91 52-112 (113)
92 PF09279 EF-hand_like: Phospho 97.5 0.00041 8.8E-09 36.9 5.2 66 30-96 1-70 (83)
93 PF12763 EF-hand_4: Cytoskelet 97.5 0.00037 8.1E-09 38.8 5.0 54 65-121 8-61 (104)
94 KOG2562|consensus 97.4 0.0016 3.4E-08 44.9 8.1 115 2-121 234-369 (493)
95 smart00054 EFh EF-hand, calciu 97.3 0.00048 1E-08 28.1 3.1 27 31-57 2-28 (29)
96 PF05042 Caleosin: Caleosin re 97.3 0.00069 1.5E-08 40.8 4.5 95 1-95 15-124 (174)
97 KOG1029|consensus 97.2 0.005 1.1E-07 45.2 8.7 112 6-121 28-247 (1118)
98 KOG4251|consensus 97.2 0.0016 3.6E-08 41.4 5.4 67 29-95 101-168 (362)
99 KOG4065|consensus 97.1 0.0046 9.9E-08 34.8 6.1 54 1-54 75-142 (144)
100 KOG0046|consensus 96.9 0.0033 7.2E-08 44.0 5.5 58 2-60 28-88 (627)
101 PF09279 EF-hand_like: Phospho 96.9 0.0034 7.3E-08 33.3 4.3 47 68-115 1-49 (83)
102 KOG4347|consensus 96.7 0.0063 1.4E-07 43.6 5.6 77 10-89 535-612 (671)
103 KOG0046|consensus 96.5 0.013 2.7E-07 41.3 6.0 72 25-97 12-87 (627)
104 KOG0035|consensus 96.5 0.017 3.7E-07 43.2 6.8 88 2-91 756-848 (890)
105 KOG4065|consensus 96.4 0.01 2.2E-07 33.5 4.4 52 70-121 70-135 (144)
106 PLN02952 phosphoinositide phos 96.4 0.034 7.4E-07 40.2 7.8 66 44-110 15-82 (599)
107 PLN02952 phosphoinositide phos 96.4 0.081 1.8E-06 38.3 9.6 89 6-95 13-110 (599)
108 KOG1707|consensus 95.9 0.14 3E-06 36.8 8.7 96 2-97 204-345 (625)
109 KOG4347|consensus 95.7 0.03 6.6E-07 40.3 5.0 71 46-117 535-605 (671)
110 KOG0169|consensus 95.5 0.23 4.9E-06 36.7 8.9 82 26-112 133-214 (746)
111 PF05517 p25-alpha: p25-alpha 95.5 0.16 3.4E-06 30.4 6.9 56 5-60 14-72 (154)
112 KOG1265|consensus 95.4 0.87 1.9E-05 34.8 11.3 106 4-117 159-281 (1189)
113 KOG3555|consensus 95.2 0.094 2E-06 35.3 5.6 66 26-97 247-312 (434)
114 KOG4578|consensus 94.8 0.023 5E-07 37.8 2.1 65 30-95 334-398 (421)
115 PF08726 EFhand_Ca_insen: Ca2+ 94.5 0.053 1.1E-06 27.9 2.6 40 65-112 4-43 (69)
116 PF05042 Caleosin: Caleosin re 94.4 0.63 1.4E-05 28.4 7.3 68 26-94 93-165 (174)
117 PF14513 DAG_kinase_N: Diacylg 93.9 0.68 1.5E-05 27.2 6.7 66 44-113 6-79 (138)
118 KOG3555|consensus 93.4 0.21 4.5E-06 33.7 4.4 54 64-121 247-300 (434)
119 PF11116 DUF2624: Protein of u 93.0 0.31 6.7E-06 26.1 3.9 31 82-112 13-43 (85)
120 KOG4578|consensus 93.0 0.14 3E-06 34.3 3.1 59 2-60 342-401 (421)
121 PF14513 DAG_kinase_N: Diacylg 92.8 0.55 1.2E-05 27.6 5.2 71 7-80 5-82 (138)
122 PLN02228 Phosphoinositide phos 92.4 1.3 2.7E-05 32.3 7.4 69 25-95 20-92 (567)
123 KOG0042|consensus 92.3 0.29 6.2E-06 35.3 4.1 59 2-60 602-660 (680)
124 KOG2871|consensus 92.2 0.17 3.6E-06 34.5 2.7 48 63-110 305-352 (449)
125 PF05099 TerB: Tellurite resis 92.0 0.38 8.2E-06 27.9 3.9 80 6-88 36-117 (140)
126 PF03672 UPF0154: Uncharacteri 91.7 0.77 1.7E-05 23.2 4.2 32 7-38 29-60 (64)
127 KOG0042|consensus 91.1 0.36 7.8E-06 34.8 3.6 54 67-120 593-646 (680)
128 cd07313 terB_like_2 tellurium 91.1 1.6 3.4E-05 24.0 8.0 83 7-92 13-97 (104)
129 PF08414 NADPH_Ox: Respiratory 90.8 1.7 3.7E-05 24.0 5.9 62 27-95 28-92 (100)
130 COG3763 Uncharacterized protei 90.7 1.1 2.3E-05 23.0 4.2 33 7-39 36-68 (71)
131 PRK00523 hypothetical protein; 90.5 1.1 2.3E-05 23.2 4.1 32 7-38 37-68 (72)
132 KOG3449|consensus 90.2 1.9 4.1E-05 24.2 5.2 43 70-112 4-46 (112)
133 KOG2243|consensus 89.7 1.1 2.3E-05 36.4 5.1 53 2-55 4066-4118(5019)
134 KOG1955|consensus 89.6 1.1 2.4E-05 32.0 4.9 65 26-94 225-292 (737)
135 KOG2243|consensus 89.4 0.65 1.4E-05 37.5 4.0 47 71-118 4061-4107(5019)
136 KOG1955|consensus 89.3 2 4.2E-05 30.8 5.9 47 6-54 244-290 (737)
137 PF07879 PHB_acc_N: PHB/PHA ac 88.6 1.2 2.5E-05 22.5 3.3 41 74-114 10-60 (64)
138 PRK01844 hypothetical protein; 88.4 1.9 4.2E-05 22.3 4.1 32 7-38 36-67 (72)
139 PF07308 DUF1456: Protein of u 88.4 2.2 4.8E-05 21.8 5.0 46 10-55 14-59 (68)
140 PF08976 DUF1880: Domain of un 88.2 0.6 1.3E-05 26.5 2.4 34 25-58 3-36 (118)
141 PF03979 Sigma70_r1_1: Sigma-7 88.1 0.88 1.9E-05 24.1 3.0 30 81-112 19-48 (82)
142 PLN02222 phosphoinositide phos 88.0 3.9 8.5E-05 30.0 6.9 68 26-95 22-90 (581)
143 cd08315 Death_TRAILR_DR4_DR5 D 87.4 1.8 3.9E-05 23.7 4.0 14 45-58 16-29 (96)
144 PF03672 UPF0154: Uncharacteri 87.4 2 4.4E-05 21.7 3.8 42 70-112 19-60 (64)
145 KOG1265|consensus 87.1 13 0.00027 29.1 9.5 81 12-95 207-299 (1189)
146 PF12174 RST: RCD1-SRO-TAF4 (R 86.9 2.9 6.3E-05 21.5 5.1 46 45-95 8-53 (70)
147 PF11116 DUF2624: Protein of u 86.5 3.6 7.7E-05 22.1 8.2 68 9-76 14-82 (85)
148 COG2036 HHT1 Histones H3 and H 86.2 3.9 8.4E-05 22.3 5.7 83 8-99 2-87 (91)
149 KOG1029|consensus 85.8 1.3 2.7E-05 33.5 3.5 49 3-53 205-253 (1118)
150 PRK00523 hypothetical protein; 85.1 2.9 6.3E-05 21.6 3.7 42 70-112 27-68 (72)
151 PF09069 EF-hand_3: EF-hand; 85.0 2.3 5E-05 23.1 3.5 28 67-95 3-30 (90)
152 PF09068 EF-hand_2: EF hand; 84.7 5.8 0.00013 23.0 6.6 71 26-96 38-126 (127)
153 PTZ00373 60S Acidic ribosomal 84.2 5.7 0.00012 22.5 5.5 43 71-113 7-49 (112)
154 PF06384 ICAT: Beta-catenin-in 83.2 2.5 5.3E-05 22.3 3.0 23 88-110 21-43 (78)
155 PF08461 HTH_12: Ribonuclease 83.2 3 6.6E-05 21.1 3.4 36 81-116 11-46 (66)
156 KOG3449|consensus 82.9 6.3 0.00014 22.2 4.7 45 4-53 12-56 (112)
157 PF00404 Dockerin_1: Dockerin 82.8 2.1 4.6E-05 16.5 2.4 16 3-18 1-16 (21)
158 PF04558 tRNA_synt_1c_R1: Glut 82.6 2.7 5.8E-05 25.5 3.5 48 63-111 81-128 (164)
159 PF05517 p25-alpha: p25-alpha 82.4 8.3 0.00018 23.1 6.4 65 33-97 3-71 (154)
160 KOG3866|consensus 82.3 4.4 9.4E-05 27.4 4.6 58 1-58 252-325 (442)
161 TIGR01848 PHA_reg_PhaR polyhyd 82.3 3.7 8E-05 23.0 3.7 64 38-113 12-79 (107)
162 PRK01844 hypothetical protein; 81.5 5 0.00011 20.8 3.7 42 70-112 26-67 (72)
163 KOG0035|consensus 81.0 18 0.00038 28.2 7.7 69 29-97 747-818 (890)
164 PF07308 DUF1456: Protein of u 81.0 4.8 0.0001 20.6 3.6 42 67-112 17-62 (68)
165 COG3763 Uncharacterized protei 80.6 5.4 0.00012 20.5 3.6 41 71-112 27-67 (71)
166 KOG4004|consensus 80.5 0.65 1.4E-05 29.0 0.4 48 42-93 201-248 (259)
167 KOG3866|consensus 79.9 6.5 0.00014 26.6 4.8 83 12-94 226-323 (442)
168 KOG1707|consensus 79.5 7.3 0.00016 28.6 5.2 48 65-112 193-241 (625)
169 cd08315 Death_TRAILR_DR4_DR5 D 79.5 8.2 0.00018 21.2 7.3 27 83-109 64-90 (96)
170 PF12174 RST: RCD1-SRO-TAF4 (R 79.4 3.4 7.4E-05 21.3 2.8 51 7-60 6-56 (70)
171 PLN02230 phosphoinositide phos 79.3 17 0.00036 27.0 7.0 69 26-95 26-102 (598)
172 COG4103 Uncharacterized protei 79.1 11 0.00024 22.4 7.7 95 6-105 41-140 (148)
173 PF01023 S_100: S-100/ICaBP ty 79.1 5.1 0.00011 18.5 3.3 29 67-95 6-36 (44)
174 cd05833 Ribosomal_P2 Ribosomal 78.1 10 0.00022 21.4 5.5 42 71-112 5-46 (109)
175 PF13331 DUF4093: Domain of un 77.2 5.6 0.00012 21.4 3.3 58 45-110 30-87 (87)
176 PRK14981 DNA-directed RNA poly 76.8 6.6 0.00014 22.2 3.7 29 84-112 79-107 (112)
177 PRK09430 djlA Dna-J like membr 76.3 19 0.00042 23.7 10.9 99 6-112 68-175 (267)
178 cd07894 Adenylation_RNA_ligase 76.2 16 0.00035 25.1 6.0 103 5-107 137-250 (342)
179 PF02761 Cbl_N2: CBL proto-onc 76.2 10 0.00022 20.4 6.3 71 25-98 3-73 (85)
180 PF09336 Vps4_C: Vps4 C termin 75.4 6.9 0.00015 19.6 3.2 25 83-107 29-53 (62)
181 PF01885 PTS_2-RNA: RNA 2'-pho 74.7 6.6 0.00014 24.4 3.6 36 77-112 26-61 (186)
182 cd06404 PB1_aPKC PB1 domain is 74.4 9.2 0.0002 20.5 3.6 17 44-60 18-34 (83)
183 TIGR01209 RNA ligase, Pab1020 73.3 27 0.00059 24.4 6.5 106 2-107 166-283 (374)
184 cd00076 H4 Histone H4, one of 72.9 13 0.00027 20.0 7.4 66 25-99 13-81 (85)
185 PRK00819 RNA 2'-phosphotransfe 72.6 9.9 0.00022 23.5 4.0 35 77-111 27-61 (179)
186 PF07128 DUF1380: Protein of u 72.2 9 0.00019 22.6 3.5 31 84-114 27-57 (139)
187 TIGR00135 gatC glutamyl-tRNA(G 72.2 9.9 0.00022 20.5 3.6 28 84-111 1-28 (93)
188 PLN02230 phosphoinositide phos 71.3 16 0.00035 27.1 5.3 49 63-112 25-76 (598)
189 cd08316 Death_FAS_TNFRSF6 Deat 71.3 15 0.00033 20.2 7.6 78 9-111 17-94 (97)
190 KOG4403|consensus 70.7 4.1 9E-05 28.7 2.2 75 26-105 65-140 (575)
191 PLN00138 large subunit ribosom 69.8 18 0.00039 20.6 5.4 41 72-112 6-46 (113)
192 PF09069 EF-hand_3: EF-hand; 69.6 16 0.00035 19.9 7.2 64 29-95 3-75 (90)
193 PRK00034 gatC aspartyl/glutamy 69.3 13 0.00028 20.1 3.7 29 83-111 2-30 (95)
194 COG1460 Uncharacterized protei 68.9 12 0.00025 21.4 3.4 30 84-113 80-109 (114)
195 TIGR01848 PHA_reg_PhaR polyhyd 68.2 19 0.00042 20.2 7.3 53 1-53 11-73 (107)
196 PF09107 SelB-wing_3: Elongati 67.9 12 0.00026 17.8 3.2 30 81-115 8-37 (50)
197 PF07862 Nif11: Nitrogen fixat 67.8 8.8 0.00019 17.9 2.5 21 11-31 28-48 (49)
198 PF09682 Holin_LLH: Phage holi 67.7 11 0.00025 21.0 3.3 40 73-112 57-100 (108)
199 PF01885 PTS_2-RNA: RNA 2'-pho 67.7 13 0.00027 23.1 3.7 36 4-39 27-62 (186)
200 PF11848 DUF3368: Domain of un 67.5 12 0.00026 17.6 3.8 32 81-112 15-47 (48)
201 KOG0506|consensus 67.4 43 0.00093 24.4 6.5 53 6-58 99-159 (622)
202 PRK00819 RNA 2'-phosphotransfe 67.3 17 0.00037 22.5 4.2 43 4-49 28-70 (179)
203 cd08313 Death_TNFR1 Death doma 66.9 13 0.00029 19.7 3.2 26 83-110 8-33 (80)
204 KOG0039|consensus 66.6 17 0.00036 27.3 4.7 65 46-118 4-76 (646)
205 TIGR01639 P_fal_TIGR01639 Plas 65.7 15 0.00033 18.2 4.0 31 8-38 8-38 (61)
206 cd07176 terB tellurite resista 65.5 20 0.00044 19.5 5.2 79 7-89 16-99 (111)
207 PTZ00373 60S Acidic ribosomal 64.9 24 0.00052 20.1 4.6 43 6-53 16-58 (112)
208 cd06395 PB1_Map2k5 PB1 domain 64.8 9.2 0.0002 20.3 2.3 46 44-95 21-68 (91)
209 PF03874 RNA_pol_Rpb4: RNA pol 64.5 14 0.0003 20.8 3.3 27 86-112 87-113 (117)
210 PF12949 HeH: HeH/LEM domain; 64.5 6 0.00013 17.4 1.4 27 83-109 3-33 (35)
211 KOG0998|consensus 64.4 6 0.00013 30.5 2.2 54 66-121 282-335 (847)
212 COG2818 Tag 3-methyladenine DN 64.1 9.8 0.00021 23.7 2.7 34 65-98 53-86 (188)
213 cd04411 Ribosomal_P1_P2_L12p R 63.9 24 0.00052 19.8 5.6 29 84-112 17-45 (105)
214 PF04695 Pex14_N: Peroxisomal 63.8 27 0.00059 20.4 6.3 47 67-115 4-50 (136)
215 KOG1264|consensus 63.5 20 0.00043 27.9 4.5 88 6-95 157-249 (1267)
216 PF10281 Ish1: Putative stress 62.7 13 0.00028 16.4 2.4 16 85-100 5-20 (38)
217 KOG4403|consensus 62.0 44 0.00094 23.9 5.7 55 41-95 40-96 (575)
218 KOG0871|consensus 62.0 32 0.0007 20.6 4.8 30 70-99 53-82 (156)
219 PF08349 DUF1722: Protein of u 61.5 28 0.0006 19.7 5.2 29 68-96 70-98 (117)
220 TIGR02675 tape_meas_nterm tape 61.2 12 0.00026 19.5 2.4 15 7-21 28-42 (75)
221 PTZ00015 histone H4; Provision 61.1 27 0.00059 19.5 7.6 77 14-99 19-98 (102)
222 PLN02222 phosphoinositide phos 60.8 34 0.00074 25.4 5.3 46 65-112 23-70 (581)
223 COG0721 GatC Asp-tRNAAsn/Glu-t 59.1 25 0.00053 19.3 3.5 28 83-110 2-29 (96)
224 TIGR03798 ocin_TIGR03798 bacte 58.9 22 0.00048 17.7 3.8 26 84-109 25-50 (64)
225 KOG1785|consensus 58.2 65 0.0014 22.9 6.4 82 9-95 190-274 (563)
226 PF04963 Sigma54_CBD: Sigma-54 57.6 35 0.00076 21.3 4.4 47 5-54 46-95 (194)
227 smart00657 RPOL4c DNA-directed 57.3 23 0.0005 20.1 3.4 30 83-112 82-111 (118)
228 PLN02228 Phosphoinositide phos 57.3 45 0.00097 24.8 5.4 50 63-114 20-71 (567)
229 PF04361 DUF494: Protein of un 57.2 41 0.00089 20.3 5.6 43 67-111 3-46 (155)
230 PLN02223 phosphoinositide phos 56.9 78 0.0017 23.4 7.0 69 26-95 13-92 (537)
231 COG1423 ATP-dependent DNA liga 56.9 64 0.0014 22.4 5.8 94 4-97 176-281 (382)
232 cd00086 homeodomain Homeodomai 56.6 21 0.00046 16.8 5.6 39 66-111 12-50 (59)
233 PF14164 YqzH: YqzH-like prote 56.6 21 0.00046 18.1 2.7 44 67-110 8-55 (64)
234 PF06627 DUF1153: Protein of u 56.3 32 0.00068 18.7 4.0 31 81-116 47-77 (90)
235 PLN00035 histone H4; Provision 55.9 35 0.00076 19.1 8.4 80 11-99 15-97 (103)
236 cd08815 Death_TNFRSF25_DR3 Dea 55.4 29 0.00063 18.3 3.2 21 83-105 8-28 (77)
237 PF00046 Homeobox: Homeobox do 55.3 23 0.00049 16.8 4.4 28 81-110 22-49 (57)
238 cd08784 Death_DRs Death Domain 55.0 29 0.00063 18.1 3.3 22 84-107 9-30 (79)
239 PF13829 DUF4191: Domain of un 54.6 34 0.00073 22.1 4.0 40 73-112 157-196 (224)
240 PF09312 SurA_N: SurA N-termin 54.5 38 0.00083 19.1 4.9 40 64-107 67-106 (118)
241 cd00893 PI4Kc_III Phosphoinosi 54.4 64 0.0014 21.7 8.1 69 42-110 195-263 (289)
242 KOG0039|consensus 54.4 69 0.0015 24.2 6.1 82 7-95 2-89 (646)
243 PLN00138 large subunit ribosom 54.3 39 0.00085 19.2 4.5 43 6-53 14-56 (113)
244 KOG0506|consensus 54.2 27 0.00058 25.3 3.8 43 70-112 89-131 (622)
245 PLN02859 glutamine-tRNA ligase 53.7 1.1E+02 0.0023 24.0 9.7 49 63-112 83-131 (788)
246 PF12631 GTPase_Cys_C: Catalyt 53.5 29 0.00063 17.8 3.1 46 67-112 23-72 (73)
247 PRK06402 rpl12p 50S ribosomal 53.4 40 0.00086 19.0 5.5 30 83-112 16-45 (106)
248 KOG0998|consensus 53.0 5.3 0.00011 30.8 0.4 60 31-94 285-344 (847)
249 PF13592 HTH_33: Winged helix- 52.5 28 0.00061 17.0 3.6 31 82-112 3-34 (60)
250 PF02885 Glycos_trans_3N: Glyc 52.4 30 0.00065 17.3 5.8 44 64-110 15-59 (66)
251 PF01316 Arg_repressor: Argini 52.1 33 0.00071 17.7 3.7 30 83-112 19-48 (70)
252 PF09373 PMBR: Pseudomurein-bi 52.0 19 0.00041 15.4 1.9 15 81-95 2-16 (33)
253 KOG2351|consensus 51.6 27 0.00058 20.3 2.9 28 85-112 100-127 (134)
254 PF07499 RuvA_C: RuvA, C-termi 51.2 26 0.00056 16.2 3.6 25 87-113 4-28 (47)
255 PF10437 Lip_prot_lig_C: Bacte 51.1 36 0.00079 17.9 4.7 43 11-55 43-86 (86)
256 PF12244 DUF3606: Protein of u 50.9 30 0.00066 16.9 3.7 25 86-112 20-44 (57)
257 PRK10945 gene expression modul 50.8 35 0.00077 17.7 3.4 41 47-96 7-47 (72)
258 TIGR00624 tag DNA-3-methyladen 50.5 18 0.00039 22.4 2.3 45 65-109 51-95 (179)
259 PF08044 DUF1707: Domain of un 50.1 27 0.00058 16.9 2.5 17 42-58 20-36 (53)
260 PF02761 Cbl_N2: CBL proto-onc 50.0 41 0.00088 18.1 5.7 51 9-59 22-72 (85)
261 PF14193 DUF4315: Domain of un 49.9 38 0.00083 18.1 3.2 13 83-95 47-59 (83)
262 PF09494 Slx4: Slx4 endonuclea 49.8 34 0.00073 17.1 3.6 19 81-99 42-60 (64)
263 TIGR02613 mob_myst_B mobile my 49.5 50 0.0011 20.4 4.2 20 5-24 127-146 (186)
264 PF12983 DUF3867: Protein of u 49.2 62 0.0014 20.0 5.1 51 42-98 33-87 (186)
265 KOG4286|consensus 49.0 37 0.0008 26.2 3.9 51 32-84 473-523 (966)
266 PF07553 Lipoprotein_Ltp: Host 48.8 31 0.00066 16.3 3.6 31 81-111 16-47 (48)
267 PF11422 IBP39: Initiator bind 48.2 66 0.0014 20.0 8.8 67 34-101 24-93 (181)
268 KOG0869|consensus 48.1 62 0.0013 19.7 4.8 30 70-99 73-102 (168)
269 PF13623 SurA_N_2: SurA N-term 47.9 45 0.00097 19.8 3.6 16 78-93 130-145 (145)
270 cd07316 terB_like_DjlA N-termi 47.7 45 0.00098 18.0 9.3 83 6-90 12-96 (106)
271 TIGR03573 WbuX N-acetyl sugar 47.6 41 0.00089 23.0 3.9 34 81-114 300-333 (343)
272 PF00427 PBS_linker_poly: Phyc 47.1 59 0.0013 19.1 4.2 52 42-95 41-98 (131)
273 PRK10353 3-methyl-adenine DNA 47.0 17 0.00036 22.7 1.8 34 65-98 52-85 (187)
274 KOG4070|consensus 46.7 40 0.00087 20.4 3.2 67 10-76 34-107 (180)
275 PF02337 Gag_p10: Retroviral G 46.0 39 0.00086 18.4 2.9 22 90-111 15-36 (90)
276 PF02459 Adeno_terminal: Adeno 45.6 65 0.0014 23.7 4.6 48 69-116 457-504 (548)
277 PF02845 CUE: CUE domain; Int 45.6 31 0.00066 15.4 3.6 24 90-113 5-28 (42)
278 TIGR02029 AcsF magnesium-proto 45.5 98 0.0021 21.2 5.4 74 20-95 26-101 (337)
279 PRK10391 oriC-binding nucleoid 45.2 41 0.00089 17.3 2.7 11 66-76 16-26 (71)
280 KOG4301|consensus 45.2 52 0.0011 22.8 3.9 60 33-95 114-173 (434)
281 PF13762 MNE1: Mitochondrial s 44.8 38 0.00082 20.2 3.0 46 67-112 80-125 (145)
282 PLN02223 phosphoinositide phos 44.7 91 0.002 23.1 5.3 48 64-112 13-65 (537)
283 PF11212 DUF2999: Protein of u 44.6 47 0.001 17.3 3.1 13 100-112 13-25 (82)
284 COG3860 Uncharacterized protei 44.4 51 0.0011 17.7 3.0 24 90-113 35-60 (89)
285 cd00074 H2A Histone 2A; H2A is 44.0 62 0.0013 18.5 5.1 47 67-119 57-103 (115)
286 PF10982 DUF2789: Protein of u 44.0 49 0.0011 17.3 3.1 32 12-43 5-36 (74)
287 TIGR01529 argR_whole arginine 43.4 71 0.0015 19.0 4.1 34 80-113 13-46 (146)
288 TIGR02436 conserved hypothetic 43.3 61 0.0013 18.2 4.9 48 42-95 46-93 (111)
289 TIGR03849 arch_ComA phosphosul 43.0 94 0.002 20.3 5.7 49 6-54 167-222 (237)
290 PF02037 SAP: SAP domain; Int 43.0 32 0.00068 14.8 3.7 18 83-100 3-20 (35)
291 PF09415 CENP-X: CENP-S associ 42.9 28 0.0006 18.0 2.0 30 67-96 39-68 (72)
292 PF10815 ComZ: ComZ; InterPro 42.8 43 0.00093 16.3 3.2 24 88-111 16-39 (56)
293 PF09061 Stirrup: Stirrup; In 42.6 12 0.00025 19.0 0.5 30 81-110 47-76 (79)
294 PF03000 NPH3: NPH3 family; I 42.6 99 0.0022 20.5 5.7 74 29-103 180-256 (258)
295 PF14848 HU-DNA_bdg: DNA-bindi 42.3 67 0.0015 18.4 4.1 31 81-111 26-56 (124)
296 smart00874 B5 tRNA synthetase 42.3 47 0.001 16.6 3.3 14 84-97 19-32 (71)
297 PF10056 DUF2293: Uncharacteri 42.2 35 0.00077 18.4 2.4 28 93-120 3-30 (86)
298 PF08672 APC2: Anaphase promot 41.9 47 0.001 16.5 3.8 29 66-95 14-44 (60)
299 CHL00185 ycf59 magnesium-proto 41.8 1.2E+02 0.0025 21.0 6.3 74 20-95 32-107 (351)
300 PHA02142 putative RNA ligase 41.6 12 0.00026 25.9 0.7 42 72-113 274-326 (366)
301 PF12419 DUF3670: SNF2 Helicas 41.3 75 0.0016 18.7 4.0 38 80-117 80-126 (141)
302 COG2058 RPP1A Ribosomal protei 40.9 69 0.0015 18.1 4.8 31 83-113 16-46 (109)
303 cd05831 Ribosomal_P1 Ribosomal 40.1 68 0.0015 17.9 4.3 32 81-112 15-46 (103)
304 PF08479 POTRA_2: POTRA domain 40.1 33 0.00072 17.5 2.1 35 78-112 8-43 (76)
305 PF08100 Dimerisation: Dimeris 40.0 33 0.00071 16.4 1.9 23 72-94 11-33 (51)
306 cd04752 Commd4 COMM_Domain con 40.0 89 0.0019 19.1 6.6 62 46-112 22-86 (174)
307 PF06207 DUF1002: Protein of u 39.9 99 0.0021 20.0 4.5 36 21-56 187-222 (225)
308 PF01369 Sec7: Sec7 domain; I 39.8 73 0.0016 19.7 3.8 89 15-113 89-186 (190)
309 cd05167 PI4Kc_III_alpha Phosph 39.6 1.2E+02 0.0027 20.7 7.3 66 45-110 220-285 (311)
310 PF10668 Phage_terminase: Phag 39.4 41 0.00089 16.8 2.2 31 70-106 10-40 (60)
311 COG5611 Predicted nucleic-acid 39.4 77 0.0017 18.3 5.8 44 67-110 21-66 (130)
312 KOG4286|consensus 39.1 1.9E+02 0.0041 22.7 7.8 90 26-115 417-518 (966)
313 PHA02105 hypothetical protein 39.0 53 0.0011 16.3 3.5 50 9-58 4-58 (68)
314 COG3820 Uncharacterized protei 38.9 30 0.00065 21.5 2.0 51 44-94 19-70 (230)
315 COG1859 KptA RNA:NAD 2'-phosph 38.9 78 0.0017 20.3 3.8 37 77-113 53-89 (211)
316 cd00171 Sec7 Sec7 domain; Doma 38.7 96 0.0021 19.2 10.2 38 76-113 142-181 (185)
317 PF05788 Orbi_VP1: Orbivirus R 37.9 58 0.0013 26.2 3.6 39 77-115 1131-1169(1301)
318 PF07521 RMMBL: RNA-metabolisi 37.9 44 0.00095 15.1 2.1 18 80-97 14-31 (43)
319 PRK12821 aspartyl/glutamyl-tRN 37.8 84 0.0018 22.7 4.2 35 78-112 383-417 (477)
320 PF13829 DUF4191: Domain of un 37.8 1.1E+02 0.0023 19.9 4.4 36 4-39 162-197 (224)
321 PF05321 HHA: Haemolysin expre 37.3 29 0.00063 17.1 1.4 22 88-109 11-32 (57)
322 PF12486 DUF3702: ImpA domain 37.2 59 0.0013 19.5 3.0 29 67-95 69-97 (148)
323 PF15144 DUF4576: Domain of un 37.1 18 0.00039 19.1 0.7 11 46-56 44-54 (88)
324 PRK13654 magnesium-protoporphy 36.4 1.5E+02 0.0032 20.6 6.3 73 20-94 36-110 (355)
325 PF02209 VHP: Villin headpiece 35.7 47 0.001 14.7 1.9 11 83-93 1-11 (36)
326 PF05872 DUF853: Bacterial pro 35.6 1.1E+02 0.0023 22.4 4.4 30 67-96 128-157 (502)
327 PF03352 Adenine_glyco: Methyl 35.6 16 0.00035 22.6 0.5 45 65-109 47-91 (179)
328 COG1059 Thermostable 8-oxoguan 35.5 1.2E+02 0.0026 19.3 5.2 23 79-101 66-88 (210)
329 COG1438 ArgR Arginine represso 35.4 68 0.0015 19.3 3.1 31 82-112 19-49 (150)
330 COG5250 RPB4 RNA polymerase II 35.1 68 0.0015 18.5 2.8 29 84-112 103-131 (138)
331 PF13624 SurA_N_3: SurA N-term 34.8 95 0.0021 18.1 3.7 27 82-110 119-145 (154)
332 PRK09389 (R)-citramalate synth 34.7 1.4E+02 0.0029 21.8 5.0 47 13-59 321-369 (488)
333 COG4807 Uncharacterized protei 34.4 1E+02 0.0022 18.2 7.3 91 13-112 19-127 (155)
334 TIGR00334 5S_RNA_mat_M5 ribonu 33.8 82 0.0018 19.5 3.3 56 45-109 118-173 (174)
335 cd05177 PI3Kc_C2_gamma Phospho 33.3 1.7E+02 0.0037 20.4 7.7 71 40-110 260-331 (354)
336 PF01988 VIT1: VIT family; In 33.1 58 0.0013 20.6 2.7 31 84-116 80-110 (213)
337 KOG2301|consensus 32.5 47 0.001 27.9 2.6 35 65-99 1415-1449(1592)
338 PRK04280 arginine repressor; P 32.3 96 0.0021 18.5 3.4 30 83-112 18-47 (148)
339 TIGR03685 L21P_arch 50S riboso 32.0 99 0.0022 17.4 5.4 31 83-113 16-46 (105)
340 PF06226 DUF1007: Protein of u 31.7 66 0.0014 20.4 2.8 26 71-96 54-79 (212)
341 PF03732 Retrotrans_gag: Retro 31.7 82 0.0018 16.3 6.4 61 45-107 26-88 (96)
342 cd07177 terB_like tellurium re 31.5 86 0.0019 16.5 6.8 78 7-90 13-95 (104)
343 PF06648 DUF1160: Protein of u 31.5 1.1E+02 0.0024 17.8 6.4 43 66-111 36-79 (122)
344 PF03484 B5: tRNA synthetase B 31.5 78 0.0017 16.0 2.8 16 97-112 16-31 (70)
345 PTZ00017 histone H2A; Provisio 31.4 1.2E+02 0.0025 18.0 4.8 47 67-119 64-110 (134)
346 PRK09462 fur ferric uptake reg 31.3 1.2E+02 0.0025 17.9 5.1 23 81-103 31-53 (148)
347 PF11460 DUF3007: Protein of u 31.3 1E+02 0.0022 17.3 3.2 22 87-112 81-102 (104)
348 PF01320 Colicin_Pyocin: Colic 31.3 93 0.002 16.8 3.4 60 46-112 10-74 (85)
349 PRK03430 hypothetical protein; 31.3 1.3E+02 0.0027 18.4 4.9 40 69-110 5-45 (157)
350 PRK03341 arginine repressor; P 30.6 1.3E+02 0.0029 18.4 3.9 34 80-113 26-59 (168)
351 KOG2419|consensus 30.5 50 0.0011 25.1 2.3 64 32-95 440-533 (975)
352 PTZ00315 2'-phosphotransferase 30.4 1.3E+02 0.0028 22.6 4.3 36 4-39 400-435 (582)
353 PF00690 Cation_ATPase_N: Cati 30.1 80 0.0017 15.7 4.2 30 69-98 6-35 (69)
354 PF07498 Rho_N: Rho terminatio 30.0 65 0.0014 14.6 3.9 24 84-107 5-32 (43)
355 cd01047 ACSF Aerobic Cyclase S 29.9 1.9E+02 0.004 19.9 6.3 74 20-95 16-91 (323)
356 PF07492 Trehalase_Ca-bi: Neut 29.7 20 0.00044 15.1 0.2 14 107-120 3-16 (30)
357 PF12238 MSA-2c: Merozoite sur 29.7 1.6E+02 0.0034 18.9 5.4 31 30-60 85-116 (205)
358 PF11181 YflT: Heat induced st 29.7 1E+02 0.0023 16.9 3.2 25 87-113 71-95 (103)
359 PF09012 FeoC: FeoC like trans 29.6 83 0.0018 15.7 2.6 28 81-113 12-39 (69)
360 COG4535 CorC Putative Mg2+ and 29.5 1.7E+02 0.0038 19.4 4.9 87 19-108 139-239 (293)
361 PF08002 DUF1697: Protein of u 29.5 39 0.00085 19.8 1.4 21 77-97 12-32 (137)
362 PRK00441 argR arginine repress 29.4 1.3E+02 0.0029 18.0 4.1 32 81-112 16-47 (149)
363 PF10897 DUF2713: Protein of u 29.4 1.6E+02 0.0034 18.8 4.3 43 42-84 174-226 (246)
364 PF09454 Vps23_core: Vps23 cor 29.4 76 0.0017 16.0 2.3 19 42-60 36-54 (65)
365 COG5502 Uncharacterized conser 29.3 1.3E+02 0.0028 17.8 6.0 52 42-97 72-125 (135)
366 PF09435 DUF2015: Fungal prote 29.3 1.3E+02 0.0027 17.7 3.9 36 78-113 76-114 (128)
367 PRK05066 arginine repressor; P 29.2 1.3E+02 0.0029 18.2 3.6 31 82-112 22-53 (156)
368 PRK00199 ihfB integration host 29.2 1E+02 0.0022 16.5 3.7 24 85-108 2-25 (94)
369 PF13099 DUF3944: Domain of un 28.8 65 0.0014 14.2 2.2 20 100-119 13-32 (35)
370 PF13344 Hydrolase_6: Haloacid 28.6 33 0.00071 18.8 1.0 24 81-104 39-62 (101)
371 PF09967 DUF2201: VWA-like dom 28.6 53 0.0011 18.9 1.8 18 79-96 6-23 (126)
372 KOG2116|consensus 28.6 68 0.0015 24.4 2.7 38 5-42 536-574 (738)
373 PTZ00056 glutathione peroxidas 28.3 1.1E+02 0.0023 19.1 3.3 33 44-81 163-195 (199)
374 PF09278 MerR-DNA-bind: MerR, 28.2 83 0.0018 15.3 3.1 18 90-109 7-24 (65)
375 TIGR00988 hip integration host 28.1 1.1E+02 0.0023 16.4 3.7 24 85-108 2-25 (94)
376 cd05168 PI4Kc_III_beta Phospho 28.1 2E+02 0.0042 19.5 7.0 69 42-110 196-267 (293)
377 PF01475 FUR: Ferric uptake re 27.4 1.2E+02 0.0026 16.9 3.6 38 71-109 12-49 (120)
378 COG4359 Uncharacterized conser 27.2 1.7E+02 0.0037 18.6 7.0 82 5-98 9-90 (220)
379 PF08339 RTX_C: RTX C-terminal 27.0 1.4E+02 0.0029 18.0 3.3 45 41-94 27-71 (145)
380 PF13075 DUF3939: Protein of u 27.0 26 0.00056 20.7 0.3 49 9-61 9-57 (140)
381 smart00414 H2A Histone 2A. 26.8 1.3E+02 0.0028 17.0 4.7 47 67-119 46-92 (106)
382 PF03395 Pox_P4A: Poxvirus P4A 26.8 2.8E+02 0.0062 22.0 5.5 26 83-110 549-574 (888)
383 KOG0928|consensus 26.4 3.1E+02 0.0067 23.2 5.8 33 44-76 660-692 (1386)
384 PF09441 Abp2: ARS binding pro 26.3 72 0.0016 19.5 2.1 17 65-81 34-50 (175)
385 PF01325 Fe_dep_repress: Iron 26.2 94 0.002 15.2 5.3 43 64-113 5-47 (60)
386 PF15601 Imm42: Immunity prote 26.2 84 0.0018 18.6 2.4 17 81-97 47-63 (134)
387 PRK06369 nac nascent polypepti 26.1 1.1E+02 0.0023 17.6 2.7 18 82-99 3-20 (115)
388 PLN00153 histone H2A; Provisio 26.0 1.5E+02 0.0032 17.4 5.0 47 67-119 61-107 (129)
389 PLN03228 methylthioalkylmalate 26.0 2.2E+02 0.0048 21.0 4.8 44 14-57 431-476 (503)
390 PF01698 FLO_LFY: Floricaula / 25.9 1.8E+02 0.0038 20.6 4.1 61 15-76 266-329 (386)
391 PF08235 LNS2: LNS2 (Lipin/Ned 25.8 56 0.0012 19.8 1.6 36 7-42 7-43 (157)
392 smart00389 HOX Homeodomain. DN 25.7 84 0.0018 14.5 5.1 27 83-111 24-50 (56)
393 cd00896 PI3Kc_III Phosphoinosi 25.7 2.4E+02 0.0051 19.7 8.1 69 42-110 254-325 (350)
394 cd05832 Ribosomal_L12p Ribosom 25.6 1.4E+02 0.003 16.9 5.4 31 83-113 16-46 (106)
395 PF08485 Polysacc_syn_2C: Poly 25.6 91 0.002 14.8 2.4 20 3-22 25-44 (48)
396 smart00576 BTP Bromodomain tra 25.5 1.1E+02 0.0024 15.8 5.8 25 76-100 51-75 (77)
397 PF11829 DUF3349: Protein of u 25.2 1.3E+02 0.0029 16.6 5.6 64 46-111 20-84 (96)
398 smart00513 SAP Putative DNA-bi 25.1 72 0.0016 13.5 4.1 17 83-99 3-19 (35)
399 PF09550 DUF2376: Conserved hy 25.1 87 0.0019 14.5 3.3 28 84-112 11-41 (43)
400 PF04157 EAP30: EAP30/Vps36 fa 25.0 1.9E+02 0.0042 18.4 6.2 11 14-24 62-72 (223)
401 PF03986 Autophagy_N: Autophag 24.9 50 0.0011 19.7 1.3 13 81-93 25-37 (145)
402 cd05166 PI3Kc_II Phosphoinosit 24.9 2.5E+02 0.0054 19.6 7.9 67 44-110 263-330 (353)
403 PF11569 Homez: Homeodomain le 24.9 1E+02 0.0022 15.2 2.4 29 81-111 20-48 (56)
404 PTZ00315 2'-phosphotransferase 24.6 1.6E+02 0.0035 22.1 4.0 35 77-111 399-433 (582)
405 PLN00157 histone H2A; Provisio 24.5 1.6E+02 0.0035 17.4 4.5 47 67-119 63-109 (132)
406 PF02119 FlgI: Flagellar P-rin 24.4 1.9E+02 0.004 20.2 4.0 31 82-114 301-331 (342)
407 COG5083 SMP2 Uncharacterized p 24.3 63 0.0014 23.4 1.9 38 5-42 381-419 (580)
408 KOG0903|consensus 24.2 3.6E+02 0.0078 21.3 6.3 64 48-112 756-823 (847)
409 PRK07571 bidirectional hydroge 24.2 1.8E+02 0.004 17.9 5.3 43 67-112 36-78 (169)
410 PF06296 DUF1044: Protein of u 24.2 1.1E+02 0.0024 17.7 2.5 38 74-111 75-114 (120)
411 TIGR03333 salvage_mtnX 2-hydro 24.2 1.9E+02 0.0041 18.0 6.6 81 7-99 7-88 (214)
412 COG5069 SAC6 Ca2+-binding acti 24.0 1.4E+02 0.0031 21.9 3.5 70 7-82 499-569 (612)
413 TIGR03830 CxxCG_CxxCG_HTH puta 24.0 1.5E+02 0.0031 16.7 5.3 29 79-109 60-88 (127)
414 cd05176 PI3Kc_C2_alpha Phospho 24.0 2.6E+02 0.0056 19.6 7.8 66 46-111 265-331 (353)
415 cd00179 SynN Syntaxin N-termin 24.0 1.6E+02 0.0035 17.1 3.5 25 87-111 117-141 (151)
416 PLN00156 histone H2AX; Provisi 23.7 1.7E+02 0.0038 17.4 5.1 47 67-119 66-112 (139)
417 PF14932 HAUS-augmin3: HAUS au 23.6 2.2E+02 0.0048 18.7 6.0 49 47-96 7-55 (256)
418 PF07766 LETM1: LETM1-like pro 23.5 1.1E+02 0.0024 20.2 2.8 35 78-112 214-251 (268)
419 PF14237 DUF4339: Domain of un 23.4 91 0.002 14.1 2.3 19 4-22 8-26 (45)
420 KOG1954|consensus 23.3 2E+02 0.0044 20.6 4.0 46 43-92 457-502 (532)
421 PF08920 SF3b1: Splicing facto 23.2 70 0.0015 19.1 1.7 13 97-109 84-96 (144)
422 cd01612 APG12_C Ubiquitin-like 23.2 1.4E+02 0.003 16.1 3.7 34 44-77 24-71 (87)
423 cd01102 Link_Domain The link d 23.2 1.3E+02 0.0029 16.4 2.6 38 73-110 3-41 (92)
424 TIGR02216 phage_TIGR02216 phag 23.1 1.2E+02 0.0025 15.2 3.4 29 84-112 25-57 (60)
425 PF13835 DUF4194: Domain of un 23.0 1.8E+02 0.0039 17.4 4.3 44 69-112 83-134 (166)
426 KOG2278|consensus 23.0 1.1E+02 0.0024 19.1 2.5 36 4-39 29-64 (207)
427 PF14771 DUF4476: Domain of un 22.9 1.4E+02 0.003 16.0 10.1 91 9-108 4-94 (95)
428 PF07848 PaaX: PaaX-like prote 22.7 1.3E+02 0.0027 15.5 4.7 40 71-112 8-47 (70)
429 COG5562 Phage envelope protein 22.6 48 0.001 19.6 0.9 19 5-23 84-102 (137)
430 COG3327 PaaX Phenylacetic acid 22.6 1.9E+02 0.0041 19.3 3.6 32 42-77 22-53 (291)
431 TIGR01425 SRP54_euk signal rec 22.5 3E+02 0.0066 19.8 5.2 28 30-60 314-341 (429)
432 PRK04387 hypothetical protein; 22.4 1.5E+02 0.0032 16.2 4.5 69 24-94 9-80 (90)
433 cd00045 DED The Death Effector 22.4 47 0.001 17.3 0.8 9 84-92 12-20 (77)
434 PF13543 KSR1-SAM: SAM like do 22.3 1.8E+02 0.0039 17.1 3.6 26 84-111 99-124 (129)
435 PF09832 DUF2059: Uncharacteri 22.3 85 0.0018 15.3 1.7 13 99-111 16-28 (64)
436 COG1325 Predicted exosome subu 22.2 95 0.0021 18.7 2.1 27 87-113 65-91 (149)
437 PF10415 FumaraseC_C: Fumarase 22.1 1.1E+02 0.0025 14.8 2.1 10 100-109 38-47 (55)
438 PF14133 DUF4300: Domain of un 22.1 1.4E+02 0.003 19.8 3.0 27 83-111 9-35 (250)
439 PF03131 bZIP_Maf: bZIP Maf tr 22.0 1.3E+02 0.0028 16.2 2.5 21 84-108 9-29 (92)
440 PF08812 YtxC: YtxC-like famil 21.8 48 0.001 21.2 0.9 32 72-104 148-180 (221)
441 cd08332 CARD_CASP2 Caspase act 21.8 1.5E+02 0.0032 16.0 4.5 12 44-55 64-75 (90)
442 PRK05988 formate dehydrogenase 21.8 2E+02 0.0043 17.4 5.9 40 70-112 26-65 (156)
443 TIGR02684 dnstrm_HI1420 probab 21.7 1.5E+02 0.0033 16.0 2.7 23 79-101 65-87 (89)
444 cd00894 PI3Kc_IB_gamma Phospho 21.7 3E+02 0.0065 19.4 6.7 78 33-110 262-341 (365)
445 cd08341 DED_Caspase_10_repeat1 21.6 78 0.0017 16.8 1.5 18 90-107 4-21 (82)
446 PF09828 Chrome_Resist: Chroma 21.6 1.9E+02 0.0042 17.1 5.7 48 44-95 60-108 (135)
447 cd02655 RNAP_beta'_C Largest s 21.6 1.7E+02 0.0037 18.7 3.2 28 85-112 74-101 (204)
448 PTZ00111 DNA replication licen 21.6 4.4E+02 0.0096 21.3 6.8 104 9-115 767-898 (915)
449 smart00540 LEM in nuclear memb 21.5 1.1E+02 0.0023 14.2 2.3 17 9-25 5-21 (44)
450 COG3448 CBS-domain-containing 21.5 2.1E+02 0.0046 19.7 3.7 29 84-112 203-233 (382)
451 PF04552 Sigma54_DBD: Sigma-54 21.4 66 0.0014 19.5 1.4 24 82-105 120-143 (160)
452 smart00153 VHP Villin headpiec 21.3 97 0.0021 13.6 2.2 11 83-93 1-11 (36)
453 cd08338 DED_PEA15 Death Effect 21.3 70 0.0015 17.1 1.3 17 91-107 5-21 (84)
454 TIGR00973 leuA_bact 2-isopropy 21.2 3.3E+02 0.0072 20.0 5.0 46 13-58 332-379 (494)
455 PRK11858 aksA trans-homoaconit 21.2 3E+02 0.0065 19.3 5.1 44 15-58 325-371 (378)
456 cd08336 DED_FADD Death Effecto 21.1 55 0.0012 17.3 0.9 9 84-92 14-22 (82)
457 cd01611 GABARAP Ubiquitin doma 20.9 1.8E+02 0.0039 16.5 3.5 17 44-60 49-65 (112)
458 KOG3040|consensus 20.8 1.3E+02 0.0027 19.6 2.5 22 10-31 51-72 (262)
459 PF08681 DUF1778: Protein of u 20.7 1.5E+02 0.0032 15.5 2.6 14 63-76 65-78 (80)
460 PF03948 Ribosomal_L9_C: Ribos 20.7 1.4E+02 0.003 16.0 2.4 21 82-102 30-51 (87)
461 smart00222 Sec7 Sec7 domain. D 20.6 2.2E+02 0.0049 17.6 10.2 37 77-113 145-183 (187)
462 PF01257 2Fe-2S_thioredx: Thio 20.6 2E+02 0.0043 17.0 3.6 41 69-112 15-55 (145)
463 PF09808 SNAPc_SNAP43: Small n 20.6 1.9E+02 0.004 18.0 3.3 28 29-58 4-31 (194)
464 PF08671 SinI: Anti-repressor 20.6 92 0.002 13.1 3.1 11 100-110 17-27 (30)
465 KOG0148|consensus 20.6 41 0.0009 22.5 0.4 70 26-97 18-87 (321)
466 PF15244 HSD3: Hydroxy-steroid 20.5 1.8E+02 0.004 20.8 3.4 32 65-96 380-411 (419)
467 PF09851 SHOCT: Short C-termin 20.5 91 0.002 13.0 3.3 14 81-94 14-27 (31)
468 PF09066 B2-adapt-app_C: Beta2 20.4 93 0.002 17.2 1.8 17 81-97 4-20 (114)
469 PF04876 Tenui_NCP: Tenuivirus 20.3 2.2E+02 0.0047 17.3 4.6 34 77-110 93-138 (175)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=2.7e-29 Score=147.09 Aligned_cols=119 Identities=26% Similarity=0.459 Sum_probs=114.1
Q ss_pred CCcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCC
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEE 80 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 80 (121)
+||++++|.|++.+|..+++.+|+.++..++..++..++. +.+.|+|.+|+.++...... ..+.++++.||+.||+++
T Consensus 28 l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~-~~~~Eel~~aF~~fD~d~ 105 (160)
T COG5126 28 LFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKR-GDKEEELREAFKLFDKDH 105 (160)
T ss_pred HhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhcc-CCcHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999999999999998 88999999999999998874 577899999999999999
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
+|+|+..+|+.++..+|.++++++++.+++.+|.+++|.|+
T Consensus 106 dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~ 146 (160)
T COG5126 106 DGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEID 146 (160)
T ss_pred CceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEe
Confidence 99999999999999999999999999999999999999985
No 2
>KOG0027|consensus
Probab=99.95 E-value=1.8e-27 Score=140.99 Aligned_cols=121 Identities=28% Similarity=0.427 Sum_probs=112.8
Q ss_pred CCcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchh---hHHHHHHHHHhhc
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDV---LEKELKEAFRLYD 77 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~---~~~~~~~~f~~~D 77 (121)
+||.+++|.|+..+|..+++.+|..|+..++..++..+|.+++|.|++.+|+.++......... ....++.||+.||
T Consensus 16 ~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD 95 (151)
T KOG0027|consen 16 LFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFD 95 (151)
T ss_pred HHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHc
Confidence 4899999999999999999999999999999999999999999999999999999888664211 3469999999999
Q ss_pred cCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 78 KEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 78 ~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
.+++|+|+..||+++|..+|.+++.++++.+++.+|.|+||.|+
T Consensus 96 ~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~ 139 (151)
T KOG0027|consen 96 KDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVN 139 (151)
T ss_pred cCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEe
Confidence 99999999999999999999999999999999999999999874
No 3
>KOG0028|consensus
Probab=99.94 E-value=3.8e-26 Score=131.75 Aligned_cols=120 Identities=24% Similarity=0.395 Sum_probs=114.6
Q ss_pred CCcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCC
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEE 80 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 80 (121)
+||.+++|+|+.++|+.+++.+|+.+..+++..++..+++++.|.|+|++|...+....... .+.++++.+|+.+|.++
T Consensus 41 lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~-dt~eEi~~afrl~D~D~ 119 (172)
T KOG0028|consen 41 LFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER-DTKEEIKKAFRLFDDDK 119 (172)
T ss_pred hhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc-CcHHHHHHHHHcccccC
Confidence 58899999999999999999999999999999999999999999999999999988877764 48899999999999999
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
+|.|+..+|+.+..++|+.++++++++|++.+|.+++|.||
T Consensus 120 ~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevn 160 (172)
T KOG0028|consen 120 TGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVN 160 (172)
T ss_pred CCCcCHHHHHHHHHHhCccccHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999986
No 4
>PTZ00183 centrin; Provisional
Probab=99.91 E-value=1.1e-22 Score=121.08 Aligned_cols=119 Identities=25% Similarity=0.411 Sum_probs=109.2
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCC
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEET 81 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 81 (121)
+|.+++|.|+..+|..+++.+|..++...+..++..++.+++|.|+|.+|+..+...... ......++.+|+.+|.+++
T Consensus 26 ~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~-~~~~~~l~~~F~~~D~~~~ 104 (158)
T PTZ00183 26 FDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE-RDPREEILKAFRLFDDDKT 104 (158)
T ss_pred hCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC-CCcHHHHHHHHHHhCCCCC
Confidence 789999999999999999999988899999999999999999999999999987765432 3455789999999999999
Q ss_pred CCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 82 HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 82 g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
|.|+..||+.++..+|..++++++..++..+|.+++|.|+
T Consensus 105 G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~ 144 (158)
T PTZ00183 105 GKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEIS 144 (158)
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCc
Confidence 9999999999999999999999999999999999999885
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.90 E-value=2.1e-22 Score=118.71 Aligned_cols=119 Identities=26% Similarity=0.449 Sum_probs=109.2
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCC
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEET 81 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 81 (121)
+|.+++|.|+..+|..++..++..++.+.+..++..++.+++|.|+|++|+.++...... ......++.+|+.+|.+++
T Consensus 20 ~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~~~~F~~~D~~~~ 98 (149)
T PTZ00184 20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD-TDSEEEIKEAFKVFDRDGN 98 (149)
T ss_pred HcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC-CcHHHHHHHHHHhhCCCCC
Confidence 689999999999999999999998999999999999999999999999999998766443 2345678999999999999
Q ss_pred CCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 82 HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 82 g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
|.|+.++++.++..+|..++.+++..+++.+|.+++|.|+
T Consensus 99 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~ 138 (149)
T PTZ00184 99 GFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQIN 138 (149)
T ss_pred CeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCc
Confidence 9999999999999999999999999999999999999985
No 6
>KOG0031|consensus
Probab=99.87 E-value=7.7e-21 Score=109.25 Aligned_cols=116 Identities=24% Similarity=0.375 Sum_probs=108.0
Q ss_pred CCcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCC
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEE 80 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 80 (121)
++|+|++|.|..++|+.++.++|..++++++..|+.. ..|.|+|.-|+.++...... ..+++.+..||+.||.++
T Consensus 40 ~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~g-tdpe~~I~~AF~~FD~~~ 114 (171)
T KOG0031|consen 40 LMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNG-TDPEEVILNAFKTFDDEG 114 (171)
T ss_pred HHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCccC
Confidence 5799999999999999999999999999999999976 46899999999999888776 477899999999999999
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
+|.|..+.|+.+|...|.+++++|++.+++.+-++..|.|+
T Consensus 115 ~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~d 155 (171)
T KOG0031|consen 115 SGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFD 155 (171)
T ss_pred CCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCcee
Confidence 99999999999999999999999999999999998888764
No 7
>KOG0030|consensus
Probab=99.86 E-value=3.8e-21 Score=108.78 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=106.9
Q ss_pred CCcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccC--CCCceeHHHHHHHHHhhccC-chhhHHHHHHHHHhhc
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVE--SGDKISFEEFLQVACHFLRD-DDVLEKELKEAFRLYD 77 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~~f~~~D 77 (121)
+||..++|.|+..+...+|+.+|.+|+..++.+....+..+ +-.+++|++|+.++..+.+. ...+.+.+-+.++.||
T Consensus 19 lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFD 98 (152)
T KOG0030|consen 19 LFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFD 98 (152)
T ss_pred HHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhc
Confidence 58999999999999999999999999999999999998766 45789999999999988774 2456688899999999
Q ss_pred cCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 78 KEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 78 ~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
++++|.|...||+++|..+|++++++|++.++.... |.+|.|+
T Consensus 99 keg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~ 141 (152)
T KOG0030|consen 99 KEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCIN 141 (152)
T ss_pred ccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCc
Confidence 999999999999999999999999999999998763 5566664
No 8
>KOG0037|consensus
Probab=99.80 E-value=3.8e-18 Score=103.49 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=101.7
Q ss_pred CcCCCCCccCHHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCC
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLG-HFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEE 80 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 80 (121)
-|++++|.|+.+||..+|.... -..+.+.|..|+..+|.+..|+|.+.||..++..+ ...+.+|+.||.|+
T Consensus 66 vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i--------~~Wr~vF~~~D~D~ 137 (221)
T KOG0037|consen 66 VDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI--------NQWRNVFRTYDRDR 137 (221)
T ss_pred hCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH--------HHHHHHHHhcccCC
Confidence 3889999999999999998554 46788999999999999999999999999998766 56899999999999
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCC
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSI 120 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i 120 (121)
+|.|+..||+.+|..+|..++++-.+.+++++|..++|.|
T Consensus 138 SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i 177 (221)
T KOG0037|consen 138 SGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRI 177 (221)
T ss_pred CCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCce
Confidence 9999999999999999999999999999999997777765
No 9
>KOG0044|consensus
Probab=99.77 E-value=1.8e-17 Score=100.49 Aligned_cols=114 Identities=23% Similarity=0.277 Sum_probs=97.8
Q ss_pred CCCccCHHHHHHHHHhcCCCCCH-HHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCc
Q psy15709 6 KRGTIEKEKVRTILNTLGHFIDD-VELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVS 84 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 84 (121)
.+|.++..+|+.+++.+....+. .-+..+|..+|.+++|.|+|.+|+..++...+ ....+.++.+|+.||.+++|+|
T Consensus 40 P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~r--Gt~eekl~w~F~lyD~dgdG~I 117 (193)
T KOG0044|consen 40 PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSR--GTLEEKLKWAFRLYDLDGDGYI 117 (193)
T ss_pred CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcC--CcHHHHhhhhheeecCCCCceE
Confidence 58999999999999988754444 44589999999999999999999999999988 6788999999999999999999
Q ss_pred CHHHHHHHHhhc----CC------c-CCHHHHHHHHHhhccCCCCCCC
Q psy15709 85 SRDVIVVCHFLR----DD------D-VQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 85 ~~~el~~~l~~~----~~------~-~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
+++|+..+++.. +. . -.++.+..+|+.+|.|+||.|+
T Consensus 118 t~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT 165 (193)
T KOG0044|consen 118 TKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLT 165 (193)
T ss_pred cHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCccc
Confidence 999999988863 31 1 2356678899999999999974
No 10
>KOG0036|consensus
Probab=99.74 E-value=8.5e-17 Score=105.52 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=106.1
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCC-CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCC
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHF-IDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEE 80 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 80 (121)
||.+++|.|+..++.+.+..+..+ +..+....++...|.+.+|.++|.+|..++ ...+.++..+|+.+|.+.
T Consensus 23 lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~-------~~~E~~l~~~F~~iD~~h 95 (463)
T KOG0036|consen 23 LDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYL-------DNKELELYRIFQSIDLEH 95 (463)
T ss_pred hccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHH-------HHhHHHHHHHHhhhcccc
Confidence 688999999999999999999887 778888999999999999999999999998 456778999999999999
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
+|.|...|+...|+.+|+++++++++.+++.+|+++++.|+
T Consensus 96 dG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~ 136 (463)
T KOG0036|consen 96 DGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATID 136 (463)
T ss_pred CCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeec
Confidence 99999999999999999999999999999999999998874
No 11
>KOG0034|consensus
Probab=99.71 E-value=6.4e-16 Score=93.65 Aligned_cols=115 Identities=22% Similarity=0.351 Sum_probs=92.5
Q ss_pred CcCC-CCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCc-eeHHHHHHHHHhhccCchhhHHHHHHHHHhhccC
Q psy15709 2 FDSG-KRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDK-ISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKE 79 (121)
Q Consensus 2 ~D~~-~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 79 (121)
+|.. ++|.++.+||..+. .+..+| ...++++.++.+++|. |+|++|+..+..+... .....+++-||+.||.+
T Consensus 42 l~~~~~~g~lt~eef~~i~-~~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~-~~~~~Kl~faF~vYD~~ 116 (187)
T KOG0034|consen 42 LDRNNGDGYLTKEEFLSIP-ELALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPK-ASKREKLRFAFRVYDLD 116 (187)
T ss_pred hccccccCccCHHHHHHHH-HHhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCC-ccHHHHHHHHHHHhcCC
Confidence 4666 89999999999998 344444 3456777888777777 9999999999988775 34456999999999999
Q ss_pred CCCCcCHHHHHHHHhhc-CCcCC--HHHH----HHHHHhhccCCCCCCC
Q psy15709 80 ETHVSSRDVIVVCHFLR-DDDVQ--EKEL----KEAFRLYDKEEPMSIV 121 (121)
Q Consensus 80 ~~g~i~~~el~~~l~~~-~~~~~--~~e~----~~~~~~~d~~~dg~i~ 121 (121)
++|+|+++|+..++..+ +...+ ++.+ +.++..+|.++||+|+
T Consensus 117 ~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~Is 165 (187)
T KOG0034|consen 117 GDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKIS 165 (187)
T ss_pred CCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCc
Confidence 99999999999999975 44444 5554 4567789999999985
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.63 E-value=8.1e-15 Score=102.58 Aligned_cols=105 Identities=16% Similarity=0.241 Sum_probs=90.6
Q ss_pred CCcCCCCCccCHHHHHHHHHhcC-CCCCHHH---HHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhh
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTLG-HFIDDVE---LETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLY 76 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~ 76 (121)
+||++++|.+ +..+++.+| ..++..+ ++.++..+|.+++|.|++.+|+.++..+.. ..+.++++.+|+.+
T Consensus 151 lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~--~~seEEL~eaFk~f 224 (644)
T PLN02964 151 LLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN--LVAANKKEELFKAA 224 (644)
T ss_pred HHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc--CCCHHHHHHHHHHh
Confidence 4799999997 889999999 5888887 799999999999999999999999987643 45678899999999
Q ss_pred ccCCCCCcCHHHHHHHHhh-------------cCCcCCH-HHHHHHHHh
Q psy15709 77 DKEETHVSSRDVIVVCHFL-------------RDDDVQE-KELKEAFRL 111 (121)
Q Consensus 77 D~~~~g~i~~~el~~~l~~-------------~~~~~~~-~e~~~~~~~ 111 (121)
|++++|+|+.+||+.++.. .+..++. +++..|++.
T Consensus 225 DkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~ 273 (644)
T PLN02964 225 DLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHM 273 (644)
T ss_pred CCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHH
Confidence 9999999999999999988 5666665 667777743
No 13
>KOG4223|consensus
Probab=99.50 E-value=1.4e-13 Score=88.12 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=96.6
Q ss_pred cCCCCCccCHHHHHHHHHhcCCC-CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhh---HHHHHHHHHhhcc
Q psy15709 3 DSGKRGTIEKEKVRTILNTLGHF-IDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVL---EKELKEAFRLYDK 78 (121)
Q Consensus 3 D~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~---~~~~~~~f~~~D~ 78 (121)
|.|++|.++.+||..+|.--..+ +..-.|+.-+...|+|++|+|+++||+.-+.........+ ..+-...+..+|+
T Consensus 173 D~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~Dk 252 (325)
T KOG4223|consen 173 DQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDK 252 (325)
T ss_pred ccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhc
Confidence 78999999999999999743333 3344567888899999999999999999877665411111 1223467788899
Q ss_pred CCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 79 EETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 79 ~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
|++|+++.+|++.++...+......+...++..+|.|+||+++
T Consensus 253 nkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs 295 (325)
T KOG4223|consen 253 NKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLS 295 (325)
T ss_pred CCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCcccccc
Confidence 9999999999999998888788999999999999999999975
No 14
>KOG0037|consensus
Probab=99.49 E-value=2.9e-13 Score=82.52 Aligned_cols=83 Identities=24% Similarity=0.430 Sum_probs=73.0
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCC
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEET 81 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 81 (121)
||+|++|+|+..||+.+|..+|+.++.+..+.++++++..+.|.|.|.+|+++|..+ ..+.++|+.+|++..
T Consensus 133 ~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L--------~~lt~~Fr~~D~~q~ 204 (221)
T KOG0037|consen 133 YDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL--------QRLTEAFRRRDTAQQ 204 (221)
T ss_pred cccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH--------HHHHHHHHHhccccc
Confidence 799999999999999999999999999999999999998778999999999999877 447899999999999
Q ss_pred CCcC--HHHHHHH
Q psy15709 82 HVSS--RDVIVVC 92 (121)
Q Consensus 82 g~i~--~~el~~~ 92 (121)
|.|+ .++|..+
T Consensus 205 G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 205 GSITISYDDFLQM 217 (221)
T ss_pred eeEEEeHHHHHHH
Confidence 8654 5555443
No 15
>KOG0027|consensus
Probab=99.47 E-value=8.3e-13 Score=78.28 Aligned_cols=92 Identities=24% Similarity=0.272 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcC-----CH
Q psy15709 28 DVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDV-----QE 102 (121)
Q Consensus 28 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~-----~~ 102 (121)
..++..+|..+|.+++|.|+..++-.++..+.. ..+..++..++..+|.+++|.|+.++|..++...+... +.
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~--~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQ--NPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 356788999999999999999999999998877 46789999999999999999999999999999765432 35
Q ss_pred HHHHHHHHhhccCCCCCCC
Q psy15709 103 KELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 103 ~e~~~~~~~~d~~~dg~i~ 121 (121)
+++.++|+.+|.|++|.|+
T Consensus 85 ~el~eaF~~fD~d~~G~Is 103 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFIS 103 (151)
T ss_pred HHHHHHHHHHccCCCCcCc
Confidence 6999999999999999985
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.44 E-value=3.9e-13 Score=72.57 Aligned_cols=56 Identities=9% Similarity=0.023 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhcc-CCCCCcCHHHHHHHHhh-cCCcCCH-HHHHHHHHhhccCCCCCCC
Q psy15709 66 EKELKEAFRLYDK-EETHVSSRDVIVVCHFL-RDDDVQE-KELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 66 ~~~~~~~f~~~D~-~~~g~i~~~el~~~l~~-~~~~~~~-~e~~~~~~~~d~~~dg~i~ 121 (121)
-..+..+|+.||. +++|+|+..||+.++.. +|..+++ ++++.+++.+|.|+||+|+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~ 65 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLS 65 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCc
Confidence 3567888999998 88899999999999987 8877887 8899999999999998885
No 17
>KOG0044|consensus
Probab=99.44 E-value=1e-12 Score=79.91 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=81.4
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccC---------chhhHHHHHHH
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRD---------DDVLEKELKEA 72 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~---------~~~~~~~~~~~ 72 (121)
||.+++|.|+..||..+|..+--....+.+...|..||.+++|.|++.+++.++..+..- ...+......+
T Consensus 73 fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~i 152 (193)
T KOG0044|consen 73 FDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKI 152 (193)
T ss_pred hcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHH
Confidence 799999999999999998877666667788889999999999999999999988776541 23467788999
Q ss_pred HHhhccCCCCCcCHHHHHHHHhh
Q psy15709 73 FRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 73 f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
|+.+|.+++|.||.+||...+..
T Consensus 153 f~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 153 FSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHcCCCCCCcccHHHHHHHhhh
Confidence 99999999999999999988764
No 18
>KOG0038|consensus
Probab=99.43 E-value=1.1e-12 Score=75.47 Aligned_cols=88 Identities=16% Similarity=0.263 Sum_probs=74.4
Q ss_pred HHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcC-CcCCHHHHH----H
Q psy15709 33 TVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRD-DDVQEKELK----E 107 (121)
Q Consensus 33 ~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~e~~----~ 107 (121)
++...+..+|.|.++|++|+.+++.+... ....-++..||+.||-+++++|..++|...+..+- ..++++|+. .
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~-APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEM-APRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhh-ChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 45667778999999999999998877664 35567788999999999999999999999999873 468998875 4
Q ss_pred HHHhhccCCCCCCC
Q psy15709 108 AFRLYDKEEPMSIV 121 (121)
Q Consensus 108 ~~~~~d~~~dg~i~ 121 (121)
+++++|.+|||+++
T Consensus 154 vieEAD~DgDgkl~ 167 (189)
T KOG0038|consen 154 VIEEADLDGDGKLS 167 (189)
T ss_pred HHHHhcCCCCCccc
Confidence 67789999999975
No 19
>PTZ00183 centrin; Provisional
Probab=99.42 E-value=5e-12 Score=75.17 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=79.0
Q ss_pred CcCCCCCccCHHHHHHHHHhc-CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCC
Q psy15709 2 FDSGKRGTIEKEKVRTILNTL-GHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEE 80 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 80 (121)
+|.+++|.|+..+|..++... ......+.+..+|..+|.+++|.|+..+|..++..... ......+..+|..+|.++
T Consensus 62 ~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~l~~~~~~~~~~~~d~~~ 139 (158)
T PTZ00183 62 VDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGE--TITDEELQEMIDEADRNG 139 (158)
T ss_pred hCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHHHHhCCCC
Confidence 688999999999999987653 34456778899999999999999999999999986643 345678999999999999
Q ss_pred CCCcCHHHHHHHHhh
Q psy15709 81 THVSSRDVIVVCHFL 95 (121)
Q Consensus 81 ~g~i~~~el~~~l~~ 95 (121)
+|.|+.++|..++..
T Consensus 140 ~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 140 DGEISEEEFYRIMKK 154 (158)
T ss_pred CCcCcHHHHHHHHhc
Confidence 999999999999864
No 20
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.40 E-value=6.3e-12 Score=74.22 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=80.3
Q ss_pred CCCHHH---HHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhc-CCcC
Q psy15709 25 FIDDVE---LETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLR-DDDV 100 (121)
Q Consensus 25 ~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~ 100 (121)
.++.++ +...|..+|.+++|.|++.++..++..+.. ..+...+..+|..+|. +.+.|+..+|..+|... ...-
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~--~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGF--NPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCC--CCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCC
Confidence 455555 456777779999999999999999986655 5778999999999999 99999999999999864 4456
Q ss_pred CHHHHHHHHHhhccCCCCCCC
Q psy15709 101 QEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 101 ~~~e~~~~~~~~d~~~dg~i~ 121 (121)
+++++..+|+.+|.|++|+|+
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is 110 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYIS 110 (160)
T ss_pred cHHHHHHHHHHhCCCCCceec
Confidence 799999999999999999985
No 21
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.37 E-value=1.4e-12 Score=66.85 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=33.9
Q ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhhccC--chhhHHHHHHHHHhhccCCCCCcCHHHHHHH
Q psy15709 31 LETVIDEINVESGDKISFEEFLQVACHFLRD--DDVLEKELKEAFRLYDKEETHVSSRDVIVVC 92 (121)
Q Consensus 31 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~ 92 (121)
+..+|..+|.+++|.|+.++|..++...... .......+..+|+.+|++++|.|+.+||..+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 4455666666666666666666665555442 2223344444566666666666666665554
No 22
>PTZ00184 calmodulin; Provisional
Probab=99.37 E-value=1.9e-11 Score=71.92 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=77.7
Q ss_pred CCcCCCCCccCHHHHHHHHHhc-CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccC
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTL-GHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKE 79 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 79 (121)
.+|.+++|.|+.++|..++... ......+.+..+|..+|.+++|.|+.++|..++..... ..+...+..+|+.+|.+
T Consensus 55 ~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~ 132 (149)
T PTZ00184 55 EVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE--KLTDEEVDEMIREADVD 132 (149)
T ss_pred hcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC--CCCHHHHHHHHHhcCCC
Confidence 3688999999999999988754 33455677899999999999999999999999877633 34567889999999999
Q ss_pred CCCCcCHHHHHHHHh
Q psy15709 80 ETHVSSRDVIVVCHF 94 (121)
Q Consensus 80 ~~g~i~~~el~~~l~ 94 (121)
++|.|+.+||..++.
T Consensus 133 ~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 133 GDGQINYEEFVKMMM 147 (149)
T ss_pred CCCcCcHHHHHHHHh
Confidence 999999999988874
No 23
>KOG4223|consensus
Probab=99.36 E-value=6.5e-12 Score=80.65 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=95.9
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhcc--------Cc----hhhHHHH
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR--------DD----DVLEKEL 69 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~--------~~----~~~~~~~ 69 (121)
+|.+++|.|+..++..++...-...-..+..+-+..++.+.+|.|+|+++......... .. ...-..-
T Consensus 86 iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rD 165 (325)
T KOG4223|consen 86 IDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARD 165 (325)
T ss_pred hcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHH
Confidence 68899999999999998875433444566777888899999999999999998765321 00 1112233
Q ss_pred HHHHHhhccCCCCCcCHHHHHHHHhh-cCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 70 KEAFRLYDKEETHVSSRDVIVVCHFL-RDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~el~~~l~~-~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
+.-|+..|.|++|.++++||..+|.. -.++|.+--|.+-+...|.|+||.|+
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~ 218 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKIS 218 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCcee
Confidence 56799999999999999999999984 46778999999999999999999985
No 24
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.36 E-value=4.4e-12 Score=68.48 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhc-cCCCC-CcCHHHHHHHHhh-----cCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 66 EKELKEAFRLYD-KEETH-VSSRDVIVVCHFL-----RDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 66 ~~~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-----~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
-..++.+|+.|| .+++| .|+.+||+.+|+. +|...++++++.+++.+|.|++|+|+
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~ 69 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECD 69 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCc
Confidence 367899999998 79999 5999999999999 88889999999999999999999986
No 25
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.33 E-value=1e-11 Score=61.17 Aligned_cols=52 Identities=29% Similarity=0.552 Sum_probs=48.4
Q ss_pred CCCccCHHHHHHHHHhcCCC-CCHHHHHHHHHHhccCCCCceeHHHHHHHHHh
Q psy15709 6 KRGTIEKEKVRTILNTLGHF-IDDVELETVIDEINVESGDKISFEEFLQVACH 57 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 57 (121)
.+|.|+.++|..++..+|.. ++.+++..++..+|.+++|.|+|.||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999889999 99999999999999999999999999998753
No 26
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.32 E-value=5.9e-12 Score=67.98 Aligned_cols=58 Identities=24% Similarity=0.488 Sum_probs=45.9
Q ss_pred CcC-CCCCccCHHHHHHHHHh-cCCCCCH-HHHHHHHHHhccCCCCceeHHHHHHHHHhhc
Q psy15709 2 FDS-GKRGTIEKEKVRTILNT-LGHFIDD-VELETVIDEINVESGDKISFEEFLQVACHFL 59 (121)
Q Consensus 2 ~D~-~~~g~i~~~el~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 59 (121)
||+ +++|+|+..||+.++.+ +|..++. +++..++..+|.+++|.|+|++|+.++..+.
T Consensus 17 fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 17 ASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 677 78888888888888887 7766666 7788888888888888888888888876653
No 27
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.29 E-value=2.7e-11 Score=62.03 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=34.0
Q ss_pred HHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHH----HHHHHHhhccCCCCCCC
Q psy15709 69 LKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKE----LKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e----~~~~~~~~d~~~dg~i~ 121 (121)
++.+|+.+|.+++|+|+.+||+.++..++..+++++ ++.+++.+|.|++|.|+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~ 58 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRIS 58 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEE
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCc
Confidence 566777777777777777777777777665444433 33346667777777663
No 28
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.27 E-value=2.6e-11 Score=65.47 Aligned_cols=58 Identities=12% Similarity=0.397 Sum_probs=53.2
Q ss_pred CCc-CCCCC-ccCHHHHHHHHHh-----cCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhh
Q psy15709 1 MFD-SGKRG-TIEKEKVRTILNT-----LGHFIDDVELETVIDEINVESGDKISFEEFLQVACHF 58 (121)
Q Consensus 1 ~~D-~~~~g-~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 58 (121)
+|| ++++| .|+..+|+.+|+. +|..++.+++..++..+|.+++|.|+|.+|+.++...
T Consensus 16 ~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 16 QYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 366 79999 5999999999999 8988999999999999999999999999999988765
No 29
>KOG0034|consensus
Probab=99.24 E-value=2.3e-10 Score=69.64 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=78.7
Q ss_pred CcCCCCCc-cCHHHHHHHHHhcCCCCCHH-HHHHHHHHhccCCCCceeHHHHHHHHHhhccCch-----hhHHHHHHHHH
Q psy15709 2 FDSGKRGT-IEKEKVRTILNTLGHFIDDV-ELETVIDEINVESGDKISFEEFLQVACHFLRDDD-----VLEKELKEAFR 74 (121)
Q Consensus 2 ~D~~~~g~-i~~~el~~~l~~~~~~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~-----~~~~~~~~~f~ 74 (121)
|+.+++|. |++++|...+..+-...+.. .++-.|+.||.+++|.|+.+++.+++..+..... ....-+...|.
T Consensus 75 f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~ 154 (187)
T KOG0034|consen 75 FDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFE 154 (187)
T ss_pred HhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 56777777 99999999999776555544 8899999999999999999999999998877421 22234567899
Q ss_pred hhccCCCCCcCHHHHHHHHhhc
Q psy15709 75 LYDKEETHVSSRDVIVVCHFLR 96 (121)
Q Consensus 75 ~~D~~~~g~i~~~el~~~l~~~ 96 (121)
.+|.+++|.|+.+|+.+++...
T Consensus 155 e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 155 EADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HhCCCCCCcCcHHHHHHHHHcC
Confidence 9999999999999999998754
No 30
>KOG0028|consensus
Probab=99.22 E-value=2.6e-10 Score=66.60 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=78.9
Q ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHh-hcCCcCCHHHHHH
Q psy15709 29 VELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHF-LRDDDVQEKELKE 107 (121)
Q Consensus 29 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~-~~~~~~~~~e~~~ 107 (121)
.+++..|..++.+++|.|+++++...+..+.- .....++..+..-+|++++|.|+.++|++.+. .++..-+.+++..
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGF--E~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~ 110 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGF--EPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKK 110 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCC--CcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHH
Confidence 56788899999999999999999666655544 34567889999999999999999999999987 4677779999999
Q ss_pred HHHhhccCCCCCCC
Q psy15709 108 AFRLYDKEEPMSIV 121 (121)
Q Consensus 108 ~~~~~d~~~dg~i~ 121 (121)
+|+.+|.+++|+|+
T Consensus 111 afrl~D~D~~Gkis 124 (172)
T KOG0028|consen 111 AFRLFDDDKTGKIS 124 (172)
T ss_pred HHHcccccCCCCcC
Confidence 99999999999986
No 31
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.20 E-value=1.1e-10 Score=63.98 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhhcc-CC-CCCcCHHHHHHHHhh-----cCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 65 LEKELKEAFRLYDK-EE-THVSSRDVIVVCHFL-----RDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 65 ~~~~~~~~f~~~D~-~~-~g~i~~~el~~~l~~-----~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
....+..+|+.||. ++ +|+|+.+||+.+++. +|..+++++++.+++.+|.+++|.|+
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~ 69 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVN 69 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCc
Confidence 45678999999997 87 699999999999986 46678999999999999999999986
No 32
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.20 E-value=1.1e-10 Score=63.03 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcc-CC-CCCcCHHHHHHHHh---hcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 67 KELKEAFRLYDK-EE-THVSSRDVIVVCHF---LRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 67 ~~~~~~f~~~D~-~~-~g~i~~~el~~~l~---~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
..+-.+|+.|+. ++ +|+|+.+||+++++ .+|.++++++++++++.+|.|++|+|+
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Id 69 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVN 69 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCc
Confidence 345566777765 45 66777777777775 256667777777777777777777764
No 33
>KOG0377|consensus
Probab=99.18 E-value=6.3e-10 Score=74.61 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=89.6
Q ss_pred CCcCCCCCccCHHHHHHHHHh-cCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCc----------hhhHHHH
Q psy15709 1 MFDSGKRGTIEKEKVRTILNT-LGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDD----------DVLEKEL 69 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~----------~~~~~~~ 69 (121)
++|...+|.|+..++..++.. +|++++...+..- ....+.+|.+.|......+..-.... .-....+
T Consensus 472 ~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~k--la~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~L 549 (631)
T KOG0377|consen 472 KYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPK--LANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSL 549 (631)
T ss_pred hcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhh--ccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhH
Confidence 478899999999999999975 3566665443322 22345677898888877654332210 0122457
Q ss_pred HHHHHhhccCCCCCcCHHHHHHHHhhcC----CcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 70 KEAFRLYDKEETHVSSRDVIVVCHFLRD----DDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~el~~~l~~~~----~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
+.+|+.+|.|++|.|+.+||+.++.-++ ..+++.++-++.+.+|.|+||.|+
T Consensus 550 etiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~ID 605 (631)
T KOG0377|consen 550 ETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKID 605 (631)
T ss_pred HHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCccc
Confidence 8899999999999999999999998754 568999999999999999999986
No 34
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.17 E-value=1.7e-10 Score=62.28 Aligned_cols=58 Identities=14% Similarity=0.509 Sum_probs=50.5
Q ss_pred CcC-CC-CCccCHHHHHHHHH---hcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhc
Q psy15709 2 FDS-GK-RGTIEKEKVRTILN---TLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFL 59 (121)
Q Consensus 2 ~D~-~~-~g~i~~~el~~~l~---~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 59 (121)
||. ++ +|+|+..||+.+++ .+|..++.+++..++..+|.+++|.|+|.+|+.++..+.
T Consensus 19 y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 19 YSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 444 55 78999999999996 368889999999999999999999999999999887653
No 35
>PF14658 EF-hand_9: EF-hand domain
Probab=99.17 E-value=2.9e-10 Score=57.34 Aligned_cols=58 Identities=24% Similarity=0.477 Sum_probs=54.2
Q ss_pred CCcCCCCCccCHHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCC-CceeHHHHHHHHHhh
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTLGH-FIDDVELETVIDEINVESG-DKISFEEFLQVACHF 58 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~~ 58 (121)
+||.++.|.|...++..+|+.++. .|++.+++.+...+|+++. |.|+++.|+..+..+
T Consensus 6 ~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 6 AFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred hcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 589999999999999999999998 8999999999999999888 999999999998754
No 36
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.17 E-value=2.5e-10 Score=62.29 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhhc-cCCCC-CcCHHHHHHHHhh-cCC----cCCHHHHHHHHHhhccCCCCCCC
Q psy15709 65 LEKELKEAFRLYD-KEETH-VSSRDVIVVCHFL-RDD----DVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 65 ~~~~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-~~~----~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
....++.+|+.|| .+++| .|+..||+.+|+. +|. ..++++++.+++.+|.+++|.|+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~ 70 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVD 70 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCc
Confidence 3467899999997 99999 5999999999985 553 46899999999999999999985
No 37
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.15 E-value=1.9e-10 Score=62.73 Aligned_cols=59 Identities=15% Similarity=0.373 Sum_probs=51.0
Q ss_pred CCc-CCCCC-ccCHHHHHHHHHh-cC----CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhc
Q psy15709 1 MFD-SGKRG-TIEKEKVRTILNT-LG----HFIDDVELETVIDEINVESGDKISFEEFLQVACHFL 59 (121)
Q Consensus 1 ~~D-~~~~g-~i~~~el~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 59 (121)
+|| ++++| .|+..+|+.+|+. +| ..++.+++..++..+|.+++|.|+|.+|+.++..+.
T Consensus 17 ~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 17 AHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 365 99999 5999999999985 44 457889999999999999999999999999887653
No 38
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.14 E-value=2.1e-10 Score=62.79 Aligned_cols=57 Identities=14% Similarity=0.500 Sum_probs=50.2
Q ss_pred CcC-CC-CCccCHHHHHHHHHh-----cCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhh
Q psy15709 2 FDS-GK-RGTIEKEKVRTILNT-----LGHFIDDVELETVIDEINVESGDKISFEEFLQVACHF 58 (121)
Q Consensus 2 ~D~-~~-~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 58 (121)
||. ++ +|.|+..||..+++. +|..++.+++..++..+|.+++|.|+|.+|+.++...
T Consensus 17 ~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 17 YAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 675 87 699999999999986 5678899999999999999999999999999988654
No 39
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.14 E-value=3.9e-10 Score=57.74 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=44.4
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhh
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHF 58 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 58 (121)
+|.+++|.|+..++..+++.+|. +.+++..++..++.+++|.|+|.+|+.++...
T Consensus 8 ~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 8 LDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 67888888888888888887764 67778888888888888888888888877544
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=99.13 E-value=1.1e-09 Score=77.32 Aligned_cols=89 Identities=11% Similarity=0.016 Sum_probs=70.7
Q ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhhc--cCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHH
Q psy15709 29 VELETVIDEINVESGDKISFEEFLQVACHFL--RDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELK 106 (121)
Q Consensus 29 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~--~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~ 106 (121)
+++...|..+|++++|.+ +.. ++..+. .+.......+..+|+.+|.+++|.|+.+||..++..++...+++++.
T Consensus 143 ~elkeaF~lfD~dgdG~i-Lg~---ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~ 218 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV-VGS---IFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKE 218 (644)
T ss_pred HHHHHHHHHHCCCCCCcC-HHH---HHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHH
Confidence 556778889999999997 333 333332 11111122489999999999999999999999999998888999999
Q ss_pred HHHHhhccCCCCCCC
Q psy15709 107 EAFRLYDKEEPMSIV 121 (121)
Q Consensus 107 ~~~~~~d~~~dg~i~ 121 (121)
.+|+.+|.|++|.|+
T Consensus 219 eaFk~fDkDgdG~Is 233 (644)
T PLN02964 219 ELFKAADLNGDGVVT 233 (644)
T ss_pred HHHHHhCCCCCCcCC
Confidence 999999999999985
No 41
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.12 E-value=3.5e-10 Score=57.93 Aligned_cols=58 Identities=10% Similarity=0.116 Sum_probs=30.6
Q ss_pred HHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHh
Q psy15709 33 TVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHF 94 (121)
Q Consensus 33 ~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 94 (121)
.+|..+|.+++|.|+.+++..++.... .+...+..+|+.+|.+++|.|+.++|..++.
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~g----~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKSG----LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHcC----CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 345555555555555555555554431 1334455555555555555555555555543
No 42
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.12 E-value=4.6e-10 Score=61.29 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhc-cCCCC-CcCHHHHHHHHhh-c----CCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 66 EKELKEAFRLYD-KEETH-VSSRDVIVVCHFL-R----DDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 66 ~~~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-~----~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
-..+..+|+.|| .+++| +|+..||+.++.. + +...++.+++.+++.+|.|++|.|+
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Id 71 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVD 71 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCC
Confidence 356788899999 78998 5999999999976 3 3345788999999999999999986
No 43
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.10 E-value=7.4e-10 Score=60.85 Aligned_cols=62 Identities=10% Similarity=0.160 Sum_probs=44.4
Q ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 30 ELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 30 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
.+..+|..+|.+++|.|++.++..++... ..+...+..+|+.+|.+++|.|+.+||..++..
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKS----GLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHc----CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 34666777777777888888887777663 234566777777788777888888877777654
No 44
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.08 E-value=7.1e-10 Score=60.55 Aligned_cols=58 Identities=12% Similarity=0.412 Sum_probs=48.6
Q ss_pred Cc-CCCCC-ccCHHHHHHHHHh-c----CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhc
Q psy15709 2 FD-SGKRG-TIEKEKVRTILNT-L----GHFIDDVELETVIDEINVESGDKISFEEFLQVACHFL 59 (121)
Q Consensus 2 ~D-~~~~g-~i~~~el~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 59 (121)
|| ++++| +|+..||+.++.. + ....+..++..++..+|.+++|.|+|.+|+.++..+.
T Consensus 19 ~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 19 YSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 55 78898 5999999999976 2 3345778999999999999999999999999987663
No 45
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.07 E-value=1.2e-09 Score=54.53 Aligned_cols=54 Identities=33% Similarity=0.669 Sum_probs=38.1
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVA 55 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 55 (121)
+|.+++|.|+..++..+++.++..++.+.+..++..++.+++|.|++.+|+.++
T Consensus 9 ~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 9 FDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred hCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 566777777777777777777767777777777777776667777777776553
No 46
>KOG0040|consensus
Probab=99.06 E-value=2.4e-09 Score=80.25 Aligned_cols=104 Identities=15% Similarity=0.336 Sum_probs=88.5
Q ss_pred CCcCCCCCccCHHHHHHHHHhcCCCCC-------HHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHH
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTLGHFID-------DVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAF 73 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f 73 (121)
.||++.+|+++..+|..+|+.+|++++ +++++.++..+|++.+|+|+..+|+.+|......+......++.||
T Consensus 2261 hFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~Af 2340 (2399)
T KOG0040|consen 2261 HFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAF 2340 (2399)
T ss_pred HhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHH
Confidence 389999999999999999999998752 2478999999999999999999999999888776556667999999
Q ss_pred HhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 74 RLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 74 ~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
+.+|. +..+|+..++... +|+++.+.++..+
T Consensus 2341 raL~a-~~~yvtke~~~~~-------ltreqaefc~s~m 2371 (2399)
T KOG0040|consen 2341 RALDA-GKPYVTKEELYQN-------LTREQAEFCMSKM 2371 (2399)
T ss_pred HHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHh
Confidence 99999 8889999887554 6677777776654
No 47
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.05 E-value=1.3e-09 Score=58.94 Aligned_cols=57 Identities=7% Similarity=0.042 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhhcc--CCCCCcCHHHHHHHHhh-cCCc----CCHHHHHHHHHhhccCCCCCCC
Q psy15709 65 LEKELKEAFRLYDK--EETHVSSRDVIVVCHFL-RDDD----VQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 65 ~~~~~~~~f~~~D~--~~~g~i~~~el~~~l~~-~~~~----~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
....++.+|..||+ +++|.|+.++|+.+++. +|.. ++.++++.++..+|.+++|.|+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~ 69 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVD 69 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCc
Confidence 34568899999999 89999999999999986 5543 4699999999999999999985
No 48
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.03 E-value=1.6e-09 Score=59.56 Aligned_cols=58 Identities=17% Similarity=0.340 Sum_probs=51.7
Q ss_pred CCcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhcc
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 60 (121)
.||.+++|.|+..++..+++..+ ++.+++..++..++.+++|.|+|++|+.++.....
T Consensus 18 ~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 18 SLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 37999999999999999999865 67889999999999999999999999998876543
No 49
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.02 E-value=1.1e-09 Score=59.19 Aligned_cols=57 Identities=25% Similarity=0.617 Sum_probs=49.2
Q ss_pred CcC--CCCCccCHHHHHHHHHh-cCCC----CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhh
Q psy15709 2 FDS--GKRGTIEKEKVRTILNT-LGHF----IDDVELETVIDEINVESGDKISFEEFLQVACHF 58 (121)
Q Consensus 2 ~D~--~~~g~i~~~el~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 58 (121)
||+ +++|.|+..+|..+++. +|.. ++.+++..++..++.+++|.|+|.+|+.++...
T Consensus 17 ~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 17 YSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 688 79999999999999975 5543 458899999999999999999999999988765
No 50
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.01 E-value=2.2e-09 Score=53.63 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=28.1
Q ss_pred HHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHH
Q psy15709 32 ETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVC 92 (121)
Q Consensus 32 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~ 92 (121)
..+|..++.+++|.|++.+|..++..... ..+...+..+|+.+|.+++|.|+.++|..+
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGE--GLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 34444555555555555555555444332 223344444555555555555555554443
No 51
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.99 E-value=8.3e-10 Score=54.28 Aligned_cols=51 Identities=25% Similarity=0.298 Sum_probs=34.5
Q ss_pred CCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHh
Q psy15709 43 GDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHF 94 (121)
Q Consensus 43 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 94 (121)
+|.|+.++|..++..+... ..+..++..+|..+|.+++|.|+.+||..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~-~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIK-DLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSS-SSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCC-CCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 5677777777777444221 14556677777777777777777777777765
No 52
>KOG0036|consensus
Probab=98.96 E-value=1e-08 Score=68.24 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHH
Q psy15709 28 DVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKE 107 (121)
Q Consensus 28 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~ 107 (121)
+..++.+|+.+|.+++|.++..+..+.+..+..+ .........+|..+|.+.+|.++..||++.+.. .+.++..
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~-~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~ 86 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHP-KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYR 86 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCC-CCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHH
Confidence 3456899999999999999999999998888775 466788899999999999999999999999973 4567888
Q ss_pred HHHhhccCCCCCCC
Q psy15709 108 AFRLYDKEEPMSIV 121 (121)
Q Consensus 108 ~~~~~d~~~dg~i~ 121 (121)
+|...|.++||.|+
T Consensus 87 ~F~~iD~~hdG~i~ 100 (463)
T KOG0036|consen 87 IFQSIDLEHDGKID 100 (463)
T ss_pred HHhhhccccCCccC
Confidence 99999999999985
No 53
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.95 E-value=1.2e-09 Score=46.73 Aligned_cols=28 Identities=29% Similarity=0.214 Sum_probs=20.7
Q ss_pred HHHHHHhhccCCCCCcCHHHHHHHHhhc
Q psy15709 69 LKEAFRLYDKEETHVSSRDVIVVCHFLR 96 (121)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~el~~~l~~~ 96 (121)
++.+|+.+|+|++|+|+.+||+.+++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 5677777777777777777777777653
No 54
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.91 E-value=8.5e-09 Score=55.78 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=48.1
Q ss_pred hHHHHHHHHHh-hccCCCC-CcCHHHHHHHHhhc-----CCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 65 LEKELKEAFRL-YDKEETH-VSSRDVIVVCHFLR-----DDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 65 ~~~~~~~~f~~-~D~~~~g-~i~~~el~~~l~~~-----~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
.-..+..+|+. +|++++| +|+.+||+.++... +...++.+++.+++.+|.|+||.|+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~ 70 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLD 70 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCc
Confidence 34567899999 6787876 99999999999975 3356789999999999999999986
No 55
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.91 E-value=9.4e-09 Score=55.62 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=46.7
Q ss_pred CcCCCCC-ccCHHHHHHHHHhc-----CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhh
Q psy15709 2 FDSGKRG-TIEKEKVRTILNTL-----GHFIDDVELETVIDEINVESGDKISFEEFLQVACHF 58 (121)
Q Consensus 2 ~D~~~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 58 (121)
+|++++| .|+..||..++... +...+..++..++..+|.+++|.|+|++|+.++..+
T Consensus 19 ~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 19 AGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred hccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4667765 99999999999864 234567889999999999999999999999988765
No 56
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.81 E-value=2.2e-08 Score=56.64 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHh
Q psy15709 25 FIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHF 94 (121)
Q Consensus 25 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 94 (121)
......+...|..+|.+++|.|+..|+..+. + ......+...|+.+|.+++|.||.+|+..++.
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l----~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L----DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c----cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3456788999999999999999999999876 2 23456788999999999999999999999994
No 57
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.81 E-value=4.8e-08 Score=55.29 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 64 VLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 64 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
.....+..+|..+|.|++|+|+.+||..+. ++ ..+..+..++..+|.|+||.|+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~--~~e~~~~~f~~~~D~n~Dg~IS 98 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD--PNEHCIKPFFESCDLDKDGSIS 98 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc--chHHHHHHHHHHHCCCCCCCCC
Confidence 344778999999999999999999999987 33 4577788999999999999986
No 58
>PF14658 EF-hand_9: EF-hand domain
Probab=98.80 E-value=1.3e-08 Score=51.38 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=35.2
Q ss_pred HHHhhccCCCCCcCHHHHHHHHhhcCC-cCCHHHHHHHHHhhccCCC-CCCC
Q psy15709 72 AFRLYDKEETHVSSRDVIVVCHFLRDD-DVQEKELKEAFRLYDKEEP-MSIV 121 (121)
Q Consensus 72 ~f~~~D~~~~g~i~~~el~~~l~~~~~-~~~~~e~~~~~~~~d~~~d-g~i~ 121 (121)
+|..||+++.|.|...+++.+|+.++- ..++.+++.+...+|+++. |.|+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~ 54 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVN 54 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEe
Confidence 577777777777777777777777665 5667777777777777766 6553
No 59
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.79 E-value=8.8e-09 Score=44.77 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=25.3
Q ss_pred HHHHHHHhhccCCCCCcCHHHHHHHHh-hcC
Q psy15709 68 ELKEAFRLYDKEETHVSSRDVIVVCHF-LRD 97 (121)
Q Consensus 68 ~~~~~f~~~D~~~~g~i~~~el~~~l~-~~~ 97 (121)
+++.+|+.+|.+++|+|+.+||+.+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367899999999999999999999998 565
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.78 E-value=2.7e-08 Score=53.78 Aligned_cols=54 Identities=19% Similarity=0.482 Sum_probs=46.9
Q ss_pred CCCccCHHHHHHHHH-hcCCCCC----HHHHHHHHHHhccCCCCceeHHHHHHHHHhhc
Q psy15709 6 KRGTIEKEKVRTILN-TLGHFID----DVELETVIDEINVESGDKISFEEFLQVACHFL 59 (121)
Q Consensus 6 ~~g~i~~~el~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 59 (121)
.+|.|+..||+.++. .++..++ .+++..++..+|.+++|.|+|++|+.++..+.
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 478999999999996 5665566 89999999999999999999999999887653
No 61
>KOG0030|consensus
Probab=98.74 E-value=2.7e-08 Score=57.08 Aligned_cols=55 Identities=29% Similarity=0.498 Sum_probs=48.3
Q ss_pred CCcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHH
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVAC 56 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 56 (121)
+||++++|+|...+|+.+|..+|-.++++++..++... .+++|.|.|+.|+..+.
T Consensus 96 vFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 96 VFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred hhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 48999999999999999999999999999999888776 45678999999998753
No 62
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.72 E-value=6e-08 Score=52.41 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhccC--CCCCcCHHHHHHHHh-hcCCcCC----HHHHHHHHHhhccCCCCCCC
Q psy15709 66 EKELKEAFRLYDKE--ETHVSSRDVIVVCHF-LRDDDVQ----EKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 66 ~~~~~~~f~~~D~~--~~g~i~~~el~~~l~-~~~~~~~----~~e~~~~~~~~d~~~dg~i~ 121 (121)
-..+...|+.|+.. .+|.|+.+||+.++. .++..++ +++++.+++.+|.+++|.|+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~ 69 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLS 69 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCc
Confidence 35677889999865 478999999999997 5666676 99999999999999999985
No 63
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.69 E-value=4.9e-08 Score=41.64 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=25.4
Q ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHh
Q psy15709 30 ELETVIDEINVESGDKISFEEFLQVACH 57 (121)
Q Consensus 30 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 57 (121)
+++.+|..+|++++|.|+++||+.++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5788999999999999999999998864
No 64
>KOG2562|consensus
Probab=98.65 E-value=1.9e-07 Score=63.14 Aligned_cols=114 Identities=14% Similarity=0.230 Sum_probs=83.0
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhc----cCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhc
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEIN----VESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYD 77 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d----~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D 77 (121)
+|+|.+|.|+.++|...-. ...+.--+.++|..+. ...+|+++|++|+-++..... ......++..|+.+|
T Consensus 287 LD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~--k~t~~SleYwFrclD 361 (493)
T KOG2562|consen 287 LDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED--KDTPASLEYWFRCLD 361 (493)
T ss_pred hccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc--CCCccchhhheeeee
Confidence 6899999999999977643 3345666788998332 346789999999999887766 456678999999999
Q ss_pred cCCCCCcCHHHHHHHHhhc-------CC-cCC-HHHHHHHHHhhccCCCCCC
Q psy15709 78 KEETHVSSRDVIVVCHFLR-------DD-DVQ-EKELKEAFRLYDKEEPMSI 120 (121)
Q Consensus 78 ~~~~g~i~~~el~~~l~~~-------~~-~~~-~~e~~~~~~~~d~~~dg~i 120 (121)
.+++|.|+..|++-+.+.. +. .++ +.-+.+++...-+...++|
T Consensus 362 ld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kI 413 (493)
T KOG2562|consen 362 LDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKI 413 (493)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCce
Confidence 9999999999998887753 21 222 2233445555555555544
No 65
>KOG0031|consensus
Probab=98.63 E-value=1.5e-07 Score=55.01 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 66 EKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 66 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
-.++++||..+|.+++|.|..++|+.++.++|...+++++++|++++
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea 77 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA 77 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 35678888888888888888888888888888778888887766554
No 66
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.60 E-value=3.8e-07 Score=43.63 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=38.9
Q ss_pred cCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhh
Q psy15709 10 IEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHF 58 (121)
Q Consensus 10 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 58 (121)
++..|+..+|+.+++.+++.-+..+|+..|++++|.+..+||..++..+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 6788999999999999999999999999999999999999999887653
No 67
>KOG0041|consensus
Probab=98.57 E-value=6.5e-07 Score=54.59 Aligned_cols=91 Identities=22% Similarity=0.326 Sum_probs=62.9
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHh--hccC
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRL--YDKE 79 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~--~D~~ 79 (121)
||.+.+|+|+..||..++..+|.+-+.-.+..++..+|.+.+|+|+|.+|+-++.......-.....+..+=+. .|..
T Consensus 108 yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~LAr~~eVDVs 187 (244)
T KOG0041|consen 108 YDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRLARLSEVDVS 187 (244)
T ss_pred hcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHHHHhcccchh
Confidence 67888888888888888888888877777788888888888888888888887766554221222223333222 5777
Q ss_pred CCCCcCHHHHHHH
Q psy15709 80 ETHVSSRDVIVVC 92 (121)
Q Consensus 80 ~~g~i~~~el~~~ 92 (121)
.-|......|-.+
T Consensus 188 keGV~GAknFFeA 200 (244)
T KOG0041|consen 188 KEGVSGAKNFFEA 200 (244)
T ss_pred hhhhhhHHHHHHH
Confidence 7777666666443
No 68
>KOG0041|consensus
Probab=98.56 E-value=3.1e-07 Score=55.97 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=45.2
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
.....+|+.||.+.+|+|+..||+.+|..+|.+-|---+..+|+..|-|.||+|+
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklS 153 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLS 153 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchh
Confidence 4567788888888888888888888888888777777778888888888888874
No 69
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.46 E-value=2e-07 Score=38.32 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=17.7
Q ss_pred HHHHHHhhccCCCCCcCHHHHHHH
Q psy15709 69 LKEAFRLYDKEETHVSSRDVIVVC 92 (121)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~el~~~ 92 (121)
++.+|+.+|.|++|.|+.+||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 356777778888888888777765
No 70
>KOG0038|consensus
Probab=98.44 E-value=1.8e-06 Score=50.15 Aligned_cols=94 Identities=11% Similarity=0.125 Sum_probs=75.1
Q ss_pred CcCCCCCccCHHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchh---hHHHHHHHHHhhc
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLG-HFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDV---LEKELKEAFRLYD 77 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~---~~~~~~~~f~~~D 77 (121)
|-.||.|.++..+|..++..+. .-|..-.+...|+.||-++++.|.-+++.+.+..+.+..-+ .......+.+..|
T Consensus 80 FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD 159 (189)
T KOG0038|consen 80 FSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEAD 159 (189)
T ss_pred hccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhc
Confidence 5678999999999999988654 34555566778889999999999999999999988774322 2233456777889
Q ss_pred cCCCCCcCHHHHHHHHhh
Q psy15709 78 KEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 78 ~~~~g~i~~~el~~~l~~ 95 (121)
.+|+|.++..+|.+++..
T Consensus 160 ~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 160 LDGDGKLSFAEFEHVILR 177 (189)
T ss_pred CCCCCcccHHHHHHHHHh
Confidence 999999999999998765
No 71
>KOG2643|consensus
Probab=98.39 E-value=2.5e-06 Score=57.59 Aligned_cols=116 Identities=11% Similarity=0.190 Sum_probs=67.8
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhh-HHHHHHHHHhhccCC
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVL-EKELKEAFRLYDKEE 80 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~-~~~~~~~f~~~D~~~ 80 (121)
|-++++++++.++|..+++.+ ..+.+..=|..+++...|.|+-.+|..++......+... ...++.+-+.+..++
T Consensus 295 FG~rg~~kLs~deF~~F~e~L----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~ 370 (489)
T KOG2643|consen 295 FGKRGNGKLSIDEFLKFQENL----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDG 370 (489)
T ss_pred hccCCCccccHHHHHHHHHHH----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCC
Confidence 556778888888888877754 234445556666666567777777777666554321111 112333333333332
Q ss_pred -------------------------------CCCcCHHHHHHHHhh-cCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 81 -------------------------------THVSSRDVIVVCHFL-RDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 81 -------------------------------~g~i~~~el~~~l~~-~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
.+.|+..+|+++... .|.++++.-++-+|.-+|.|+||.++
T Consensus 371 ~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS 443 (489)
T KOG2643|consen 371 KGISLQEFKAFFRFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLS 443 (489)
T ss_pred CCcCHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCccc
Confidence 334555555544443 35666666666677788999999874
No 72
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.36 E-value=3.5e-06 Score=57.04 Aligned_cols=58 Identities=12% Similarity=0.057 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 23 GHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 23 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
|.......+..+|..+|.+++|.|+++||.. ...+|+.+|.|++|.|+.+||++++..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG---------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4555666777788888888888888888742 356788888888888888888777753
No 73
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.35 E-value=4.5e-06 Score=45.06 Aligned_cols=53 Identities=8% Similarity=0.402 Sum_probs=40.7
Q ss_pred CCCccCHHHHHHHHHh-c----CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhh
Q psy15709 6 KRGTIEKEKVRTILNT-L----GHFIDDVELETVIDEINVESGDKISFEEFLQVACHF 58 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 58 (121)
..++++..||..++.+ + .-.-.+..+..++...|.+++|.|+|.||+.++..+
T Consensus 20 ~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 20 EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3568899999888853 2 223356778889999999999999999999888765
No 74
>KOG4251|consensus
Probab=98.33 E-value=3.3e-06 Score=53.27 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=38.9
Q ss_pred cCCCCCccCHHHHHHHHHhc-C--CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhh
Q psy15709 3 DSGKRGTIEKEKVRTILNTL-G--HFIDDVELETVIDEINVESGDKISFEEFLQVACHF 58 (121)
Q Consensus 3 D~~~~g~i~~~el~~~l~~~-~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 58 (121)
|.+.+|.|+..|+...+..- . +.-..++-...|+.+|++++|+|+|++|...+...
T Consensus 111 DVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 111 DVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred ccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 66778899999998776531 1 11223344557778899999999999997765544
No 75
>KOG2643|consensus
Probab=98.33 E-value=7.8e-06 Score=55.28 Aligned_cols=89 Identities=24% Similarity=0.303 Sum_probs=66.6
Q ss_pred CCcCCCCCccCHHHHHHHHHh------cCC--------CCC-HHHH--HHHHHHhccCCCCceeHHHHHHHHHhhccCch
Q psy15709 1 MFDSGKRGTIEKEKVRTILNT------LGH--------FID-DVEL--ETVIDEINVESGDKISFEEFLQVACHFLRDDD 63 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~------~~~--------~~~-~~~~--~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 63 (121)
+||.|++|.|+.+||..+.+- +|. ..+ ..++ .....-+.+++++++++++|.+++..+..
T Consensus 241 MFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq~--- 317 (489)
T KOG2643|consen 241 MFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENLQE--- 317 (489)
T ss_pred eeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHHHHH---
Confidence 589999999999999777642 222 000 1122 12444557889999999999999986633
Q ss_pred hhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 64 VLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 64 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
+-++.-|..+|+..+|.|+..+|..++-.
T Consensus 318 ---Eil~lEF~~~~~~~~g~Ise~DFA~~lL~ 346 (489)
T KOG2643|consen 318 ---EILELEFERFDKGDSGAISEVDFAELLLA 346 (489)
T ss_pred ---HHHHHHHHHhCcccccccCHHHHHHHHHH
Confidence 55778899999999999999999888754
No 76
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.25 E-value=1.1e-05 Score=43.56 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=42.9
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhh-c----CCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFL-R----DDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~-~----~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
..+-..|+.|. .+.+.++..||+.++.. + ...-.+..++.+++.+|.|+||.||
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vd 66 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVG 66 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCc
Confidence 45677899997 34568999999999974 3 2334678899999999999999986
No 77
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.23 E-value=6.5e-06 Score=39.40 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=36.5
Q ss_pred ceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhc
Q psy15709 45 KISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLR 96 (121)
Q Consensus 45 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 96 (121)
+++|.|...++..+.- ......+..+|+.+|++++|.+..+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI--~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNI--EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc--CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 3677888887776655 3556778889999999999999999999988753
No 78
>KOG0751|consensus
Probab=98.12 E-value=5e-05 Score=52.43 Aligned_cols=44 Identities=16% Similarity=0.011 Sum_probs=28.1
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
+..+.+|+..|+.++|+|+.-+++.++-..-.++....+++.+-
T Consensus 179 E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv 222 (694)
T KOG0751|consen 179 EHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLV 222 (694)
T ss_pred HHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhh
Confidence 33566777777777777777777777766555555555555443
No 79
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.10 E-value=4.5e-05 Score=51.81 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 63 DVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 63 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
......++.+|+.+|.+++|.|+.+||.. ++.+|..+|.|+||.|+
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is 375 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKIT 375 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCc
Confidence 34557788999999999999999999842 57799999999999985
No 80
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.07 E-value=1.1e-05 Score=33.08 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=21.6
Q ss_pred HHHHHHHhccCCCCceeHHHHHHHH
Q psy15709 31 LETVIDEINVESGDKISFEEFLQVA 55 (121)
Q Consensus 31 ~~~~~~~~d~~~~g~i~~~ef~~~~ 55 (121)
++.+|..+|.+++|.|+++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578999999999999999998853
No 81
>KOG4666|consensus
Probab=97.94 E-value=1.5e-05 Score=52.17 Aligned_cols=89 Identities=11% Similarity=0.134 Sum_probs=59.7
Q ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh-cCCcCCHHHHHH
Q psy15709 29 VELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL-RDDDVQEKELKE 107 (121)
Q Consensus 29 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~-~~~~~~~~e~~~ 107 (121)
..+..+|..||.+++|.++|.+.+..+.-++.+ .....-++.+|+.|+.+.+|.++..+|--+|+. +| +..-.+-.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p-~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~ 335 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGP-PVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPV 335 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCC-CCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccc
Confidence 445778888888888888888888877777665 356677888888888888888888887777763 44 22222233
Q ss_pred HHHhhccCCCCCC
Q psy15709 108 AFRLYDKEEPMSI 120 (121)
Q Consensus 108 ~~~~~d~~~dg~i 120 (121)
+|...+...+|+|
T Consensus 336 lf~~i~q~d~~ki 348 (412)
T KOG4666|consen 336 LFPSIEQKDDPKI 348 (412)
T ss_pred cchhhhcccCcce
Confidence 4444444444443
No 82
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.93 E-value=3.1e-05 Score=33.37 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.2
Q ss_pred HHHHHHHHhccCCCCceeHHHHHHHHH
Q psy15709 30 ELETVIDEINVESGDKISFEEFLQVAC 56 (121)
Q Consensus 30 ~~~~~~~~~d~~~~g~i~~~ef~~~~~ 56 (121)
+++.+|..+|.+++|.|+++||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367899999999999999999999886
No 83
>KOG0040|consensus
Probab=97.90 E-value=0.00012 Score=56.44 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=71.8
Q ss_pred CCHH---HHHHHHHHhccCCCCceeHHHHHHHHHhhccCc-----hhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcC
Q psy15709 26 IDDV---ELETVIDEINVESGDKISFEEFLQVACHFLRDD-----DVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRD 97 (121)
Q Consensus 26 ~~~~---~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-----~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 97 (121)
.+++ ++..+|+.||++.+|.+++.+|..++......- +.+.-.++......|++.+|+|+..+...+|-.-.
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 5554 446789999999999999999999998775532 23445899999999999999999999999887543
Q ss_pred --CcCCHHHHHHHHHhhcc
Q psy15709 98 --DDVQEKELKEAFRLYDK 114 (121)
Q Consensus 98 --~~~~~~e~~~~~~~~d~ 114 (121)
.-.+.++++..|+.++.
T Consensus 2327 TeNI~s~~eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2327 TENILSSEEIEDAFRALDA 2345 (2399)
T ss_pred cccccchHHHHHHHHHhhc
Confidence 23577899999999886
No 84
>KOG0377|consensus
Probab=97.84 E-value=0.00011 Score=50.20 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=68.1
Q ss_pred CCCCccCHHHHHHHHHhcC------C------CCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccC--chhhHHHHH
Q psy15709 5 GKRGTIEKEKVRTILNTLG------H------FIDDVELETVIDEINVESGDKISFEEFLQVACHFLRD--DDVLEKELK 70 (121)
Q Consensus 5 ~~~g~i~~~el~~~l~~~~------~------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~ 70 (121)
+.+|.|.+......++.-+ . .-....++.+|..+|.++.|.|+.+||...+..+... ..-....+.
T Consensus 511 s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~ 590 (631)
T KOG0377|consen 511 SDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEIL 590 (631)
T ss_pred CcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHH
Confidence 4566776665555444211 1 1123456789999999999999999999988777552 123457788
Q ss_pred HHHHhhccCCCCCcCHHHHHHHHhhcC
Q psy15709 71 EAFRLYDKEETHVSSRDVIVVCHFLRD 97 (121)
Q Consensus 71 ~~f~~~D~~~~g~i~~~el~~~l~~~~ 97 (121)
..-+.+|-+++|.|+..||..+++-..
T Consensus 591 ~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 591 ELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred HHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 889999999999999999999988543
No 85
>KOG0169|consensus
Probab=97.84 E-value=0.00026 Score=51.05 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=92.2
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCC
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEET 81 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 81 (121)
.|++.+|.++..+...++..++..+....+..++...+..+++++...+|..+....... . ++...|..+-.+ .
T Consensus 145 ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r----p-ev~~~f~~~s~~-~ 218 (746)
T KOG0169|consen 145 ADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR----P-EVYFLFVQYSHG-K 218 (746)
T ss_pred HccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC----c-hHHHHHHHHhCC-C
Confidence 488999999999999999999999999999999999988899999999999987766542 2 788888888655 8
Q ss_pred CCcCHHHHHHHHhhcC--CcCCHHHHHHHHHhhccC
Q psy15709 82 HVSSRDVIVVCHFLRD--DDVQEKELKEAFRLYDKE 115 (121)
Q Consensus 82 g~i~~~el~~~l~~~~--~~~~~~e~~~~~~~~d~~ 115 (121)
++++.++|..+|...+ ...+.+.++++++.+...
T Consensus 219 ~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~ 254 (746)
T KOG0169|consen 219 EYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPS 254 (746)
T ss_pred CccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhh
Confidence 8999999999999763 357888999999887543
No 86
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.77 E-value=4.3e-05 Score=31.47 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=18.9
Q ss_pred HHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 69 LKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
++.+|+.+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456777777777777777777777654
No 87
>KOG4666|consensus
Probab=97.74 E-value=0.00013 Score=47.92 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=77.3
Q ss_pred CCcCCCCCccCHHHHHHHHHhc-CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccC
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTL-GHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKE 79 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 79 (121)
|||.+++|.+++.+-...+.-+ |...+...++.-|+.|+...+|.++-.+|..++..... ...-.+...|+.++..
T Consensus 267 LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg---v~~l~v~~lf~~i~q~ 343 (412)
T KOG4666|consen 267 LFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG---VEVLRVPVLFPSIEQK 343 (412)
T ss_pred eecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC---cceeeccccchhhhcc
Confidence 6899999999999998888765 45566777899999999999999999888887765543 2334566889999999
Q ss_pred CCCCcCHHHHHHHHhhcC
Q psy15709 80 ETHVSSRDVIVVCHFLRD 97 (121)
Q Consensus 80 ~~g~i~~~el~~~l~~~~ 97 (121)
.+|.|+.++|+++....+
T Consensus 344 d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 344 DDPKIYASNFRKFAATEP 361 (412)
T ss_pred cCcceeHHHHHHHHHhCc
Confidence 999999999999986543
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.69 E-value=0.00015 Score=41.01 Aligned_cols=56 Identities=16% Similarity=0.070 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 64 VLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 64 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
.....+.-.|..+|.+++|.|+..|++.+...+. ..+.=+..+++..|.|+||.|+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~--~~e~C~~~F~~~CD~n~d~~Is 106 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM--PPEHCARPFFRSCDVNKDGKIS 106 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS--TTGGGHHHHHHHH-TT-SSSEE
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh--hhHHHHHHHHHHcCCCCCCCCC
Confidence 3446677788888888888888888887766541 2333456788888888888874
No 89
>KOG0751|consensus
Probab=97.65 E-value=0.00078 Score=46.83 Aligned_cols=90 Identities=13% Similarity=0.124 Sum_probs=65.6
Q ss_pred cCCCCCccCHHHHHHHH-HhcCCC-CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCC
Q psy15709 3 DSGKRGTIEKEKVRTIL-NTLGHF-IDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEE 80 (121)
Q Consensus 3 D~~~~g~i~~~el~~~l-~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 80 (121)
+.++.-..+.++|.... .-++.. +.++.++.+-...|...+|-|+|.||+.+=..++.+ ......+|+.||+.+
T Consensus 46 e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p----Dal~~~aFqlFDr~~ 121 (694)
T KOG0751|consen 46 EKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP----DALFEVAFQLFDRLG 121 (694)
T ss_pred hhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc----hHHHHHHHHHhcccC
Confidence 34555667778776543 333433 444445555556677788999999999987666553 366788999999999
Q ss_pred CCCcCHHHHHHHHhhc
Q psy15709 81 THVSSRDVIVVCHFLR 96 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~ 96 (121)
+|.++.+++..++.+.
T Consensus 122 ~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 122 NGEVSFEDVADIFGQT 137 (694)
T ss_pred CCceehHHHHHHHhcc
Confidence 9999999999999764
No 90
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.59 E-value=0.00056 Score=38.06 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=42.4
Q ss_pred HHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHh
Q psy15709 32 ETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHF 94 (121)
Q Consensus 32 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 94 (121)
..+|...+. .+|.|+-.+-..++... .-+...+..++...|.+++|+++.+||.-++.
T Consensus 13 ~~~F~~l~~-~~g~isg~~a~~~f~~S----~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 13 DQIFQSLDP-QDGKISGDQAREFFMKS----GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHCTSS-STTEEEHHHHHHHHHHT----TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHhcCC-CCCeEeHHHHHHHHHHc----CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 456666654 56888888888877655 34457888888888888888888888877765
No 91
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.55 E-value=6.2e-05 Score=42.53 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHH
Q psy15709 27 DDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVV 91 (121)
Q Consensus 27 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~ 91 (121)
-...+.-.|..+|.+++|.++..|+..+...+.+ .+..++..|+.+|.+++|.|+..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~----~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMP----PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTST----TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhh----hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4566788999999999999999999888765533 335678899999999999999999764
No 92
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.54 E-value=0.00041 Score=36.91 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=51.6
Q ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccC----CCCCcCHHHHHHHHhhc
Q psy15709 30 ELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKE----ETHVSSRDVIVVCHFLR 96 (121)
Q Consensus 30 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~----~~g~i~~~el~~~l~~~ 96 (121)
+|..+|..+.. +.+.++.++|..++...-+........++.++..|.++ ..+.++.+.|..+|.+-
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 46788888855 67899999999999877775445678888888888654 47899999999999753
No 93
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.52 E-value=0.00037 Score=38.77 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 65 LEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 65 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
.......+|...+. ++|.|+.++.+.++...+ ++.+.+..|-..+|.+++|.++
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~ 61 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLD 61 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEE
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCC
Confidence 34667889999985 689999999999999887 9999999999999999999864
No 94
>KOG2562|consensus
Probab=97.45 E-value=0.0016 Score=44.86 Aligned_cols=115 Identities=14% Similarity=0.184 Sum_probs=80.6
Q ss_pred CcCCCCCccCHHHHHH--HHHhcC------------CCCCHHHHHHH---HHHhccCCCCceeHHHHHHHHHhhccCchh
Q psy15709 2 FDSGKRGTIEKEKVRT--ILNTLG------------HFIDDVELETV---IDEINVESGDKISFEEFLQVACHFLRDDDV 64 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~--~l~~~~------------~~~~~~~~~~~---~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 64 (121)
.++.++|.|+..++.. ++..+. -..+-+....+ |..+|++.+|.|+-++...+.... .
T Consensus 234 ~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t-----l 308 (493)
T KOG2562|consen 234 LNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT-----L 308 (493)
T ss_pred eCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccc-----h
Confidence 4677889999888844 232221 11222222233 555677777777777776654332 2
Q ss_pred hHHHHHHHHH----hhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 65 LEKELKEAFR----LYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 65 ~~~~~~~~f~----~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
+..-+..+|. .+-...+|.++.++|..++-.+..+-++.-++.+|+-+|.+++|.++
T Consensus 309 t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt 369 (493)
T KOG2562|consen 309 TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILT 369 (493)
T ss_pred hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCccc
Confidence 3455678888 34455688999999999999998889999999999999999999875
No 95
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.31 E-value=0.00048 Score=28.07 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=22.8
Q ss_pred HHHHHHHhccCCCCceeHHHHHHHHHh
Q psy15709 31 LETVIDEINVESGDKISFEEFLQVACH 57 (121)
Q Consensus 31 ~~~~~~~~d~~~~g~i~~~ef~~~~~~ 57 (121)
+..+|..++.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567888999999999999999988753
No 96
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.29 E-value=0.00069 Score=40.78 Aligned_cols=95 Identities=17% Similarity=0.065 Sum_probs=63.4
Q ss_pred CCcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhcc---CCCCceeHHHHHHHHHhhcc------------Cchhh
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINV---ESGDKISFEEFLQVACHFLR------------DDDVL 65 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~---~~~g~i~~~ef~~~~~~~~~------------~~~~~ 65 (121)
.||+|++|.|.+.|--..++.+|+.+--..+..++-.... ...+.+.-.-|--.+..+-+ +..-.
T Consensus 15 FFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~eGrFv 94 (174)
T PF05042_consen 15 FFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTEGRFV 94 (174)
T ss_pred eeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccCCcCC
Confidence 4899999999999999999999998766555444333221 12222221112111111111 11234
Q ss_pred HHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 66 EKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 66 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
.+.++++|..++..+.+.+|..|+.++++.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 578999999999988999999999999986
No 97
>KOG1029|consensus
Probab=97.20 E-value=0.005 Score=45.17 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=87.9
Q ss_pred CCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCc-----------------------
Q psy15709 6 KRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDD----------------------- 62 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~----------------------- 62 (121)
+.|.|+..+-+.++-+-| +....+.+++...|.+.+|+++..+|.-.|..+...-
T Consensus 28 ~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP~~LPPsll~~~~~~~p~ 105 (1118)
T KOG1029|consen 28 GQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLPPVLPPSLLKQPPRNAPS 105 (1118)
T ss_pred CCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCCCCCChHHhccCCcCCCC
Confidence 467888888888776544 4456788899999999999999999977665442200
Q ss_pred --------------------------------------------------------------------------------
Q psy15709 63 -------------------------------------------------------------------------------- 62 (121)
Q Consensus 63 -------------------------------------------------------------------------------- 62 (121)
T Consensus 106 ~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ss~se~~~~~~s~~q~~ 185 (1118)
T KOG1029|consen 106 TWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHDSSVSEGRPSIESVNQLE 185 (1118)
T ss_pred CCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCcchhhcCccchhhhhhh
Confidence
Q ss_pred -----hhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 63 -----DVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 63 -----~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
.....+.+..|..+|+..+|+++...=+.+|-.-+ ++...+..|-...|.|+||+++
T Consensus 186 eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~ 247 (1118)
T KOG1029|consen 186 EWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLS 247 (1118)
T ss_pred hccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCccc
Confidence 11223456789999999999999999999987666 8888999999999999999875
No 98
>KOG4251|consensus
Probab=97.16 E-value=0.0016 Score=41.42 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=52.1
Q ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhhccC-chhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 29 VELETVIDEINVESGDKISFEEFLQVACHFLRD-DDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 29 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
..+..+|...|.+.+++|+-.+..+.+.....+ -....++-+..|+..|++++|.|+.+|++--+..
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 456778999999999999999999987655442 1233455667799999999999999999765543
No 99
>KOG4065|consensus
Probab=97.08 E-value=0.0046 Score=34.83 Aligned_cols=54 Identities=26% Similarity=0.481 Sum_probs=39.6
Q ss_pred CCcCCCCCccCHHHHHHHHHhc------CC----CCCHHHHHHHHHHh----ccCCCCceeHHHHHHH
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTL------GH----FIDDVELETVIDEI----NVESGDKISFEEFLQV 54 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~------~~----~~~~~~~~~~~~~~----d~~~~g~i~~~ef~~~ 54 (121)
+.|.|+++.|+--|+.+++... |. -+++.++..+++.+ |.+++|.|+|.+|+..
T Consensus 75 MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 75 MHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3588899999999998888643 32 24566666655544 6789999999999864
No 100
>KOG0046|consensus
Probab=96.90 E-value=0.0033 Score=44.05 Aligned_cols=58 Identities=16% Similarity=0.361 Sum_probs=49.1
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCC---CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhcc
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHF---IDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 60 (121)
.| +++|+|+..++..++...+.. ...++++.++...+.+.+|.|+|++|+..+..+..
T Consensus 28 ~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 28 LD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred hc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 35 889999999999999987654 34788999999999999999999999997665544
No 101
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.85 E-value=0.0034 Score=33.32 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=38.6
Q ss_pred HHHHHHHhhccCCCCCcCHHHHHHHHhh-cCC-cCCHHHHHHHHHhhccC
Q psy15709 68 ELKEAFRLYDKEETHVSSRDVIVVCHFL-RDD-DVQEKELKEAFRLYDKE 115 (121)
Q Consensus 68 ~~~~~f~~~D~~~~g~i~~~el~~~l~~-~~~-~~~~~e~~~~~~~~d~~ 115 (121)
++..+|+.|.. +.+.++.++|+.+|+. .+. .++.+++..++..+.++
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~ 49 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPD 49 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccc
Confidence 46789999955 7889999999999985 454 57999999999987644
No 102
>KOG4347|consensus
Probab=96.67 E-value=0.0063 Score=43.63 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=57.7
Q ss_pred cCHHHHHHHHHhcCCC-CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHH
Q psy15709 10 IEKEKVRTILNTLGHF-IDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDV 88 (121)
Q Consensus 10 i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e 88 (121)
+++..+..+++.+-.. .+..-++.+|...|.+.+|.++|.+++..+..+.. ....+.++..|+.+|++++ ....++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--GDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--hhHHHHHHHHHhhccCCcc-cccccc
Confidence 3444555555543221 23344578999999999999999999999988877 5677889999999999988 888877
Q ss_pred H
Q psy15709 89 I 89 (121)
Q Consensus 89 l 89 (121)
.
T Consensus 612 ~ 612 (671)
T KOG4347|consen 612 V 612 (671)
T ss_pred c
Confidence 6
No 103
>KOG0046|consensus
Probab=96.50 E-value=0.013 Score=41.31 Aligned_cols=72 Identities=10% Similarity=0.031 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHh---ccCCCCceeHHHHHHHHHhhccCc-hhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcC
Q psy15709 25 FIDDVELETVIDEI---NVESGDKISFEEFLQVACHFLRDD-DVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRD 97 (121)
Q Consensus 25 ~~~~~~~~~~~~~~---d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 97 (121)
.++.+++..+-..| + ++.|.|+..+....+....... ....+.++.+....+.+.+|.|+.++|..++..+.
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 35566655444433 4 6778888888887776665531 22356677777777788888888888777665443
No 104
>KOG0035|consensus
Probab=96.47 E-value=0.017 Score=43.16 Aligned_cols=88 Identities=18% Similarity=0.109 Sum_probs=66.8
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCH-----HHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhh
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDD-----VELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLY 76 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~ 76 (121)
+++...|.++++++..+|..+|.+... .++..++...+....|.++|.+|...+..-... ......+..+|+.+
T Consensus 756 ~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~-l~~~~r~i~s~~d~ 834 (890)
T KOG0035|consen 756 QDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED-LDTELRAILAFEDW 834 (890)
T ss_pred HHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh-hcHHHHHHHHHHHH
Confidence 456677899999999999999988664 233444445555566899999999999877664 35667778888888
Q ss_pred ccCCCCCcCHHHHHH
Q psy15709 77 DKEETHVSSRDVIVV 91 (121)
Q Consensus 77 D~~~~g~i~~~el~~ 91 (121)
-++.. +|..+||..
T Consensus 835 ~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 835 AKTKA-YLLLEELVR 848 (890)
T ss_pred Hcchh-HHHHHHHHh
Confidence 66655 799998887
No 105
>KOG4065|consensus
Probab=96.43 E-value=0.01 Score=33.47 Aligned_cols=52 Identities=13% Similarity=-0.021 Sum_probs=39.7
Q ss_pred HHHHHhhccCCCCCcCHHHHHHHHhhc------C----CcCCHHHHHHHHH----hhccCCCCCCC
Q psy15709 70 KEAFRLYDKEETHVSSRDVIVVCHFLR------D----DDVQEKELKEAFR----LYDKEEPMSIV 121 (121)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~el~~~l~~~------~----~~~~~~e~~~~~~----~~d~~~dg~i~ 121 (121)
-.-|...|.++++.|+--|+.+++... | +-.++.|++.++. .-|.|+||.|+
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~ID 135 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVID 135 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceee
Confidence 356888899999999999998888643 2 1247778776665 45899999985
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=96.39 E-value=0.034 Score=40.16 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=33.5
Q ss_pred CceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhc-CC-cCCHHHHHHHHH
Q psy15709 44 DKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLR-DD-DVQEKELKEAFR 110 (121)
Q Consensus 44 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~-~~~~~e~~~~~~ 110 (121)
|.++|.+|..+...+......+..++..+|..+-. +.+.++.++|..+|... +. ..+.+++..++.
T Consensus 15 g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~ 82 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVE 82 (599)
T ss_pred CCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHH
Confidence 56666666555554432112234556666666643 22456666666666643 22 244455544443
No 107
>PLN02952 phosphoinositide phospholipase C
Probab=96.38 E-value=0.081 Score=38.32 Aligned_cols=89 Identities=9% Similarity=0.051 Sum_probs=63.4
Q ss_pred CCCccCHHHHHHHHHhcCC--CCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhh----c--
Q psy15709 6 KRGTIEKEKVRTILNTLGH--FIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLY----D-- 77 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~----D-- 77 (121)
+.|.+++++|..+.+.+.. .....++..+|..+..+ .+.++.++|..++................++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999988887643 34678999999999654 4689999999999887764333334444444432 1
Q ss_pred -cCCCCCcCHHHHHHHHhh
Q psy15709 78 -KEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 78 -~~~~g~i~~~el~~~l~~ 95 (121)
..+.+.++.+.|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 113346899999999863
No 108
>KOG1707|consensus
Probab=95.90 E-value=0.14 Score=36.85 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=66.5
Q ss_pred CcCCCCCccCHHHHHHHH-HhcCCCCCHHHHHHHHHHhccC-----CCCceeHHHHHHHHHhhccCc-------------
Q psy15709 2 FDSGKRGTIEKEKVRTIL-NTLGHFIDDVELETVIDEINVE-----SGDKISFEEFLQVACHFLRDD------------- 62 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l-~~~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~~~------------- 62 (121)
-|.|++|.++-.|+..+= ..++.++...++..+-...... ....++..-|+-+...+....
T Consensus 204 ~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW~iLR~fg 283 (625)
T KOG1707|consen 204 SDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHETTWTILRKFG 283 (625)
T ss_pred hccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccchhhhhhhcC
Confidence 478999999999997763 3466777776665555444322 234566666766544432210
Q ss_pred ---------------------------hhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcC
Q psy15709 63 ---------------------------DVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRD 97 (121)
Q Consensus 63 ---------------------------~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 97 (121)
.....-+..+|..||.+++|.++..|+...++...
T Consensus 284 Y~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 284 YTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred CcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 23446678899999999999999999999998753
No 109
>KOG4347|consensus
Probab=95.71 E-value=0.03 Score=40.35 Aligned_cols=71 Identities=24% Similarity=0.223 Sum_probs=51.3
Q ss_pred eeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCC
Q psy15709 46 ISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEP 117 (121)
Q Consensus 46 i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~d 117 (121)
|+|+.|...+.....- .....-+..+|+.+|.+++|.|+..++...|..+...-.-+-+.-+++.+|++++
T Consensus 535 i~~~~f~~~f~~l~pw-~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~ 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPW-AVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD 605 (671)
T ss_pred HHHhhHHHHhhccCch-hHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc
Confidence 3344444444433332 2445667899999999999999999999999887655556677778888888876
No 110
>KOG0169|consensus
Probab=95.54 E-value=0.23 Score=36.74 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHH
Q psy15709 26 IDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKEL 105 (121)
Q Consensus 26 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~ 105 (121)
....++..+|...|++.+|.+++.+-..++..+.. .-....++..|+..+..+++.+...+++.+...+..+. ++
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~--~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev 207 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNV--QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EV 207 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHH--hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hH
Confidence 34567889999999999999999999988877755 44557788889999999999999999988887765322 55
Q ss_pred HHHHHhh
Q psy15709 106 KEAFRLY 112 (121)
Q Consensus 106 ~~~~~~~ 112 (121)
..+|..+
T Consensus 208 ~~~f~~~ 214 (746)
T KOG0169|consen 208 YFLFVQY 214 (746)
T ss_pred HHHHHHH
Confidence 5555444
No 111
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.47 E-value=0.16 Score=30.40 Aligned_cols=56 Identities=13% Similarity=0.372 Sum_probs=43.3
Q ss_pred CCCCccCHHHHHHHHHhcCC---CCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhcc
Q psy15709 5 GKRGTIEKEKVRTILNTLGH---FIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60 (121)
Q Consensus 5 ~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 60 (121)
.+...++...|.++++..++ .++...+..+|..+-..+...|+|++|...|..+..
T Consensus 14 ~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~ 72 (154)
T PF05517_consen 14 KNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAE 72 (154)
T ss_dssp STSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHH
Confidence 34566888999999998764 478899999999986666678999999999876654
No 112
>KOG1265|consensus
Probab=95.36 E-value=0.87 Score=34.75 Aligned_cols=106 Identities=11% Similarity=0.216 Sum_probs=74.2
Q ss_pred CCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccC--C-----CCceeHHHHHHHHHhhccCchhhHHHHHHHHHhh
Q psy15709 4 SGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVE--S-----GDKISFEEFLQVACHFLRDDDVLEKELKEAFRLY 76 (121)
Q Consensus 4 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~--~-----~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~ 76 (121)
.+..|+|....+.+++.+ .-.+..++........- . ....+++.|..++..++.. .++..+|..+
T Consensus 159 vn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR-----~eie~iF~ki 230 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR-----PEIEEIFRKI 230 (1189)
T ss_pred ccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc-----hhHHHHHHHh
Confidence 355667776666665543 12224455544444321 1 1236678888888877663 4789999999
Q ss_pred ccCCCCCcCHHHHHHHHhhc----------CCcCCHHHHHHHHHhhccCCC
Q psy15709 77 DKEETHVSSRDVIVVCHFLR----------DDDVQEKELKEAFRLYDKEEP 117 (121)
Q Consensus 77 D~~~~g~i~~~el~~~l~~~----------~~~~~~~e~~~~~~~~d~~~d 117 (121)
.-++.-++|.++|..+|.+- -+.+++..+..+++.+.+|.+
T Consensus 231 ~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~ 281 (1189)
T KOG1265|consen 231 SGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSD 281 (1189)
T ss_pred ccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchh
Confidence 98888999999999999862 345789999999999988876
No 113
>KOG3555|consensus
Probab=95.15 E-value=0.094 Score=35.29 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcC
Q psy15709 26 IDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRD 97 (121)
Q Consensus 26 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 97 (121)
+...++..||..+|.+.++.++..|+..+.. ...+.-++..|..+|...+|.|+-.|+-..+...+
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l------dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIEL------DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhc------cCchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 4467788999999999999999999887654 33457789999999999999999999888887655
No 114
>KOG4578|consensus
Probab=94.81 E-value=0.023 Score=37.83 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=51.0
Q ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 30 ELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 30 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
.+...|..+|+|.++.|...|+..+-..+.+. .......+..|+.+|.+++..|+..|++..|..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~-s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKK-SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhh-ccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 34678888899999999988876654444332 345577889999999999999999999998864
No 115
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.53 E-value=0.053 Score=27.86 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 65 LEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 65 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
+.+++..+|+.+ .++.++||.++|++.|. +++.+.++..+
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~M 43 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRM 43 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCS
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHC
Confidence 457899999999 77889999999999853 33345566554
No 116
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.37 E-value=0.63 Score=28.36 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCc-----hhhHHHHHHHHHhhccCCCCCcCHHHHHHHHh
Q psy15709 26 IDDVELETVIDEINVESGDKISFEEFLQVACHFLRDD-----DVLEKELKEAFRLYDKEETHVSSRDVIVVCHF 94 (121)
Q Consensus 26 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-----~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 94 (121)
.-.+..+.+|..+++.+.+.+++.|...++..-.... .....+...++... ++.+|.+..+.++.+..
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 4457788999999988888999999999987754421 11223344455554 66799999999988875
No 117
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=93.94 E-value=0.68 Score=27.23 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=30.9
Q ss_pred CceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCC-------CCCcCHHHHHHHHhh-cCCcCCHHHHHHHHHhhc
Q psy15709 44 DKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEE-------THVSSRDVIVVCHFL-RDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 44 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~-------~g~i~~~el~~~l~~-~~~~~~~~e~~~~~~~~d 113 (121)
+.++-.+|.++-... .....+++.+.+.|..+| .+.|+.+-|+.+|+. ++..++++-+.++|..+-
T Consensus 6 ~~lsp~eF~qLq~y~----eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYS----EYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp S-S-HHHHHHHHHHH----HH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred eccCHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 345556665543333 122234555544443222 346777777777775 555677777777776653
No 118
>KOG3555|consensus
Probab=93.45 E-value=0.21 Score=33.74 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 64 VLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 64 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
.....+.-+|..+|.+.+|.++..||+.+-.. -.+.=++.+|...|...||.|+
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS 300 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSIS 300 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccc
Confidence 34577899999999999999999999888643 2344567899999999999885
No 119
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=93.04 E-value=0.31 Score=26.09 Aligned_cols=31 Identities=3% Similarity=0.024 Sum_probs=27.3
Q ss_pred CCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 82 HVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 82 g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
..||.+||.++.++.+.++|+++.+.++..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~l 43 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANIL 43 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999998888765
No 120
>KOG4578|consensus
Probab=92.97 E-value=0.14 Score=34.35 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=44.3
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHH-HHHHHHhccCCCCceeHHHHHHHHHhhcc
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVEL-ETVIDEINVESGDKISFEEFLQVACHFLR 60 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~-~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 60 (121)
+|++.++.|...|+.-+-+.+--......+ ..+++..|.|++.+|++.|+...+.....
T Consensus 342 LdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 342 LDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred ecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 689999999999987664433222223333 67888899999999999999998875544
No 121
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=92.84 E-value=0.55 Score=27.61 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=41.3
Q ss_pred CCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhcc-------CCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccC
Q psy15709 7 RGTIEKEKVRTILNTLGHFIDDVELETVIDEINV-------ESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKE 79 (121)
Q Consensus 7 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 79 (121)
-+.|++.||..+=+...+ +...+..++..+.. +..+.|+|+-|..+|....... .+.+-...+|..|-..
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d-~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD-LPEDLCQHLFLSFQKK 81 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S---HHHHHHHHHHS---
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHhCc
Confidence 467889988776443332 45577777777732 2346799999999999888753 6677778899999654
Q ss_pred C
Q psy15709 80 E 80 (121)
Q Consensus 80 ~ 80 (121)
.
T Consensus 82 ~ 82 (138)
T PF14513_consen 82 P 82 (138)
T ss_dssp -
T ss_pred c
Confidence 4
No 122
>PLN02228 Phosphoinositide phospholipase C
Probab=92.41 E-value=1.3 Score=32.31 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccC----CCCCcCHHHHHHHHhh
Q psy15709 25 FIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKE----ETHVSSRDVIVVCHFL 95 (121)
Q Consensus 25 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~----~~g~i~~~el~~~l~~ 95 (121)
....+++..+|..+.. ++.++.++|..++...........+....+|..|... ..|.++.+.|..+|..
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 4567889999999854 3589999999999887664334456677888877543 3467999999999964
No 123
>KOG0042|consensus
Probab=92.26 E-value=0.29 Score=35.31 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=34.5
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhcc
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 60 (121)
+|.++.|.++..+...+|+..+...+...+..+....+..-+|.+...+|.+++..+..
T Consensus 602 lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 602 LDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred hcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 45555566666666666665555555655666665555555566666666666555433
No 124
>KOG2871|consensus
Probab=92.16 E-value=0.17 Score=34.48 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 63 DVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 63 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
..+..+++++|+.+|+.+.|+|+..-++.++..++..+++.+.-.+++
T Consensus 305 ~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~ 352 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMR 352 (449)
T ss_pred CCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhc
Confidence 346688999999999999999999999999998885566555444443
No 125
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=92.03 E-value=0.38 Score=27.90 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=45.9
Q ss_pred CCCccCHHHHHHHHHhc--CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCC
Q psy15709 6 KRGTIEKEKVRTILNTL--GHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHV 83 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 83 (121)
-+|.++..|...+...+ ....+......+...+..-.....++.+|+..+...... .....-+..++...-.| |.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~r~~ll~~l~~ia~AD--G~ 112 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSP-EEREDLLRMLIAIAYAD--GE 112 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--H-HHHHHHHHHHHHHCTCT--TC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhch-HHHHHHHHHHHHHHhcC--CC
Confidence 37889999988776655 233445556666666654333467888888776653331 34445566777777665 45
Q ss_pred cCHHH
Q psy15709 84 SSRDV 88 (121)
Q Consensus 84 i~~~e 88 (121)
++..|
T Consensus 113 ~~~~E 117 (140)
T PF05099_consen 113 ISPEE 117 (140)
T ss_dssp -SCCH
T ss_pred CCHHH
Confidence 55444
No 126
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=91.68 E-value=0.77 Score=23.19 Aligned_cols=32 Identities=9% Similarity=0.356 Sum_probs=27.9
Q ss_pred CCccCHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q psy15709 7 RGTIEKEKVRTILNTLGHFIDDVELETVIDEI 38 (121)
Q Consensus 7 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 38 (121)
+-.|+.+.++.++.+.|..||+..+++++...
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45689999999999999999999999988765
No 127
>KOG0042|consensus
Probab=91.10 E-value=0.36 Score=34.85 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=46.6
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCC
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSI 120 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i 120 (121)
...+.-|..+|.+..|+++.....++|+..+..++++.+++++..++.+-+|.+
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v 646 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFV 646 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccee
Confidence 334567999999999999999999999998888999999999999988777764
No 128
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=91.07 E-value=1.6 Score=23.95 Aligned_cols=83 Identities=11% Similarity=0.052 Sum_probs=54.5
Q ss_pred CCccCHHHHHHHHHhcC--CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCc
Q psy15709 7 RGTIEKEKVRTILNTLG--HFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVS 84 (121)
Q Consensus 7 ~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 84 (121)
+|.++..|...+-+.+. +.++..+...+...+........++.+|...+..... ......-+..+++..-. +|.+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~l~~L~~vA~A--DG~~ 89 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFD-YEERLELVEALWEVAYA--DGEL 89 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHh--cCCC
Confidence 78999998877765432 3566777777777776555556889999988776542 13344455566666543 5778
Q ss_pred CHHHHHHH
Q psy15709 85 SRDVIVVC 92 (121)
Q Consensus 85 ~~~el~~~ 92 (121)
+..|-.-+
T Consensus 90 ~~~E~~~l 97 (104)
T cd07313 90 DEYEEHLI 97 (104)
T ss_pred CHHHHHHH
Confidence 88775433
No 129
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=90.84 E-value=1.7 Score=23.99 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhcc---CCCCCcCHHHHHHHHhh
Q psy15709 27 DDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDK---EETHVSSRDVIVVCHFL 95 (121)
Q Consensus 27 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~---~~~g~i~~~el~~~l~~ 95 (121)
.-..++.-|..+.. +|.+....|-+++.-. .+.+-..++|..+-. -....|+.+||+.++.+
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~-----dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIGMK-----DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT-------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcCCc-----ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 35678888888866 7899999999998632 233455566666632 12467999999999876
No 130
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.74 E-value=1.1 Score=23.02 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=28.4
Q ss_pred CCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q psy15709 7 RGTIEKEKVRTILNTLGHFIDDVELETVIDEIN 39 (121)
Q Consensus 7 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 39 (121)
+-.|+.+.++.++.+.|..||+..+++++....
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 456889999999999999999999999887753
No 131
>PRK00523 hypothetical protein; Provisional
Probab=90.53 E-value=1.1 Score=23.19 Aligned_cols=32 Identities=13% Similarity=0.345 Sum_probs=28.1
Q ss_pred CCccCHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q psy15709 7 RGTIEKEKVRTILNTLGHFIDDVELETVIDEI 38 (121)
Q Consensus 7 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 38 (121)
+-.|+.+.++..+.+.|..||+..+++++...
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45688999999999999999999999988776
No 132
>KOG3449|consensus
Probab=90.21 E-value=1.9 Score=24.21 Aligned_cols=43 Identities=9% Similarity=-0.018 Sum_probs=37.1
Q ss_pred HHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 70 KEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
-.+|-.++..++...+..+++++|...|..+.++.++.++..+
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel 46 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh
Confidence 3566677777888899999999999999999999999988876
No 133
>KOG2243|consensus
Probab=89.66 E-value=1.1 Score=36.42 Aligned_cols=53 Identities=15% Similarity=0.388 Sum_probs=42.4
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVA 55 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 55 (121)
||+|+.|.|+..+|.+++..- -..+..++.-+..-...+.+...+|++|+.-+
T Consensus 4066 ydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4066 YDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 789999999999999998732 23567778778777777778889999998754
No 134
>KOG1955|consensus
Probab=89.59 E-value=1.1 Score=31.99 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHh---ccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHh
Q psy15709 26 IDDVELETVIDEI---NVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHF 94 (121)
Q Consensus 26 ~~~~~~~~~~~~~---d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 94 (121)
++.+.-+.+...| ..+-.|.|+=.--..++.+. .-+..++..+++..|.+.+|.++..||..++.
T Consensus 225 IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS----klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 225 ITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS----KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred cCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc----cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 4444444443333 23444555544444444433 22335666666666666666666666666654
No 135
>KOG2243|consensus
Probab=89.45 E-value=0.65 Score=37.46 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=37.4
Q ss_pred HHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCC
Q psy15709 71 EAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPM 118 (121)
Q Consensus 71 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg 118 (121)
.-|+.||++|.|.|+..+|.+++... .+.+..+++.++.-+..+.+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend 4107 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADEND 4107 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccc
Confidence 35899999999999999999999753 347888888888766655544
No 136
>KOG1955|consensus
Probab=89.33 E-value=2 Score=30.82 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHH
Q psy15709 6 KRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 54 (121)
-.|.|+-.--+.++.. -.+..+++..+++..|.+.+|.+++.||+..
T Consensus 244 p~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAA 290 (737)
T KOG1955|consen 244 PHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAA 290 (737)
T ss_pred cccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhh
Confidence 3344444444444332 2334445555555555555555555555543
No 137
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=88.65 E-value=1.2 Score=22.49 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=28.5
Q ss_pred HhhccCCCCCcCHHHHHHHHhh----------cCCcCCHHHHHHHHHhhcc
Q psy15709 74 RLYDKEETHVSSRDVIVVCHFL----------RDDDVQEKELKEAFRLYDK 114 (121)
Q Consensus 74 ~~~D~~~~g~i~~~el~~~l~~----------~~~~~~~~e~~~~~~~~d~ 114 (121)
+.||...+.+||.++++++.+. -|..+|..-+-.++-+...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~e~ 60 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEEES 60 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHHHh
Confidence 4578888888999988888875 1556666666666554433
No 138
>PRK01844 hypothetical protein; Provisional
Probab=88.39 E-value=1.9 Score=22.26 Aligned_cols=32 Identities=6% Similarity=0.299 Sum_probs=28.0
Q ss_pred CCccCHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q psy15709 7 RGTIEKEKVRTILNTLGHFIDDVELETVIDEI 38 (121)
Q Consensus 7 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 38 (121)
+-.|+.+.++..+.+.|..||+..+++++...
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34688999999999999999999999988776
No 139
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=88.37 E-value=2.2 Score=21.83 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=26.4
Q ss_pred cCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHH
Q psy15709 10 IEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVA 55 (121)
Q Consensus 10 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 55 (121)
++..++..+++..|+.++.+++..++..-+..+--.++=..+..++
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 4556667777777777777777777766443333334433333333
No 140
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=88.19 E-value=0.6 Score=26.50 Aligned_cols=34 Identities=18% Similarity=0.430 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhh
Q psy15709 25 FIDDVELETVIDEINVESGDKISFEEFLQVACHF 58 (121)
Q Consensus 25 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 58 (121)
.+++++++.++..+-.+..|++.|.+|+.-+..-
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 3678999999999999999999999999876533
No 141
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=88.11 E-value=0.88 Score=24.10 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=14.5
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
.|+||.+++..+|.... ++.+.++.++..+
T Consensus 19 ~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L 48 (82)
T PF03979_consen 19 KGYLTYDEINDALPEDD--LDPEQIDEIYDTL 48 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCccC--CCHHHHHHHHHHH
Confidence 55666666666665333 5666666665544
No 142
>PLN02222 phosphoinositide phospholipase C 2
Probab=87.97 E-value=3.9 Score=29.98 Aligned_cols=68 Identities=7% Similarity=0.097 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhcc-CCCCCcCHHHHHHHHhh
Q psy15709 26 IDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDK-EETHVSSRDVIVVCHFL 95 (121)
Q Consensus 26 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~-~~~g~i~~~el~~~l~~ 95 (121)
....++..+|..+.. ++.++.++|..++...........+....++..+.. ...+.++.+.|..+|..
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 355689999999854 468999999999988766433445556666666532 23567999999999865
No 143
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=87.45 E-value=1.8 Score=23.74 Aligned_cols=14 Identities=7% Similarity=0.449 Sum_probs=6.5
Q ss_pred ceeHHHHHHHHHhh
Q psy15709 45 KISFEEFLQVACHF 58 (121)
Q Consensus 45 ~i~~~ef~~~~~~~ 58 (121)
.|.+.++..+...+
T Consensus 16 ~V~~~~Wk~laR~L 29 (96)
T cd08315 16 EVPFDSWNRLMRQL 29 (96)
T ss_pred HCCHHHHHHHHHHc
Confidence 34444444444444
No 144
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=87.35 E-value=2 Score=21.71 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=32.2
Q ss_pred HHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 70 KEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
+..|+.+=.+ +--|+.+-++.++.++|.+.|+..+..+++.+
T Consensus 19 r~~~~k~l~~-NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 19 RKYMEKQLKE-NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3344444222 34699999999999999999999999988765
No 145
>KOG1265|consensus
Probab=87.12 E-value=13 Score=29.07 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCc--------hhhHHHHHHHHHhhccCC---
Q psy15709 12 KEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDD--------DVLEKELKEAFRLYDKEE--- 80 (121)
Q Consensus 12 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~--------~~~~~~~~~~f~~~D~~~--- 80 (121)
...|..++..+ ....+++.+|..+..+..-.++.++|+.++....... ......+..+.+.|.+++
T Consensus 207 ~e~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a 283 (1189)
T KOG1265|consen 207 LEKFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNA 283 (1189)
T ss_pred HHHHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhh
Confidence 33444555543 3446899999999887778999999999998776532 234466788888886654
Q ss_pred -CCCcCHHHHHHHHhh
Q psy15709 81 -THVSSRDVIVVCHFL 95 (121)
Q Consensus 81 -~g~i~~~el~~~l~~ 95 (121)
+|.++.+-|.++|-.
T Consensus 284 ~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 284 EKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hccccchhhhHHHhhC
Confidence 689999999888864
No 146
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=86.87 E-value=2.9 Score=21.54 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=26.5
Q ss_pred ceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 45 KISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 45 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
.++|...+..+..... .. ....+...|+.=..+.|++++|.+.++.
T Consensus 8 ~~~F~~L~~~l~~~l~--~~---~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 8 WMPFPMLFSALSKHLP--PS---KMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred cccHHHHHHHHHHHCC--HH---HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4666666666666544 22 2333333333335677777777777775
No 147
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=86.45 E-value=3.6 Score=22.11 Aligned_cols=68 Identities=10% Similarity=0.100 Sum_probs=44.1
Q ss_pred ccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccC-chhhHHHHHHHHHhh
Q psy15709 9 TIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRD-DDVLEKELKEAFRLY 76 (121)
Q Consensus 9 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~~f~~~ 76 (121)
.|+..||...-++.|++++.+....+...+..+.-.-.+-.+=..++..+... .......+..+|..|
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 57889999999999999999999888888754433334444444444444331 134445666666655
No 148
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=86.21 E-value=3.9 Score=22.29 Aligned_cols=83 Identities=13% Similarity=0.247 Sum_probs=54.5
Q ss_pred CccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCcee---HHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCc
Q psy15709 8 GTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKIS---FEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVS 84 (121)
Q Consensus 8 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~---~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 84 (121)
|.....+....++.....++..-++.++...... +|+ .+++...+..+ ...-.+.+.......+.-+|
T Consensus 2 ~~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~---Rvs~~A~~~l~~~~e~~------~~~i~~~A~~~A~ha~RKTV 72 (91)
T COG2036 2 GAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE---RVSSSAIEELQEALEEY------LEEIAEDAVELAEHAKRKTV 72 (91)
T ss_pred CcchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH---HhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHcCCCee
Confidence 3444566666666666556666677777776443 444 33333333322 23456677778888899999
Q ss_pred CHHHHHHHHhhcCCc
Q psy15709 85 SRDVIVVCHFLRDDD 99 (121)
Q Consensus 85 ~~~el~~~l~~~~~~ 99 (121)
+.+++..+++.++..
T Consensus 73 ~~~DI~la~~~~~~~ 87 (91)
T COG2036 73 KAEDIKLALKRLGRR 87 (91)
T ss_pred cHHHHHHHHHHhccc
Confidence 999999999988754
No 149
>KOG1029|consensus
Probab=85.81 E-value=1.3 Score=33.47 Aligned_cols=49 Identities=22% Similarity=0.427 Sum_probs=24.4
Q ss_pred cCCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHH
Q psy15709 3 DSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53 (121)
Q Consensus 3 D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 53 (121)
|+..+|+|+-.+-+.+|-.-+ ++...+..++-.-|.+++|+++.++|+-
T Consensus 205 DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfil 253 (1118)
T KOG1029|consen 205 DKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFIL 253 (1118)
T ss_pred ccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHH
Confidence 445555555555555544322 3333444555555555555555555544
No 150
>PRK00523 hypothetical protein; Provisional
Probab=85.14 E-value=2.9 Score=21.63 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=33.5
Q ss_pred HHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 70 KEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
+..|+.+=++ +--|+.+-++.++.++|.+.|+..++.+++.+
T Consensus 27 rk~~~k~l~~-NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQIRE-NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHHH-CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4445555332 44699999999999999999999999998876
No 151
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=84.96 E-value=2.3 Score=23.09 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=16.1
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
++.+.+|..+ .|.+|.++...|..+|++
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d 30 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHD 30 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHH
Confidence 4566677777 556667777766666654
No 152
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=84.66 E-value=5.8 Score=22.98 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHhccCC--CCceeHHHHHHHHHhhcc------Cc----------hhhHHHHHHHHHhhccCCCCCcCHH
Q psy15709 26 IDDVELETVIDEINVES--GDKISFEEFLQVACHFLR------DD----------DVLEKELKEAFRLYDKEETHVSSRD 87 (121)
Q Consensus 26 ~~~~~~~~~~~~~d~~~--~g~i~~~ef~~~~~~~~~------~~----------~~~~~~~~~~f~~~D~~~~g~i~~~ 87 (121)
++-..+...|.....++ +..++..+...++..+.. +. ....--+..++..||+.++|.|+.-
T Consensus 38 v~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vl 117 (127)
T PF09068_consen 38 VDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVL 117 (127)
T ss_dssp --HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHH
T ss_pred eeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehh
Confidence 44556667777776432 467999999998888762 10 1122335677899999999999999
Q ss_pred HHHHHHhhc
Q psy15709 88 VIVVCHFLR 96 (121)
Q Consensus 88 el~~~l~~~ 96 (121)
.++.++..+
T Consensus 118 s~KvaL~~L 126 (127)
T PF09068_consen 118 SFKVALITL 126 (127)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999887643
No 153
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=84.20 E-value=5.7 Score=22.53 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=34.6
Q ss_pred HHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 71 EAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 71 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
.+|-.+-.-++..+|.++++++|...|....+..+..+++.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 4455555667778999999999999999998888888887663
No 154
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=83.21 E-value=2.5 Score=22.29 Aligned_cols=23 Identities=9% Similarity=-0.116 Sum_probs=14.7
Q ss_pred HHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 88 VIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 88 el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
|+..+|+.+|.+++++|...+-.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 66788999999999998766543
No 155
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=83.16 E-value=3 Score=21.10 Aligned_cols=36 Identities=14% Similarity=0.293 Sum_probs=26.4
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCC
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEE 116 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~ 116 (121)
++-++...+.+.|...|..++++.+...++.++.++
T Consensus 11 ~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 11 DKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 456777788887777777777888777777776554
No 156
>KOG3449|consensus
Probab=82.86 E-value=6.3 Score=22.19 Aligned_cols=45 Identities=27% Similarity=0.494 Sum_probs=35.4
Q ss_pred CCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHH
Q psy15709 4 SGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53 (121)
Q Consensus 4 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 53 (121)
.-++...+..++.++|.+.|.....+.++.++..+ +|+ +.++.+.
T Consensus 12 lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA 56 (112)
T KOG3449|consen 12 LGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIA 56 (112)
T ss_pred hcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHH
Confidence 34566788899999999999999999999999887 233 5666655
No 157
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=82.76 E-value=2.1 Score=16.50 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=10.2
Q ss_pred cCCCCCccCHHHHHHH
Q psy15709 3 DSGKRGTIEKEKVRTI 18 (121)
Q Consensus 3 D~~~~g~i~~~el~~~ 18 (121)
|.+++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5567777777776554
No 158
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=82.62 E-value=2.7 Score=25.54 Aligned_cols=48 Identities=8% Similarity=-0.032 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 63 DVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 63 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
-.+..++..|++.+-..+...++..+|.+.+- .|+.+|+++++..+..
T Consensus 81 lkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~ 128 (164)
T PF04558_consen 81 LKTNLQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEK 128 (164)
T ss_dssp --SHHHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHH
Confidence 34668899999999777777899999888864 5778999999887654
No 159
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=82.42 E-value=8.3 Score=23.08 Aligned_cols=65 Identities=8% Similarity=0.096 Sum_probs=45.6
Q ss_pred HHHHHh---ccCCCCceeHHHHHHHHHhhcc-CchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcC
Q psy15709 33 TVIDEI---NVESGDKISFEEFLQVACHFLR-DDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRD 97 (121)
Q Consensus 33 ~~~~~~---d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 97 (121)
.+|..| ...+...++-..|..+|....- ....+...+..+|..+-..+...|+.++|..+|..+.
T Consensus 3 ~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 3 AVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 444444 2345567999999999877644 2235667888999998666667799999999998763
No 160
>KOG3866|consensus
Probab=82.31 E-value=4.4 Score=27.36 Aligned_cols=58 Identities=16% Similarity=0.311 Sum_probs=41.0
Q ss_pred CCcCCCCCccCHHHHHHHHHh-c--CCCCCHH--H-----------HHHHHHHhccCCCCceeHHHHHHHHHhh
Q psy15709 1 MFDSGKRGTIEKEKVRTILNT-L--GHFIDDV--E-----------LETVIDEINVESGDKISFEEFLQVACHF 58 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~-~--~~~~~~~--~-----------~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 58 (121)
+.|.+++|.++..+|..++.. + .++++.+ + -+.++..+|.+.+.-|+.++|+......
T Consensus 252 LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 252 LHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred eeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 468899999999999888753 2 1233221 1 1346778899999999999998875544
No 161
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=82.29 E-value=3.7 Score=23.00 Aligned_cols=64 Identities=13% Similarity=0.246 Sum_probs=34.9
Q ss_pred hccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhc---CC-cCCHHHHHHHHHhhc
Q psy15709 38 INVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLR---DD-DVQEKELKEAFRLYD 113 (121)
Q Consensus 38 ~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~---~~-~~~~~e~~~~~~~~d 113 (121)
||...+..|+.++..+++..- .-|+..|.....-||+.-|.+++.+. |. -++..-+..++..++
T Consensus 12 YDT~tS~YITLedi~~lV~~g------------~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVREG------------REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred cCCCccceeeHHHHHHHHHCC------------CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 455555566666666665322 33555665544456666666666543 22 245666666665543
No 162
>PRK01844 hypothetical protein; Provisional
Probab=81.50 E-value=5 Score=20.79 Aligned_cols=42 Identities=5% Similarity=0.114 Sum_probs=33.4
Q ss_pred HHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 70 KEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
+..|+.+=++ +--|+.+-++.++.++|.+.|+..++.+++.+
T Consensus 26 rk~~~k~lk~-NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 26 RKYMMNYLQK-NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4445555333 33699999999999999999999999998876
No 163
>KOG0035|consensus
Probab=81.01 E-value=18 Score=28.15 Aligned_cols=69 Identities=19% Similarity=0.039 Sum_probs=48.0
Q ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhh---ccCCCCCcCHHHHHHHHhhcC
Q psy15709 29 VELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLY---DKEETHVSSRDVIVVCHFLRD 97 (121)
Q Consensus 29 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~---D~~~~g~i~~~el~~~l~~~~ 97 (121)
.+++.++..+++...+..++++|..++..........+.-+...|+.. |+...|.++..++...|..-.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 455777888887777889999999998877664322233344444444 666678899999988887533
No 164
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=81.00 E-value=4.8 Score=20.62 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=27.0
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhcCC----cCCHHHHHHHHHhh
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDD----DVQEKELKEAFRLY 112 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~----~~~~~e~~~~~~~~ 112 (121)
.++..+|+.-+ -.||..++..+|++-+. .++++.+..++..+
T Consensus 17 ~~m~~if~l~~----~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 17 DDMIEIFALAG----FEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred HHHHHHHHHcC----CccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 45666666654 35888888888876532 46777776666543
No 165
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.61 E-value=5.4 Score=20.52 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=31.9
Q ss_pred HHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 71 EAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 71 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
..++.+=++ +--|+.+-++.++.++|.+.|+..+.++++.+
T Consensus 27 k~~~k~lk~-NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 27 KQMKKQLKD-NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred HHHHHHHhh-CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 344444333 34699999999999999999999999998765
No 166
>KOG4004|consensus
Probab=80.54 E-value=0.65 Score=29.03 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=34.1
Q ss_pred CCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHH
Q psy15709 42 SGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCH 93 (121)
Q Consensus 42 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l 93 (121)
-+|+++-.+++.+-..+ ..++..+...|+-+|.+++|+|+.+|+...+
T Consensus 201 ~d~~~sh~el~pl~ap~----ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPL----IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccccccccccccCCc----ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 34556666655544333 4456778899999999999999998876554
No 167
>KOG3866|consensus
Probab=79.88 E-value=6.5 Score=26.59 Aligned_cols=83 Identities=11% Similarity=0.137 Sum_probs=48.0
Q ss_pred HHHHHHHHHhc-CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhcc----Cc---hh---hH-HH---HHHHHHhh
Q psy15709 12 KEKVRTILNTL-GHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR----DD---DV---LE-KE---LKEAFRLY 76 (121)
Q Consensus 12 ~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~----~~---~~---~~-~~---~~~~f~~~ 76 (121)
..+|..++... |+.+..-.-..+|...|.+++|.++=.++-.++..-.. +. .. .. +. -..+.+..
T Consensus 226 kdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~v 305 (442)
T KOG3866|consen 226 KDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQV 305 (442)
T ss_pred HHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 34444444433 33333323344666677888899887777666544322 11 00 11 11 13467788
Q ss_pred ccCCCCCcCHHHHHHHHh
Q psy15709 77 DKEETHVSSRDVIVVCHF 94 (121)
Q Consensus 77 D~~~~g~i~~~el~~~l~ 94 (121)
|.+.+..||.+||...-.
T Consensus 306 DtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 306 DTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred ccchhhhhhHHHHHhhhh
Confidence 999999999999876654
No 168
>KOG1707|consensus
Probab=79.48 E-value=7.3 Score=28.63 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhhccCCCCCcCHHHHHHHHh-hcCCcCCHHHHHHHHHhh
Q psy15709 65 LEKELKEAFRLYDKEETHVSSRDVIVVCHF-LRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 65 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~-~~~~~~~~~e~~~~~~~~ 112 (121)
....+..+|+..|.|.+|.++-.|+-.+-+ .++.+++..+++.+-...
T Consensus 193 ~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv 241 (625)
T KOG1707|consen 193 CVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVV 241 (625)
T ss_pred HHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHH
Confidence 446678899999999999999999988777 478888888887765443
No 169
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=79.48 E-value=8.2 Score=21.16 Aligned_cols=27 Identities=4% Similarity=0.047 Sum_probs=21.0
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHH
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAF 109 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~ 109 (121)
.-|...|..+|+.++.+...+.++..+
T Consensus 64 ~At~~~L~~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 64 KASVNTLLDALEAIGLRLAKESIQDEL 90 (96)
T ss_pred CcHHHHHHHHHHHcccccHHHHHHHHH
Confidence 466888888888888888877776654
No 170
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=79.39 E-value=3.4 Score=21.30 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=32.8
Q ss_pred CCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhcc
Q psy15709 7 RGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60 (121)
Q Consensus 7 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 60 (121)
+-++++..|-.++... ++...+..+...|+.=..+.|+.++|++.+..+-.
T Consensus 6 sp~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCcccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3456666666666542 44445555555554334678999999999987744
No 171
>PLN02230 phosphoinositide phospholipase C 4
Probab=79.32 E-value=17 Score=27.01 Aligned_cols=69 Identities=9% Similarity=-0.009 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCc-hhhHHHHHHHHHhh-------ccCCCCCcCHHHHHHHHhh
Q psy15709 26 IDDVELETVIDEINVESGDKISFEEFLQVACHFLRDD-DVLEKELKEAFRLY-------DKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 26 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~~f~~~-------D~~~~g~i~~~el~~~l~~ 95 (121)
....++..+|..+..++ +.++.++|..++....... ....+....++..+ ..-+.+.++.+.|..+|..
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 35678999999996443 7999999999998876421 12334444455433 1223456999999998864
No 172
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.12 E-value=11 Score=22.39 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=63.6
Q ss_pred CCCccCHHHHHHHHHhc--CCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCC
Q psy15709 6 KRGTIEKEKVRTILNTL--GHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHV 83 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 83 (121)
-+|.++..|...+..-+ .+.++.+++..+......-+...+++..|...+...... ....+-+..+.+..- .+|.
T Consensus 41 ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~-e~R~eli~~mweIa~--ADg~ 117 (148)
T COG4103 41 ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDE-EQRLELIGLMWEIAY--ADGE 117 (148)
T ss_pred cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHH--cccc
Confidence 47888888876665433 467888899888888776677889999999988765442 223344555566554 4667
Q ss_pred cCHHHHHHHHhh---cCCcCCHHHH
Q psy15709 84 SSRDVIVVCHFL---RDDDVQEKEL 105 (121)
Q Consensus 84 i~~~el~~~l~~---~~~~~~~~e~ 105 (121)
++..|-.-+++- +| ++.++.
T Consensus 118 l~e~Ed~vi~RvAeLLg--V~~~d~ 140 (148)
T COG4103 118 LDESEDHVIWRVAELLG--VSPEDR 140 (148)
T ss_pred ccHHHHHHHHHHHHHhC--CCHHHH
Confidence 777776555553 56 555443
No 173
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=79.09 E-value=5.1 Score=18.53 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcc--CCCCCcCHHHHHHHHhh
Q psy15709 67 KELKEAFRLYDK--EETHVSSRDVIVVCHFL 95 (121)
Q Consensus 67 ~~~~~~f~~~D~--~~~g~i~~~el~~~l~~ 95 (121)
..+..+|+.|.. ....+++..||+..+..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 456778888852 23568999999999875
No 174
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=78.11 E-value=10 Score=21.42 Aligned_cols=42 Identities=12% Similarity=-0.007 Sum_probs=33.4
Q ss_pred HHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 71 EAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 71 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
.+|-.+-..++..+|.++++.+|+..|..+.+..+..+++.+
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L 46 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISEL 46 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 345555566777899999999999999888888887777765
No 175
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=77.23 E-value=5.6 Score=21.43 Aligned_cols=58 Identities=9% Similarity=0.186 Sum_probs=38.9
Q ss_pred ceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 45 KISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 45 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
.+++.+++.. .+... ......-..+-+.+ +=|+.+...|.+.|..+| +|.+++.++++
T Consensus 30 ~it~~dL~~~--GL~g~-~~s~~rR~~l~~~L---~iGy~N~KqllkrLN~f~--it~~e~~~alk 87 (87)
T PF13331_consen 30 EITWEDLIEL--GLIGG-PDSKERREKLGEYL---GIGYGNAKQLLKRLNMFG--ITREEFEEALK 87 (87)
T ss_pred cCCHHHHHHC--CCCCC-ccHHHHHHHHHHHH---CCCCCCHHHHHHHHHHcC--CCHHHHHHHhC
Confidence 5899998885 12111 12223334445555 348899999999999888 89999888763
No 176
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=76.82 E-value=6.6 Score=22.20 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=22.8
Q ss_pred cCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 84 SSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 84 i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
-+.+|++.++......+++++++.++..+
T Consensus 79 ~~~dElrai~~~~~~~~~~e~l~~ILd~l 107 (112)
T PRK14981 79 ETRDELRAIFAKERYTLSPEELDEILDIV 107 (112)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 35788888888887778888888887654
No 177
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=76.25 E-value=19 Score=23.70 Aligned_cols=99 Identities=11% Similarity=0.041 Sum_probs=56.7
Q ss_pred CCCccCHHHHHHHHHhc--CCCCCHHH---HHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhH-HHHHHHHHhhccC
Q psy15709 6 KRGTIEKEKVRTILNTL--GHFIDDVE---LETVIDEINVESGDKISFEEFLQVACHFLRDDDVLE-KELKEAFRLYDKE 79 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~--~~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~-~~~~~~f~~~D~~ 79 (121)
-+|.|+..|.. +.+.+ .+.++.+. +..+|.. ......++.+|+.-+........... .-+..+|+..=
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~---~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~-- 141 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFRE---GKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAF-- 141 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHH---hcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--
Confidence 37899999987 33332 13445555 4445544 33345889999998876654321111 11244444443
Q ss_pred CCCCcCHHHHHHHHh---hcCCcCCHHHHHHHHHhh
Q psy15709 80 ETHVSSRDVIVVCHF---LRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 80 ~~g~i~~~el~~~l~---~~~~~~~~~e~~~~~~~~ 112 (121)
.+|.++..|-.-+.+ .+| ++..++..+...+
T Consensus 142 ADG~l~~~E~~~L~~Ia~~Lg--is~~df~~~~~~~ 175 (267)
T PRK09430 142 ADGSLHPNERQVLYVIAEELG--FSRFQFDQLLRMM 175 (267)
T ss_pred hcCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 357798888433322 345 7888887776653
No 178
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=76.21 E-value=16 Score=25.05 Aligned_cols=103 Identities=16% Similarity=0.086 Sum_probs=58.6
Q ss_pred CCCCccCHHHHHHHHHhcCCCCC----------HHHHHHHHHHhccCCCCceeHHHHHHHHHhhcc-CchhhHHHHHHHH
Q psy15709 5 GKRGTIEKEKVRTILNTLGHFID----------DVELETVIDEINVESGDKISFEEFLQVACHFLR-DDDVLEKELKEAF 73 (121)
Q Consensus 5 ~~~g~i~~~el~~~l~~~~~~~~----------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~~f 73 (121)
++.+.++..+...++..++++.. .+++..++......+-.-|=...--.....+.- .....-.+++.+|
T Consensus 137 ~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVlK~~~~~~~~~Ky~t~~~~~~di~~~~ 216 (342)
T cd07894 137 NTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVLKDPDMRVPPLKYTTSYSNCSDIRYAF 216 (342)
T ss_pred CCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEEeccccccCcceeecCCCCcHHHHHHh
Confidence 44567889999999998875422 255666666665432222221111110000000 0123446788888
Q ss_pred HhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHH
Q psy15709 74 RLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKE 107 (121)
Q Consensus 74 ~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~ 107 (121)
+.+-.-+.++....=++..+.......++++.++
T Consensus 217 ~~~~d~~~~~~~~Ri~R~~~~~~E~~~~~~~~~~ 250 (342)
T cd07894 217 RYPFDLGRDFFFSRIVREGFQSVELGESEEELEE 250 (342)
T ss_pred hhccccCchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 8887777788887777777776555555555544
No 179
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=76.16 E-value=10 Score=20.41 Aligned_cols=71 Identities=14% Similarity=-0.084 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCC
Q psy15709 25 FIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDD 98 (121)
Q Consensus 25 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~ 98 (121)
.++..+...+....-.+ .--|.+.+|.+.+...-.- ....+...+=..+|--.+++|+.=||--+.+-+++
T Consensus 3 rITK~eA~~FW~~~Fg~-r~IVPW~~F~~~L~~~h~~--~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFqP 73 (85)
T PF02761_consen 3 RITKAEAAEFWKTSFGK-RTIVPWSEFRQALQKVHPI--SSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQP 73 (85)
T ss_dssp --SSHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS----SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT--
T ss_pred eeccHHHHHHHHHHCCC-CeEeeHHHHHHHHHHhcCC--CchHHHHHHHHHHhcccCCccchhhhHHHHHHHhh
Confidence 45566666666655333 3469999999988877662 22233334445568888999999888888777664
No 180
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=75.44 E-value=6.9 Score=19.57 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=18.0
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHH
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKE 107 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~ 107 (121)
.|+.++|..+|+.....++.+++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4778888888887777777777754
No 181
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=74.70 E-value=6.6 Score=24.36 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=22.2
Q ss_pred ccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 77 DKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 77 D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
..+.+|++..++|.+.++.-+..++.+++.+++..-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 566788999999888888767668888888888653
No 182
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=74.35 E-value=9.2 Score=20.45 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=11.3
Q ss_pred CceeHHHHHHHHHhhcc
Q psy15709 44 DKISFEEFLQVACHFLR 60 (121)
Q Consensus 44 g~i~~~ef~~~~~~~~~ 60 (121)
..++|+++++-+..+.+
T Consensus 18 ~~~s~e~L~~~v~~~c~ 34 (83)
T cd06404 18 PSISLEELCNEVRDMCR 34 (83)
T ss_pred CCcCHHHHHHHHHHHhC
Confidence 46778887777665544
No 183
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=73.31 E-value=27 Score=24.35 Aligned_cols=106 Identities=9% Similarity=0.045 Sum_probs=64.3
Q ss_pred CcCCCCCccCHHHHHHHHHhcCCCC-------CHH----HHHHHHHHhccCCCCceeHHHHHHHHHhhcc-CchhhHHHH
Q psy15709 2 FDSGKRGTIEKEKVRTILNTLGHFI-------DDV----ELETVIDEINVESGDKISFEEFLQVACHFLR-DDDVLEKEL 69 (121)
Q Consensus 2 ~D~~~~g~i~~~el~~~l~~~~~~~-------~~~----~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~ 69 (121)
+|.+....++.++...++..+|++. +.+ ++..++..++..+..-|-+.+-......+.- .....-.++
T Consensus 166 ~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~~~~~KYtT~~~n~~Di 245 (374)
T TIGR01209 166 REGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMRVKPLKYTTSYANINDI 245 (374)
T ss_pred EECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccccCCcceeecCccChHHH
Confidence 3455678899999999999887653 222 3455666666555444554333221111110 113344778
Q ss_pred HHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHH
Q psy15709 70 KEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKE 107 (121)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~ 107 (121)
+.+|+.+-.-+.++....=++..+.......+++++++
T Consensus 246 ~~~~~~~~d~g~df~~sRi~Re~f~~~E~~~~~~e~~~ 283 (374)
T TIGR01209 246 KYAARYFFELGRDFFFSRILREAFQSYEFGEKGEEFRR 283 (374)
T ss_pred HHHHhhccccCchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 88888886667778877777777766555566666533
No 184
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=72.89 E-value=13 Score=20.03 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHhccCCCCcee---HHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCc
Q psy15709 25 FIDDVELETVIDEINVESGDKIS---FEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDD 99 (121)
Q Consensus 25 ~~~~~~~~~~~~~~d~~~~g~i~---~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~ 99 (121)
.++..-+..+.... |-..|+ |++....+..+. .+-++.+.......+..+|+.+++..+++..|.+
T Consensus 13 gi~k~~I~RLarr~---GvkRIS~d~y~e~~~~l~~~l------~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 13 GITKPAIRRLARRG---GVKRISGGVYDEVRNVLKSYL------EDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred cCCHHHHHHHHHHc---CcchhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 46667777777663 455666 666666555432 2456677777777888899999999999988854
No 185
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=72.58 E-value=9.9 Score=23.48 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=23.8
Q ss_pred ccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 77 DKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 77 D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
..|.+|.+..++|.+.++..+..++.+++.+++..
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 34567777777777777654555777777777654
No 186
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=72.24 E-value=9 Score=22.62 Aligned_cols=31 Identities=6% Similarity=0.028 Sum_probs=21.4
Q ss_pred cCHHHHHHHHhhcCCcCCHHHHHHHHHhhcc
Q psy15709 84 SSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114 (121)
Q Consensus 84 i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~ 114 (121)
.|+++++.+...++..+|++|+..++..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 4677777776666666777777777777654
No 187
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=72.23 E-value=9.9 Score=20.52 Aligned_cols=28 Identities=14% Similarity=-0.027 Sum_probs=19.5
Q ss_pred cCHHHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 84 SSRDVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 84 i~~~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
|+.++++++.+-....+++++++.+...
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4667777777766777888887665443
No 188
>PLN02230 phosphoinositide phospholipase C 4
Probab=71.35 E-value=16 Score=27.09 Aligned_cols=49 Identities=8% Similarity=0.071 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcC--C-cCCHHHHHHHHHhh
Q psy15709 63 DVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRD--D-DVQEKELKEAFRLY 112 (121)
Q Consensus 63 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~--~-~~~~~e~~~~~~~~ 112 (121)
..+..+++.+|..|-.++ ++++.++|..+|.+.. + ..+.+++..++..+
T Consensus 25 ~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~ 76 (598)
T PLN02230 25 SGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEV 76 (598)
T ss_pred CCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 346688999999996444 7999999999999754 2 35677777777644
No 189
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=71.31 E-value=15 Score=20.24 Aligned_cols=78 Identities=5% Similarity=0.105 Sum_probs=45.9
Q ss_pred ccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHH
Q psy15709 9 TIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDV 88 (121)
Q Consensus 9 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e 88 (121)
.++..++..+.+.+| +++.++..+-..+.. -..++-.+++..+.. .....-+...
T Consensus 17 ~~~~~~wK~faR~lg--lse~~Id~I~~~~~~-----d~~Eq~~qmL~~W~~------------------~~G~~a~~~~ 71 (97)
T cd08316 17 VMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQ-----DTAEQKVQLLRAWYQ------------------SHGKTGAYRT 71 (97)
T ss_pred HcCHHHHHHHHHHcC--CCHHHHHHHHHcCCC-----ChHHHHHHHHHHHHH------------------HhCCCchHHH
Confidence 356677777777766 455566655544311 125555555544432 1112234577
Q ss_pred HHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 89 IVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 89 l~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
|..+|+.++.....+.+..+++.
T Consensus 72 Li~aLr~~~l~~~Ad~I~~~l~~ 94 (97)
T cd08316 72 LIKTLRKAKLCTKADKIQDIIEA 94 (97)
T ss_pred HHHHHHHccchhHHHHHHHHHHh
Confidence 88888888877777777776653
No 190
>KOG4403|consensus
Probab=70.70 E-value=4.1 Score=28.67 Aligned_cols=75 Identities=7% Similarity=0.037 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcC-CcCCHHH
Q psy15709 26 IDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRD-DDVQEKE 104 (121)
Q Consensus 26 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~e 104 (121)
++-+.++.+-...|.+.+|.|+.+|=-.++..-++.. ....+-.+.|+. .+..|+.++|=.++..-. ..+|.++
T Consensus 65 lg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~-~~~~kr~~~fH~----dD~~ItVedLWeaW~~Sev~nWT~e~ 139 (575)
T KOG4403|consen 65 LGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYR-DSTRKRSEKFHG----DDKHITVEDLWEAWKESEVHNWTNER 139 (575)
T ss_pred hhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcc-cchhhhhhhccC----CccceeHHHHHHHHHhhhhhcchHHH
Confidence 4446667777777777777777777777776665542 333333335554 245677777766555432 3455555
Q ss_pred H
Q psy15709 105 L 105 (121)
Q Consensus 105 ~ 105 (121)
+
T Consensus 140 t 140 (575)
T KOG4403|consen 140 T 140 (575)
T ss_pred H
Confidence 4
No 191
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=69.84 E-value=18 Score=20.57 Aligned_cols=41 Identities=10% Similarity=-0.035 Sum_probs=31.4
Q ss_pred HHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 72 AFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 72 ~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
+|-..-..++..+|.++++++|...|..+....+..+++.+
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L 46 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEV 46 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 34444455666799999999999999888888887777665
No 192
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=69.60 E-value=16 Score=19.87 Aligned_cols=64 Identities=8% Similarity=0.044 Sum_probs=37.2
Q ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhhccC---------chhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 29 VELETVIDEINVESGDKISFEEFLQVACHFLRD---------DDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 29 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~---------~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
+..+.+|..+ .+++|.++...|-.++.....- -...+..++..|+.-- .+..|+.++|..++..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 3456677777 4567888888887777665440 0224556677777752 4556888888888764
No 193
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=69.29 E-value=13 Score=20.07 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=21.9
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
.|+.++++++.+.....++++++..+.+.
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~ 30 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQ 30 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 47888888888877777888887665443
No 194
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.87 E-value=12 Score=21.37 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=25.0
Q ss_pred cCHHHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 84 SSRDVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 84 i~~~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
-|..|++.++..-+..+++++++.++.-.+
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 368899999998888889999999886543
No 195
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=68.19 E-value=19 Score=20.23 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=34.0
Q ss_pred CCcCCCCCccCHHHHHHHHHhc----------CCCCCHHHHHHHHHHhccCCCCceeHHHHHH
Q psy15709 1 MFDSGKRGTIEKEKVRTILNTL----------GHFIDDVELETVIDEINVESGDKISFEEFLQ 53 (121)
Q Consensus 1 ~~D~~~~g~i~~~el~~~l~~~----------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 53 (121)
|||...+-+|+.+++..+++.- |-+++...+-+++-+....+...++-.-+.+
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~q 73 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQ 73 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 6899999999999999998842 4445555555555554444444444433333
No 196
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=67.93 E-value=12 Score=17.83 Aligned_cols=30 Identities=10% Similarity=-0.033 Sum_probs=21.3
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccC
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKE 115 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~ 115 (121)
.|.|+..+++.++ | +|..-+-.+++.+|..
T Consensus 8 ~~~itv~~~rd~l---g--~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLL---G--LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHH---T--S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHH---C--ccHHHHHHHHHHHhcc
Confidence 6778888888877 3 6777777777777654
No 197
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=67.79 E-value=8.8 Score=17.92 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=13.4
Q ss_pred CHHHHHHHHHhcCCCCCHHHH
Q psy15709 11 EKEKVRTILNTLGHFIDDVEL 31 (121)
Q Consensus 11 ~~~el~~~l~~~~~~~~~~~~ 31 (121)
+.+++..+.+..|+.++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 556666666666777666554
No 198
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=67.71 E-value=11 Score=21.03 Aligned_cols=40 Identities=5% Similarity=-0.016 Sum_probs=26.7
Q ss_pred HHhhccCCCCCcCHH----HHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 73 FRLYDKEETHVSSRD----VIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 73 f~~~D~~~~g~i~~~----el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
-+.+...++|.--.. -+...|...|+++|+++++.+++.+
T Consensus 57 eq~~~~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 57 EQVAKEGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 334444446655544 4456677789999999999988753
No 199
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=67.69 E-value=13 Score=23.15 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=19.5
Q ss_pred CCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q psy15709 4 SGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEIN 39 (121)
Q Consensus 4 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 39 (121)
.+.+|+++.+++...++.-+..++.+++..++...+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 456777777777777766555666777777766543
No 200
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=67.55 E-value=12 Score=17.55 Aligned_cols=32 Identities=13% Similarity=-0.021 Sum_probs=21.7
Q ss_pred CCCcC-HHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 81 THVSS-RDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 81 ~g~i~-~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
.|.|+ ..++...|...|..++++.++.+++.+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 56665 444555556668888888888887654
No 201
>KOG0506|consensus
Probab=67.36 E-value=43 Score=24.38 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=38.9
Q ss_pred CCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHh---cc-----CCCCceeHHHHHHHHHhh
Q psy15709 6 KRGTIEKEKVRTILNTLGHFIDDVELETVIDEI---NV-----ESGDKISFEEFLQVACHF 58 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~g~i~~~ef~~~~~~~ 58 (121)
+++.++...|-++|++.|+.-++..+..+++.+ ++ ...+.++-+.|..++...
T Consensus 99 q~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sS 159 (622)
T KOG0506|consen 99 QSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSS 159 (622)
T ss_pred CcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccc
Confidence 358899999999999999987777776666554 32 233568888888876554
No 202
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=67.33 E-value=17 Score=22.47 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHH
Q psy15709 4 SGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFE 49 (121)
Q Consensus 4 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 49 (121)
.|.+|+++.++|...++.-+...+.+.+..+...-+ .++..+.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~---K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD---KGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC---CcceEec
Confidence 467899999999988875555678888888776643 4445544
No 203
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=66.94 E-value=13 Score=19.67 Aligned_cols=26 Identities=4% Similarity=-0.175 Sum_probs=18.6
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
.++...++.+.+.+| +|+.+++.+-.
T Consensus 8 ~v~~~~wk~~~R~LG--lse~~Id~ie~ 33 (80)
T cd08313 8 EVPPRRWKEFVRRLG--LSDNEIERVEL 33 (80)
T ss_pred hCCHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 367778888888888 77777766543
No 204
>KOG0039|consensus
Probab=66.62 E-value=17 Score=27.27 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=38.8
Q ss_pred eeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhc---C-----CcCCHHHHHHHHHhhccCCC
Q psy15709 46 ISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLR---D-----DDVQEKELKEAFRLYDKEEP 117 (121)
Q Consensus 46 i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~---~-----~~~~~~e~~~~~~~~d~~~d 117 (121)
+++++|. ... ...+..++..|..+|. ++|.++.+++..++... + ...+.+-...+++..|.++.
T Consensus 4 ~~~~~~~-----~~~--~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (646)
T KOG0039|consen 4 ISFQELK-----ITD--CSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHK 75 (646)
T ss_pred cchhhhc-----ccC--CChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccccc
Confidence 6777777 111 3445667777777777 77788887777776642 1 12233344455666666655
Q ss_pred C
Q psy15709 118 M 118 (121)
Q Consensus 118 g 118 (121)
|
T Consensus 76 ~ 76 (646)
T KOG0039|consen 76 G 76 (646)
T ss_pred c
Confidence 4
No 205
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=65.72 E-value=15 Score=18.22 Aligned_cols=31 Identities=13% Similarity=0.387 Sum_probs=24.1
Q ss_pred CccCHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q psy15709 8 GTIEKEKVRTILNTLGHFIDDVELETVIDEI 38 (121)
Q Consensus 8 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 38 (121)
-.+|.+|+...+..++-.++..++-.++..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4578888888888888888888877777665
No 206
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=65.46 E-value=20 Score=19.51 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=45.8
Q ss_pred CCccCHHHHHHHHHhcC--CC---CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCC
Q psy15709 7 RGTIEKEKVRTILNTLG--HF---IDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEET 81 (121)
Q Consensus 7 ~g~i~~~el~~~l~~~~--~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 81 (121)
+|.++..|...+.+.+. .. .....+..++...-..- ...+..++...+..... ......-+..++..... +
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ia~a--D 91 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLP-PELRETAFAVAVDIAAA--D 91 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHc--c
Confidence 78899999888877653 22 33445555555443220 13556777777766554 13444455566666654 5
Q ss_pred CCcCHHHH
Q psy15709 82 HVSSRDVI 89 (121)
Q Consensus 82 g~i~~~el 89 (121)
|.++..|-
T Consensus 92 G~~~~~E~ 99 (111)
T cd07176 92 GEVDPEER 99 (111)
T ss_pred CCCCHHHH
Confidence 67777663
No 207
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=64.87 E-value=24 Score=20.09 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=33.0
Q ss_pred CCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHH
Q psy15709 6 KRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 53 (121)
++..++..++.++|...|..+...++..++..+. ..+.++++.
T Consensus 16 G~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 16 GNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred CCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 4556889999999999998888888888888872 145666665
No 208
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=64.85 E-value=9.2 Score=20.32 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=32.4
Q ss_pred CceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCC--CcCHHHHHHHHhh
Q psy15709 44 DKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETH--VSSRDVIVVCHFL 95 (121)
Q Consensus 44 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g--~i~~~el~~~l~~ 95 (121)
-.++|.+.+..+...+.+ ....||+.-|.+|+. .=+-+|++.++.-
T Consensus 21 ~~L~F~DvL~~I~~vlp~------aT~tAFeYEDE~gDRITVRSDeEm~AMlsy 68 (91)
T cd06395 21 PQLLFRDVLDVIGQVLPE------ATTTAFEYEDEDGDRITVRSDEEMKAMLSY 68 (91)
T ss_pred ccccHHHHHHHHHHhccc------ccccceeeccccCCeeEecchHHHHHHHHH
Confidence 358999999999887774 345788888888774 2235666666653
No 209
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=64.53 E-value=14 Score=20.79 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 86 RDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 86 ~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
..|++.++..+..++++++++.++...
T Consensus 87 ~~El~~ii~~~~~r~~ee~l~~iL~~v 113 (117)
T PF03874_consen 87 AVELRAIIESLESRFSEEDLEEILDLV 113 (117)
T ss_dssp HHHHHHHSTTGTTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 455555555556667888887777643
No 210
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=64.48 E-value=6 Score=17.41 Aligned_cols=27 Identities=11% Similarity=-0.033 Sum_probs=14.1
Q ss_pred CcCHHHHHHHHhhcCCcC----CHHHHHHHH
Q psy15709 83 VSSRDVIVVCHFLRDDDV----QEKELKEAF 109 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~----~~~e~~~~~ 109 (121)
.++..+++.+|.+.|+.+ ...++-.+|
T Consensus 3 sltV~~Lk~iL~~~~I~~ps~AkKaeLv~L~ 33 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEFPSNAKKAELVALF 33 (35)
T ss_dssp T--SHHHHHHHHHHT---SSS--SHHHHHH-
T ss_pred cCcHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence 467788899998887654 344554444
No 211
>KOG0998|consensus
Probab=64.41 E-value=6 Score=30.49 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCCCC
Q psy15709 66 EKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSIV 121 (121)
Q Consensus 66 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~i~ 121 (121)
...+..+|...|.+.+|.|+..+.+..+...| ++...+...-...|..+.|.++
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls 335 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLS 335 (847)
T ss_pred HHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCccc
Confidence 34556678888888888888888777777655 7777777777777777776653
No 212
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=64.05 E-value=9.8 Score=23.67 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCC
Q psy15709 65 LEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDD 98 (121)
Q Consensus 65 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~ 98 (121)
..+..+++|..||+..=-..+.+++.++|...|+
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gI 86 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGI 86 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcch
Confidence 3467899999999999889999999999988775
No 213
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=63.86 E-value=24 Score=19.78 Aligned_cols=29 Identities=10% Similarity=0.049 Sum_probs=26.1
Q ss_pred cCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 84 SSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 84 i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
+|.++++++|...|..+.++.+..+++.+
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 99999999999999999998888888775
No 214
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=63.81 E-value=27 Score=20.42 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=30.2
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccC
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKE 115 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~ 115 (121)
+-+..|-+.+....=..-+.+.=+.+|+.=| ++++||+++++.....
T Consensus 4 ~li~~A~~FL~~p~V~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a~~~ 50 (136)
T PF04695_consen 4 DLIEQAVKFLQDPKVRNSPLEKKIAFLESKG--LTEEEIDEALGRAGSP 50 (136)
T ss_dssp HHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT----HHHHHHHHHHHT--
T ss_pred HHHHHHHHHhCCcccccCCHHHHHHHHHcCC--CCHHHHHHHHHhcCCc
Confidence 4455666666555555566777788888777 9999999999887543
No 215
>KOG1264|consensus
Probab=63.49 E-value=20 Score=27.90 Aligned_cols=88 Identities=18% Similarity=0.285 Sum_probs=53.7
Q ss_pred CCCccCHHHHHHHHHhcCCCCCHHHH--HHHHHHhccCCCCceeHHHHHHHHHhhccCch-hhHHHHHHHHHhh--ccCC
Q psy15709 6 KRGTIEKEKVRTILNTLGHFIDDVEL--ETVIDEINVESGDKISFEEFLQVACHFLRDDD-VLEKELKEAFRLY--DKEE 80 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~~~~~~~~~~--~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~-~~~~~~~~~f~~~--D~~~ 80 (121)
.-..|+..++..+|....+.++.... +.+.+. ....+.++|++|..+..+++-+.. ......+..|-.- +...
T Consensus 157 ~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted--~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d 234 (1267)
T KOG1264|consen 157 RENSISARDLKTILPQVNFKVSSAKFLKEKFTED--GARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPD 234 (1267)
T ss_pred hhhheeHHhhhcccccceEEechHHHHHHHHhHh--hhccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCcc
Confidence 44568889999999877776654333 233322 234678999999999988876421 1111222222221 2223
Q ss_pred CCCcCHHHHHHHHhh
Q psy15709 81 THVSSRDVIVVCHFL 95 (121)
Q Consensus 81 ~g~i~~~el~~~l~~ 95 (121)
--.++..+|+++|..
T Consensus 235 ~~vV~~~ef~rFL~~ 249 (1267)
T KOG1264|consen 235 ASVVYLQEFQRFLIH 249 (1267)
T ss_pred ceEeeHHHHHHHHHh
Confidence 357899999999874
No 216
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=62.67 E-value=13 Score=16.40 Aligned_cols=16 Identities=13% Similarity=-0.186 Sum_probs=11.3
Q ss_pred CHHHHHHHHhhcCCcC
Q psy15709 85 SRDVIVVCHFLRDDDV 100 (121)
Q Consensus 85 ~~~el~~~l~~~~~~~ 100 (121)
+.++|+.+|...|+..
T Consensus 5 s~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPV 20 (38)
T ss_pred CHHHHHHHHHHcCCCC
Confidence 5577888888877543
No 217
>KOG4403|consensus
Probab=61.99 E-value=44 Score=23.94 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=40.5
Q ss_pred CCCCceeHHHHHHHHHhhccC--chhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 41 ESGDKISFEEFLQVACHFLRD--DDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 41 ~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
.|+...+..+|+......+.. ..-..+.++.+-+.+|.|.+|.|+.+|--.+|++
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 344566666777665555442 2456688899999999999999999998888875
No 218
>KOG0871|consensus
Probab=61.97 E-value=32 Score=20.60 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=23.7
Q ss_pred HHHHHhhccCCCCCcCHHHHHHHHhhcCCc
Q psy15709 70 KEAFRLYDKEETHVSSRDVIVVCHFLRDDD 99 (121)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~ 99 (121)
..+=+.++.....+|.++.+.++|..+|..
T Consensus 53 sEAneic~~e~KKTIa~EHV~KALe~LgF~ 82 (156)
T KOG0871|consen 53 SEANEICNKEAKKTIAPEHVIKALENLGFG 82 (156)
T ss_pred HHHHHHHhHHhcccCCHHHHHHHHHHcchH
Confidence 356667778888889999999999888853
No 219
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=61.46 E-value=28 Score=19.72 Aligned_cols=29 Identities=10% Similarity=-0.083 Sum_probs=18.0
Q ss_pred HHHHHHHhhccCCCCCcCHHHHHHHHhhc
Q psy15709 68 ELKEAFRLYDKEETHVSSRDVIVVCHFLR 96 (121)
Q Consensus 68 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 96 (121)
+-....+.++.=..|.|+...+..+|+.+
T Consensus 70 EK~~~~~~i~~yr~g~i~l~~~l~~L~~~ 98 (117)
T PF08349_consen 70 EKQHFLDLIEDYREGKIPLSVPLTLLKHL 98 (117)
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 33444455555567788877777777654
No 220
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=61.17 E-value=12 Score=19.46 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=10.7
Q ss_pred CCccCHHHHHHHHHh
Q psy15709 7 RGTIEKEKVRTILNT 21 (121)
Q Consensus 7 ~g~i~~~el~~~l~~ 21 (121)
+|.+..+||..++..
T Consensus 28 ~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 28 SGKLRGEEINSLLEA 42 (75)
T ss_pred cCcccHHHHHHHHHH
Confidence 577777777777654
No 221
>PTZ00015 histone H4; Provisional
Probab=61.08 E-value=27 Score=19.49 Aligned_cols=77 Identities=14% Similarity=0.118 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhccCCCCcee---HHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHH
Q psy15709 14 KVRTILNTLGHFIDDVELETVIDEINVESGDKIS---FEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIV 90 (121)
Q Consensus 14 el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~---~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~ 90 (121)
..+.+++.--..++..-+..+.... +-..|+ |+++...+..+ ..+-++.+.......+..+|+.+++.
T Consensus 19 r~rk~~r~~i~gI~k~~IrRLarr~---GvkRIS~d~y~e~r~vle~~------l~~I~rdav~~aeHA~RKTVt~~DV~ 89 (102)
T PTZ00015 19 RQKKVLRDNIRGITKGAIRRLARRG---GVKRISGDIYEEVRGVLKAF------LENVVRDSTAYTEYARRKTVTAMDVV 89 (102)
T ss_pred hHHHHHhhcccCCCHHHHHHHHHHc---CCccchHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 3445555433456777777777764 444555 55555555433 23456677777777788899999999
Q ss_pred HHHhhcCCc
Q psy15709 91 VCHFLRDDD 99 (121)
Q Consensus 91 ~~l~~~~~~ 99 (121)
.+++..|..
T Consensus 90 ~AlKr~g~~ 98 (102)
T PTZ00015 90 YALKRQGRT 98 (102)
T ss_pred HHHHhcCCC
Confidence 999987753
No 222
>PLN02222 phosphoinositide phospholipase C 2
Probab=60.81 E-value=34 Score=25.43 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhhccCCCCCcCHHHHHHHHhhc-CC-cCCHHHHHHHHHhh
Q psy15709 65 LEKELKEAFRLYDKEETHVSSRDVIVVCHFLR-DD-DVQEKELKEAFRLY 112 (121)
Q Consensus 65 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~-~~~~~e~~~~~~~~ 112 (121)
+..++..+|..|-. ++.++.++|..+|... +. ..+.+.+..+|+.+
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~ 70 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA 70 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh
Confidence 45689999999964 4799999999999964 43 45788888888875
No 223
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=59.15 E-value=25 Score=19.35 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=20.2
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
.|+.++++++.+-.-..+++++++.+..
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~ 29 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFAT 29 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHH
Confidence 5778888888776666688877765543
No 224
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=58.88 E-value=22 Score=17.71 Aligned_cols=26 Identities=19% Similarity=0.023 Sum_probs=21.4
Q ss_pred cCHHHHHHHHhhcCCcCCHHHHHHHH
Q psy15709 84 SSRDVIVVCHFLRDDDVQEKELKEAF 109 (121)
Q Consensus 84 i~~~el~~~l~~~~~~~~~~e~~~~~ 109 (121)
.+.+++..+.+..|..+|.+++....
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~~ 50 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEAG 50 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45888999999999999999987643
No 225
>KOG1785|consensus
Probab=58.24 E-value=65 Score=22.91 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=44.3
Q ss_pred ccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCC---CcC
Q psy15709 9 TIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETH---VSS 85 (121)
Q Consensus 9 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g---~i~ 85 (121)
.|....|+.+|...--..+.-+...+-..+|...++.|+-=||--+...+ .++..+-.-++.+-.-.-| ++|
T Consensus 190 ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLF-----qPw~tllkNWq~LavtHPGYmAFLT 264 (563)
T KOG1785|consen 190 IVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLF-----QPWKTLLKNWQTLAVTHPGYMAFLT 264 (563)
T ss_pred cccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhh-----ccHHHHHHhhhhhhccCCceeEEee
Confidence 35566666666654322223333444445566677777766665544333 2233444444444455555 467
Q ss_pred HHHHHHHHhh
Q psy15709 86 RDVIVVCHFL 95 (121)
Q Consensus 86 ~~el~~~l~~ 95 (121)
++|++.-|..
T Consensus 265 YDEVk~RLqk 274 (563)
T KOG1785|consen 265 YDEVKARLQK 274 (563)
T ss_pred HHHHHHHHHH
Confidence 7777777655
No 226
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=57.60 E-value=35 Score=21.25 Aligned_cols=47 Identities=17% Similarity=0.361 Sum_probs=21.3
Q ss_pred CCCCccCHHHHHHHHHhcCCCCCHHHHH---HHHHHhccCCCCceeHHHHHHH
Q psy15709 5 GKRGTIEKEKVRTILNTLGHFIDDVELE---TVIDEINVESGDKISFEEFLQV 54 (121)
Q Consensus 5 ~~~g~i~~~el~~~l~~~~~~~~~~~~~---~~~~~~d~~~~g~i~~~ef~~~ 54 (121)
|.+|+++.. +..+...++ .+.+++. .+++.+++.|-|.-++.|.+.+
T Consensus 46 D~~GyL~~~-~~eia~~l~--~~~~~v~~~l~~lQ~leP~GigAr~l~EcLll 95 (194)
T PF04963_consen 46 DDDGYLTES-LEEIAEELG--VSEEEVEKALELLQSLEPAGIGARDLQECLLL 95 (194)
T ss_dssp TTTSTCSS--HHHHHHHCT--S-HHHHHHHHHHHHTTSS--TTTS-TTHHHHH
T ss_pred CCCCccCCC-HHHHHHHhC--CCHHHHHHHHHHHHcCCCCccCcCCHHHHHHH
Confidence 455665422 333334333 4444443 3445556667777777776543
No 227
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=57.35 E-value=23 Score=20.15 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=22.9
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
--+..|++.++..+..++++++++.++..+
T Consensus 82 P~s~~E~~~lI~sl~~r~~ee~l~~iL~~i 111 (118)
T smart00657 82 PETAEEAQLLIPSLEERIDEEELEELLDDL 111 (118)
T ss_pred CCCHHHHHHHhhhhhccCCHHHHHHHHHHH
Confidence 345677788888888788999998887754
No 228
>PLN02228 Phosphoinositide phospholipase C
Probab=57.34 E-value=45 Score=24.77 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhc-CCc-CCHHHHHHHHHhhcc
Q psy15709 63 DVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLR-DDD-VQEKELKEAFRLYDK 114 (121)
Q Consensus 63 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~-~~~~e~~~~~~~~d~ 114 (121)
..+..++..+|..+-. ++.++.++|..+|... +.. .+.+.+..++..+..
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~ 71 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKH 71 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhcc
Confidence 3467889999999964 3589999999999964 433 466778888887754
No 229
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=57.23 E-value=41 Score=20.30 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=32.2
Q ss_pred HHHHHHHHhhc-cCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 67 KELKEAFRLYD-KEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 67 ~~~~~~f~~~D-~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
+.+-.+|+.|- .+.+-..+.+++..-|...| +.++++...+.=
T Consensus 3 dVL~yLfE~y~~~~~~~~~d~~~L~~~L~~aG--F~~~eI~~Al~W 46 (155)
T PF04361_consen 3 DVLMYLFENYIDFESDACPDQDDLTRELSAAG--FEDEEINKALDW 46 (155)
T ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 34567788873 33566789999999999999 888888776653
No 230
>PLN02223 phosphoinositide phospholipase C
Probab=56.88 E-value=78 Score=23.41 Aligned_cols=69 Identities=7% Similarity=-0.131 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHhccCCCCceeHHHHHHHH---HhhccCchhhHHHHHHHHHhhccC--------CCCCcCHHHHHHHHh
Q psy15709 26 IDDVELETVIDEINVESGDKISFEEFLQVA---CHFLRDDDVLEKELKEAFRLYDKE--------ETHVSSRDVIVVCHF 94 (121)
Q Consensus 26 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~---~~~~~~~~~~~~~~~~~f~~~D~~--------~~g~i~~~el~~~l~ 94 (121)
...+++..+|..+. .+.|.++.+.+..++ .....+.....+..+.++..+=.. ..+.++.+.|..+|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 35678899999984 456788888777777 444333223334444444433211 235699999999986
Q ss_pred h
Q psy15709 95 L 95 (121)
Q Consensus 95 ~ 95 (121)
.
T Consensus 92 s 92 (537)
T PLN02223 92 S 92 (537)
T ss_pred C
Confidence 5
No 231
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=56.86 E-value=64 Score=22.45 Aligned_cols=94 Identities=12% Similarity=0.086 Sum_probs=58.1
Q ss_pred CCCCCccCHHHHHHHHHhcCCC---------CC--HHHHHHHHHHhccCCCCceeHHHHHHHHHhhcc-CchhhHHHHHH
Q psy15709 4 SGKRGTIEKEKVRTILNTLGHF---------ID--DVELETVIDEINVESGDKISFEEFLQVACHFLR-DDDVLEKELKE 71 (121)
Q Consensus 4 ~~~~g~i~~~el~~~l~~~~~~---------~~--~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~ 71 (121)
++..+.++.++=..++...|++ .+ .+++..+...+++++...|-+.+=-.-+..+.- .....-.+++.
T Consensus 176 ~~tgr~Lp~eer~~l~ekYgl~~V~~fg~~~~~e~~eei~eIve~L~keGREGVV~Kdpdm~~~plKYtTsyan~~Dik~ 255 (382)
T COG1423 176 KNTGRPLPVEERLELAEKYGLPHVEIFGEFPADEAGEEIYEIVERLNKEGREGVVMKDPDMRVPPLKYTTSYANIEDIKY 255 (382)
T ss_pred cCCCCCCCHHHHHHHHHHcCCCceEEeeeechhHhHHHHHHHHHHHhhcCCcceEecCcccccCcceeecccccHHHHHH
Confidence 4556779999988888877653 11 156778888888776655655544333322211 11234466777
Q ss_pred HHHhhccCCCCCcCHHHHHHHHhhcC
Q psy15709 72 AFRLYDKEETHVSSRDVIVVCHFLRD 97 (121)
Q Consensus 72 ~f~~~D~~~~g~i~~~el~~~l~~~~ 97 (121)
+|+.+-.-+.+++...-++..+....
T Consensus 256 afr~~~elgr~f~~sRiiRe~F~~~E 281 (382)
T COG1423 256 AFRFFFELGRDFFFSRIIREGFQSYE 281 (382)
T ss_pred HHhhhhhcCchHHHHHHHHHHHHHHH
Confidence 77777666777776666666665543
No 232
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=56.62 E-value=21 Score=16.83 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 66 EKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 66 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
...|+..|.. +.+.+..++..+...+| ++..+|...|..
T Consensus 12 ~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 12 LEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 3456666666 55899999999888888 888888887753
No 233
>PF14164 YqzH: YqzH-like protein
Probab=56.61 E-value=21 Score=18.07 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=28.1
Q ss_pred HHHHHHHHhhccC-CCCCcCHHHHHHHHhhcCC---cCCHHHHHHHHH
Q psy15709 67 KELKEAFRLYDKE-ETHVSSRDVIVVCHFLRDD---DVQEKELKEAFR 110 (121)
Q Consensus 67 ~~~~~~f~~~D~~-~~g~i~~~el~~~l~~~~~---~~~~~e~~~~~~ 110 (121)
.-+..+|+.|..| ..-.++..|++.....+.. .-++.++.++++
T Consensus 8 Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~~~~~Dl~eiVe 55 (64)
T PF14164_consen 8 KMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKNEEPDEDLHEIVE 55 (64)
T ss_pred HHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 3467888888766 5667888888877776432 223445555544
No 234
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=56.25 E-value=32 Score=18.71 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=19.6
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCC
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEE 116 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~ 116 (121)
.|.|+.+| +++..+ +|.+|+....+.++.-+
T Consensus 47 ~Glis~~E---A~~rY~--Ls~eEf~~W~~av~rhg 77 (90)
T PF06627_consen 47 GGLISVEE---ACRRYG--LSEEEFESWQRAVDRHG 77 (90)
T ss_dssp CTTS-HHH---HHHCTT--SSHHHHHHHHHHCCT--
T ss_pred cCCCCHHH---HHHHhC--CCHHHHHHHHHHHHHHh
Confidence 57777765 555555 88888888777766544
No 235
>PLN00035 histone H4; Provisional
Probab=55.91 E-value=35 Score=19.12 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=52.7
Q ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCcee---HHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHH
Q psy15709 11 EKEKVRTILNTLGHFIDDVELETVIDEINVESGDKIS---FEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRD 87 (121)
Q Consensus 11 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~---~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ 87 (121)
.....+..++..-..++..-+..+.... +-..|+ |+++...+..+ ...-++.+.......+..+|+.+
T Consensus 15 g~kr~~k~~~d~i~~ipk~~IrRLARr~---GvkRIS~~ay~elr~vle~~------l~~I~~dav~ya~HA~RKTV~~~ 85 (103)
T PLN00035 15 GAKRHRKVLRDNIQGITKPAIRRLARRG---GVKRISGLIYEETRGVLKIF------LENVIRDAVTYTEHARRKTVTAM 85 (103)
T ss_pred cchHHHHHHHhhhccCCHHHHHHHHHHc---CcccchHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCCcCcHH
Confidence 3445556665433346777788877764 445566 45555554433 23456777777777889999999
Q ss_pred HHHHHHhhcCCc
Q psy15709 88 VIVVCHFLRDDD 99 (121)
Q Consensus 88 el~~~l~~~~~~ 99 (121)
++..+++..|.+
T Consensus 86 DV~~Alkr~g~~ 97 (103)
T PLN00035 86 DVVYALKRQGRT 97 (103)
T ss_pred HHHHHHHHcCCc
Confidence 999999988753
No 236
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=55.37 E-value=29 Score=18.31 Aligned_cols=21 Identities=10% Similarity=-0.081 Sum_probs=13.9
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHH
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKEL 105 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~ 105 (121)
.|+....+++++.+| +++.++
T Consensus 8 ~VP~~~wk~F~R~LG--Lsdn~I 28 (77)
T cd08815 8 AVPARRWKEFVRTLG--LREAEI 28 (77)
T ss_pred cCChHHHHHHHHHcC--CcHhHH
Confidence 466777777777777 555554
No 237
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=55.32 E-value=23 Score=16.79 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=21.6
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
+.+++..+...+-..+| ++...|...|.
T Consensus 22 ~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 49 (57)
T PF00046_consen 22 NPYPSKEEREELAKELG--LTERQVKNWFQ 49 (57)
T ss_dssp SSSCHHHHHHHHHHHHT--SSHHHHHHHHH
T ss_pred hcccccccccccccccc--ccccccccCHH
Confidence 56788888888877777 88888877765
No 238
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=55.02 E-value=29 Score=18.14 Aligned_cols=22 Identities=14% Similarity=-0.022 Sum_probs=12.5
Q ss_pred cCHHHHHHHHhhcCCcCCHHHHHH
Q psy15709 84 SSRDVIVVCHFLRDDDVQEKELKE 107 (121)
Q Consensus 84 i~~~el~~~l~~~~~~~~~~e~~~ 107 (121)
++..+.+.+.+.+| +++.+++.
T Consensus 9 v~~~~Wk~laR~LG--ls~~~I~~ 30 (79)
T cd08784 9 VPFDQHKRFFRKLG--LSDNEIKV 30 (79)
T ss_pred CCHHHHHHHHHHcC--CCHHHHHH
Confidence 45566666666666 44444443
No 239
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=54.58 E-value=34 Score=22.07 Aligned_cols=40 Identities=3% Similarity=-0.066 Sum_probs=33.8
Q ss_pred HHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 73 FRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 73 f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
+..+--++.|.+....|...+..+-..++..|+.++-+.+
T Consensus 157 ~~i~vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 157 HDIIVGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred EEEEecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 3444567899999999999999999999999999887765
No 240
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=54.48 E-value=38 Score=19.11 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHH
Q psy15709 64 VLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKE 107 (121)
Q Consensus 64 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~ 107 (121)
.+..++..+...+-.. + .+|.++|++.|...| ++-+++..
T Consensus 67 vsd~evd~~i~~ia~~-n-~ls~~ql~~~L~~~G--~s~~~~r~ 106 (118)
T PF09312_consen 67 VSDEEVDEAIANIAKQ-N-NLSVEQLRQQLEQQG--ISYEEYRE 106 (118)
T ss_dssp --HHHHHHHHHHHHHH-T-T--HHHHHHHCHHCT----HHHHHH
T ss_pred CCHHHHHHHHHHHHHH-c-CCCHHHHHHHHHHcC--CCHHHHHH
Confidence 3445566665555432 2 357788888887777 44444443
No 241
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=54.43 E-value=64 Score=21.69 Aligned_cols=69 Identities=10% Similarity=-0.113 Sum_probs=44.0
Q ss_pred CCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 42 SGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 42 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
+.+.-.|..|...+......-......+-.++..+-.++=..++.+.++.+-..+...++++++...+.
T Consensus 195 g~~s~~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~~~~i~~l~~r~~l~~s~~~a~~~~~ 263 (289)
T cd00893 195 GKKSDDFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFRGSTIKKLKERLCLNMSEKEAINTVM 263 (289)
T ss_pred CCCChhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 445566788888776543322333455666777775555556666666666667777899988876553
No 242
>KOG0039|consensus
Probab=54.37 E-value=69 Score=24.19 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=58.1
Q ss_pred CCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCc------hhhHHHHHHHHHhhccCC
Q psy15709 7 RGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDD------DVLEKELKEAFRLYDKEE 80 (121)
Q Consensus 7 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~------~~~~~~~~~~f~~~D~~~ 80 (121)
+| ++.+++. .--...++.++-++..+|. ++|.++-+++..++....... .........+++..|.+.
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDH 74 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccc
Confidence 45 7777777 2223446678889999987 788899888888776654421 122344456788889999
Q ss_pred CCCcCHHHHHHHHhh
Q psy15709 81 THVSSRDVIVVCHFL 95 (121)
Q Consensus 81 ~g~i~~~el~~~l~~ 95 (121)
.|++...++...+..
T Consensus 75 ~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 75 KGYITNEDLEILLLQ 89 (646)
T ss_pred cceeeecchhHHHHh
Confidence 999999888888764
No 243
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=54.29 E-value=39 Score=19.23 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=32.6
Q ss_pred CCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHH
Q psy15709 6 KRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 53 (121)
++..++..++.++|...|..+....+..++..+.. .+..+.+.
T Consensus 14 g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 14 GNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 45568889999999999988888888888887721 45666664
No 244
>KOG0506|consensus
Probab=54.18 E-value=27 Score=25.32 Aligned_cols=43 Identities=9% Similarity=0.041 Sum_probs=34.8
Q ss_pred HHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 70 KEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
..+|..|-...++.++..-|.++|++.|..-++-.+..+|..+
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~m 131 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEM 131 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHH
Confidence 4578888666679999999999999999887887777777653
No 245
>PLN02859 glutamine-tRNA ligase
Probab=53.69 E-value=1.1e+02 Score=23.98 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 63 DVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 63 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
-.+..++..|++.+...+...++..+|.+.+- .|..+|+++++..+..+
T Consensus 83 IkT~~Ql~AA~kYl~~~~~~~~d~~~Fek~CG-VGV~VT~EqI~~~V~~~ 131 (788)
T PLN02859 83 IKTPAQLEAAFSFFSSTGPESFDLNKFEEACG-VGVVVSPEDIEAAVNEV 131 (788)
T ss_pred CCCHHHHHHHHHHHHhCCCCccCHHHHHHhCC-CCEEECHHHHHHHHHHH
Confidence 34567899999999776666888888877763 57788999998877643
No 246
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=53.48 E-value=29 Score=17.79 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=27.3
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhc----CCcCCHHHHHHHHHhh
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLR----DDDVQEKELKEAFRLY 112 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~----~~~~~~~e~~~~~~~~ 112 (121)
..+..+...++..-.--+-..+++.++..+ |...+++-++.+|..|
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 455666666654433345667777777764 5666777778888764
No 247
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=53.41 E-value=40 Score=19.00 Aligned_cols=30 Identities=13% Similarity=0.022 Sum_probs=26.7
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
.||.+.++++|...|..+.+..+..+++.+
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL 45 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAAL 45 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 799999999999999999988888887765
No 248
>KOG0998|consensus
Probab=52.98 E-value=5.3 Score=30.77 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=50.0
Q ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHh
Q psy15709 31 LETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHF 94 (121)
Q Consensus 31 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 94 (121)
...+|...+.+.+|.|+..++...+... ......++.++...|..+.|.++..++.-.+.
T Consensus 285 ~~~if~q~d~~~dG~I~s~~~~~~f~~~----gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 285 YSKIFSQVDKDNDGSISSNEARNIFLPF----GLSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHhccccCCCcccccccccccccC----CCChhhhhhhhhhcchhccCcccccccchhhh
Confidence 3456888899999999999999988774 45568899999999999999999998765554
No 249
>PF13592 HTH_33: Winged helix-turn helix
Probab=52.50 E-value=28 Score=17.01 Aligned_cols=31 Identities=3% Similarity=-0.214 Sum_probs=17.2
Q ss_pred CCcCHHHHHHHHh-hcCCcCCHHHHHHHHHhh
Q psy15709 82 HVSSRDVIVVCHF-LRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 82 g~i~~~el~~~l~-~~~~~~~~~e~~~~~~~~ 112 (121)
+..+..++..++. .+|..++..-+..+++.+
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~ 34 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRL 34 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHc
Confidence 3445555555555 356666666666655554
No 250
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=52.38 E-value=30 Score=17.28 Aligned_cols=44 Identities=16% Similarity=0.072 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcC-CcCCHHHHHHHHH
Q psy15709 64 VLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRD-DDVQEKELKEAFR 110 (121)
Q Consensus 64 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~e~~~~~~ 110 (121)
-+.++.+.+|+.+ -+|.++..++-.+|-.+. ...+.+|+..+.+
T Consensus 15 Ls~~e~~~~~~~i---~~g~~s~~qiaAfL~al~~kget~~Eiag~~~ 59 (66)
T PF02885_consen 15 LSREEAKAAFDAI---LDGEVSDAQIAAFLMALRMKGETPEEIAGFAK 59 (66)
T ss_dssp --HHHHHHHHHHH---HTTSS-HHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3444555555555 244555555555554431 1145555544433
No 251
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=52.11 E-value=33 Score=17.66 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=21.4
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
.-+.+||...|...|+.+|..-+..-++.+
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL 48 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKEL 48 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHc
Confidence 568899999999999999988887777765
No 252
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=52.04 E-value=19 Score=15.37 Aligned_cols=15 Identities=7% Similarity=-0.097 Sum_probs=10.1
Q ss_pred CCCcCHHHHHHHHhh
Q psy15709 81 THVSSRDVIVVCHFL 95 (121)
Q Consensus 81 ~g~i~~~el~~~l~~ 95 (121)
+|.|+.+++..+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 567777777776654
No 253
>KOG2351|consensus
Probab=51.62 E-value=27 Score=20.29 Aligned_cols=28 Identities=7% Similarity=0.130 Sum_probs=22.5
Q ss_pred CHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 85 SRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 85 ~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
+.+|=+.+..+++.++.+++++.+++.+
T Consensus 100 taEEAkaLvPSL~nkidD~~le~iL~dl 127 (134)
T KOG2351|consen 100 TAEEAKALVPSLENKIDDDELEQILKDL 127 (134)
T ss_pred cHHHHHHhccccccccCHHHHHHHHHHH
Confidence 4666677777888889999999988765
No 254
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=51.19 E-value=26 Score=16.24 Aligned_cols=25 Identities=8% Similarity=-0.057 Sum_probs=17.9
Q ss_pred HHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 87 DVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 87 ~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
+|...+|..+| +++.++..++..+.
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~ 28 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLL 28 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhh
Confidence 56677777888 77888877777764
No 255
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=51.07 E-value=36 Score=17.89 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=27.7
Q ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHhcc-CCCCceeHHHHHHHH
Q psy15709 11 EKEKVRTILNTLGHFIDDVELETVIDEINV-ESGDKISFEEFLQVA 55 (121)
Q Consensus 11 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~ 55 (121)
...++...|. |...+.+.+...+..++. ..-+.++.++|++++
T Consensus 43 ~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 3566666664 677777777777777643 234567777777653
No 256
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=50.86 E-value=30 Score=16.91 Aligned_cols=25 Identities=24% Similarity=0.123 Sum_probs=16.3
Q ss_pred HHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 86 RDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 86 ~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
..|++.+.+.+| +|++++..+++..
T Consensus 20 ~~ev~ywa~~~g--vt~~~L~~AV~~v 44 (57)
T PF12244_consen 20 PYEVRYWAKRFG--VTEEQLREAVRAV 44 (57)
T ss_pred HHHHHHHHHHHC--cCHHHHHHHHHHH
Confidence 445666666666 7777777766654
No 257
>PRK10945 gene expression modulator; Provisional
Probab=50.84 E-value=35 Score=17.68 Aligned_cols=41 Identities=12% Similarity=-0.005 Sum_probs=22.6
Q ss_pred eHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhc
Q psy15709 47 SFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLR 96 (121)
Q Consensus 47 ~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 96 (121)
+-.+|+--+..+ .+.+.++.+|... ...++..|+..+....
T Consensus 7 tk~dyL~~fRrc-----ss~eTLEkvie~~----~~~L~~~E~~~f~~Aa 47 (72)
T PRK10945 7 TKTDYLMRLRRC-----QTIDTLERVIEKN----KYELSDDELAVFYSAA 47 (72)
T ss_pred cHHHHHHHHHhc-----CcHHHHHHHHHHh----hccCCHHHHHHHHHHH
Confidence 445555555444 2335566666544 3356667777776643
No 258
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.51 E-value=18 Score=22.38 Aligned_cols=45 Identities=7% Similarity=-0.032 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHH
Q psy15709 65 LEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAF 109 (121)
Q Consensus 65 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~ 109 (121)
..+.++++|..||+..=-..+.+++.+.+..-++--...-++.++
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi 95 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATI 95 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHH
Confidence 446789999999998888889999988887766433333344433
No 259
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=50.14 E-value=27 Score=16.85 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=8.1
Q ss_pred CCCceeHHHHHHHHHhh
Q psy15709 42 SGDKISFEEFLQVACHF 58 (121)
Q Consensus 42 ~~g~i~~~ef~~~~~~~ 58 (121)
..|.++..||-.-+...
T Consensus 20 a~GrL~~~Ef~~R~~~a 36 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAA 36 (53)
T ss_pred HCCCCCHHHHHHHHHHH
Confidence 34455555555544443
No 260
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=49.99 E-value=41 Score=18.14 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=36.0
Q ss_pred ccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhc
Q psy15709 9 TIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFL 59 (121)
Q Consensus 9 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 59 (121)
.|+-.+|...|+..--..+..+...+=..+|..++++|+-=||-.+...+.
T Consensus 22 IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp EEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred EeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 477888999998754333445567777788999999999888887766553
No 261
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=49.86 E-value=38 Score=18.13 Aligned_cols=13 Identities=0% Similarity=-0.146 Sum_probs=6.9
Q ss_pred CcCHHHHHHHHhh
Q psy15709 83 VSSRDVIVVCHFL 95 (121)
Q Consensus 83 ~i~~~el~~~l~~ 95 (121)
.+|+++|..+|+.
T Consensus 47 ~mtp~eL~~~L~~ 59 (83)
T PF14193_consen 47 KMTPEELAAFLRA 59 (83)
T ss_pred CCCHHHHHHHHHH
Confidence 4555555555543
No 262
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=49.76 E-value=34 Score=17.10 Aligned_cols=19 Identities=0% Similarity=-0.281 Sum_probs=11.7
Q ss_pred CCCcCHHHHHHHHhhcCCc
Q psy15709 81 THVSSRDVIVVCHFLRDDD 99 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~ 99 (121)
++.++...++.++...|+.
T Consensus 42 ~~~~~~~~l~~~lD~~gIt 60 (64)
T PF09494_consen 42 DRKVDPSKLKEWLDSQGIT 60 (64)
T ss_pred cceeCHHHHHHHHHHCCce
Confidence 3456666666666666654
No 263
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=49.51 E-value=50 Score=20.44 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=10.4
Q ss_pred CCCCccCHHHHHHHHHhcCC
Q psy15709 5 GKRGTIEKEKVRTILNTLGH 24 (121)
Q Consensus 5 ~~~g~i~~~el~~~l~~~~~ 24 (121)
||+|++.+-=+..+|.+.|+
T Consensus 127 DGNGRt~Rll~~l~L~~~g~ 146 (186)
T TIGR02613 127 NGNGRHARLATDLLLEQQGY 146 (186)
T ss_pred CCCcHHHHHHHHHHHHHCCC
Confidence 45555555544555555454
No 264
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=49.20 E-value=62 Score=20.03 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=27.6
Q ss_pred CCCceeHHHHHHHHHhhccCchhhHHHHH----HHHHhhccCCCCCcCHHHHHHHHhhcCC
Q psy15709 42 SGDKISFEEFLQVACHFLRDDDVLEKELK----EAFRLYDKEETHVSSRDVIVVCHFLRDD 98 (121)
Q Consensus 42 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~----~~f~~~D~~~~g~i~~~el~~~l~~~~~ 98 (121)
..|.++..+|..-+...+....-+.+.+- ...+.| | +.++++..-++.+|.
T Consensus 33 a~Gklsm~dFsk~I~~YmeeNNISqeKf~niQkk~mERY-----G-fd~~~iE~q~K~~Gi 87 (186)
T PF12983_consen 33 AEGKLSMADFSKKIMEYMEENNISQEKFLNIQKKFMERY-----G-FDPSEIEKQMKSMGI 87 (186)
T ss_pred hcCcccHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh-----C-CCHHHHHHHHHHcCC
Confidence 56888888888877666554323333322 222222 1 345555555555554
No 265
>KOG4286|consensus
Probab=48.99 E-value=37 Score=26.16 Aligned_cols=51 Identities=10% Similarity=0.149 Sum_probs=40.5
Q ss_pred HHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCc
Q psy15709 32 ETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVS 84 (121)
Q Consensus 32 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 84 (121)
.-++..||...+|.|..-+|.-.+..+++ ...+++++.+|.....+++-.+
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck--~~leek~~ylF~~vA~~~sq~~ 523 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCK--AHLEDKYRYLFKQVASSTSQCD 523 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhc--chhHHHHHHHHHHHcCchhhHH
Confidence 66788889888999999988887777777 5667888899999877666543
No 266
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=48.75 E-value=31 Score=16.34 Aligned_cols=31 Identities=16% Similarity=-0.019 Sum_probs=25.3
Q ss_pred CCCcCHHHHHHHHhh-cCCcCCHHHHHHHHHh
Q psy15709 81 THVSSRDVIVVCHFL-RDDDVQEKELKEAFRL 111 (121)
Q Consensus 81 ~g~i~~~el~~~l~~-~~~~~~~~e~~~~~~~ 111 (121)
.+.++...|..-|.. .|..+|+++.+..+..
T Consensus 16 ~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv~~ 47 (48)
T PF07553_consen 16 TMHMSKQGLYDQLTSEYGEGFTEEEAQYAVDH 47 (48)
T ss_pred hccCCHHHHHHHHHhhcccCCCHHHHHHHHHc
Confidence 467999999998875 5888999998887754
No 267
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=48.16 E-value=66 Score=19.99 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=42.5
Q ss_pred HHHHhccCCCC--ceeHHHHHHHHHhhcc-CchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCC
Q psy15709 34 VIDEINVESGD--KISFEEFLQVACHFLR-DDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQ 101 (121)
Q Consensus 34 ~~~~~d~~~~g--~i~~~ef~~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~ 101 (121)
++.++-. ..| .++.+.|+..+....+ +..........+=..+-+...-.||..+|..+|..+|+.-+
T Consensus 24 ~W~eiv~-~~~i~av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP~~t 93 (181)
T PF11422_consen 24 IWEEIVQ-NHGIFAVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGPEET 93 (181)
T ss_dssp HHHHHHS-SSS--EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSSGGG
T ss_pred HHHHHhc-CCCcceeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCCchh
Confidence 3444433 445 8999999998777663 22333344444444455666789999999999999997543
No 268
>KOG0869|consensus
Probab=48.07 E-value=62 Score=19.67 Aligned_cols=30 Identities=13% Similarity=0.022 Sum_probs=24.4
Q ss_pred HHHHHhhccCCCCCcCHHHHHHHHhhcCCc
Q psy15709 70 KEAFRLYDKEETHVSSRDVIVVCHFLRDDD 99 (121)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~ 99 (121)
-+|=..+......+|+.+++..+|..+|..
T Consensus 73 ~EAsekC~~EkRKTIngdDllwAm~tLGFe 102 (168)
T KOG0869|consen 73 GEASEKCQREKRKTINGDDLLWAMSTLGFE 102 (168)
T ss_pred hHHHHHHHHHhcCcccHHHHHHHHHHcCcH
Confidence 355566777788999999999999999953
No 269
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=47.88 E-value=45 Score=19.84 Aligned_cols=16 Identities=13% Similarity=-0.020 Sum_probs=10.8
Q ss_pred cCCCCCcCHHHHHHHH
Q psy15709 78 KEETHVSSRDVIVVCH 93 (121)
Q Consensus 78 ~~~~g~i~~~el~~~l 93 (121)
.+.+|..+...|++++
T Consensus 130 ~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 130 NPQTGQFDRAKLKQFL 145 (145)
T ss_pred CcccCCcCHHHHHhhC
Confidence 3367778877777653
No 270
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=47.72 E-value=45 Score=18.02 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=45.7
Q ss_pred CCCccCHHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhcc-CchhhHHHHHHHHHhhccCCCCC
Q psy15709 6 KRGTIEKEKVRTILNTLG-HFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR-DDDVLEKELKEAFRLYDKEETHV 83 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~ 83 (121)
-+|.++..|...+-+.+. ...+......+...+........++.+|...+....+ .......-+..++...-. +|.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--DG~ 89 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--DGE 89 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cCC
Confidence 378899888866544332 2333333444444443222223778888888776532 222334445556666543 677
Q ss_pred cCHHHHH
Q psy15709 84 SSRDVIV 90 (121)
Q Consensus 84 i~~~el~ 90 (121)
++..|-.
T Consensus 90 ~~~~E~~ 96 (106)
T cd07316 90 LSEAERE 96 (106)
T ss_pred CCHHHHH
Confidence 8887743
No 271
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=47.62 E-value=41 Score=23.01 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=19.9
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhcc
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~ 114 (121)
+|.||++|=...++....+.+++.++.+++.++.
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg~ 333 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLGI 333 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhCC
Confidence 5667776666666654444555556666655543
No 272
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=47.07 E-value=59 Score=19.10 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=32.0
Q ss_pred CCCceeHHHHHHHHHhhcc------CchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 42 SGDKISFEEFLQVACHFLR------DDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 42 ~~g~i~~~ef~~~~~~~~~------~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
.+|.|+..+|+..+..... ....+...++.+|+.+= |....+..|+..+..-
T Consensus 41 rng~IsVreFVr~La~S~~yr~~f~~~~~~~R~iEl~~khlL--GR~p~~~~Ei~~~~~i 98 (131)
T PF00427_consen 41 RNGQISVREFVRALAKSELYRKRFFEPNSNYRFIELAFKHLL--GRAPYNQAEISAYSQI 98 (131)
T ss_dssp HTTSS-HHHHHHHHHTSHHHHHHHTTTS-HHHHHHHHHHHHC--SS--SSHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHcCHHHHHHHcccccchHHHHHHHHHHh--CCCCCCHHHHHHHHHH
Confidence 3578999999998876533 22345566777777763 5556667777666654
No 273
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=47.01 E-value=17 Score=22.70 Aligned_cols=34 Identities=6% Similarity=0.014 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCC
Q psy15709 65 LEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDD 98 (121)
Q Consensus 65 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~ 98 (121)
..+.++.+|..||+..=-..+.+++.+++..-++
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~I 85 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAGI 85 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchh
Confidence 4467899999999988778899999998886664
No 274
>KOG4070|consensus
Probab=46.70 E-value=40 Score=20.38 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=34.9
Q ss_pred cCHHHHHHHHHhcC----CCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhcc---CchhhHHHHHHHHHhh
Q psy15709 10 IEKEKVRTILNTLG----HFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR---DDDVLEKELKEAFRLY 76 (121)
Q Consensus 10 i~~~el~~~l~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~~~f~~~ 76 (121)
++-..+.+++...+ -.++..++.-.|..+-...-+.++|++|...+..+.. ...+.++.+..+.+.+
T Consensus 34 m~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 34 MNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRFKGKSKEEALDAICQLL 107 (180)
T ss_pred cccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 33344444544433 2234444444554544334567999999777766642 1123445555555554
No 275
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=45.95 E-value=39 Score=18.39 Aligned_cols=22 Identities=18% Similarity=0.060 Sum_probs=7.8
Q ss_pred HHHHhhcCCcCCHHHHHHHHHh
Q psy15709 90 VVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 90 ~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
+.+|+.-|.+++.+++..++..
T Consensus 15 k~lLk~rGi~v~~~~L~~f~~~ 36 (90)
T PF02337_consen 15 KHLLKERGIRVKKKDLINFLSF 36 (90)
T ss_dssp HHHHHCCT----HHHHHHHHHH
T ss_pred HHHHHHcCeeecHHHHHHHHHH
Confidence 3333444444555444444443
No 276
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=45.64 E-value=65 Score=23.70 Aligned_cols=48 Identities=6% Similarity=-0.020 Sum_probs=36.0
Q ss_pred HHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCC
Q psy15709 69 LKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEE 116 (121)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~ 116 (121)
+.......+..|.|.++.+|..++|..+...-..-+++++++++..|.
T Consensus 457 ~~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~nd 504 (548)
T PF02459_consen 457 SRDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALND 504 (548)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcch
Confidence 345556667888889999999999998876555667788888775543
No 277
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=45.64 E-value=31 Score=15.44 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=13.6
Q ss_pred HHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 90 VVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 90 ~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
.+.++++-+.++.+.+...+...+
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 344555566666666666665543
No 278
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=45.50 E-value=98 Score=21.24 Aligned_cols=74 Identities=14% Similarity=-0.029 Sum_probs=42.7
Q ss_pred HhcCCCCCHHHHHHHHHHhc--cCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 20 NTLGHFIDDVELETVIDEIN--VESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
..+.+.+..++++.++.++. .|....+-=++|.+....+.. .....-+.-+-+.+-..=+|++=..|+.+-++.
T Consensus 26 ~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~--e~r~~FidFLerScTaEFSGflLYKEl~rrlk~ 101 (337)
T TIGR02029 26 ANLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDG--ELRQAFIEFLERSCTSEFSGFLLYKELSRRLKN 101 (337)
T ss_pred HhcCCchhHHHHHHHHHHHHhCccccccccChhhhcchhhCCH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC
Confidence 45677777888999998884 344445666677665443322 112222222333444455788877777666643
No 279
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=45.24 E-value=41 Score=17.35 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=6.0
Q ss_pred HHHHHHHHHhh
Q psy15709 66 EKELKEAFRLY 76 (121)
Q Consensus 66 ~~~~~~~f~~~ 76 (121)
.+.++.+|+..
T Consensus 16 ~eTLEkv~e~~ 26 (71)
T PRK10391 16 LESLEKLFDHL 26 (71)
T ss_pred HHHHHHHHHHh
Confidence 34556665555
No 280
>KOG4301|consensus
Probab=45.19 E-value=52 Score=22.81 Aligned_cols=60 Identities=8% Similarity=0.002 Sum_probs=38.3
Q ss_pred HHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 33 TVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 33 ~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
.+...+|..+.|.++.-.-...+..... +...++++.+|.... +.+|.+..-.+-+++++
T Consensus 114 flLaA~ds~~~g~~~vfavkialatlc~--gk~~dklryIfs~is-ds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATLCG--GKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhhcc--chHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH
Confidence 3555667777777766555555555544 456688888998884 45676666566566654
No 281
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.76 E-value=38 Score=20.24 Aligned_cols=46 Identities=4% Similarity=-0.012 Sum_probs=38.2
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
.....+|+.+....+..++.-.+-.+|++.+.+++......+++.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~ 125 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAA 125 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4567889999665565899999999999988889999998888865
No 282
>PLN02223 phosphoinositide phospholipase C
Probab=44.69 E-value=91 Score=23.08 Aligned_cols=48 Identities=6% Similarity=-0.148 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhhccCCCCCcCHHHHHHHH---hhc-C-CcCCHHHHHHHHHhh
Q psy15709 64 VLEKELKEAFRLYDKEETHVSSRDVIVVCH---FLR-D-DDVQEKELKEAFRLY 112 (121)
Q Consensus 64 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l---~~~-~-~~~~~~e~~~~~~~~ 112 (121)
.+...++.+|..|- .+.|.++.+.+.++| .+. | ...+.++.+.++..+
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~ 65 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAEL 65 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 45688999999994 678899999999999 543 3 346777777777654
No 283
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=44.63 E-value=47 Score=17.27 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHhh
Q psy15709 100 VQEKELKEAFRLY 112 (121)
Q Consensus 100 ~~~~e~~~~~~~~ 112 (121)
+|++.+.++|..+
T Consensus 13 vsd~qi~elFq~l 25 (82)
T PF11212_consen 13 VSDEQINELFQAL 25 (82)
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444433
No 284
>COG3860 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.42 E-value=51 Score=17.68 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=15.8
Q ss_pred HHHHhh--cCCcCCHHHHHHHHHhhc
Q psy15709 90 VVCHFL--RDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 90 ~~~l~~--~~~~~~~~e~~~~~~~~d 113 (121)
+.+++. .+...|++|+..+++++=
T Consensus 35 k~ll~~fe~~r~YsEkeVN~ii~ryh 60 (89)
T COG3860 35 KHLLKNFENERQYSEKEVNLIIKRYH 60 (89)
T ss_pred HHHHhhcccccccCHHHHHHHHHHhC
Confidence 344443 356678888888887753
No 285
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=44.04 E-value=62 Score=18.51 Aligned_cols=47 Identities=9% Similarity=-0.026 Sum_probs=35.3
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCC
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMS 119 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~ 119 (121)
+-++.+....-..+...|+++.+..+++ .++|+..+|+..-..+.|.
T Consensus 57 EIlelA~n~ak~~k~krItp~hi~lAi~------nD~EL~~L~~~vtI~~ggv 103 (115)
T cd00074 57 EVLELAGNAARDNKKKRITPRHLQLAVR------NDEELNKLLKGVTIASGGV 103 (115)
T ss_pred HHHHHHHHHHHHcCCCeEcHHHHHHHHh------ccHHHHHHHcCCcccCCcc
Confidence 4566777777677788999999988874 4778998988765555554
No 286
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=44.04 E-value=49 Score=17.33 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhccCCC
Q psy15709 12 KEKVRTILNTLGHFIDDVELETVIDEINVESG 43 (121)
Q Consensus 12 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 43 (121)
...+..++.++|++-+.+.|..++.......+
T Consensus 5 ~h~l~~LF~QLGL~~~~~~I~~FI~~H~L~~~ 36 (74)
T PF10982_consen 5 QHTLSNLFAQLGLDSSDEAIEAFIETHQLPAD 36 (74)
T ss_dssp -THHHHHHHHHTS---HHHHHHHHHHS---TT
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHhCCCCCC
Confidence 45677888899999999999988888765443
No 287
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=43.37 E-value=71 Score=18.99 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=23.9
Q ss_pred CCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 80 ETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 80 ~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
.....|.+|+...|++.|+.+|..-+-..++++.
T Consensus 13 ~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 13 EEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 3446778888888877777777777766666543
No 288
>TIGR02436 conserved hypothetical protein TIGR02436. This family consists of a few small, well-conserved proteins found so far in Bacteroides thetaiotaomicron VPI-5482, Nostoc sp. PCC 7120, Clostridium tetani E88, Chlorobium tepidum TLS, and Prevotella ruminicola 23. The function is unknown.
Probab=43.35 E-value=61 Score=18.22 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=29.4
Q ss_pred CCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 42 SGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 42 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
+.|.-+..+|+.++.-...........+..+++ .|+|+.+++..+..+
T Consensus 46 g~~r~s~~df~~fl~ia~gs~~E~~~~L~la~~------~~~l~~~~~~~l~~e 93 (111)
T TIGR02436 46 AQAAESTADFIHKLSIALKEGSETEYWIRLLIQ------TELIPENRYESIKGD 93 (111)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCCHHHHHHHHHH
Confidence 456778999999887665533233333333332 478887777666654
No 289
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=43.01 E-value=94 Score=20.32 Aligned_cols=49 Identities=10% Similarity=0.225 Sum_probs=34.8
Q ss_pred CCCccCHHHHHHHHHhcCCC------CCHHHHHHHHHHhccCCC-CceeHHHHHHH
Q psy15709 6 KRGTIEKEKVRTILNTLGHF------IDDVELETVIDEINVESG-DKISFEEFLQV 54 (121)
Q Consensus 6 ~~g~i~~~el~~~l~~~~~~------~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~ 54 (121)
+.|.+....+..++..++.. |..+.-..++..+..+-+ +.|++.|-+++
T Consensus 167 ~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~L 222 (237)
T TIGR03849 167 EKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISL 222 (237)
T ss_pred CCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHH
Confidence 44677777778888776642 556666777888887777 77888877764
No 290
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=42.95 E-value=32 Score=14.84 Aligned_cols=18 Identities=6% Similarity=-0.311 Sum_probs=12.1
Q ss_pred CcCHHHHHHHHhhcCCcC
Q psy15709 83 VSSRDVIVVCHFLRDDDV 100 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~ 100 (121)
.++..|++.+|+..|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 356778888888777543
No 291
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=42.89 E-value=28 Score=18.05 Aligned_cols=30 Identities=3% Similarity=-0.196 Sum_probs=16.2
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhc
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLR 96 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 96 (121)
...+.+...-+...+++|+.+++.+++.++
T Consensus 39 Av~Ra~~~a~~e~~~~~le~e~LEki~pqL 68 (72)
T PF09415_consen 39 AVARAAEQAEAEGDEGFLEVEHLEKILPQL 68 (72)
T ss_dssp HHHHHHHHHHHTT-SSEE-HHHHHHHCHCH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 334444434444333459999999887643
No 292
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=42.77 E-value=43 Score=16.30 Aligned_cols=24 Identities=8% Similarity=-0.080 Sum_probs=15.8
Q ss_pred HHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 88 VIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 88 el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
|-+..|..-|+.++.+.++.++..
T Consensus 16 Eak~~L~k~GIeLsme~~qP~m~L 39 (56)
T PF10815_consen 16 EAKEELDKKGIELSMEMLQPLMQL 39 (56)
T ss_pred HHHHHHHHcCccCCHHHHHHHHHH
Confidence 345666667777777777666543
No 293
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=42.58 E-value=12 Score=18.97 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=15.0
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
.|.++..-+.++|+.+-..-..+++..|+.
T Consensus 47 rgrvskavlvkmlrkly~~tk~e~vkrmlh 76 (79)
T PF09061_consen 47 RGRVSKAVLVKMLRKLYEATKNEEVKRMLH 76 (79)
T ss_dssp HS-EEHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 355666666666666544344555555544
No 294
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=42.57 E-value=99 Score=20.46 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=50.4
Q ss_pred HHHHHHHHHhc--cCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcC-CcCCHH
Q psy15709 29 VELETVIDEIN--VESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRD-DDVQEK 103 (121)
Q Consensus 29 ~~~~~~~~~~d--~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~ 103 (121)
..+.++++.|= ...+..+....|+.+...+........+.+..|...|=+.+. .++.+|=+++++-+. .++|.+
T Consensus 180 ~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp-~ls~~Er~~lC~~ldc~KLS~E 256 (258)
T PF03000_consen 180 VKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP-GLSEEERKRLCRLLDCQKLSPE 256 (258)
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc-cCCHHHHHHHHhhCCcccCCcc
Confidence 44555666552 235667999999999887766555566777777777766555 588888888888764 455543
No 295
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=42.32 E-value=67 Score=18.42 Aligned_cols=31 Identities=3% Similarity=0.007 Sum_probs=16.9
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
.|.++.+++..-+..-+..++.+++..++..
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~ 56 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNA 56 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4556666665555444555666665555443
No 296
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=42.29 E-value=47 Score=16.60 Aligned_cols=14 Identities=14% Similarity=-0.237 Sum_probs=7.1
Q ss_pred cCHHHHHHHHhhcC
Q psy15709 84 SSRDVIVVCHFLRD 97 (121)
Q Consensus 84 i~~~el~~~l~~~~ 97 (121)
++.+++..+|..+|
T Consensus 19 i~~~ei~~~L~~lg 32 (71)
T smart00874 19 LSAEEIEEILKRLG 32 (71)
T ss_pred CCHHHHHHHHHHCC
Confidence 44455555555544
No 297
>PF10056 DUF2293: Uncharacterized conserved protein (DUF2293); InterPro: IPR018744 Proteins in this entry are found the bacteria and fungi, they have no known function.
Probab=42.15 E-value=35 Score=18.39 Aligned_cols=28 Identities=0% Similarity=-0.231 Sum_probs=18.3
Q ss_pred HhhcCCcCCHHHHHHHHHhhccCCCCCC
Q psy15709 93 HFLRDDDVQEKELKEAFRLYDKEEPMSI 120 (121)
Q Consensus 93 l~~~~~~~~~~e~~~~~~~~d~~~dg~i 120 (121)
++.+-+.++..+.+.++..+-..++|+|
T Consensus 3 l~~lfP~~P~~d~~~I~~hA~~~gs~rv 30 (86)
T PF10056_consen 3 LRRLFPRCPAEDAEAILAHAFPKGSGRV 30 (86)
T ss_pred HHHHccCCCHHHHHHHHHHHHhcCCCCC
Confidence 4555666777777777777666666643
No 298
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=41.91 E-value=47 Score=16.50 Aligned_cols=29 Identities=7% Similarity=-0.001 Sum_probs=14.0
Q ss_pred HHHHHHHHHhh--ccCCCCCcCHHHHHHHHhh
Q psy15709 66 EKELKEAFRLY--DKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 66 ~~~~~~~f~~~--D~~~~g~i~~~el~~~l~~ 95 (121)
-+.+...++.+ ++ +...++.++++.+|..
T Consensus 14 l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 14 LDRIHSMLKMFPKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp HHHHHHHHHHH-GGG---TT--HHHHHHHHHH
T ss_pred HHHHHHHHHhccCCC-CCCCCCHHHHHHHHHH
Confidence 34555555555 33 3334666777666654
No 299
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=41.84 E-value=1.2e+02 Score=21.04 Aligned_cols=74 Identities=12% Similarity=-0.068 Sum_probs=44.2
Q ss_pred HhcCCCCCHHHHHHHHHHhc--cCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 20 NTLGHFIDDVELETVIDEIN--VESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
..+.+.+..++++.++.++. .|....+-=++|.+.+..+.. .....-+.-+-+.+-..=+|++=..|+.+-++.
T Consensus 32 ~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~--e~r~~FidFLerScTaEFSGflLYKEl~rrlk~ 107 (351)
T CHL00185 32 ANYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDE--KTKSLFVEFLERSCTAEFSGFLLYKELSRKLKD 107 (351)
T ss_pred HhcCCchhHHHHHHHHHHHHhCccccccccChhhhhchhhCCH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcc
Confidence 45667777888999999884 444455666777765544422 112222222333444555788888777776653
No 300
>PHA02142 putative RNA ligase
Probab=41.63 E-value=12 Score=25.89 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHhhccCCCCCcCHHHHHHHHhhcCCcCCHH-----------HHHHHHHhhc
Q psy15709 72 AFRLYDKEETHVSSRDVIVVCHFLRDDDVQEK-----------ELKEAFRLYD 113 (121)
Q Consensus 72 ~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~-----------e~~~~~~~~d 113 (121)
+|..++.+..++++.+++..++.++|...-+. .+++++..++
T Consensus 274 vF~v~~i~~~~yl~~~e~~~~~~~~gl~~VPvL~~~~~~~~~~s~eE~L~~A~ 326 (366)
T PHA02142 274 AFRAWFIDEQRFATDEEFQDLCRTLGMEIVPQLGYSYPFQEFTNVKEMLAAAD 326 (366)
T ss_pred EEEEEEeccceeCCHHHHHHHHHHcCCceeeeecccccccccCCHHHHHhhcC
Confidence 45666667888999999999999988643111 4677777665
No 301
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=41.31 E-value=75 Score=18.68 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=26.0
Q ss_pred CCCCcCHHHHHHHHhhcC---------CcCCHHHHHHHHHhhccCCC
Q psy15709 80 ETHVSSRDVIVVCHFLRD---------DDVQEKELKEAFRLYDKEEP 117 (121)
Q Consensus 80 ~~g~i~~~el~~~l~~~~---------~~~~~~e~~~~~~~~d~~~d 117 (121)
|+..||.+||.+.+..-. +.+.+++++.+.+.+.....
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~ 126 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPK 126 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccc
Confidence 556788888888877532 24678888888777765443
No 302
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=40.88 E-value=69 Score=18.14 Aligned_cols=31 Identities=13% Similarity=0.041 Sum_probs=27.0
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
-|+.+.++.++...|..+.+..++.++..+.
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLe 46 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALE 46 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc
Confidence 8999999999999999998888888877653
No 303
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=40.15 E-value=68 Score=17.89 Aligned_cols=32 Identities=9% Similarity=-0.225 Sum_probs=24.9
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
.-.+|.+++.+++...|.+.....+..+++.+
T Consensus 15 ~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L 46 (103)
T cd05831 15 GIEITADNINALLKAAGVNVEPYWPGLFAKAL 46 (103)
T ss_pred CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 34699999999999999887777776666554
No 304
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=40.09 E-value=33 Score=17.51 Aligned_cols=35 Identities=6% Similarity=-0.069 Sum_probs=22.3
Q ss_pred cCCCCCcCHHHHHHHHhh-cCCcCCHHHHHHHHHhh
Q psy15709 78 KEETHVSSRDVIVVCHFL-RDDDVQEKELKEAFRLY 112 (121)
Q Consensus 78 ~~~~g~i~~~el~~~l~~-~~~~~~~~e~~~~~~~~ 112 (121)
-.|...++..++.+++.. .|.+++..++..+.+.+
T Consensus 8 ~~G~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l 43 (76)
T PF08479_consen 8 FEGNTLLPEEELQAILAPYIGRCLTLADLQQLADAL 43 (76)
T ss_dssp EES-TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHH
T ss_pred EECCCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Confidence 345556777777777775 47777887777766553
No 305
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=40.03 E-value=33 Score=16.43 Aligned_cols=23 Identities=9% Similarity=-0.198 Sum_probs=13.8
Q ss_pred HHHhhccCCCCCcCHHHHHHHHh
Q psy15709 72 AFRLYDKEETHVSSRDVIVVCHF 94 (121)
Q Consensus 72 ~f~~~D~~~~g~i~~~el~~~l~ 94 (121)
+|..+...|++.+|..|+...+.
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTST
T ss_pred cHHHHHHcCCCCCCHHHHHHHcC
Confidence 45555555556777777766665
No 306
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=39.96 E-value=89 Score=19.14 Aligned_cols=62 Identities=8% Similarity=0.065 Sum_probs=33.9
Q ss_pred eeHHHHHHHHHhhccCchhhHHHH---HHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 46 ISFEEFLQVACHFLRDDDVLEKEL---KEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 46 i~~~ef~~~~~~~~~~~~~~~~~~---~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
++++++........-........+ .-++...- .-.++.++|..-|..+| ++++.++.+.+.|
T Consensus 22 ~~~~~~~kl~~~~~~~~~~lk~~va~l~fiL~~A~---k~n~~~~~l~~eL~~lg--lp~e~~~~l~~~~ 86 (174)
T cd04752 22 IDYEKVLKLTADAKFESGDVKASIAVLSFILSSAA---KYNVDGESLSSELQQLG--LPKEHATSLCRSY 86 (174)
T ss_pred CCHHHHHHHHHHhCCCHhhHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 666666666554433221222222 22232222 22388888888888887 7777776665544
No 307
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=39.88 E-value=99 Score=20.01 Aligned_cols=36 Identities=6% Similarity=0.150 Sum_probs=18.6
Q ss_pred hcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHH
Q psy15709 21 TLGHFIDDVELETVIDEINVESGDKISFEEFLQVAC 56 (121)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 56 (121)
.+++.+++++++.+...+..=.+-.+++.+|..-+.
T Consensus 187 ~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~ 222 (225)
T PF06207_consen 187 NYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLN 222 (225)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345556666665555554433333455555555443
No 308
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=39.77 E-value=73 Score=19.75 Aligned_cols=89 Identities=9% Similarity=0.108 Sum_probs=45.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc-----cCC--CCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHH
Q psy15709 15 VRTILNTLGHFIDDVELETVIDEIN-----VES--GDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRD 87 (121)
Q Consensus 15 l~~~l~~~~~~~~~~~~~~~~~~~d-----~~~--~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ 87 (121)
|+.++..+.++...+.+..++..+. .+. ....+.+.-..++..+ +-.-=..+.++-...+|.+
T Consensus 89 LR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~sl----------imLnTdlHn~~~~~kmt~~ 158 (190)
T PF01369_consen 89 LRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSL----------IMLNTDLHNPNIKKKMTKE 158 (190)
T ss_dssp HHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHH----------HHHHHHHH-TTSSSS--HH
T ss_pred HHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHH----------HHHhHHHHhhccccCCcHH
Confidence 3444444455666677777777663 222 2345544432222221 1111122333334569999
Q ss_pred HHHHHHhhc--CCcCCHHHHHHHHHhhc
Q psy15709 88 VIVVCHFLR--DDDVQEKELKEAFRLYD 113 (121)
Q Consensus 88 el~~~l~~~--~~~~~~~e~~~~~~~~d 113 (121)
+|.+.++.. +..++++.+..+...+-
T Consensus 159 ~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 186 (190)
T PF01369_consen 159 DFIKNTRGIDDGKDIPEEFLESIYDSIK 186 (190)
T ss_dssp HHHHHTTTTBTTBS--HHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCCCCHHHHHHHHHHHH
Confidence 999999964 56789999988887653
No 309
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=39.58 E-value=1.2e+02 Score=20.66 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=41.0
Q ss_pred ceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 45 KISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 45 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
.-.|..|...+......-+.....+-.+|..+=..+--.++.+.+..+-..+...++++++...+.
T Consensus 220 s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~~~~i~~l~~rf~l~~se~~a~~~~~ 285 (311)
T cd05167 220 ATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFRGDTIKNLRQRFAPEKSEREAAEFML 285 (311)
T ss_pred chhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhhHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 456888888776643321233355666666664333344566667776667778899988866554
No 310
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=39.45 E-value=41 Score=16.79 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=20.6
Q ss_pred HHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHH
Q psy15709 70 KEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELK 106 (121)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~ 106 (121)
..||+.| .+..|.|+..++...| | +++..+.
T Consensus 10 dkA~e~y-~~~~g~i~lkdIA~~L---g--vs~~tIr 40 (60)
T PF10668_consen 10 DKAFEIY-KESNGKIKLKDIAEKL---G--VSESTIR 40 (60)
T ss_pred HHHHHHH-HHhCCCccHHHHHHHH---C--CCHHHHH
Confidence 4677777 5578889888876665 4 4554443
No 311
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=39.37 E-value=77 Score=18.27 Aligned_cols=44 Identities=7% Similarity=0.200 Sum_probs=25.9
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhh--cCCcCCHHHHHHHHH
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFL--RDDDVQEKELKEAFR 110 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~--~~~~~~~~e~~~~~~ 110 (121)
......|..+.+.+.++|+..-+.....- .+..+..+.+.+.++
T Consensus 21 ~ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VIe 66 (130)
T COG5611 21 TKAEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVIE 66 (130)
T ss_pred HHHHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34556666666666777766655544442 345566666666555
No 312
>KOG4286|consensus
Probab=39.13 E-value=1.9e+02 Score=22.70 Aligned_cols=90 Identities=9% Similarity=0.051 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHhccC-CCCceeHHHHHHHHHhhccC-----------chhhHHHHHHHHHhhccCCCCCcCHHHHHHHH
Q psy15709 26 IDDVELETVIDEINVE-SGDKISFEEFLQVACHFLRD-----------DDVLEKELKEAFRLYDKEETHVSSRDVIVVCH 93 (121)
Q Consensus 26 ~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~~~~~~~-----------~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l 93 (121)
++-..+..+|.+++.. +..-++....+.++...... +.--...+.-....||+..+|.|..-+|+..+
T Consensus 417 v~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~ 496 (966)
T KOG4286|consen 417 LSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGI 496 (966)
T ss_pred ccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhH
Confidence 3345567788887754 34446666666665544320 01112345667889999999999999999988
Q ss_pred hhcCCcCCHHHHHHHHHhhccC
Q psy15709 94 FLRDDDVQEKELKEAFRLYDKE 115 (121)
Q Consensus 94 ~~~~~~~~~~e~~~~~~~~d~~ 115 (121)
-.+..-..++.+..+|+.....
T Consensus 497 i~lck~~leek~~ylF~~vA~~ 518 (966)
T KOG4286|consen 497 ISLCKAHLEDKYRYLFKQVASS 518 (966)
T ss_pred HHHhcchhHHHHHHHHHHHcCc
Confidence 8877666777777898876543
No 313
>PHA02105 hypothetical protein
Probab=38.99 E-value=53 Score=16.26 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=32.6
Q ss_pred ccCHHHHHHHHHhcC---CCCCHHHHHHHHHHhccCC--CCceeHHHHHHHHHhh
Q psy15709 9 TIEKEKVRTILNTLG---HFIDDVELETVIDEINVES--GDKISFEEFLQVACHF 58 (121)
Q Consensus 9 ~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~~~--~g~i~~~ef~~~~~~~ 58 (121)
.++.++|..++..-. .+...+.+.++-..+..-. --.++|++|..++.-+
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~i 58 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFI 58 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccccc
Confidence 467888888887543 4555666666666665332 2357899998876544
No 314
>COG3820 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.92 E-value=30 Score=21.49 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=34.7
Q ss_pred CceeHHHHHHHHHhhccCc-hhhHHHHHHHHHhhccCCCCCcCHHHHHHHHh
Q psy15709 44 DKISFEEFLQVACHFLRDD-DVLEKELKEAFRLYDKEETHVSSRDVIVVCHF 94 (121)
Q Consensus 44 g~i~~~ef~~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 94 (121)
..++|++...+|.....+. .-..-+.....+-+|+=.+|.++++|+.++-.
T Consensus 19 TsLsF~QIA~FCglHplEvk~iADGE~aq~IkGldPI~~GQLtreEi~rae~ 70 (230)
T COG3820 19 TSLSFDQIADFCGLHPLEVKGIADGEVAQGIKGLDPIANGQLTREEIARAEK 70 (230)
T ss_pred ccccHHHHHHHhCcCcceeeeeccchhhccccCCCccccCcccHHHHHhhhc
Confidence 4688998888876554321 11223445566778888999999999877654
No 315
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=38.89 E-value=78 Score=20.27 Aligned_cols=37 Identities=11% Similarity=-0.069 Sum_probs=31.3
Q ss_pred ccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 77 DKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 77 D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
-.|..|....+++...++.-+..++.+.+..+.+.-|
T Consensus 53 ~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~ 89 (211)
T COG1859 53 RLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDD 89 (211)
T ss_pred eeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCC
Confidence 4678899999999999999888899999888877544
No 316
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=38.66 E-value=96 Score=19.19 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=29.4
Q ss_pred hccCCCCCcCHHHHHHHHhhc--CCcCCHHHHHHHHHhhc
Q psy15709 76 YDKEETHVSSRDVIVVCHFLR--DDDVQEKELKEAFRLYD 113 (121)
Q Consensus 76 ~D~~~~g~i~~~el~~~l~~~--~~~~~~~e~~~~~~~~d 113 (121)
+.++....+|.++|.+.++.. +..++++.+..+....-
T Consensus 142 Hn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 181 (185)
T cd00171 142 HNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIK 181 (185)
T ss_pred cCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 345556689999999999875 44789999999887754
No 317
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=37.93 E-value=58 Score=26.18 Aligned_cols=39 Identities=15% Similarity=0.056 Sum_probs=33.8
Q ss_pred ccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccC
Q psy15709 77 DKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKE 115 (121)
Q Consensus 77 D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~ 115 (121)
|.=-.|+||...+..++.++|...+.+++..+|..+..+
T Consensus 1131 DvVMRGfiTsn~Il~vle~iG~~h~a~Dl~~iF~lmNl~ 1169 (1301)
T PF05788_consen 1131 DVVMRGFITSNTILNVLEKIGFGHSASDLATIFTLMNLE 1169 (1301)
T ss_pred hhhhhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHhccc
Confidence 444689999999999999999999999999998877654
No 318
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=37.91 E-value=44 Score=15.11 Aligned_cols=18 Identities=6% Similarity=-0.081 Sum_probs=11.9
Q ss_pred CCCCcCHHHHHHHHhhcC
Q psy15709 80 ETHVSSRDVIVVCHFLRD 97 (121)
Q Consensus 80 ~~g~i~~~el~~~l~~~~ 97 (121)
=+|..+.++|..+++.+.
T Consensus 14 fSgHad~~~L~~~i~~~~ 31 (43)
T PF07521_consen 14 FSGHADREELLEFIEQLN 31 (43)
T ss_dssp CSSS-BHHHHHHHHHHHC
T ss_pred ecCCCCHHHHHHHHHhcC
Confidence 467777777777777654
No 319
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=37.83 E-value=84 Score=22.73 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=27.5
Q ss_pred cCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 78 KEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 78 ~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
+...-.++.++++++-+-...+++++|++.+.+++
T Consensus 383 ~~~k~~ItkEeVkKLAkLARLeLSEEElEkl~~dL 417 (477)
T PRK12821 383 TSKKQQLNKDELKKLARLVMFDLDDAELEKLQVEF 417 (477)
T ss_pred ccccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 33445799999999998888889999988866543
No 320
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=37.81 E-value=1.1e+02 Score=19.87 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=29.9
Q ss_pred CCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q psy15709 4 SGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEIN 39 (121)
Q Consensus 4 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 39 (121)
-++.|.+....|...+..+.-.++..++..+-..+.
T Consensus 162 G~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL~ 197 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRLR 197 (224)
T ss_pred cCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHHH
Confidence 367889999999999999888899888887776664
No 321
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=37.35 E-value=29 Score=17.13 Aligned_cols=22 Identities=9% Similarity=-0.038 Sum_probs=8.6
Q ss_pred HHHHHHhhcCCcCCHHHHHHHH
Q psy15709 88 VIVVCHFLRDDDVQEKELKEAF 109 (121)
Q Consensus 88 el~~~l~~~~~~~~~~e~~~~~ 109 (121)
.+.++.......++..|+..+.
T Consensus 11 tLEkv~e~~~~~L~~~e~~~f~ 32 (57)
T PF05321_consen 11 TLEKVIEHNRYKLTDDELEAFN 32 (57)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHH
T ss_pred hHHHHHHHhhCcCCHHHHHHHH
Confidence 3334443333334444444433
No 322
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=37.16 E-value=59 Score=19.52 Aligned_cols=29 Identities=3% Similarity=0.156 Sum_probs=22.1
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
..+..-....|..+.+++|..||+.+.-.
T Consensus 69 q~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 69 QQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 44556666778888888999999988754
No 323
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=37.06 E-value=18 Score=19.08 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=5.4
Q ss_pred eeHHHHHHHHH
Q psy15709 46 ISFEEFLQVAC 56 (121)
Q Consensus 46 i~~~ef~~~~~ 56 (121)
..|..|+..+.
T Consensus 44 p~fPkFLn~LG 54 (88)
T PF15144_consen 44 PDFPKFLNLLG 54 (88)
T ss_pred CchHHHHHHhh
Confidence 44555555443
No 324
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=36.36 E-value=1.5e+02 Score=20.64 Aligned_cols=73 Identities=15% Similarity=0.013 Sum_probs=43.4
Q ss_pred HhcCCCCCHHHHHHHHHHhc--cCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHh
Q psy15709 20 NTLGHFIDDVELETVIDEIN--VESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHF 94 (121)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 94 (121)
..+.+.+..++++.++.++. .|....+-=++|.+.+..+.. .....-+.-+-+.+-..=+|++=..|+.+-++
T Consensus 36 ~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~--e~r~~FidFLerSctaEFSGflLYKEl~rrlk 110 (355)
T PRK13654 36 AKLDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDP--ETRKEFIDFLERSCTAEFSGFLLYKELSRRLK 110 (355)
T ss_pred HhcCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhCCH--HHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcc
Confidence 45667777888999999884 444455666777775544322 12222222333344455578887777776665
No 325
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=35.66 E-value=47 Score=14.68 Aligned_cols=11 Identities=9% Similarity=-0.124 Sum_probs=6.3
Q ss_pred CcCHHHHHHHH
Q psy15709 83 VSSRDVIVVCH 93 (121)
Q Consensus 83 ~i~~~el~~~l 93 (121)
+++.+||..++
T Consensus 1 YLsd~dF~~vF 11 (36)
T PF02209_consen 1 YLSDEDFEKVF 11 (36)
T ss_dssp GS-HHHHHHHH
T ss_pred CcCHHHHHHHH
Confidence 35666776666
No 326
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=35.63 E-value=1.1e+02 Score=22.39 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=19.0
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhc
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLR 96 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 96 (121)
..+..+|+..|..+=--|+..+|+.++.-+
T Consensus 128 gvL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 128 GVLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred HHHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 445666666666666666666666666544
No 327
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=35.62 E-value=16 Score=22.61 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHH
Q psy15709 65 LEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAF 109 (121)
Q Consensus 65 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~ 109 (121)
....++.+|..||+..=...+.+++.+++..-++--...-++.++
T Consensus 47 Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi 91 (179)
T PF03352_consen 47 KREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVI 91 (179)
T ss_dssp THHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHH
Confidence 346789999999998877888999998888766433444444444
No 328
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=35.54 E-value=1.2e+02 Score=19.28 Aligned_cols=23 Identities=4% Similarity=-0.294 Sum_probs=17.7
Q ss_pred CCCCCcCHHHHHHHHhhcCCcCC
Q psy15709 79 EETHVSSRDVIVVCHFLRDDDVQ 101 (121)
Q Consensus 79 ~~~g~i~~~el~~~l~~~~~~~~ 101 (121)
+|=.+++.+|++..|+.+|.++-
T Consensus 66 ~gfly~~~eEL~e~Lk~~g~Rf~ 88 (210)
T COG1059 66 DGFLYLSEEELREKLKEVGYRFY 88 (210)
T ss_pred cccccCCHHHHHHHHHHhcchhc
Confidence 44446799999999999886553
No 329
>COG1438 ArgR Arginine repressor [Transcription]
Probab=35.37 E-value=68 Score=19.33 Aligned_cols=31 Identities=10% Similarity=0.143 Sum_probs=20.5
Q ss_pred CCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 82 HVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 82 g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
..=|.+|+...|.+.|..+|..-+...++++
T Consensus 19 ~i~TQ~Elv~~L~~~Gi~vTQaTvSRDlkel 49 (150)
T COG1438 19 KISTQEELVELLQEEGIEVTQATVSRDLKEL 49 (150)
T ss_pred CCCCHHHHHHHHHHcCCeEehHHHHHHHHHc
Confidence 3556777777777777767766666666554
No 330
>COG5250 RPB4 RNA polymerase II, fourth largest subunit [Transcription]
Probab=35.12 E-value=68 Score=18.46 Aligned_cols=29 Identities=7% Similarity=0.017 Sum_probs=23.2
Q ss_pred cCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 84 SSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 84 i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
=+.+|-+..+.+++.+++++.++.+++..
T Consensus 103 ~saeEAktLiPSL~nkidD~~lq~ilkel 131 (138)
T COG5250 103 QSAEEAKTLIPSLGNKIDDAILQAILKEL 131 (138)
T ss_pred ccHHHHHhhcccccccccHHHHHHHHHHH
Confidence 35677788888889999999998887764
No 331
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=34.79 E-value=95 Score=18.08 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=7.8
Q ss_pred CCcCHHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 82 HVSSRDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 82 g~i~~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
|..+.+.+..+|...| +|+++++..++
T Consensus 119 g~~~~~~f~~~L~~~g--~t~~~~~~~lr 145 (154)
T PF13624_consen 119 GKFDKEAFEEFLKQQG--MTEEEFKEELR 145 (154)
T ss_dssp ----HHHHHHHHH----------------
T ss_pred CCCCHHHHHHHHHHhh--ccccccchhhh
Confidence 7678888888888777 67777665554
No 332
>PRK09389 (R)-citramalate synthase; Provisional
Probab=34.74 E-value=1.4e+02 Score=21.85 Aligned_cols=47 Identities=17% Similarity=0.432 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcc--CCCCceeHHHHHHHHHhhc
Q psy15709 13 EKVRTILNTLGHFIDDVELETVIDEINV--ESGDKISFEEFLQVACHFL 59 (121)
Q Consensus 13 ~el~~~l~~~~~~~~~~~~~~~~~~~d~--~~~g~i~~~ef~~~~~~~~ 59 (121)
.-+...|+.+|+.++.+++..++..+.. +....++-+++..++....
T Consensus 321 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~~ 369 (488)
T PRK09389 321 AALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDVL 369 (488)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Confidence 3456667788998888888888877643 2334688888887775543
No 333
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.43 E-value=1e+02 Score=18.21 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCc---eeHHHHHHHHHhhccCc---------------hhhHHHHHHHHH
Q psy15709 13 EKVRTILNTLGHFIDDVELETVIDEINVESGDK---ISFEEFLQVACHFLRDD---------------DVLEKELKEAFR 74 (121)
Q Consensus 13 ~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~---i~~~ef~~~~~~~~~~~---------------~~~~~~~~~~f~ 74 (121)
..+..++...+...+.+++..+...-+.+|--. +....|+..+....... .-.-.+++.||.
T Consensus 19 n~lv~i~~~~n~~~t~edv~~yLkKedeeGfq~cpd~~l~~fL~GLI~qkRGkde~~P~p~ve~~inNNivLkKLRiAf~ 98 (155)
T COG4807 19 NDLVRILALGNVEATAEDVAVYLKKEDEEGFQRCPDIVLSSFLNGLIYQKRGKDESAPAPEVERRINNNIVLKKLRIAFS 98 (155)
T ss_pred hHHHHHHHhcCcccCHHHHHHHHHHhhHhHHhhCcHHHHHHHhcchheeecccccCCCCCcceeeecchhhHHhHhHhhh
Confidence 445556665566677776666665544332222 33444444333222211 111234555554
Q ss_pred hhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 75 LYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 75 ~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
.- ..++..++...+.++|.-|+.++|+.-
T Consensus 99 lK---------~~Dm~~I~~~~~f~vS~pElsAlfR~~ 127 (155)
T COG4807 99 LK---------TDDMLAILTEQQFRVSMPELSALFRAP 127 (155)
T ss_pred cc---------cchHHHHHhccCcccccHHHHHHHhCC
Confidence 33 335666777777777777777777653
No 334
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=33.80 E-value=82 Score=19.52 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=31.9
Q ss_pred ceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHH
Q psy15709 45 KISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAF 109 (121)
Q Consensus 45 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~ 109 (121)
.+++.+++.+ .+.. ......-..+-+.+ +=|+-+..+|.+.|..+| +|.+++...+
T Consensus 118 ~it~~dl~~~--gL~g--~~sk~rR~~lg~~L---~IGy~N~KqllkrLn~f~--it~~e~~~al 173 (174)
T TIGR00334 118 DISWEDLLEL--GLIG--PASKCKRLRLCNLL---KLGYFNHKQLFKRLNLFQ--IKKSDVMSAL 173 (174)
T ss_pred ccCHHHHHHC--CCCC--ccHHHHHHHHHHHh---CCCCCcHHHHHHHHHHcC--CCHHHHHHHh
Confidence 4777777763 1111 01112222233333 456777778777777777 8888877654
No 335
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=33.29 E-value=1.7e+02 Score=20.44 Aligned_cols=71 Identities=8% Similarity=0.016 Sum_probs=43.6
Q ss_pred cCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCH-HHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 40 VESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSR-DVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 40 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~-~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
..|.+.-.|..|...+..-...-......+-.+|..+-.++--.++. .++..+-..+...++++|....|.
T Consensus 260 ~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~~~i~~l~~~~~l~~sd~eA~~~f~ 331 (354)
T cd05177 260 EGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDIQDLKYVYNNLRPQDTDLEATSYFT 331 (354)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcchHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34555667888887665543322344456777788775444334443 355555556777899988876554
No 336
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=33.12 E-value=58 Score=20.58 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=20.6
Q ss_pred cCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCC
Q psy15709 84 SSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEE 116 (121)
Q Consensus 84 i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~ 116 (121)
-..+|+..+++..| +++++.+.+.+.+-.+.
T Consensus 80 ~e~~el~~iy~~~G--l~~~~a~~i~~~l~~~~ 110 (213)
T PF01988_consen 80 EEKEELVEIYRAKG--LSEEDAEEIAEELSKDK 110 (213)
T ss_pred hHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCc
Confidence 45567778887776 77777777766654443
No 337
>KOG2301|consensus
Probab=32.54 E-value=47 Score=27.95 Aligned_cols=35 Identities=17% Similarity=0.049 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCc
Q psy15709 65 LEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDD 99 (121)
Q Consensus 65 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~ 99 (121)
.-+...++...+|++..|+|...++..+++.+.++
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~pp 1449 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPP 1449 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCc
Confidence 34667788999999999999999999999987543
No 338
>PRK04280 arginine repressor; Provisional
Probab=32.32 E-value=96 Score=18.55 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=22.8
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
.=+.+||...|...|...|..-+..-++++
T Consensus 18 I~tQeeL~~~L~~~Gi~vTQATiSRDikeL 47 (148)
T PRK04280 18 IETQDELVDRLREEGFNVTQATVSRDIKEL 47 (148)
T ss_pred CCCHHHHHHHHHHcCCCeehHHHHHHHHHc
Confidence 446788888888888888887776666654
No 339
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=31.96 E-value=99 Score=17.35 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=26.1
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
.||.+.+..+|...|....+..+..+...+.
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 7999999999999998888888877776663
No 340
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=31.75 E-value=66 Score=20.39 Aligned_cols=26 Identities=8% Similarity=-0.109 Sum_probs=20.8
Q ss_pred HHHHhhccCCCCCcCHHHHHHHHhhc
Q psy15709 71 EAFRLYDKEETHVSSRDVIVVCHFLR 96 (121)
Q Consensus 71 ~~f~~~D~~~~g~i~~~el~~~l~~~ 96 (121)
.+..-+|.+++|.++.+|+..+....
T Consensus 54 ~ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 54 YLLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHHhhhhcccCCCCHHHHHHHHHHH
Confidence 44557899999999999998887653
No 341
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=31.66 E-value=82 Score=16.28 Aligned_cols=61 Identities=11% Similarity=0.040 Sum_probs=32.8
Q ss_pred ceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcC--HHHHHHHHhhcCCcCCHHHHHH
Q psy15709 45 KISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSS--RDVIVVCHFLRDDDVQEKELKE 107 (121)
Q Consensus 45 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~--~~el~~~l~~~~~~~~~~e~~~ 107 (121)
..+|++|...+.....+. .....+..-+..+-. +++.|. ...|..++..++..++++....
T Consensus 26 ~~~W~~~~~~~~~~f~~~-~~~~~~~~~l~~l~Q-~~esv~~y~~rf~~l~~~~~~~~~e~~~v~ 88 (96)
T PF03732_consen 26 FITWEEFKDAFRKRFFPP-DRKEQARQELNSLRQ-GNESVREYVNRFRELARRAPPPMDEEMLVE 88 (96)
T ss_pred CCCHHHHHHHHHHHHhhh-hccccchhhhhhhhc-cCCcHHHHHHHHHHHHHHCCCCcCHHHHHH
Confidence 568999998877665531 233344444555544 444333 3344444444454466655433
No 342
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=31.53 E-value=86 Score=16.52 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=39.2
Q ss_pred CCccCHHHHHHHHHhcCCCC--CH---HHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCC
Q psy15709 7 RGTIEKEKVRTILNTLGHFI--DD---VELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEET 81 (121)
Q Consensus 7 ~g~i~~~el~~~l~~~~~~~--~~---~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 81 (121)
+|.|+..|...+.+.+...+ +. ..+...+...-.. ..+...+...+...... .....-+..++..... +
T Consensus 13 DG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~r~~~l~~~~~ia~a--D 86 (104)
T cd07177 13 DGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE---AGDLAALAALLKELPDA-ELREALLAALWEVALA--D 86 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHh--c
Confidence 78899998877766543221 23 3333444333221 23444555544433221 2333445555555543 5
Q ss_pred CCcCHHHHH
Q psy15709 82 HVSSRDVIV 90 (121)
Q Consensus 82 g~i~~~el~ 90 (121)
|.++..|..
T Consensus 87 G~~~~~E~~ 95 (104)
T cd07177 87 GELDPEERA 95 (104)
T ss_pred cCCCHHHHH
Confidence 677776643
No 343
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=31.50 E-value=1.1e+02 Score=17.75 Aligned_cols=43 Identities=2% Similarity=-0.015 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhccCCCCCcCHHHHHHHHhhc-CCcCCHHHHHHHHHh
Q psy15709 66 EKELKEAFRLYDKEETHVSSRDVIVVCHFLR-DDDVQEKELKEAFRL 111 (121)
Q Consensus 66 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~e~~~~~~~ 111 (121)
..++..+|+.|- .+.|+.+.+..++... |..+|..++..+..+
T Consensus 36 ~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~ 79 (122)
T PF06648_consen 36 LDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNR 79 (122)
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHH
Confidence 344555555553 3345555555555543 345555555554433
No 344
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=31.49 E-value=78 Score=15.97 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=6.5
Q ss_pred CCcCCHHHHHHHHHhh
Q psy15709 97 DDDVQEKELKEAFRLY 112 (121)
Q Consensus 97 ~~~~~~~e~~~~~~~~ 112 (121)
|..++.+++..+++.+
T Consensus 16 G~~i~~~~i~~~L~~l 31 (70)
T PF03484_consen 16 GIDISPEEIIKILKRL 31 (70)
T ss_dssp TS---HHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 4455555555555443
No 345
>PTZ00017 histone H2A; Provisional
Probab=31.41 E-value=1.2e+02 Score=17.99 Aligned_cols=47 Identities=11% Similarity=-0.037 Sum_probs=33.4
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCC
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMS 119 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~ 119 (121)
+.++.+....-.++...|+++.+..+++ .++|+..++...-+.+.|.
T Consensus 64 EILELAgNaa~d~kk~RItPrHi~lAI~------nDeEL~~Ll~~vtIa~GGV 110 (134)
T PTZ00017 64 EVLELAGNAAKDNKKKRITPRHIQLAIR------NDEELNKLLAGVTIASGGV 110 (134)
T ss_pred HHHHHHHHHHHhcCCCeecHHHHHhhcc------CcHHHHHHHcCCcccCCcc
Confidence 4566666666666777899998888764 5778888887655555443
No 346
>PRK09462 fur ferric uptake regulator; Provisional
Probab=31.32 E-value=1.2e+02 Score=17.89 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=11.9
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHH
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEK 103 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~ 103 (121)
.+.+|.+|+...+++.++.++..
T Consensus 31 ~~h~sa~eI~~~l~~~~~~i~~a 53 (148)
T PRK09462 31 NHHVSAEDLYKRLIDMGEEIGLA 53 (148)
T ss_pred CCCCCHHHHHHHHHhhCCCCCHH
Confidence 34555655555555554444433
No 347
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=31.30 E-value=1e+02 Score=17.33 Aligned_cols=22 Identities=9% Similarity=-0.100 Sum_probs=13.4
Q ss_pred HHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 87 DVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 87 ~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
+++.+-+.+ ++++|++.+..+.
T Consensus 81 ~~lqkRle~----l~~eE~~~L~~ei 102 (104)
T PF11460_consen 81 EELQKRLEE----LSPEELEALQAEI 102 (104)
T ss_pred HHHHHHHHh----CCHHHHHHHHHHh
Confidence 344444443 6788887777664
No 348
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=31.27 E-value=93 Score=16.79 Aligned_cols=60 Identities=10% Similarity=0.153 Sum_probs=30.1
Q ss_pred eeHHHHHHHHHhhccCc---hhhHHHHHHHHHhhccC--CCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 46 ISFEEFLQVACHFLRDD---DVLEKELKEAFRLYDKE--ETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 46 i~~~ef~~~~~~~~~~~---~~~~~~~~~~f~~~D~~--~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
.|-.+|+.++..+.... ......+-..|...-.. +++.| +...-+..-+++.+-..++.|
T Consensus 10 yTE~EFl~~v~~i~~~~~~~ee~~d~lv~hF~~iteHP~gSDLI-------fYP~~~~edsPegIv~~vKeW 74 (85)
T PF01320_consen 10 YTESEFLEFVKEIFNAELKTEEEHDELVDHFEKITEHPDGSDLI-------FYPEDGREDSPEGIVKEVKEW 74 (85)
T ss_dssp SBHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHH--TTTTHHH-------HS-STTSTSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCCCCcee-------eeCCCCCCCCHHHHHHHHHHH
Confidence 45677777777776632 12223444445554322 22222 223345556677776666665
No 349
>PRK03430 hypothetical protein; Validated
Probab=31.26 E-value=1.3e+02 Score=18.36 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=29.0
Q ss_pred HHHHHHhh-ccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 69 LKEAFRLY-DKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 69 ~~~~f~~~-D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
+-.+|+.| ..+.+-.++.+++.+-|...| +.++++...+.
T Consensus 5 L~YLFEnY~~~d~~~~pd~~~L~~~L~~aG--F~~~eI~~AL~ 45 (157)
T PRK03430 5 LMYLFETYIHNEAELRVDQDKLEDDLTDAG--FHREDIYNALL 45 (157)
T ss_pred hhHHHHHhhccccccCCCHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 45677765 345666888999999999888 77777766543
No 350
>PRK03341 arginine repressor; Provisional
Probab=30.56 E-value=1.3e+02 Score=18.42 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=28.0
Q ss_pred CCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 80 ETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 80 ~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
..+..+.+||...|.+.|+..|..-+..-++++.
T Consensus 26 ~~~i~tQ~eL~~~L~~~Gi~vTQaTiSRDl~eL~ 59 (168)
T PRK03341 26 RQSVRSQAELAALLADEGIEVTQATLSRDLDELG 59 (168)
T ss_pred HCCCccHHHHHHHHHHcCCcccHHHHHHHHHHhc
Confidence 3567899999999999999999988877777653
No 351
>KOG2419|consensus
Probab=30.52 E-value=50 Score=25.08 Aligned_cols=64 Identities=23% Similarity=0.257 Sum_probs=44.8
Q ss_pred HHHHHHhccCCCCceeHHHHHHHHHhhccCc-------hhhHHHHHHHHHhhccCCC-----------------------
Q psy15709 32 ETVIDEINVESGDKISFEEFLQVACHFLRDD-------DVLEKELKEAFRLYDKEET----------------------- 81 (121)
Q Consensus 32 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-------~~~~~~~~~~f~~~D~~~~----------------------- 81 (121)
..++..+|.+.++..+|.+|......+.... ......-..+|..+|..++
T Consensus 440 ~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s~ 519 (975)
T KOG2419|consen 440 KRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKSF 519 (975)
T ss_pred hhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccccc
Confidence 4566677778889999999888766654410 0111223567888888888
Q ss_pred CCcCHHHHHHHHhh
Q psy15709 82 HVSSRDVIVVCHFL 95 (121)
Q Consensus 82 g~i~~~el~~~l~~ 95 (121)
|.++.+|+..+++.
T Consensus 520 ~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 520 GVVTVDELVALLAL 533 (975)
T ss_pred CeeEHHHHHHHHHH
Confidence 99999999888873
No 352
>PTZ00315 2'-phosphotransferase; Provisional
Probab=30.37 E-value=1.3e+02 Score=22.63 Aligned_cols=36 Identities=6% Similarity=0.060 Sum_probs=27.4
Q ss_pred CCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q psy15709 4 SGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEIN 39 (121)
Q Consensus 4 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 39 (121)
.|.+|++...++....+.-+..++.+.+..++..-+
T Consensus 400 ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~nd 435 (582)
T PTZ00315 400 ITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSD 435 (582)
T ss_pred cCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCC
Confidence 467899999999888775566678888888776643
No 353
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=30.09 E-value=80 Score=15.69 Aligned_cols=30 Identities=7% Similarity=0.024 Sum_probs=20.4
Q ss_pred HHHHHHhhccCCCCCcCHHHHHHHHhhcCC
Q psy15709 69 LKEAFRLYDKEETHVSSRDVIVVCHFLRDD 98 (121)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~~ 98 (121)
+..+++.++.+....++.++...-+...|.
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~ 35 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKYGP 35 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHHSS
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhccc
Confidence 455666676555666788887777777764
No 354
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=30.04 E-value=65 Score=14.61 Aligned_cols=24 Identities=8% Similarity=-0.144 Sum_probs=13.8
Q ss_pred cCHHHHHHHHhhcCC----cCCHHHHHH
Q psy15709 84 SSRDVIVVCHFLRDD----DVQEKELKE 107 (121)
Q Consensus 84 i~~~el~~~l~~~~~----~~~~~e~~~ 107 (121)
.+..||+.+-+++|+ .+..+++-.
T Consensus 5 ~~~~eL~~iAk~lgI~~~~~~~K~eLI~ 32 (43)
T PF07498_consen 5 MTLSELREIAKELGIEGYSKMRKQELIF 32 (43)
T ss_dssp S-HHHHHHHHHCTT-TTGCCS-HHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCcCCHHHHHH
Confidence 466777777777775 355666543
No 355
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=29.93 E-value=1.9e+02 Score=19.87 Aligned_cols=74 Identities=15% Similarity=-0.017 Sum_probs=42.2
Q ss_pred HhcCCCCCHHHHHHHHHHhc--cCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhh
Q psy15709 20 NTLGHFIDDVELETVIDEIN--VESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFL 95 (121)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 95 (121)
.++.+.+..++++.++.++. .|....+-=++|.+....+.. .....-+.-+-+.+-..=+|++=..|+.+-++.
T Consensus 16 ~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~--e~r~~FidFLerSctaEFSGflLYKEl~rrlk~ 91 (323)
T cd01047 16 AALDISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDP--ELRQIFLEFLERSCTSEFSGFLLYKELGRRLKN 91 (323)
T ss_pred HhcCCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCH--HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHccc
Confidence 45667777888888888874 344445666667665443322 112222222333444445777777777666654
No 356
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=29.74 E-value=20 Score=15.12 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=7.6
Q ss_pred HHHHhhccCCCCCC
Q psy15709 107 EAFRLYDKEEPMSI 120 (121)
Q Consensus 107 ~~~~~~d~~~dg~i 120 (121)
.++++-|.+++-+|
T Consensus 3 ~LL~qEDTDgn~qI 16 (30)
T PF07492_consen 3 SLLEQEDTDGNFQI 16 (30)
T ss_pred hHhhccccCCCcEE
Confidence 44555566665544
No 357
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=29.73 E-value=1.6e+02 Score=18.89 Aligned_cols=31 Identities=6% Similarity=0.260 Sum_probs=15.3
Q ss_pred HHHHHHHHhccCCCCce-eHHHHHHHHHhhcc
Q psy15709 30 ELETVIDEINVESGDKI-SFEEFLQVACHFLR 60 (121)
Q Consensus 30 ~~~~~~~~~d~~~~g~i-~~~ef~~~~~~~~~ 60 (121)
++...|..+-.+.+..| ++.-++.+|..+..
T Consensus 85 ~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl~ 116 (205)
T PF12238_consen 85 KMTKYYKKHIYKEDSEVKDYNGLVKFCKDFLD 116 (205)
T ss_pred HHHHHHHHhccCcccccccHHHHHHHHHHHhc
Confidence 34444444444444445 55555555555544
No 358
>PF11181 YflT: Heat induced stress protein YflT
Probab=29.71 E-value=1e+02 Score=16.87 Aligned_cols=25 Identities=16% Similarity=-0.049 Sum_probs=20.5
Q ss_pred HHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 87 DVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 87 ~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
++++..|.++| ++++++...-+.++
T Consensus 71 d~~~~~l~~lG--l~~~ea~~y~~~l~ 95 (103)
T PF11181_consen 71 DELRSKLESLG--LSEDEAERYEEELD 95 (103)
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 47888889999 99999888777765
No 359
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=29.58 E-value=83 Score=15.72 Aligned_cols=28 Identities=4% Similarity=-0.064 Sum_probs=15.3
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
.|.++..+|..-+ + ++++.++.++..+-
T Consensus 12 ~~~~S~~eLa~~~---~--~s~~~ve~mL~~l~ 39 (69)
T PF09012_consen 12 RGRVSLAELAREF---G--ISPEAVEAMLEQLI 39 (69)
T ss_dssp S-SEEHHHHHHHT---T----HHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHH---C--cCHHHHHHHHHHHH
Confidence 4556666554443 3 77777777777663
No 360
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=29.47 E-value=1.7e+02 Score=19.40 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=46.1
Q ss_pred HHhcCCCCCHHHHHHHHHHhccC-------------CCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCc-
Q psy15709 19 LNTLGHFIDDVELETVIDEINVE-------------SGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVS- 84 (121)
Q Consensus 19 l~~~~~~~~~~~~~~~~~~~d~~-------------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i- 84 (121)
|+...+-|..+.+..+.+.|..+ -.|-||+++.+..+..-...... .++... .+.... ++=.|
T Consensus 139 LRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~D-eee~~d-I~~ls~-~~~~Vr 215 (293)
T COG4535 139 LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYD-EEEDAD-IRQLSR-HTWRVR 215 (293)
T ss_pred cccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccc-hhhhhh-hHhhcC-CceEEE
Confidence 33334445566777788777432 34789999988876654442111 122222 333321 11111
Q ss_pred CHHHHHHHHhhcCCcCCHHHHHHH
Q psy15709 85 SRDVIVVCHFLRDDDVQEKELKEA 108 (121)
Q Consensus 85 ~~~el~~~l~~~~~~~~~~e~~~~ 108 (121)
-..++..+=..+|-++++++++.+
T Consensus 216 ALT~IedFNe~F~t~FsDeevDTI 239 (293)
T COG4535 216 ALTEIEDFNEAFGTHFSDEEVDTI 239 (293)
T ss_pred ecccHHHHHHHhcCCCChhhhhhh
Confidence 122334444456888999998764
No 361
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=29.45 E-value=39 Score=19.79 Aligned_cols=21 Identities=0% Similarity=-0.307 Sum_probs=9.8
Q ss_pred ccCCCCCcCHHHHHHHHhhcC
Q psy15709 77 DKEETHVSSRDVIVVCHFLRD 97 (121)
Q Consensus 77 D~~~~g~i~~~el~~~l~~~~ 97 (121)
+..|...|...+|+.++..+|
T Consensus 12 NVGG~nki~MaeLr~~l~~~G 32 (137)
T PF08002_consen 12 NVGGKNKIKMAELREALEDLG 32 (137)
T ss_dssp SBTTBS---HHHHHHHHHHCT
T ss_pred ecCCCCcccHHHHHHHHHHcC
Confidence 344444566666666665554
No 362
>PRK00441 argR arginine repressor; Provisional
Probab=29.43 E-value=1.3e+02 Score=17.97 Aligned_cols=32 Identities=6% Similarity=0.048 Sum_probs=24.9
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
.+..+.+|+.+.|.+.|...|..-+..-++.+
T Consensus 16 ~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L 47 (149)
T PRK00441 16 KEIETQEELAEELKKMGFDVTQATVSRDIKEL 47 (149)
T ss_pred cCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHc
Confidence 56678888888888888888888777766655
No 363
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=29.37 E-value=1.6e+02 Score=18.84 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=26.1
Q ss_pred CCCceeHHHHHHHHHhhccCc----------hhhHHHHHHHHHhhccCCCCCc
Q psy15709 42 SGDKISFEEFLQVACHFLRDD----------DVLEKELKEAFRLYDKEETHVS 84 (121)
Q Consensus 42 ~~g~i~~~ef~~~~~~~~~~~----------~~~~~~~~~~f~~~D~~~~g~i 84 (121)
..|.++|..++.-+.....+. .....++-..-+.||++..|.|
T Consensus 174 d~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I 226 (246)
T PF10897_consen 174 DKGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPI 226 (246)
T ss_pred hcCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCce
Confidence 346788888877776654421 1222445555677777777754
No 364
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.36 E-value=76 Score=16.03 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=14.5
Q ss_pred CCCceeHHHHHHHHHhhcc
Q psy15709 42 SGDKISFEEFLQVACHFLR 60 (121)
Q Consensus 42 ~~g~i~~~ef~~~~~~~~~ 60 (121)
..|.|+++.|+..+..+.+
T Consensus 36 ~~g~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 36 QRGSIDLDTFLKQVRSLAR 54 (65)
T ss_dssp HTTSS-HHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH
Confidence 3578999999999887755
No 365
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=29.33 E-value=1.3e+02 Score=17.82 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=37.8
Q ss_pred CCCceeHHHHHHHHHhhcc--CchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcC
Q psy15709 42 SGDKISFEEFLQVACHFLR--DDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRD 97 (121)
Q Consensus 42 ~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 97 (121)
.....+..+|+.-+..... .+.........+|+.+.. .|+..++.++...+-
T Consensus 72 ~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~r----~Is~gei~~v~s~Lp 125 (135)
T COG5502 72 PKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLKR----HISPGEIDKVRSRLP 125 (135)
T ss_pred CCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHCc
Confidence 5577899999988776655 223445556688999854 699999988887653
No 366
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=29.27 E-value=1.3e+02 Score=17.70 Aligned_cols=36 Identities=14% Similarity=0.010 Sum_probs=24.7
Q ss_pred cCCCCCcC---HHHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 78 KEETHVSS---RDVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 78 ~~~~g~i~---~~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
.|....++ .+|++++|+.-+..+.+..+..+=+.+.
T Consensus 76 ~D~R~GLD~~ak~EI~~IM~~~~v~FDeARliy~~~~f~ 114 (128)
T PF09435_consen 76 GDSRAGLDDAAKREIRRIMKRRRVNFDEARLIYTERRFK 114 (128)
T ss_pred CCcccCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 33444466 7899999998887787777655544443
No 367
>PRK05066 arginine repressor; Provisional
Probab=29.20 E-value=1.3e+02 Score=18.15 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=24.1
Q ss_pred CCcCHHHHHHHHhhcCCc-CCHHHHHHHHHhh
Q psy15709 82 HVSSRDVIVVCHFLRDDD-VQEKELKEAFRLY 112 (121)
Q Consensus 82 g~i~~~el~~~l~~~~~~-~~~~e~~~~~~~~ 112 (121)
..=+.+||...|.+.|.. .|..-+..-++++
T Consensus 22 ~I~tQeeL~~~L~~~Gi~~vTQATiSRDikeL 53 (156)
T PRK05066 22 KFGSQGEIVTALQEQGFDNINQSKVSRMLTKF 53 (156)
T ss_pred CCCCHHHHHHHHHHCCCCeecHHHHHHHHHHc
Confidence 345788888999888888 7888877766665
No 368
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=29.19 E-value=1e+02 Score=16.55 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=10.0
Q ss_pred CHHHHHHHHhhcCCcCCHHHHHHH
Q psy15709 85 SRDVIVVCHFLRDDDVQEKELKEA 108 (121)
Q Consensus 85 ~~~el~~~l~~~~~~~~~~e~~~~ 108 (121)
+..||...+.+-...++..++..+
T Consensus 2 tk~eli~~ia~~~~~~s~~~~~~v 25 (94)
T PRK00199 2 TKSELIERLAARNPHLSAKDVENA 25 (94)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHH
Confidence 344554444432222444444443
No 369
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=28.77 E-value=65 Score=14.19 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHhhccCCCCC
Q psy15709 100 VQEKELKEAFRLYDKEEPMS 119 (121)
Q Consensus 100 ~~~~e~~~~~~~~d~~~dg~ 119 (121)
++.++++.++.-+--+.||.
T Consensus 13 cs~edL~~L~~~Lt~dkdG~ 32 (35)
T PF13099_consen 13 CSNEDLKDLVDILTHDKDGK 32 (35)
T ss_pred CCHHHHHHHHHHHhcCCCCC
Confidence 56778888877765555554
No 370
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=28.62 E-value=33 Score=18.78 Aligned_cols=24 Identities=21% Similarity=-0.000 Sum_probs=12.7
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHH
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKE 104 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e 104 (121)
++.-+++++.+-|+.+|..+++++
T Consensus 39 ns~~s~~~~~~~L~~~Gi~~~~~~ 62 (101)
T PF13344_consen 39 NSSRSREEYAKKLKKLGIPVDEDE 62 (101)
T ss_dssp -SSS-HHHHHHHHHHTTTT--GGG
T ss_pred CCCCCHHHHHHHHHhcCcCCCcCE
Confidence 445666777777777776554433
No 371
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=28.60 E-value=53 Score=18.86 Aligned_cols=18 Identities=6% Similarity=-0.162 Sum_probs=14.5
Q ss_pred CCCCCcCHHHHHHHHhhc
Q psy15709 79 EETHVSSRDVIVVCHFLR 96 (121)
Q Consensus 79 ~~~g~i~~~el~~~l~~~ 96 (121)
|-+|.|+.+++.+++.++
T Consensus 6 DtSGSis~~~l~~fl~ev 23 (126)
T PF09967_consen 6 DTSGSISDEELRRFLSEV 23 (126)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 568889999998888764
No 372
>KOG2116|consensus
Probab=28.56 E-value=68 Score=24.40 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=32.2
Q ss_pred CCCCccCHHHH-HHHHHhcCCCCCHHHHHHHHHHhccCC
Q psy15709 5 GKRGTIEKEKV-RTILNTLGHFIDDVELETVIDEINVES 42 (121)
Q Consensus 5 ~~~g~i~~~el-~~~l~~~~~~~~~~~~~~~~~~~d~~~ 42 (121)
|=+|+|+..+. .++|..+|.+.+..-+..+|..+..||
T Consensus 536 DIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NG 574 (738)
T KOG2116|consen 536 DIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENG 574 (738)
T ss_pred cCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCC
Confidence 44799999975 788899999999999999999986654
No 373
>PTZ00056 glutathione peroxidase; Provisional
Probab=28.29 E-value=1.1e+02 Score=19.15 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=17.4
Q ss_pred CceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCC
Q psy15709 44 DKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEET 81 (121)
Q Consensus 44 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 81 (121)
|.++.+++...+..+... ....++|+.||+-..
T Consensus 163 g~~~~~~l~~~I~~ll~~-----~~~~~~~~~~~~~~~ 195 (199)
T PTZ00056 163 PRTEPLELEKKIAELLGV-----KDYQELFKNYDKLHP 195 (199)
T ss_pred CCCCHHHHHHHHHHHHHH-----HHHHHHHHhhhhcCc
Confidence 444555555555555442 244566666665443
No 374
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=28.21 E-value=83 Score=15.28 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=7.2
Q ss_pred HHHHhhcCCcCCHHHHHHHH
Q psy15709 90 VVCHFLRDDDVQEKELKEAF 109 (121)
Q Consensus 90 ~~~l~~~~~~~~~~e~~~~~ 109 (121)
...++.+| +|=+++..++
T Consensus 7 I~~~r~lG--fsL~eI~~~l 24 (65)
T PF09278_consen 7 IRRLRELG--FSLEEIRELL 24 (65)
T ss_dssp HHHHHHTT----HHHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHH
Confidence 33344444 4444444444
No 375
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=28.10 E-value=1.1e+02 Score=16.42 Aligned_cols=24 Identities=8% Similarity=0.248 Sum_probs=10.1
Q ss_pred CHHHHHHHHhhcCCcCCHHHHHHH
Q psy15709 85 SRDVIVVCHFLRDDDVQEKELKEA 108 (121)
Q Consensus 85 ~~~el~~~l~~~~~~~~~~e~~~~ 108 (121)
+..||...+.+-...++..++..+
T Consensus 2 ~k~eli~~i~~~~~~~s~~~v~~v 25 (94)
T TIGR00988 2 TKSELIERIATQQSHLPAKDVEDA 25 (94)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHH
Confidence 344555555432222444444433
No 376
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=28.10 E-value=2e+02 Score=19.51 Aligned_cols=69 Identities=7% Similarity=-0.096 Sum_probs=42.2
Q ss_pred CCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccC-CCCCcC--HHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 42 SGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKE-ETHVSS--RDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 42 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~-~~g~i~--~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
+.+.-.|..|...+......-......+-.++..+-.+ +-..++ ...++.+-..+...++++++...+.
T Consensus 196 g~~s~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~~~~~i~~l~~r~~l~~se~~a~~~~~ 267 (293)
T cd05168 196 GVNSDLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKAGEFTIQQLRDRFMLNLTEEQLEVFVD 267 (293)
T ss_pred CCCCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccCchHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34455678888877655442233345566667776444 223344 5667776667777889888766553
No 377
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=27.40 E-value=1.2e+02 Score=16.91 Aligned_cols=38 Identities=5% Similarity=-0.006 Sum_probs=22.1
Q ss_pred HHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHH
Q psy15709 71 EAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAF 109 (121)
Q Consensus 71 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~ 109 (121)
.+++.+...+. .+|.+++...|+..++.++..-+-..+
T Consensus 12 ~Il~~l~~~~~-~~ta~ei~~~l~~~~~~is~~TVYR~L 49 (120)
T PF01475_consen 12 AILELLKESPE-HLTAEEIYDKLRKKGPRISLATVYRTL 49 (120)
T ss_dssp HHHHHHHHHSS-SEEHHHHHHHHHHTTTT--HHHHHHHH
T ss_pred HHHHHHHcCCC-CCCHHHHHHHhhhccCCcCHHHHHHHH
Confidence 34444433333 788888888888877777655443333
No 378
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=27.22 E-value=1.7e+02 Score=18.61 Aligned_cols=82 Identities=16% Similarity=0.050 Sum_probs=46.9
Q ss_pred CCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCc
Q psy15709 5 GKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVS 84 (121)
Q Consensus 5 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 84 (121)
|=+|+|+.++....+..- +.+. +...+++.+ -++++++.+....+...... +..+-++-+.+..-. .-
T Consensus 9 DFDGTITl~Ds~~~itdt-f~~~--e~k~l~~~v---ls~tiS~rd~~g~mf~~i~~--s~~Eile~llk~i~I----dp 76 (220)
T COG4359 9 DFDGTITLNDSNDYITDT-FGPG--EWKALKDGV---LSKTISFRDGFGRMFGSIHS--SLEEILEFLLKDIKI----DP 76 (220)
T ss_pred cCCCceEecchhHHHHhc-cCch--HHHHHHHHH---hhCceeHHHHHHHHHHhcCC--CHHHHHHHHHhhccc----Cc
Confidence 447999999998887631 1222 334666665 24579988877766555442 223333333332322 23
Q ss_pred CHHHHHHHHhhcCC
Q psy15709 85 SRDVIVVCHFLRDD 98 (121)
Q Consensus 85 ~~~el~~~l~~~~~ 98 (121)
...|+..++++.+.
T Consensus 77 ~fKef~e~ike~di 90 (220)
T COG4359 77 GFKEFVEWIKEHDI 90 (220)
T ss_pred cHHHHHHHHHHcCC
Confidence 45677777777654
No 379
>PF08339 RTX_C: RTX C-terminal domain; InterPro: IPR013550 This domain describes the C-terminal region of various bacterial haemolysins and leukotoxins, which belong to the RTX family of toxins. These are produced by various Gram negative bacteria, such as Escherichia coli (P09983 from SWISSPROT) and Actinobacillus pleuropneumoniae (P15377 from SWISSPROT). RTX toxins may interact with lipopolysaccharide (LPS) to functionally impair and eventually kill leukocytes []. This region is found in association with the RTX N-terminal domain (IPR003995 from INTERPRO) and multiple hemolysin-type calcium-binding repeats (IPR001343 from INTERPRO).
Probab=26.97 E-value=1.4e+02 Score=17.99 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=22.4
Q ss_pred CCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHh
Q psy15709 41 ESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHF 94 (121)
Q Consensus 41 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 94 (121)
++.+.|++.+|..--..-. ...+++ +.+|++|. +||.+.+.+++.
T Consensus 27 ~~~~~itiknWFk~~~~~~-----~n~KIE---qIidKnG~-~ITs~qld~l~~ 71 (145)
T PF08339_consen 27 DNSNSITIKNWFKEDNSGN-----YNHKIE---QIIDKNGR-RITSDQLDKLLE 71 (145)
T ss_pred CCCCcEEehhhhhcccccc-----chhhHH---HHhcCCCC-EEcHhHHHHHhc
Confidence 3556788887765422110 111222 33455544 466666666655
No 380
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=26.96 E-value=26 Score=20.73 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=28.5
Q ss_pred ccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccC
Q psy15709 9 TIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRD 61 (121)
Q Consensus 9 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 61 (121)
.|+..|++.+++++...+... +....-.+.+..|+|+.+...+..+...
T Consensus 9 ~vTldevr~Av~~f~~~lp~g----i~rt~lv~~d~~iD~~~L~~yL~g~p~q 57 (140)
T PF13075_consen 9 DVTLDEVRRAVHQFEEDLPKG----INRTILVNDDQSIDFERLAPYLGGIPDQ 57 (140)
T ss_pred cccHHHHHHHHHHHHHhCccC----CceEEEEcCCceecHHHHhhhcCCCCCc
Confidence 467777777776543222211 1111223456788888888888777553
No 381
>smart00414 H2A Histone 2A.
Probab=26.78 E-value=1.3e+02 Score=16.95 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=32.3
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCC
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMS 119 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~ 119 (121)
+-++.+....-.++...|+++.+..+++ .++|+..+++..-..+.|.
T Consensus 46 EILeLagn~a~~~k~~rItp~hi~lAi~------nD~EL~~L~~~vti~~ggv 92 (106)
T smart00414 46 EVLELAGNAARDNKKRRITPRHLQLAIR------NDEELNKLLKGVTIAQGGV 92 (106)
T ss_pred HHHHHHHHHHHhcCCCccchHHHhhhcc------CCHHHHHHHcCcccCCCcc
Confidence 4455566555555677899998887764 4778888888765555444
No 382
>PF03395 Pox_P4A: Poxvirus P4A protein; InterPro: IPR005058 P4A is one of the most abundant structural proteins in the Vaccinia virion.; GO: 0005198 structural molecule activity, 0019012 virion
Probab=26.77 E-value=2.8e+02 Score=22.03 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=18.5
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
.||.+.+..+|.+.. .+.+|.+.++.
T Consensus 549 rVtk~~i~~~L~K~s--csk~eaeKlis 574 (888)
T PF03395_consen 549 RVTKQYIINMLSKAS--CSKDEAEKLIS 574 (888)
T ss_pred hhhHHHHHHHHHhhc--CCHHHHHHHHH
Confidence 688888888888654 56666666554
No 383
>KOG0928|consensus
Probab=26.43 E-value=3.1e+02 Score=23.15 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=22.3
Q ss_pred CceeHHHHHHHHHhhccCchhhHHHHHHHHHhh
Q psy15709 44 DKISFEEFLQVACHFLRDDDVLEKELKEAFRLY 76 (121)
Q Consensus 44 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~ 76 (121)
.++|+++|+..+.....++.-+.+-+.++|+.+
T Consensus 660 ~~MT~dDf~rNlrg~n~g~DFpreyLseiY~SI 692 (1386)
T KOG0928|consen 660 RKMTFDDFIRNLRGINGGKDFPREYLSEIYQSI 692 (1386)
T ss_pred ccCCHHHHhhhcccccCCCCCCHHHHHHHHHHH
Confidence 446777777777766666556666677777766
No 384
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=26.31 E-value=72 Score=19.50 Aligned_cols=17 Identities=41% Similarity=0.454 Sum_probs=8.7
Q ss_pred hHHHHHHHHHhhccCCC
Q psy15709 65 LEKELKEAFRLYDKEET 81 (121)
Q Consensus 65 ~~~~~~~~f~~~D~~~~ 81 (121)
....++.+|+.--+.+.
T Consensus 34 dT~~Lr~aFr~pPkS~G 50 (175)
T PF09441_consen 34 DTSELREAFRSPPKSDG 50 (175)
T ss_pred CHHHHHHHhcCCCCcCC
Confidence 34555666665544433
No 385
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=26.24 E-value=94 Score=15.24 Aligned_cols=43 Identities=19% Similarity=0.096 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 64 VLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 64 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
..+.-++.+|.... +.+.++..++.+.|. +++.-+..+++.+.
T Consensus 5 ~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~ 47 (60)
T PF01325_consen 5 SEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLA 47 (60)
T ss_dssp HHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHH
Confidence 34566788888886 677899988888774 77777777777764
No 386
>PF15601 Imm42: Immunity protein 42
Probab=26.21 E-value=84 Score=18.56 Aligned_cols=17 Identities=0% Similarity=-0.267 Sum_probs=11.0
Q ss_pred CCCcCHHHHHHHHhhcC
Q psy15709 81 THVSSRDVIVVCHFLRD 97 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~ 97 (121)
+|.+..+++..+++++.
T Consensus 47 ~g~L~~~~~~~A~~eL~ 63 (134)
T PF15601_consen 47 RGYLRYEELEKALKELE 63 (134)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 56677777766666553
No 387
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=26.10 E-value=1.1e+02 Score=17.64 Aligned_cols=18 Identities=6% Similarity=-0.304 Sum_probs=15.3
Q ss_pred CCcCHHHHHHHHhhcCCc
Q psy15709 82 HVSSRDVIVVCHFLRDDD 99 (121)
Q Consensus 82 g~i~~~el~~~l~~~~~~ 99 (121)
|.+++..++++++.+|.+
T Consensus 3 ~~~nprk~rkmmkkmGik 20 (115)
T PRK06369 3 GGMNPRKMKQMMKQMGID 20 (115)
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 568889999999999955
No 388
>PLN00153 histone H2A; Provisional
Probab=25.99 E-value=1.5e+02 Score=17.44 Aligned_cols=47 Identities=11% Similarity=-0.061 Sum_probs=33.1
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCC
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMS 119 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~ 119 (121)
+.++.+-...-.++...|+++.+..+++ .++|+..+++..-+.+.|.
T Consensus 61 EVLELAgnaa~d~kk~RItPrHi~lAI~------nDeEL~~Ll~~vTIa~GGV 107 (129)
T PLN00153 61 EVLELAGNAARDNKKNRIVPRHIQLAIR------NDEELGKLLGEVTIASGGV 107 (129)
T ss_pred HHHHHHHHHHHhcCCCccChHHHHhhcc------CcHHHHHHHCCCccCCCcc
Confidence 4566666666666778999988877763 5778888888655555443
No 389
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=25.97 E-value=2.2e+02 Score=20.98 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcc--CCCCceeHHHHHHHHHh
Q psy15709 14 KVRTILNTLGHFIDDVELETVIDEINV--ESGDKISFEEFLQVACH 57 (121)
Q Consensus 14 el~~~l~~~~~~~~~~~~~~~~~~~d~--~~~g~i~~~ef~~~~~~ 57 (121)
-+...++.+|+.++++++..++..+.. +..+.++-+++..++..
T Consensus 431 av~~~l~~lG~~~~~~~~~~l~~~vk~~a~~~~~l~~~el~~i~~~ 476 (503)
T PLN03228 431 AVKDRLKELGYELDDEKLNEVFSRFRDLTKEKKRITDADLKALVVN 476 (503)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhc
Confidence 345566777887777777777766532 12245777777776544
No 390
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=25.94 E-value=1.8e+02 Score=20.62 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHH---HHHHHHhhccCchhhHHHHHHHHHhh
Q psy15709 15 VRTILNTLGHFIDDVELETVIDEINVESGDKISFEE---FLQVACHFLRDDDVLEKELKEAFRLY 76 (121)
Q Consensus 15 l~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e---f~~~~~~~~~~~~~~~~~~~~~f~~~ 76 (121)
+..+.+.-|...+.....++|...-+.+..+|+-.. |+.++...+.. ....+.++.+|+.-
T Consensus 266 VQ~iAKerGEKCPTKVtnqvfr~ak~~gasyinkpkmrhyvhcyalhcld-~e~sn~lrr~~ker 329 (386)
T PF01698_consen 266 VQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLD-EEASNALRRAFKER 329 (386)
T ss_dssp HHHHHHHTT----SS--HHHHHHHHHTT-TT--HHHHHHCHHHHHHHHH--HHHHHHHHHHHHHT
T ss_pred HHHHHhhhcccCchhHHHHHHHHHHHhcccccCChhhhhheeeeeeeccC-hhhhHHHHHHHHHh
Confidence 344444557766667778899888888888898654 45555554443 45567788888754
No 391
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=25.76 E-value=56 Score=19.83 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=24.8
Q ss_pred CCccCHHHH-HHHHHhcCCCCCHHHHHHHHHHhccCC
Q psy15709 7 RGTIEKEKV-RTILNTLGHFIDDVELETVIDEINVES 42 (121)
Q Consensus 7 ~g~i~~~el-~~~l~~~~~~~~~~~~~~~~~~~d~~~ 42 (121)
+|+|+.++. ..++..+|.+-+..-+..++..+..+|
T Consensus 7 DGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~G 43 (157)
T PF08235_consen 7 DGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNG 43 (157)
T ss_pred cCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCC
Confidence 688888874 555666676666666777777776554
No 392
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=25.72 E-value=84 Score=14.52 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=20.6
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
+.+..+...+...+| ++..++...|..
T Consensus 24 ~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (56)
T smart00389 24 YPSREEREELAAKLG--LSERQVKVWFQN 50 (56)
T ss_pred CCCHHHHHHHHHHHC--cCHHHHHHhHHH
Confidence 788888888888877 777777776653
No 393
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=25.69 E-value=2.4e+02 Score=19.68 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=39.6
Q ss_pred CCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcC---HHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 42 SGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSS---RDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 42 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~---~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
+.+.-.|..|...+......-......+-.+|..+-..+--.+. .+.+..+-..+...+++++....+.
T Consensus 254 g~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~ea~~~~~ 325 (350)
T cd00896 254 GAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEEAIKHFQ 325 (350)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 44555677887776665443233345566667766433332333 2344444456777789888766553
No 394
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=25.63 E-value=1.4e+02 Score=16.90 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=26.2
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
.||.+.+..+|...|....+..+..+...+.
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~ 46 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 7999999999999998888888877777663
No 395
>PF08485 Polysacc_syn_2C: Polysaccharide biosynthesis protein C-terminal; InterPro: IPR013692 This domain is found to the C terminus of the IPR003869 from INTERPRO domain in bacterial polysaccharide biosynthesis enzymes including the capsule protein CapD [] and several putative epimerases/dehydratases. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=25.57 E-value=91 Score=14.83 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=12.8
Q ss_pred cCCCCCccCHHHHHHHHHhc
Q psy15709 3 DSGKRGTIEKEKVRTILNTL 22 (121)
Q Consensus 3 D~~~~g~i~~~el~~~l~~~ 22 (121)
..++.-.++.+++...|..+
T Consensus 25 nShNT~rL~ve~~k~lLl~L 44 (48)
T PF08485_consen 25 NSHNTERLDVEEMKELLLKL 44 (48)
T ss_pred CCCCccccCHHHHHHHHHhC
Confidence 44556667777777776554
No 396
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=25.46 E-value=1.1e+02 Score=15.79 Aligned_cols=25 Identities=8% Similarity=-0.137 Sum_probs=18.3
Q ss_pred hccCCCCCcCHHHHHHHHhhcCCcC
Q psy15709 76 YDKEETHVSSRDVIVVCHFLRDDDV 100 (121)
Q Consensus 76 ~D~~~~g~i~~~el~~~l~~~~~~~ 100 (121)
....|....+..++..++..+|..+
T Consensus 51 a~~agR~~~~~~Dv~~Al~~~gi~~ 75 (77)
T smart00576 51 AELAGRTEPNLGDVVLALENLGISV 75 (77)
T ss_pred HHHcCCCCCCHHHHHHHHHHhCccc
Confidence 3455666788889998888888654
No 397
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=25.20 E-value=1.3e+02 Score=16.62 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=36.9
Q ss_pred eeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhc-CCcCCHHHHHHHHHh
Q psy15709 46 ISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLR-DDDVQEKELKEAFRL 111 (121)
Q Consensus 46 i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~e~~~~~~~ 111 (121)
|.-.+|.-++..+.. .-+.+++..+-..+-..+...++..++..++... +..-++++++..-..
T Consensus 20 vP~~Dy~PLlALL~r--~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~ 84 (96)
T PF11829_consen 20 VPPTDYVPLLALLRR--RLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRAR 84 (96)
T ss_dssp B-HHHHHHHHHHHTT--TS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHH
T ss_pred CCCCccHHHHHHhcc--cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 666677776666655 3555666666666655555555777777776654 344566776665544
No 398
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=25.13 E-value=72 Score=13.54 Aligned_cols=17 Identities=6% Similarity=-0.347 Sum_probs=12.1
Q ss_pred CcCHHHHHHHHhhcCCc
Q psy15709 83 VSSRDVIVVCHFLRDDD 99 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~ 99 (121)
.++..+|+..|+..|.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~ 19 (35)
T smart00513 3 KLKVSELKDELKKRGLS 19 (35)
T ss_pred cCcHHHHHHHHHHcCCC
Confidence 46677888888877654
No 399
>PF09550 DUF2376: Conserved hypothetical phage protein (DUF2376); InterPro: IPR019056 Gene transfer agents belong to a group of unusual genetic exchange elements []. GTAs are unusual in the sense they have the structure of a small tailed phage, which do not possess typical phage traits such as host cell lysis and infectious transmission of the GTA genes. In the Rhodobacter capsulatus GTA the GTA particles contain random 4.5 kb DNA fragments of the R.capsulatus genome. These DNA fragments can be transmitted to other cells where allelic conversion may occur via homologous recombination. The genes coding for the GTA particles are of two distinct types: the first is a cluster of genes reminiscent of a cryptyic prophage, where a number of the genes have similarity to known phage structural genes; the second type consists of two genes coding for a cellular two-component signal transduction system, which regulates the transcription of the GTA structural gene cluster in a growth phase dependent manner []. This entry is represented by ORFg10.1 (RCAP_rcc01693) of the Gene Transfer Agent (GTA) of Rhodobacter capsulatus [see Fig.1, in ]. The function is not known.
Probab=25.11 E-value=87 Score=14.46 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=15.9
Q ss_pred cCHHHHHHHHhhc---CCcCCHHHHHHHHHhh
Q psy15709 84 SSRDVIVVCHFLR---DDDVQEKELKEAFRLY 112 (121)
Q Consensus 84 i~~~el~~~l~~~---~~~~~~~e~~~~~~~~ 112 (121)
+|..|| .++... ...++..+++.+++.+
T Consensus 11 lTP~El-~a~~g~~~~~~pl~R~~L~~Lm~~~ 41 (43)
T PF09550_consen 11 LTPAEL-RAMLGADAGAAPLDRAELDALMRRF 41 (43)
T ss_pred cCHHHH-HHhcCcccCCCCCCHHHHHHHHHHC
Confidence 566666 333322 1346777777777655
No 400
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=25.04 E-value=1.9e+02 Score=18.41 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=4.6
Q ss_pred HHHHHHHhcCC
Q psy15709 14 KVRTILNTLGH 24 (121)
Q Consensus 14 el~~~l~~~~~ 24 (121)
+|..++.++|+
T Consensus 62 ~f~~~~~~lGv 72 (223)
T PF04157_consen 62 QFQSMCASLGV 72 (223)
T ss_dssp HHHHHHHHHT-
T ss_pred HHHHHHHHcCC
Confidence 44444444444
No 401
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=24.88 E-value=50 Score=19.73 Aligned_cols=13 Identities=23% Similarity=0.199 Sum_probs=7.8
Q ss_pred CCCcCHHHHHHHH
Q psy15709 81 THVSSRDVIVVCH 93 (121)
Q Consensus 81 ~g~i~~~el~~~l 93 (121)
+|.||++||..+=
T Consensus 25 tG~iTPeEFV~AG 37 (145)
T PF03986_consen 25 TGVITPEEFVAAG 37 (145)
T ss_dssp HS---HHHHHHHH
T ss_pred cceeCHHHHHHhh
Confidence 6899999998764
No 402
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=24.87 E-value=2.5e+02 Score=19.62 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=39.4
Q ss_pred CceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcC-HHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 44 DKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSS-RDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 44 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~-~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
..-.|..|...+......-......+-.+|..+-.++--.++ .+.+..+-..+...+++++....+.
T Consensus 263 ~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~~~~i~~l~~r~~l~~s~~ea~~~~~ 330 (353)
T cd05166 263 PTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKIQDLKYVRDALRPQLTDAEATIQFT 330 (353)
T ss_pred CcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCchhHHHHHHHHhCCCCCHHHHHHHHH
Confidence 345677888766555442233345666777776444433444 4455555456777789888766554
No 403
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=24.85 E-value=1e+02 Score=15.19 Aligned_cols=29 Identities=3% Similarity=-0.058 Sum_probs=15.9
Q ss_pred CCCcCHHHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 81 THVSSRDVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
.+.+...++-..+..-+ |+.+++...|..
T Consensus 20 h~~L~E~DL~~L~~kS~--ms~qqVr~WFa~ 48 (56)
T PF11569_consen 20 HKQLQEEDLDELCDKSR--MSYQQVRDWFAE 48 (56)
T ss_dssp T----TTHHHHHHHHTT----HHHHHHHHHH
T ss_pred cCCccHhhHHHHHHHHC--CCHHHHHHHHHH
Confidence 34566667777777666 778888777754
No 404
>PTZ00315 2'-phosphotransferase; Provisional
Probab=24.60 E-value=1.6e+02 Score=22.11 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=29.3
Q ss_pred ccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 77 DKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 77 D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
..+.+|++..+++.+..+.-+..++.+.+..+++.
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ 433 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRD 433 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHc
Confidence 56679999999999988766667899999998874
No 405
>PLN00157 histone H2A; Provisional
Probab=24.48 E-value=1.6e+02 Score=17.36 Aligned_cols=47 Identities=11% Similarity=-0.074 Sum_probs=33.0
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCC
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMS 119 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~ 119 (121)
+.++.+-...-.++...|+++.+..+++ .++|+..+++..-..+.|.
T Consensus 63 EVLELAgnaa~d~kk~RItPrHi~lAI~------nDeEL~~Ll~~vtIa~GGV 109 (132)
T PLN00157 63 EVLELAGNAARDNKKSRIVPRHIQLAVR------NDEELSKLLGGVTIAAGGV 109 (132)
T ss_pred HHHHHHHHHHHhcCCccccHHHHhhccc------CcHHHHHHHcCceecCCcc
Confidence 4566666666666777899988777763 5778888888655555443
No 406
>PF02119 FlgI: Flagellar P-ring protein; InterPro: IPR001782 The flgH, flgI and fliF genes of Salmonella typhimurium encode the major proteins for the L, P and M rings of the flagellar basal body []. In fact, the basal body consists of four rings (L,P,S and M) surrounding the flagellar rod, which is believed to transmit motor rotation to the filament []. The M ring is integral to the inner membrane of the cell, and may be connected to the rod via the S (supramembrane) ring, which lies just distal to it. The L and P rings reside in the outer membrane and periplasmic space, respectively. The sequences of the FlgH, FlgI and FliF gene products have been determined []. FlgH and FlgI, which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space, have typical N-terminal cleaved signal-peptide sequences [, ]. FlgH is predicted to have an extensive beta-sheet structure, in keeping with other outer membrane proteins, and FlgI is thought to have even more beta-structure content []. Several aspects of the DNA sequence of these genes and their surrounds suggest complex regulation of the flagellar gene system.; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009428 bacterial-type flagellum basal body, distal rod, P ring, 0030288 outer membrane-bounded periplasmic space
Probab=24.37 E-value=1.9e+02 Score=20.18 Aligned_cols=31 Identities=6% Similarity=-0.001 Sum_probs=26.8
Q ss_pred CCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhcc
Q psy15709 82 HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114 (121)
Q Consensus 82 g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~ 114 (121)
...+..++..+|..+| .+..++-.+++.+..
T Consensus 301 ~~~tl~~lV~aLN~lg--~~p~DlI~Ilqaik~ 331 (342)
T PF02119_consen 301 EGATLQDLVRALNALG--ATPRDLIAILQAIKA 331 (342)
T ss_pred CCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence 4688999999999999 999999999987643
No 407
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=24.34 E-value=63 Score=23.37 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=31.5
Q ss_pred CCCCccCHHHHH-HHHHhcCCCCCHHHHHHHHHHhccCC
Q psy15709 5 GKRGTIEKEKVR-TILNTLGHFIDDVELETVIDEINVES 42 (121)
Q Consensus 5 ~~~g~i~~~el~-~~l~~~~~~~~~~~~~~~~~~~d~~~ 42 (121)
|=+|+|+..++. .++..+|-..+..-+..++..++.++
T Consensus 381 DiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNG 419 (580)
T COG5083 381 DIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNG 419 (580)
T ss_pred ecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCc
Confidence 346999999987 88888898888888999999887663
No 408
>KOG0903|consensus
Probab=24.23 E-value=3.6e+02 Score=21.28 Aligned_cols=64 Identities=6% Similarity=0.010 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCC----cCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 48 FEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHV----SSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 48 ~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~----i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
|..|..++..-..........+-.+.+.+ ++++|. -....+++....+...+|+++++.++..+
T Consensus 756 FdyfK~L~l~gf~a~RKhadrIv~lvEiM-q~~S~~pCF~aG~~Ti~nL~~RFhLslTEeq~~~lV~~L 823 (847)
T KOG0903|consen 756 FDYFKSLMLQGFMALRKHADRIVLLVEIM-QDGSGMPCFRAGERTIQNLRQRFHLSLTEEQCQDLVLSL 823 (847)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCcccccChHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44555443322221133345555666666 334543 22467777777888889999999887653
No 409
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=24.21 E-value=1.8e+02 Score=17.86 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=28.5
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
..+-.+++... +.-|+|+.+-+..+-..+| ++..++..++..+
T Consensus 36 ~~li~~L~~iQ-~~~GyIp~e~~~~iA~~l~--v~~a~V~gVatFY 78 (169)
T PRK07571 36 DALIEVLHKAQ-ELFGYLERDLLLYVARQLK--LPLSRVYGVATFY 78 (169)
T ss_pred HHHHHHHHHHH-HHcCCCCHHHHHHHHHHhC--cCHHHHHHHHHHc
Confidence 34555555553 3468899988888888888 6666666665543
No 410
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.20 E-value=1.1e+02 Score=17.69 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=27.2
Q ss_pred HhhccCCCCCcCHHHHHHHHhh--cCCcCCHHHHHHHHHh
Q psy15709 74 RLYDKEETHVSSRDVIVVCHFL--RDDDVQEKELKEAFRL 111 (121)
Q Consensus 74 ~~~D~~~~g~i~~~el~~~l~~--~~~~~~~~e~~~~~~~ 111 (121)
..|+++....||..|+..+-.- .-..+++++++.++..
T Consensus 75 ~~y~K~~~~nis~~El~~lk~la~~l~~~~~~~l~~~i~~ 114 (120)
T PF06296_consen 75 YIYAKNEKANISDKELKALKKLAKELLNLSEEQLETLIAN 114 (120)
T ss_pred EEEcccccCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHc
Confidence 4568888889999998665442 2235889999888753
No 411
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=24.17 E-value=1.9e+02 Score=18.03 Aligned_cols=81 Identities=16% Similarity=0.111 Sum_probs=43.0
Q ss_pred CCccCHHHHH-HHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcC
Q psy15709 7 RGTIEKEKVR-TILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSS 85 (121)
Q Consensus 7 ~g~i~~~el~-~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~ 85 (121)
+|+|+..+.. .+++.+.. +.+..+...+ -.|.+++.+.+..+....... ..+++...+..- -.=.-.
T Consensus 7 DgTit~~d~~~~~~~~~~~----~~~~~~~~~~---~~g~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~~---~~l~pg 74 (214)
T TIGR03333 7 DGTITNNDNIISIMKQFAP----PEWEALKDGV---LSKTLSIQEGVGRMFGLLPSS--LKEEITSFVLET---AEIREG 74 (214)
T ss_pred CCCCCcchhHHHHHHHhCc----HHHHHHHHHH---HcCCccHHHHHHHHHhhCCCc--hHHHHHHHHHhc---Cccccc
Confidence 6889988874 44554321 3444444443 236899999988766665532 122343333321 111223
Q ss_pred HHHHHHHHhhcCCc
Q psy15709 86 RDVIVVCHFLRDDD 99 (121)
Q Consensus 86 ~~el~~~l~~~~~~ 99 (121)
..++...+++.|.+
T Consensus 75 ~~e~l~~l~~~g~~ 88 (214)
T TIGR03333 75 FREFVAFINEHGIP 88 (214)
T ss_pred HHHHHHHHHHCCCe
Confidence 45666666665543
No 412
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=24.05 E-value=1.4e+02 Score=21.94 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=38.0
Q ss_pred CCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCC-CceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCC
Q psy15709 7 RGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESG-DKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETH 82 (121)
Q Consensus 7 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 82 (121)
.-.++..+++.++.++|.....++--..|.. +.+. ..+.|..++..+..-.. ....++.+|..++.=.++
T Consensus 499 ~~~lsdsd~~a~l~slgl~~dk~egi~~F~~--~a~s~~gv~yl~v~~~i~sel~----D~d~v~~~~~~f~diad~ 569 (612)
T COG5069 499 GCGLSDSDLCAWLGSLGLKGDKEEGIRSFGD--PAGSVSGVFYLDVLKGIHSELV----DYDLVTRGFTEFDDIADA 569 (612)
T ss_pred CCCCCHHHHHHHHHHhccccCCccceeeccC--CccccccchHHHHHHHHhhhhc----ChhhhhhhHHHHHHhhhh
Confidence 3457888888888888876554443333322 2222 13566666665544322 335566666666433333
No 413
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=24.04 E-value=1.5e+02 Score=16.66 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=16.7
Q ss_pred CCCCCcCHHHHHHHHhhcCCcCCHHHHHHHH
Q psy15709 79 EETHVSSRDVIVVCHFLRDDDVQEKELKEAF 109 (121)
Q Consensus 79 ~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~ 109 (121)
..+|.++..+++.+....| ++..++..++
T Consensus 60 ~~~~~~~~~~i~~~r~~~g--ltq~~lA~~l 88 (127)
T TIGR03830 60 KVDGLLTPPEIRRIRKKLG--LSQREAAELL 88 (127)
T ss_pred HccCCcCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 3455666666666665555 5555554443
No 414
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=24.03 E-value=2.6e+02 Score=19.59 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=39.7
Q ss_pred eeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCH-HHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 46 ISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSR-DVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 46 i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~-~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
-.|..|...+..-...-......+-.+|..+-..+=-.+.. .++..+-..+...+++++....|..
T Consensus 265 ~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~~~~i~~l~~r~~l~~sd~ea~~~f~~ 331 (353)
T cd05176 265 IRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTGVQDLKYVYDALQPQTTDAEATIFFTR 331 (353)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCCchHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 46888888776654432334455667777774433233432 3455554566777899888776643
No 415
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=24.00 E-value=1.6e+02 Score=17.11 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=17.7
Q ss_pred HHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 87 DVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 87 ~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
+.+.+-++-.++..|++|+++++..
T Consensus 117 ~~i~Rq~~i~~~~~tdeei~~~~~~ 141 (151)
T cd00179 117 ERIQRQLEITGGEATDEELEDMLES 141 (151)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHc
Confidence 3444445556788999999988875
No 416
>PLN00156 histone H2AX; Provisional
Probab=23.70 E-value=1.7e+02 Score=17.42 Aligned_cols=47 Identities=11% Similarity=-0.048 Sum_probs=33.2
Q ss_pred HHHHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhhccCCCCC
Q psy15709 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMS 119 (121)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~d~~~dg~ 119 (121)
+.++.+-...-.++...|+++.+..+++ .++|+..+++..-+...|.
T Consensus 66 EVLELAgNaa~d~kk~RItPrHi~lAIr------nDeEL~~Ll~~vTIa~GGV 112 (139)
T PLN00156 66 EVLELAGNAARDNKKNRIVPRHIQLAVR------NDEELSKLLGSVTIAAGGV 112 (139)
T ss_pred HHHHHHHHHHHHcCCCcCcHHHHHhhcc------CcHHHHHHHCCCccCCCcc
Confidence 4566666666666777899988877763 5778888887655555443
No 417
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=23.64 E-value=2.2e+02 Score=18.67 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=25.8
Q ss_pred eHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhc
Q psy15709 47 SFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLR 96 (121)
Q Consensus 47 ~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 96 (121)
.+..|+.+++....+.+.....-..+|..+...|. .++.+++..++...
T Consensus 7 e~~~FL~W~c~~V~~~NvLS~~El~~~~~L~~~Gk-iLeg~~Ld~aL~~~ 55 (256)
T PF14932_consen 7 EFESFLDWFCSNVNESNVLSEEELQAFEELQKSGK-ILEGEALDEALKTI 55 (256)
T ss_pred cHHHHHHHHHccCChhccCCHHHHHHHHHHHHcCC-cCCHHHHHHHHHHc
Confidence 34555555554333222223334455666666555 66777776666654
No 418
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=23.49 E-value=1.1e+02 Score=20.24 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=23.0
Q ss_pred cCCCCCcCHHHHHHHHhhcCC---cCCHHHHHHHHHhh
Q psy15709 78 KEETHVSSRDVIVVCHFLRDD---DVQEKELKEAFRLY 112 (121)
Q Consensus 78 ~~~~g~i~~~el~~~l~~~~~---~~~~~e~~~~~~~~ 112 (121)
.+|-..++.+|++.+|..-|. .++.+++...+..|
T Consensus 214 ~eGv~~Ls~~EL~~Ac~~RGl~~~~~s~~~lr~~L~~W 251 (268)
T PF07766_consen 214 REGVDSLSEEELQDACYERGLRSTGLSEEELREWLKQW 251 (268)
T ss_dssp HH-GGGS-HHHHHHHHHHTT---TT--HHHHHHHHHHH
T ss_pred HhccccCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHH
Confidence 335558999999999998775 46888887776654
No 419
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=23.36 E-value=91 Score=14.08 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=13.7
Q ss_pred CCCCCccCHHHHHHHHHhc
Q psy15709 4 SGKRGTIEKEKVRTILNTL 22 (121)
Q Consensus 4 ~~~~g~i~~~el~~~l~~~ 22 (121)
....|.++.++++.+++.-
T Consensus 8 g~~~GP~s~~el~~l~~~g 26 (45)
T PF14237_consen 8 GQQQGPFSLEELRQLISSG 26 (45)
T ss_pred CeEECCcCHHHHHHHHHcC
Confidence 3446788888888887753
No 420
>KOG1954|consensus
Probab=23.30 E-value=2e+02 Score=20.62 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred CCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHH
Q psy15709 43 GDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVC 92 (121)
Q Consensus 43 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~ 92 (121)
+|+++=..-...+.....++ ..+..+++..|.|.+|.++.+||.-+
T Consensus 457 ~gk~sg~~ak~~mv~sklpn----svlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 457 NGKLSGRNAKKEMVKSKLPN----SVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred CceeccchhHHHHHhccCch----hHHHhhhhhhcCCcccCcCHHHHHHH
No 421
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=23.22 E-value=70 Score=19.12 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=6.5
Q ss_pred CCcCCHHHHHHHH
Q psy15709 97 DDDVQEKELKEAF 109 (121)
Q Consensus 97 ~~~~~~~e~~~~~ 109 (121)
+..+|++||+.||
T Consensus 84 NrpLTDEELD~mL 96 (144)
T PF08920_consen 84 NRPLTDEELDAML 96 (144)
T ss_dssp TS-S-HHHHHHTS
T ss_pred cCcCCHHHHHHhC
Confidence 4456666666655
No 422
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=23.21 E-value=1.4e+02 Score=16.07 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=19.9
Q ss_pred CceeHHHHHHHHHhhccC--------------chhhHHHHHHHHHhhc
Q psy15709 44 DKISFEEFLQVACHFLRD--------------DDVLEKELKEAFRLYD 77 (121)
Q Consensus 44 g~i~~~ef~~~~~~~~~~--------------~~~~~~~~~~~f~~~D 77 (121)
+..++.+|+.++.....- ...+.+.+..+++.+|
T Consensus 24 ~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~ 71 (87)
T cd01612 24 ATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFG 71 (87)
T ss_pred CCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcC
Confidence 446777777777655441 0224456677777774
No 423
>cd01102 Link_Domain The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor necrosis factor-stimulated gene-6. TSG-6 has a strong anti-inflammatory effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. This group also contains the link domains of the chondroitin sulfate proteoglycan core proteins (CSPG) including aggrecan, versican, neurocan, and brevican and the link domains of the vertebrate HAPLN (HA and proteoglycan binding link) protein family. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates in which other CSPGs substitute for aggregan might contribute to the structural integrity of many different tissues. Members of
Probab=23.20 E-value=1.3e+02 Score=16.43 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=24.9
Q ss_pred HHhhccCCCCCcCHHHHHHHHhhcCCcC-CHHHHHHHHH
Q psy15709 73 FRLYDKEETHVSSRDVIVVCHFLRDDDV-QEKELKEAFR 110 (121)
Q Consensus 73 f~~~D~~~~g~i~~~el~~~l~~~~~~~-~~~e~~~~~~ 110 (121)
|..-.+++.-.++..|=++++.+.|-.| |.+++....+
T Consensus 3 Fh~~s~~g~y~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~ 41 (92)
T cd01102 3 FHLESQNGRYKLTFAEAALACKARGAHLATPGQLEAAWQ 41 (92)
T ss_pred EEecCCCCCcccCHHHHHHHHHHcCCEeCCHHHHHHHHH
Confidence 3333455666788888888888877665 6666655544
No 424
>TIGR02216 phage_TIGR02216 phage conserved hypothetical protein. This model describes a family of proteins found exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA.
Probab=23.09 E-value=1.2e+02 Score=15.23 Aligned_cols=29 Identities=3% Similarity=-0.024 Sum_probs=21.0
Q ss_pred cCHHHHHHHHhhc----CCcCCHHHHHHHHHhh
Q psy15709 84 SSRDVIVVCHFLR----DDDVQEKELKEAFRLY 112 (121)
Q Consensus 84 i~~~el~~~l~~~----~~~~~~~e~~~~~~~~ 112 (121)
+|..|+..++... ...++...+++++..+
T Consensus 25 lTP~EL~~~lg~~~~~~~apl~Ra~Ld~Lm~~f 57 (60)
T TIGR02216 25 LTPAELAAAIAGLQGAAAAPLDRAALDALLAAW 57 (60)
T ss_pred CCHHHHHHHhCCccCCCCCCCCHHHHHHHHHHC
Confidence 6778888887731 2357888888888776
No 425
>PF13835 DUF4194: Domain of unknown function (DUF4194)
Probab=23.01 E-value=1.8e+02 Score=17.42 Aligned_cols=44 Identities=23% Similarity=0.111 Sum_probs=29.1
Q ss_pred HHHHHHhhc---cCCCCCcCHHHHHHHHhhcCC-----cCCHHHHHHHHHhh
Q psy15709 69 LKEAFRLYD---KEETHVSSRDVIVVCHFLRDD-----DVQEKELKEAFRLY 112 (121)
Q Consensus 69 ~~~~f~~~D---~~~~g~i~~~el~~~l~~~~~-----~~~~~e~~~~~~~~ 112 (121)
++..+.... .++.-.|+.+|+...+..+.. .....+++.++..+
T Consensus 83 LR~~y~e~~~~~~~~~~~v~~~ei~e~~~~~~~~~~d~~~~~~~~~~~l~~l 134 (166)
T PF13835_consen 83 LRLLYEEKESLSGSERVVVTREEIVEKLESFLPESRDEAPFKKRLDAALRRL 134 (166)
T ss_pred HHHHHHHHhccCCCCcEEEeHHHHHHHHHHHccccccccchHHHHHHHHHHH
Confidence 344444443 445557999999999988644 45677777777654
No 426
>KOG2278|consensus
Probab=22.97 E-value=1.1e+02 Score=19.05 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=22.6
Q ss_pred CCCCCccCHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q psy15709 4 SGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEIN 39 (121)
Q Consensus 4 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 39 (121)
.+++|++...++.+.=+.-+...+-+++..++..-+
T Consensus 29 m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~nd 64 (207)
T KOG2278|consen 29 MRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRND 64 (207)
T ss_pred ccCCCceEHHHHhccchhcccCCcHHHHHHHHhccc
Confidence 356777777777665444455666677777666543
No 427
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=22.92 E-value=1.4e+02 Score=16.01 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=47.1
Q ss_pred ccCHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHH
Q psy15709 9 TIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDV 88 (121)
Q Consensus 9 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e 88 (121)
.++..++..++..+.....+.+=..+....-.+.. .++..+..+++..+.-. ...-..++.++..+ ++++.
T Consensus 4 ~m~~~~f~~~~~~lk~~~fd~dkl~~l~~~~~~~~-~~T~~Qv~~il~~f~fd-~~kl~~lk~l~p~i-------~D~~n 74 (95)
T PF14771_consen 4 PMSDNDFEQFLEQLKKESFDSDKLKVLEAAAKTNN-CFTCAQVKQILSLFSFD-NDKLKALKLLYPYI-------VDPQN 74 (95)
T ss_pred CCCHHHHHHHHHHHHcCCCcHHHHHHHHHHHhcCC-ceeHHHHHHHHHHcCCC-HHHHHHHHHHhhhc-------cCHHH
Confidence 35666677776666543333333333333322222 58999999888776554 22333334443332 44445
Q ss_pred HHHHHhhcCCcCCHHHHHHH
Q psy15709 89 IVVCHFLRDDDVQEKELKEA 108 (121)
Q Consensus 89 l~~~l~~~~~~~~~~e~~~~ 108 (121)
...+...+....+.+++..+
T Consensus 75 ~~~i~~~f~f~s~k~~~~~~ 94 (95)
T PF14771_consen 75 YYTIIDAFSFSSDKDKAREI 94 (95)
T ss_pred HHHHHHHhcCcccHHHHHHh
Confidence 55555555544555555543
No 428
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=22.71 E-value=1.3e+02 Score=15.45 Aligned_cols=40 Identities=10% Similarity=-0.029 Sum_probs=24.6
Q ss_pred HHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 71 EAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 71 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
.+|=.|=.+..+.|....+..++..+| +++.-+...+..+
T Consensus 8 tl~Gdy~~~~g~~i~~~~Li~ll~~~G--v~e~avR~alsRl 47 (70)
T PF07848_consen 8 TLLGDYLRPRGGWIWVASLIRLLAAFG--VSESAVRTALSRL 47 (70)
T ss_dssp HHHHHHCCTTTS-EEHHHHHHHHCCTT----HHHHHHHHHHH
T ss_pred HHHHHHhccCCCceeHHHHHHHHHHcC--CChHHHHHHHHHH
Confidence 334344455667788888888888888 7777666666554
No 429
>COG5562 Phage envelope protein [General function prediction only]
Probab=22.61 E-value=48 Score=19.58 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=9.9
Q ss_pred CCCCccCHHHHHHHHHhcC
Q psy15709 5 GKRGTIEKEKVRTILNTLG 23 (121)
Q Consensus 5 ~~~g~i~~~el~~~l~~~~ 23 (121)
+.+|..++++++..+...|
T Consensus 84 ~qsGqttF~ef~~~la~AG 102 (137)
T COG5562 84 HQSGQTTFEEFCSALAEAG 102 (137)
T ss_pred HhcCCccHHHHHHHHHhCC
Confidence 3445555555555555444
No 430
>COG3327 PaaX Phenylacetic acid-responsive transcriptional repressor [Transcription]
Probab=22.58 E-value=1.9e+02 Score=19.35 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=15.2
Q ss_pred CCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhc
Q psy15709 42 SGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYD 77 (121)
Q Consensus 42 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D 77 (121)
..|.|...+.++++..+ .-.+..++.+...+.
T Consensus 22 ~Gg~Iw~gsLI~il~~f----G~sE~~vRaal~Rm~ 53 (291)
T COG3327 22 RGGWIWIGSLIQILAEF----GISETTVRAALSRMV 53 (291)
T ss_pred CCCeeeHHHHHHHHHHc----CccHHHHHHHHHHHH
Confidence 34455555555555544 223344444444443
No 431
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=22.55 E-value=3e+02 Score=19.83 Aligned_cols=28 Identities=7% Similarity=0.317 Sum_probs=18.7
Q ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHhhcc
Q psy15709 30 ELETVIDEINVESGDKISFEEFLQVACHFLR 60 (121)
Q Consensus 30 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 60 (121)
+.+.+...+ ..|..++.+|...+..+.+
T Consensus 314 ~~~~~~~k~---~~~~f~l~D~~~q~~~i~k 341 (429)
T TIGR01425 314 NEKALIEKL---KEGTFTLRDMYEQFQNLLK 341 (429)
T ss_pred HHHHHHHHH---HhCCCCHHHHHHHHHHHHh
Confidence 344444444 3478999999988777655
No 432
>PRK04387 hypothetical protein; Provisional
Probab=22.40 E-value=1.5e+02 Score=16.22 Aligned_cols=69 Identities=16% Similarity=0.071 Sum_probs=41.5
Q ss_pred CCCCHHHHHHH---HHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHh
Q psy15709 24 HFIDDVELETV---IDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHF 94 (121)
Q Consensus 24 ~~~~~~~~~~~---~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 94 (121)
.+.+.+++-.+ |..+...-...|..++|+..+..+..- .+...+=+.+++.|.. .+|+-...-++.+-.
T Consensus 9 ~dWsteEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~V-VpsK~EEKql~reFe~-~SGYS~Y~~Vk~ak~ 80 (90)
T PRK04387 9 LDWSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEI-VPSKAEEKQIDREFEK-VSGYSIYRAVQKAKE 80 (90)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCChHHHHHHHHHHHH-HcCCcHHHHHHHHHh
Confidence 34455555433 333333334568888888888777663 2344555677777744 478877776666654
No 433
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=22.37 E-value=47 Score=17.26 Aligned_cols=9 Identities=0% Similarity=-0.016 Sum_probs=4.2
Q ss_pred cCHHHHHHH
Q psy15709 84 SSRDVIVVC 92 (121)
Q Consensus 84 i~~~el~~~ 92 (121)
++.+|+..+
T Consensus 12 Lt~~el~~l 20 (77)
T cd00045 12 LTSEELEAL 20 (77)
T ss_pred cCHHHHHHH
Confidence 444554443
No 434
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=22.32 E-value=1.8e+02 Score=17.09 Aligned_cols=26 Identities=15% Similarity=0.044 Sum_probs=14.2
Q ss_pred cCHHHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 84 SSRDVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 84 i~~~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
.+..|++.+|...| .+++|+..+.+.
T Consensus 99 msd~el~~~l~~~g--~~~EE~rRL~~A 124 (129)
T PF13543_consen 99 MSDEELKEILNRCG--AREEECRRLCRA 124 (129)
T ss_pred CCHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 44555566666555 455665555443
No 435
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=22.29 E-value=85 Score=15.33 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=6.0
Q ss_pred cCCHHHHHHHHHh
Q psy15709 99 DVQEKELKEAFRL 111 (121)
Q Consensus 99 ~~~~~e~~~~~~~ 111 (121)
.+|++|++.++.-
T Consensus 16 ~ft~~El~~i~~F 28 (64)
T PF09832_consen 16 HFTEEELDAILAF 28 (64)
T ss_dssp HS-HHHHHHHHHH
T ss_pred HCCHHHHHHHHHH
Confidence 3455555555443
No 436
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=22.19 E-value=95 Score=18.70 Aligned_cols=27 Identities=4% Similarity=-0.138 Sum_probs=19.0
Q ss_pred HHHHHHHhhcCCcCCHHHHHHHHHhhc
Q psy15709 87 DVIVVCHFLRDDDVQEKELKEAFRLYD 113 (121)
Q Consensus 87 ~el~~~l~~~~~~~~~~e~~~~~~~~d 113 (121)
.+.+++|..+-..++.++.+.++..++
T Consensus 65 ~~~~~flk~i~e~l~~ed~~~l~~~le 91 (149)
T COG1325 65 REARKFLKKLRELLGEEDREYLLETLE 91 (149)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHhhH
Confidence 667777777766777777777766554
No 437
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=22.08 E-value=1.1e+02 Score=14.75 Aligned_cols=10 Identities=40% Similarity=0.637 Sum_probs=4.3
Q ss_pred CCHHHHHHHH
Q psy15709 100 VQEKELKEAF 109 (121)
Q Consensus 100 ~~~~e~~~~~ 109 (121)
+++++++.++
T Consensus 38 lt~ee~d~ll 47 (55)
T PF10415_consen 38 LTEEELDELL 47 (55)
T ss_dssp S-HHHHHHHT
T ss_pred CCHHHHHHHc
Confidence 3455554444
No 438
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=22.06 E-value=1.4e+02 Score=19.77 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=17.3
Q ss_pred CcCHHHHHHHHhhcCCcCCHHHHHHHHHh
Q psy15709 83 VSSRDVIVVCHFLRDDDVQEKELKEAFRL 111 (121)
Q Consensus 83 ~i~~~el~~~l~~~~~~~~~~e~~~~~~~ 111 (121)
.-+.+|++.+|...| ++++.++.+++.
T Consensus 9 ~~s~~eV~~~L~~ag--i~~~~i~~F~~~ 35 (250)
T PF14133_consen 9 KESQEEVKKALKSAG--ISKENIDNFFEW 35 (250)
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 345667777777666 666666666554
No 439
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=22.01 E-value=1.3e+02 Score=16.20 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=11.3
Q ss_pred cCHHHHHHHHhhcCCcCCHHHHHHH
Q psy15709 84 SSRDVIVVCHFLRDDDVQEKELKEA 108 (121)
Q Consensus 84 i~~~el~~~l~~~~~~~~~~e~~~~ 108 (121)
++..||..+| ..+|++++..+
T Consensus 9 m~v~efn~~L----~~lt~~q~~~l 29 (92)
T PF03131_consen 9 MSVREFNRLL----RGLTEEQIAEL 29 (92)
T ss_dssp S-HHHHHHHC----TTS-HHHHHHH
T ss_pred CCHHHHHHHH----HcCCHHHHHHH
Confidence 5566666666 34666666543
No 440
>PF08812 YtxC: YtxC-like family; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis [].
Probab=21.85 E-value=48 Score=21.23 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=20.9
Q ss_pred HHHhhccCCCCCcCHHHHHHHHhh-cCCcCCHHH
Q psy15709 72 AFRLYDKEETHVSSRDVIVVCHFL-RDDDVQEKE 104 (121)
Q Consensus 72 ~f~~~D~~~~g~i~~~el~~~l~~-~~~~~~~~e 104 (121)
.|..+|.++. .|+.+++..++.. ....++.++
T Consensus 148 ~f~l~D~~~~-~i~~~~~~~~~~~~~~~~i~~eD 180 (221)
T PF08812_consen 148 SFILYDEEGK-PISNEELEEYIDELFDQEINYED 180 (221)
T ss_pred cEEEEcCCCC-CCCHHHHHHHHHHhhcCCCcHHH
Confidence 4677776655 6888888888877 333444443
No 441
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=21.82 E-value=1.5e+02 Score=15.96 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=5.7
Q ss_pred CceeHHHHHHHH
Q psy15709 44 DKISFEEFLQVA 55 (121)
Q Consensus 44 g~i~~~ef~~~~ 55 (121)
|.-.|..|+..+
T Consensus 64 G~~AF~~F~~aL 75 (90)
T cd08332 64 GPRAFSAFCEAL 75 (90)
T ss_pred ChhHHHHHHHHH
Confidence 334455555544
No 442
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=21.80 E-value=2e+02 Score=17.37 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=25.9
Q ss_pred HHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 70 KEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
-.+.+... +.-|+|+.+-+..+-..+| ++..++..++..+
T Consensus 26 i~~L~~vQ-~~~G~Ip~e~~~~iA~~l~--v~~~~V~~vatFY 65 (156)
T PRK05988 26 LPILHAIQ-DEFGYVPEDAVPVIAEALN--LSRAEVHGVITFY 65 (156)
T ss_pred HHHHHHHH-HHcCCCCHHHHHHHHHHhC--CCHHHHHHHHHHh
Confidence 33344442 3467888888888888888 6666666665543
No 443
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein. gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module.
Probab=21.70 E-value=1.5e+02 Score=15.97 Aligned_cols=23 Identities=9% Similarity=-0.073 Sum_probs=17.6
Q ss_pred CCCCCcCHHHHHHHHhhcCCcCC
Q psy15709 79 EETHVSSRDVIVVCHFLRDDDVQ 101 (121)
Q Consensus 79 ~~~g~i~~~el~~~l~~~~~~~~ 101 (121)
.+.+..+..-+.+++..+|..++
T Consensus 65 ~g~~~Ps~~tL~kI~~aLgi~l~ 87 (89)
T TIGR02684 65 SGKGNPTFDTILKVTKALGLKLT 87 (89)
T ss_pred cCCCCCCHHHHHHHHHHcCCcee
Confidence 45567888889999888886653
No 444
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=21.68 E-value=3e+02 Score=19.41 Aligned_cols=78 Identities=12% Similarity=0.040 Sum_probs=45.2
Q ss_pred HHHHHhcc-CCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcC-HHHHHHHHhhcCCcCCHHHHHHHHH
Q psy15709 33 TVIDEINV-ESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSS-RDVIVVCHFLRDDDVQEKELKEAFR 110 (121)
Q Consensus 33 ~~~~~~d~-~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~-~~el~~~l~~~~~~~~~~e~~~~~~ 110 (121)
.+...... .+.++-.|..|...+......-......+-.+|..+-..+=-.++ .+++..+-..+...+++++....|.
T Consensus 262 e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l~~~~~i~~l~~~~~l~~se~eA~~~f~ 341 (365)
T cd00894 262 DFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKSEEDAKKHFL 341 (365)
T ss_pred HHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcchHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34444432 345567788898887665543233345566677776443333344 3445544446777789988766553
No 445
>cd08341 DED_Caspase_10_repeat1 Death effector domain, repeat 1, of Caspase-10. Death effector domain (DED) found in caspase-10, repeat 1. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-10 is an initiator of death receptor mediated apoptosis. Together with FADD, caspase-8 and the pseudo-caspase c-FLIP, it forms the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. It contains two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other m
Probab=21.64 E-value=78 Score=16.85 Aligned_cols=18 Identities=6% Similarity=0.156 Sum_probs=8.0
Q ss_pred HHHHhhcCCcCCHHHHHH
Q psy15709 90 VVCHFLRDDDVQEKELKE 107 (121)
Q Consensus 90 ~~~l~~~~~~~~~~e~~~ 107 (121)
+.+|-+.+..++.+++..
T Consensus 4 r~lL~~Ise~L~~~el~~ 21 (82)
T cd08341 4 NQKLLIIDEGLGVEDIEA 21 (82)
T ss_pred HHHHHHHHhhcCHHHHHH
Confidence 344444444444444443
No 446
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=21.59 E-value=1.9e+02 Score=17.15 Aligned_cols=48 Identities=17% Similarity=0.012 Sum_probs=23.6
Q ss_pred CceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccC-CCCCcCHHHHHHHHhh
Q psy15709 44 DKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKE-ETHVSSRDVIVVCHFL 95 (121)
Q Consensus 44 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~-~~g~i~~~el~~~l~~ 95 (121)
+.+||+-++.-+..- ...-..+..+.+..|.+ +...-...-|..++.-
T Consensus 60 ~~cTFe~ll~~f~L~----dpaL~~la~IV~~aD~~~~~~~peaaGl~ai~~G 108 (135)
T PF09828_consen 60 DRCTFEVLLASFGLD----DPALARLAAIVRGADTGRGDLAPEAAGLEAISAG 108 (135)
T ss_pred CcccHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH
Confidence 355666555554331 23445556666666665 3333334444544443
No 447
>cd02655 RNAP_beta'_C Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain. Bacterial RNA polymerase (RNAP) is a large multi-subunit complex responsible for the synthesis of all RNAs in the cell. This family also includes the eukaryotic plastid-encoded RNAP beta" subunit. Structure studies suggest that RNAP complexes from different organisms share a crab-claw-shape structure with two pincers defining a central cleft. Beta' and beta, the largest and the second largest subunits of bacterial RNAP, each makes up one pincer and part of the base of the cleft. The C-terminal domain includes a G loop that forms part of the floor of the downstream DNA-binding cavity. The position of the G loop may determine the switch of the bridge helix between flipped-out and normal alpha-helical conformations.
Probab=21.58 E-value=1.7e+02 Score=18.66 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=19.3
Q ss_pred CHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 85 SRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 85 ~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
=.+|++.+++..|..+++..++-+.+++
T Consensus 74 iv~EIq~Vy~~qGV~I~dKHielIv~qM 101 (204)
T cd02655 74 LVEEIQKVYRSQGVNINDKHIEIIVRQM 101 (204)
T ss_pred HHHHHHHHHHhcCeeecHHHHHHHHHHH
Confidence 3556677777777777777777666655
No 448
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=21.57 E-value=4.4e+02 Score=21.32 Aligned_cols=104 Identities=11% Similarity=0.135 Sum_probs=56.5
Q ss_pred ccCHHHHHHHHH------hc--CCCCCHHHHHHHHHHh-------ccC-CCCceeHHHHHHHHHhhccCchhhHHHHHHH
Q psy15709 9 TIEKEKVRTILN------TL--GHFIDDVELETVIDEI-------NVE-SGDKISFEEFLQVACHFLRDDDVLEKELKEA 72 (121)
Q Consensus 9 ~i~~~el~~~l~------~~--~~~~~~~~~~~~~~~~-------d~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~ 72 (121)
.++..+|..+++ ++ .-..+.+++......+ ..+ ..|.+++.......... .......+..+
T Consensus 767 ~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~sl~~~~~DpetG~iD~d~~~~G~s~~---~r~~~~~~~~~ 843 (915)
T PTZ00111 767 YVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTN---KMQQLNQMYEQ 843 (915)
T ss_pred cccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHHHHhhhcccccCCcccceeeccCCcHH---HHHHHHHHHHH
Confidence 588999987776 22 2235555554433322 112 46778765553222111 01222233333
Q ss_pred HHhh-----ccCCCCCcCHHHHHHHHhh-------cCCcCCHHHHHHHHHhhccC
Q psy15709 73 FRLY-----DKEETHVSSRDVIVVCHFL-------RDDDVQEKELKEAFRLYDKE 115 (121)
Q Consensus 73 f~~~-----D~~~~g~i~~~el~~~l~~-------~~~~~~~~e~~~~~~~~d~~ 115 (121)
+..+ ...+.+.++.+++...+.+ ....++.++++++++.+-..
T Consensus 844 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~ 898 (915)
T PTZ00111 844 VLSVLTRSSNQDSNKSLDLNEVLSLCHKTFKDNRDHKDGEIYKLISEVLNKMVQE 898 (915)
T ss_pred HHHHHHhhhccccCCceeHHHHHHHHHhhccccchhccCCCHHHHHHHHHHHHhC
Confidence 3322 1234467999999988742 22348999999999887544
No 449
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=21.49 E-value=1.1e+02 Score=14.21 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=12.3
Q ss_pred ccCHHHHHHHHHhcCCC
Q psy15709 9 TIEKEKVRTILNTLGHF 25 (121)
Q Consensus 9 ~i~~~el~~~l~~~~~~ 25 (121)
.++-.|++..|.+.|++
T Consensus 5 ~LSd~eL~~~L~~~G~~ 21 (44)
T smart00540 5 RLSDAELRAELKQYGLP 21 (44)
T ss_pred HcCHHHHHHHHHHcCCC
Confidence 46677788888877764
No 450
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=21.47 E-value=2.1e+02 Score=19.75 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=19.7
Q ss_pred cCHHHHHHHHhhcCC--cCCHHHHHHHHHhh
Q psy15709 84 SSRDVIVVCHFLRDD--DVQEKELKEAFRLY 112 (121)
Q Consensus 84 i~~~el~~~l~~~~~--~~~~~e~~~~~~~~ 112 (121)
.+.+++-.+++.+++ .++.++++.++++.
T Consensus 203 fs~~Dld~aL~~~~E~lDIdrddLe~llr~~ 233 (382)
T COG3448 203 FSSEDLDAALQRLGETLDIDRDDLERLLRET 233 (382)
T ss_pred CCHHHHHHHHHhcCceecCCHHHHHHHHHHH
Confidence 566777777777775 45677777766543
No 451
>PF04552 Sigma54_DBD: Sigma-54, DNA binding domain; InterPro: IPR007634 This DNA-binding domain is based on peptide fragmentation data. This domain is proximal to DNA in the promoter/holoenzyme complex. Furthermore, this region contains a putative helix-turn-helix motif. At the C terminus, there is a highly conserved region known as the RpoN box and is the signature of the sigma-54 proteins [].; PDB: 2AHQ_A 2O9L_A 2O8K_A.
Probab=21.42 E-value=66 Score=19.55 Aligned_cols=24 Identities=8% Similarity=-0.058 Sum_probs=10.4
Q ss_pred CCcCHHHHHHHHhhcCCcCCHHHH
Q psy15709 82 HVSSRDVIVVCHFLRDDDVQEKEL 105 (121)
Q Consensus 82 g~i~~~el~~~l~~~~~~~~~~e~ 105 (121)
.-+|-+++...|...|+.++.--+
T Consensus 120 ~PlSD~~i~~~L~~~gi~isRRTV 143 (160)
T PF04552_consen 120 KPLSDQEIAELLKEEGIKISRRTV 143 (160)
T ss_dssp S---HHHHHHHHTTTTS---HHHH
T ss_pred CCCCHHHHHHHHHHcCCCccHHHH
Confidence 456666666666666655554333
No 452
>smart00153 VHP Villin headpiece domain.
Probab=21.28 E-value=97 Score=13.61 Aligned_cols=11 Identities=9% Similarity=-0.130 Sum_probs=6.6
Q ss_pred CcCHHHHHHHH
Q psy15709 83 VSSRDVIVVCH 93 (121)
Q Consensus 83 ~i~~~el~~~l 93 (121)
+++.+||..++
T Consensus 1 yLsdeeF~~vf 11 (36)
T smart00153 1 YLSDEDFEEVF 11 (36)
T ss_pred CCCHHHHHHHH
Confidence 35566666665
No 453
>cd08338 DED_PEA15 Death Effector Domain of Astrocyte phosphoprotein PEA-15. Death Effector Domain (DED) similar to that found in PEA-15 (Astrocyte phosphoprotein PEA-15). PEA-15 is a multifunctional phosphoprotein that modulates signaling pathways, like the ERK MAP kinase cascade by binding to ERK and changing its subcellular localization. It has been implicated in apoptosis, cell proliferation, and glucose metabolism. It does not possess enzymatic activity and mainly acts as an adaptor protein. PEA-15 contains an N-terminal DED domain and a C-terminal disordered region. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can
Probab=21.26 E-value=70 Score=17.09 Aligned_cols=17 Identities=6% Similarity=0.106 Sum_probs=6.9
Q ss_pred HHHhhcCCcCCHHHHHH
Q psy15709 91 VCHFLRDDDVQEKELKE 107 (121)
Q Consensus 91 ~~l~~~~~~~~~~e~~~ 107 (121)
.+|.+++..++.+++..
T Consensus 5 ~lL~~Ise~L~~~dl~~ 21 (84)
T cd08338 5 SLLNDLTENITSEDLEQ 21 (84)
T ss_pred HHHHHHHHhcCHHHHHH
Confidence 33333444444444433
No 454
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=21.24 E-value=3.3e+02 Score=19.97 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcc--CCCCceeHHHHHHHHHhh
Q psy15709 13 EKVRTILNTLGHFIDDVELETVIDEINV--ESGDKISFEEFLQVACHF 58 (121)
Q Consensus 13 ~el~~~l~~~~~~~~~~~~~~~~~~~d~--~~~g~i~~~ef~~~~~~~ 58 (121)
.-+...|+.+|+.++.+++..++..+.. +..+.++-+++..++...
T Consensus 332 ~~i~~~l~~~g~~l~~~~~~~~~~~vk~~~~~~~~~~~~~l~~l~~~~ 379 (494)
T TIGR00973 332 HAFKDRLEELGFKLDDEELDKLFEKFKELADKKKEVTDEDLEALVFEE 379 (494)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 4456677888998888888877776632 223468888888877543
No 455
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=21.18 E-value=3e+02 Score=19.26 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcc---CCCCceeHHHHHHHHHhh
Q psy15709 15 VRTILNTLGHFIDDVELETVIDEINV---ESGDKISFEEFLQVACHF 58 (121)
Q Consensus 15 l~~~l~~~~~~~~~~~~~~~~~~~d~---~~~g~i~~~ef~~~~~~~ 58 (121)
+...++.+|+.++.+++..++..+-. .....++-+++..++...
T Consensus 325 v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~~~~~ 371 (378)
T PRK11858 325 LKNKLKEYGIELSREELCELLEKVKELSERKKRSLTDEELKELVEDV 371 (378)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34455566666666666555554421 112356666666655443
No 456
>cd08336 DED_FADD Death Effector Domain found in Fas-Associated via Death Domain. Death Effector Domain (DED) found in Fas-Associated via Death Domain (FADD). DEDs comprise a subfamily of the Death Domain (DD) superfamily. FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor and its DED recruits the initiator caspases 8 and 10 to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily incl
Probab=21.10 E-value=55 Score=17.30 Aligned_cols=9 Identities=11% Similarity=-0.116 Sum_probs=4.2
Q ss_pred cCHHHHHHH
Q psy15709 84 SSRDVIVVC 92 (121)
Q Consensus 84 i~~~el~~~ 92 (121)
++.+++..+
T Consensus 14 L~~~dl~~l 22 (82)
T cd08336 14 LSDSELESL 22 (82)
T ss_pred cCHHHHHHH
Confidence 455554443
No 457
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=20.86 E-value=1.8e+02 Score=16.51 Aligned_cols=17 Identities=6% Similarity=0.299 Sum_probs=12.0
Q ss_pred CceeHHHHHHHHHhhcc
Q psy15709 44 DKISFEEFLQVACHFLR 60 (121)
Q Consensus 44 g~i~~~ef~~~~~~~~~ 60 (121)
+.+++.+|+.++.....
T Consensus 49 ~~~tv~~f~~~irk~l~ 65 (112)
T cd01611 49 SDLTVGQFVYIIRKRIQ 65 (112)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 55788888888766543
No 458
>KOG3040|consensus
Probab=20.83 E-value=1.3e+02 Score=19.62 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=17.8
Q ss_pred cCHHHHHHHHHhcCCCCCHHHH
Q psy15709 10 IEKEKVRTILNTLGHFIDDVEL 31 (121)
Q Consensus 10 i~~~el~~~l~~~~~~~~~~~~ 31 (121)
=+...+...|+.+|++++++++
T Consensus 51 ~Sk~~l~~rL~rlgf~v~eeei 72 (262)
T KOG3040|consen 51 ESKRNLHERLQRLGFDVSEEEI 72 (262)
T ss_pred hhHHHHHHHHHHhCCCccHHHh
Confidence 3567788888999999888776
No 459
>PF08681 DUF1778: Protein of unknown function (DUF1778); InterPro: IPR014795 This entry is represented by Vibrio phage ICP1, Orf50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA. ; PDB: 1Y9B_A.
Probab=20.73 E-value=1.5e+02 Score=15.51 Aligned_cols=14 Identities=43% Similarity=0.551 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHhh
Q psy15709 63 DVLEKELKEAFRLY 76 (121)
Q Consensus 63 ~~~~~~~~~~f~~~ 76 (121)
..+...++.+++.|
T Consensus 65 ~~p~~~L~~a~~~~ 78 (80)
T PF08681_consen 65 PQPNERLKEAMRRY 78 (80)
T ss_dssp HHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHhc
Confidence 45567777777665
No 460
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=20.71 E-value=1.4e+02 Score=15.95 Aligned_cols=21 Identities=5% Similarity=-0.059 Sum_probs=16.4
Q ss_pred CCcCHHHHHHHHhhc-CCcCCH
Q psy15709 82 HVSSRDVIVVCHFLR-DDDVQE 102 (121)
Q Consensus 82 g~i~~~el~~~l~~~-~~~~~~ 102 (121)
|.||..++...|.+. |..+..
T Consensus 30 GSVt~~dIa~~l~~~~g~~Idk 51 (87)
T PF03948_consen 30 GSVTSKDIAKALKEQTGIEIDK 51 (87)
T ss_dssp SEBSHHHHHHHHHHCCSSSSSS
T ss_pred cCcCHHHHHHHHHHhhCCeEec
Confidence 679999999999876 765543
No 461
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=20.61 E-value=2.2e+02 Score=17.58 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=29.0
Q ss_pred ccCCCCCcCHHHHHHHHhhc--CCcCCHHHHHHHHHhhc
Q psy15709 77 DKEETHVSSRDVIVVCHFLR--DDDVQEKELKEAFRLYD 113 (121)
Q Consensus 77 D~~~~g~i~~~el~~~l~~~--~~~~~~~e~~~~~~~~d 113 (121)
.++-...+|.++|.+.++.. +..++++.+..+....-
T Consensus 145 n~~~k~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 183 (187)
T smart00222 145 NPNVKKKMTLEDFIKNVRGSNDGEDLPREFLEELYDSIK 183 (187)
T ss_pred CCccCCCCCHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 44445689999999999876 46789999998887654
No 462
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=20.61 E-value=2e+02 Score=16.96 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=25.8
Q ss_pred HHHHHHhhccCCCCCcCHHHHHHHHhhcCCcCCHHHHHHHHHhh
Q psy15709 69 LKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112 (121)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~~~~~~ 112 (121)
+-.+++.... .-|+|+.+.++.+-..++ ++..++..++..+
T Consensus 15 ll~~L~~~Q~-~~g~i~~~~~~~iA~~l~--i~~~~v~~v~tFY 55 (145)
T PF01257_consen 15 LLPILHEVQE-EYGYIPEEALEEIAEALG--IPPAEVYGVATFY 55 (145)
T ss_dssp HHHHHHHHHH-HHSS--HHHHHHHHHHHT--S-HHHHHHHHHHS
T ss_pred HHHHHHHHHH-HcCCCCHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 3444444422 268999999998888888 7777777776654
No 463
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=20.58 E-value=1.9e+02 Score=18.03 Aligned_cols=28 Identities=11% Similarity=0.426 Sum_probs=15.5
Q ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhh
Q psy15709 29 VELETVIDEINVESGDKISFEEFLQVACHF 58 (121)
Q Consensus 29 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 58 (121)
+++..+...+-.. ..++|++|..++...
T Consensus 4 ~D~~~Ll~~F~~~--~~~~F~~F~~~W~~~ 31 (194)
T PF09808_consen 4 EDIDELLQRFQQA--ESVRFEDFKRLWREM 31 (194)
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHC
Confidence 3455555555332 456666666666544
No 464
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.58 E-value=92 Score=13.11 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=4.6
Q ss_pred CCHHHHHHHHH
Q psy15709 100 VQEKELKEAFR 110 (121)
Q Consensus 100 ~~~~e~~~~~~ 110 (121)
+|.++++..++
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55555555443
No 465
>KOG0148|consensus
Probab=20.57 E-value=41 Score=22.48 Aligned_cols=70 Identities=9% Similarity=0.084 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHhccCCCCceeHHHHHHHHHhhccCchhhHHHHHHHHHhhccCCCCCcCHHHHHHHHhhcC
Q psy15709 26 IDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRD 97 (121)
Q Consensus 26 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 97 (121)
.+++-+..+|..+..=.+.+|-|+|..-....... ..+...+...|+.+--+=+--|+.+.|+.++..+|
T Consensus 18 vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~--nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFG 87 (321)
T KOG0148|consen 18 VTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPG--NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFG 87 (321)
T ss_pred hHHHHHHHHHHhccccccceeehhhhccccccCcc--cCCCCccccceeEEehhcchhcchHHHHHHhcccc
Confidence 44455556666655434455666655444332221 11222333455555444444455555555555544
No 466
>PF15244 HSD3: Hydroxy-steroid dehydrogenase
Probab=20.55 E-value=1.8e+02 Score=20.81 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhhccCCCCCcCHHHHHHHHhhc
Q psy15709 65 LEKELKEAFRLYDKEETHVSSRDVIVVCHFLR 96 (121)
Q Consensus 65 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 96 (121)
....++.+|+.+=..+.|.++..-+++.|..+
T Consensus 380 Snr~Lervfe~HI~~Nk~~Lde~kMr~ll~~L 411 (419)
T PF15244_consen 380 SNRVLERVFERHIDQNKHRLDEEKMRHLLEQL 411 (419)
T ss_pred cHHHHHHHHHHHHHhhhcccCHHHHHHHHHHH
Confidence 44567888888877778888888888888764
No 467
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=20.48 E-value=91 Score=12.98 Aligned_cols=14 Identities=7% Similarity=-0.239 Sum_probs=8.7
Q ss_pred CCCcCHHHHHHHHh
Q psy15709 81 THVSSRDVIVVCHF 94 (121)
Q Consensus 81 ~g~i~~~el~~~l~ 94 (121)
.|.||.+|+.+.-.
T Consensus 14 ~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 14 KGEISEEEYEQKKA 27 (31)
T ss_pred cCCCCHHHHHHHHH
Confidence 56777777665443
No 468
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=20.44 E-value=93 Score=17.24 Aligned_cols=17 Identities=0% Similarity=-0.306 Sum_probs=10.5
Q ss_pred CCCcCHHHHHHHHhhcC
Q psy15709 81 THVSSRDVIVVCHFLRD 97 (121)
Q Consensus 81 ~g~i~~~el~~~l~~~~ 97 (121)
+|.+++++|.+.+..+.
T Consensus 4 d~~~~~~~F~~~W~sl~ 20 (114)
T PF09066_consen 4 DGSMDPEEFQEMWKSLP 20 (114)
T ss_dssp T----HHHHHHHHHHS-
T ss_pred CCccCHHHHHHHHHhCC
Confidence 58899999999998764
No 469
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=20.34 E-value=2.2e+02 Score=17.31 Aligned_cols=34 Identities=6% Similarity=0.008 Sum_probs=19.6
Q ss_pred ccCCCCCcCHHHHHHHHhh-cC-----------CcCCHHHHHHHHH
Q psy15709 77 DKEETHVSSRDVIVVCHFL-RD-----------DDVQEKELKEAFR 110 (121)
Q Consensus 77 D~~~~g~i~~~el~~~l~~-~~-----------~~~~~~e~~~~~~ 110 (121)
|.+.+|.|+...|..+|+. +| .+++.+++..++.
T Consensus 93 ~~~~n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~ 138 (175)
T PF04876_consen 93 DDSTNGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCE 138 (175)
T ss_pred cCCcccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHH
Confidence 3344666777777666653 33 2466666665544
Done!