RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15709
(121 letters)
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 47.4 bits (113), Expect = 8e-08
Identities = 26/79 (32%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD GTI +++ T++ +LG + EL+ +I+E++ + I F EFL + ++
Sbjct: 19 LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMK 78
Query: 61 DDDVLEKELKEAFRLYDKE 79
D D E+E+KEAF+++D++
Sbjct: 79 DTD-SEEEIKEAFKVFDRD 96
Score = 30.1 bits (68), Expect = 0.15
Identities = 16/56 (28%), Positives = 33/56 (58%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVAC 56
+FD G I ++R ++ LG + D E++ +I E +V+ +I++EEF+++
Sbjct: 92 VFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 46.5 bits (111), Expect = 2e-07
Identities = 33/115 (28%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD G I++ ++ IL +LG + E+ + +EI+ + + F EFL V L+
Sbjct: 28 LFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNET-VDFPEFLTVMSVKLK 86
Query: 61 DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
D E+EL+EAF+L+DK+ ++S ++ V L + + ++E+++ + YD+
Sbjct: 87 RGD-KEEELREAFKLFDKDHDGYISIGELRRVLKSL-GERLSDEEVEKLLKEYDE 139
Score = 29.6 bits (67), Expect = 0.24
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEF 51
FD G I ++R +L +LG + D E+E ++ E + + +I +EEF
Sbjct: 101 FDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEF 150
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 36.6 bits (85), Expect = 7e-04
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD+ GTI+ ++++ + +LG E++ +I +++ + KI FEEFL + L
Sbjct: 25 LFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLG 84
Query: 61 DDDVLEKELKEAFRLYDKEET 81
+ D E E+ +AFRL+D ++T
Sbjct: 85 ERDPRE-EILKAFRLFDDDKT 104
Score = 31.6 bits (72), Expect = 0.051
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+FD K G I + ++ + LG I D EL+ +IDE + +IS EEF ++
Sbjct: 98 LFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRI 151
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse
superfamily of calcium sensors and calcium signal
modulators; most examples in this alignment model have
2 active canonical EF hands. Ca2+ binding induces a
conformational change in the EF-hand motif, leading to
the activation or inactivation of target proteins.
EF-hands tend to occur in pairs or higher copy numbers.
Length = 63
Score = 31.0 bits (71), Expect = 0.026
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53
+FD GTI ++++ L +LG + + E++ +I E++ + KI FEEFL+
Sbjct: 8 LFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Score = 24.0 bits (53), Expect = 9.1
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 68 ELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
EL+EAFRL+DK+ +S+ ++ L + E+E+ E R DK
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLS-EEEIDEMIREVDK 47
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 30.8 bits (70), Expect = 0.035
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVE---SGD-KISFEEFLQ 53
+ D G I+ E++R +L LG + D E+E +I+ E GD +ISFEEFL+
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLE 58
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 31.9 bits (73), Expect = 0.067
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 12/52 (23%)
Query: 60 RDDDVLEKELKEAFRLYDK--------EETHVSSRDVIVVCHFLRDDDVQEK 103
+ D LE EAF Y EE H+ SR V+VVC RD+ V +
Sbjct: 498 KLDGYLEHPA-EAFAYYRARGVEEVVCEEKHMGSRAVVVVC---RDEAVARR 545
>gnl|CDD|205936 pfam13763, DUF4167, Domain of unknown function (DUF4167).
Length = 80
Score = 28.8 bits (65), Expect = 0.25
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 42 SGDKISFEEFLQVACHFLR 60
SGD++ E +LQ A H+ R
Sbjct: 52 SGDRVLAENYLQHAEHYFR 70
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100
hierarchy contains only S-100 EF-hand domains, other
EF-hands have been modeled separately. S100 proteins
are expressed exclusively in vertebrates, and are
implicated in intracellular and extracellular
regulatory activities. Intracellularly, S100 proteins
act as Ca-signaling or Ca-buffering proteins. The most
unusual characteristic of certain S100 proteins is
their occurrence in extracellular space, where they act
in a cytokine-like manner through RAGE, the receptor
for advanced glycation products. Structural data
suggest that many S100 members exist within cells as
homo- or heterodimers and even oligomers;
oligomerization contributes to their functional
diversification. Upon binding calcium, most S100
proteins change conformation to a more open structure
exposing a hydrophobic cleft. This hydrophobic surface
represents the interaction site of S100 proteins with
their target proteins. There is experimental evidence
showing that many S100 proteins have multiple binding
partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such
as S100A1,-3,-4,-6,-7,-10,-11,and -13), this group
includes the ''fused'' gene family, a group of calcium
binding S100-related proteins. The ''fused'' gene
family includes multifunctional epidermal
differentiation proteins - profilaggrin, trichohyalin,
repetin, hornerin, and cornulin; functionally these
proteins are associated with keratin intermediate
filaments and partially crosslinked to the cell
envelope. These ''fused'' gene proteins contain
N-terminal sequence with two Ca-binding EF-hands motif,
which may be associated with calcium signaling in
epidermal cells and autoprocessing in a
calcium-dependent manner. In contrast to S100 proteins,
"fused" gene family proteins contain an extraordinary
high number of almost perfect peptide repeats with
regular array of polar and charged residues similar to
many known cell envelope proteins.
Length = 88
Score = 27.5 bits (62), Expect = 0.88
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 5 GKRGTIEKEKVRTILNT-LGHFIDDVELETVIDEI----NVESGDKISFEEFLQ------ 53
G + T+ K++++ +L T L +F+ + + +D+I +V K+ F+EFL
Sbjct: 22 GDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81
Query: 54 VACH 57
VACH
Sbjct: 82 VACH 85
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 26.3 bits (59), Expect = 1.1
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 6 KRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
++G I +E+++ L LG + + E++ + E + + KISFEEF +
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFCVL 49
>gnl|CDD|237616 PRK14127, PRK14127, cell division protein GpsB; Provisional.
Length = 109
Score = 27.3 bits (61), Expect = 1.2
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 63 DVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKE 107
D+LEKE K + R YD++E DVI +D + +KE++E
Sbjct: 10 DILEKEFKTSMRGYDQDEVDKFLDDVI------KDYEAFQKEIEE 48
>gnl|CDD|176556 cd08619, PI-PLCXDc_plant, Catalytic domain of
phosphatidylinositol-specific phospholipase C, X domain
containing proteins found in plants. The CD corresponds
to the catalytic domain present in uncharacterized plant
phosphatidylinositol-specific phospholipase C, X domain
containing proteins (PI-PLCXD). The typical eukaryotic
phosphoinositide-specific phospholipase C (PI-PLC, EC
3.1.4.11) has a multidomain organization that consists
of a PLC catalytic core domain, and various regulatory
domains. The catalytic core domain is assembled from two
highly conserved X- and Y-regions split by a divergent
linker sequence. In contrast, plant PI-PLCXDs contain a
single TIM-barrel type catalytic domain, X domain, and
are more closely related to bacterial PI-PLCs, which
participate in Ca2+-independent PI metabolism,
hydrolyzing the membrane lipid phosphatidylinositol (PI)
to produce phosphorylated myo-inositol and
diacylglycerol (DAG). Although the biological function
of plant PI-PLCXDs still remains unclear, it may
distinct from that of typical eukaryotic PI-PLCs.
Length = 285
Score = 27.9 bits (62), Expect = 1.3
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 8 GTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKIS--FEEFL--QVACHFL-RDD 62
G ++ V +LN + F+ + + E VI EI E G + F+ +L Q+ H + +DD
Sbjct: 86 GCLKTYPVDVVLNDIKRFLSETKSEFVILEIRTEYGHEDPPQFDLWLVEQLGDHLIHQDD 145
Query: 63 DVLEKELKE 71
V K L E
Sbjct: 146 SVFSKTLAE 154
>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in MgcRacGAP proteins. MgcRacGAP
plays an important dual role in cytokinesis: i) it is
part of centralspindlin-complex, together with the
mitotic kinesin MKLP1, which is critical for the
structure of the central spindle by promoting microtuble
bundling. ii) after phosphorylation by aurora B
MgcRacGAP becomes an effective regulator of RhoA and
plays an important role in the assembly of the
contractile ring and the initiation of cytokinesis.
MgcRacGAP-like proteins contain a N-terminal C1-like
domain, and a C-terminal RhoGAP domain. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 193
Score = 26.9 bits (60), Expect = 2.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 67 KELKEAFRLYDKEETHVSSRDVIVVC----HFLRD------DDVQEKELKEAFRLYDKE 115
K LKE F L K ++S D+ V+C FLR KE EA + D++
Sbjct: 49 KALKEKF-LRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALWKEFMEAAEILDED 106
>gnl|CDD|200550 cd10924, CE4_COG4878, Putative NodB-like catalytic domain of
uncharacterized proteins found in bacteria. The family
corresponds to a group of uncharacterized bacterial
proteins with high sequence similarity to the catalytic
domain of the six-stranded barrel rhizobial NodB-like
proteins, which remove N-linked or O-linked acetyl
groups from cell wall polysaccharides and belong to the
larger carbohydrate esterase 4 (CE4) superfamily.
Length = 273
Score = 26.9 bits (60), Expect = 2.7
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 20/65 (30%)
Query: 21 TLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEK---------ELKE 71
T G++ DD L T + +N L V HF+ DDVL+ EL +
Sbjct: 205 TSGYYPDDDLLLTAVSALN-----------NLGVVSHFVHPDDVLDAERSANKGWEELFK 253
Query: 72 AFRLY 76
+ +
Sbjct: 254 SLEKF 258
>gnl|CDD|240149 cd05022, S-100A13, S-100A13: S-100A13 domain found in proteins
similar to S100A13. S100A13 is a calcium-binding
protein belonging to a large S100 vertebrate-specific
protein family within the EF-hand superfamily of
calcium-binding proteins. Note that the S-100
hierarchy, to which this S-100A13 group belongs,
contains only S-100 EF-hand domains, other EF-hands
have been modeled separately. S100A13 is involved in
the cellular export of interleukin-1 (IL-1) and of
fibroblast growth factor-1 (FGF-1), which plays an
important role in angiogenesis and tissue regeneration.
Export is based on the CuII-dependent formation of
multiprotein complexes containing the S100A13 protein.
Assembly of these complexes occurs near the inner
surface of the plasma membrane. Binding of two Ca(II)
ions per monomer triggers key conformational changes
leading to the creation of two identical and
symmetrical Cu(II)-binding sites on the surface of the
protein, close to the interface between the two
monomers. These Cu(II)-binding sites are unique among
the S100 proteins, which are reported to bind Cu(II) or
Zn(II) ions in addition to Ca(II) ions. In addition,
the three-dimensional structure of S100A13 differs
significantly from those of other S100 proteins; the
hydrophobic pocket that largely contributes to
protein-protein interactions in other S100 proteins is
absent in S100A13. The structure of S100A13 contains a
large patch of negatively charged residues flanked by
dense cationic clusters, formed mostly from positively
charged residues from the C-terminal end, which plays
major role in binding FGF-1.
Length = 89
Score = 25.8 bits (57), Expect = 3.4
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 5 GKRGTIEKEKVRTILNT-LGHFIDDVE-LETVIDEINVESGDKISFEEF 51
G + ++ + + +L L H + DVE LE + ++V K+SFEEF
Sbjct: 21 GGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEF 69
>gnl|CDD|235512 PRK05576, PRK05576, cobalt-precorrin-2 C(20)-methyltransferase;
Validated.
Length = 229
Score = 26.4 bits (59), Expect = 3.7
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 82 HVSSRDVIVVCHF--LRDDDVQEKELKEAFR 110
++ IV HF +D++ +E KE
Sbjct: 51 YLKEETEIVELHFPMSKDEEEKEAVWKENAE 81
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 26.0 bits (58), Expect = 5.1
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 61 DDDVLEKELKEAFRLYDKEETHVSSR 86
D+ EL+ AF T V R
Sbjct: 237 SDEEFLAELQRAFGSRLGAITLVGER 262
>gnl|CDD|198299 cd03190, GST_C_Omega_like, C-terminal, alpha helical domain of
Class Omega-like Glutathione S-transferases.
Glutathione S-transferase (GST) C-terminal domain
family, Saccharomyces cerevisiae Omega-like subfamily;
composed of three Saccharomyces cerevisiae GST
omega-like (Gto) proteins, Gto1p, Gto2p (also known as
Extracellular mutant protein 4 or ECM4p), and Gto3p, as
well as similar uncharacterized proteins from fungi and
bacteria. The three Saccharomyces cerevisiae Gto
proteins are omega-class GSTs with low or no GST
activity against standard substrates, but have
glutaredoxin/thiol oxidoreductase and dehydroascorbate
reductase activity through a single cysteine residue in
the active site. Gto1p is located in the peroxisomes
while Gto2p and Gto3p are cytosolic. The gene encoding
Gto2p, called ECM4, is involved in cell surface
biosynthesis and architecture. S. cerevisiae ECM4
mutants show increased amounts of the cell wall hexose,
N-acetylglucosamine. More recently, global gene
expression analysis shows that ECM4 is upregulated
during genotoxic conditions and together with the
expression profiles of 18 other genes could potentially
differentiate between genotoxic and cytotoxic insults
in yeast.
Length = 142
Score = 25.6 bits (57), Expect = 5.4
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 17/68 (25%)
Query: 30 ELETVIDEINVESGDKISFEEFLQVA-------CHFLRDDDVLEKELKEAFRLYDKEETH 82
EL IDE+N E++ F + +K +KE F DK E
Sbjct: 3 ELRKEIDELN----------EWIYDNINNGVYKAGFATTQEAYDKAVKELFEALDKLEKR 52
Query: 83 VSSRDVIV 90
+S + ++
Sbjct: 53 LSKQPYLL 60
>gnl|CDD|218689 pfam05681, Fumerase, Fumarate hydratase (Fumerase). This family
consists of several bacterial fumarate hydratase
proteins FumA and FumB. Fumarase, or fumarate hydratase
(EC 4.2.1.2), is a component of the citric acid cycle.
In facultative anaerobes such as Escherichia coli,
fumarase also engages in the reductive pathway from
oxaloacetate to succinate during anaerobic growth.
Three fumarases, FumA, FumB, and FumC, have been
reported in E. coli. fumA and fumB genes are homologous
and encode products of identical sizes which form
thermolabile dimers of Mr 120,000. FumA and FumB are
class I enzymes and are members of the iron-dependent
hydrolases, which include aconitase and malate
hydratase. The active FumA contains a 4Fe-4S centre,
and it can be inactivated upon oxidation to give a
3Fe-4S centre.
Length = 271
Score = 25.9 bits (58), Expect = 6.1
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 49 EEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVI 89
E + A +L DVL LK A + EE ++ V+
Sbjct: 6 AEAIIEASTYLP-PDVLAA-LKRA---LEDEE-SPLAKFVL 40
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 25.9 bits (57), Expect = 6.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 9 TIEKEKVRTILNTLGHFIDDVELETVIDEI 38
TIEKE + L+ L I+DVE V DE+
Sbjct: 407 TIEKEVLDEGLDILEEAIEDVEEGKVPDEV 436
>gnl|CDD|218707 pfam05704, Caps_synth, Capsular polysaccharide synthesis protein.
This family consists of several capsular
polysaccharide proteins. Capsular polysaccharide (CPS)
is a major virulence factor in Streptococcus
pneumoniae.
Length = 279
Score = 25.7 bits (57), Expect = 7.7
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 45 KISFEEFLQVACHFLRDDDV---LEKELKEAFRLYDKEETHVSSRDVIV 90
+ LQ +FLR + L+K+ K+ YD +E + I+
Sbjct: 2 NYLLFKNLQRKIYFLRHKVILNYLKKKFKKKLLTYDYKEKLSEQNNKII 50
>gnl|CDD|223621 COG0547, TrpD, Anthranilate phosphoribosyltransferase [Amino acid
transport and metabolism].
Length = 338
Score = 25.6 bits (57), Expect = 8.5
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 14 KVRTILNTLGHFI 26
VRTI N LG +
Sbjct: 172 GVRTIFNLLGPLL 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.385
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,501,709
Number of extensions: 612971
Number of successful extensions: 906
Number of sequences better than 10.0: 1
Number of HSP's gapped: 894
Number of HSP's successfully gapped: 104
Length of query: 121
Length of database: 10,937,602
Length adjustment: 84
Effective length of query: 37
Effective length of database: 7,211,866
Effective search space: 266839042
Effective search space used: 266839042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (23.9 bits)