RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15709
(121 letters)
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 68.0 bits (167), Expect = 9e-16
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD G ++ +++ + LG + E+ +IDE + E + +++F V +
Sbjct: 31 LFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKIL 90
Query: 61 DDDVLEKELKEAFRLYDKEET 81
D E+K AF+L+D + T
Sbjct: 91 KRDP-LDEIKRAFQLFDDDHT 110
Score = 37.1 bits (87), Expect = 3e-04
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+FD G I + +R + LG + D EL +I+E +++ +I+ EF+ +
Sbjct: 104 LFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAI 157
Score = 24.8 bits (55), Expect = 7.8
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 39/87 (44%)
Query: 67 KELKEAFRLYDKEET-HVSSRD-------------------------------------V 88
+E+ EAF L+D + +
Sbjct: 23 QEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFY 82
Query: 89 IVVCHFLRDDDVQEKELKEAFRLYDKE 115
IV+ + D E+K AF+L+D +
Sbjct: 83 IVMGEKILKRD-PLDEIKRAFQLFDDD 108
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 67.1 bits (165), Expect = 1e-15
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FDS + G I KE ++T+L G ++ + +E + KI F EFL + ++
Sbjct: 14 LFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRRMK 73
Query: 61 DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYD 113
E L++AFR +D E T ++ + L D ++ E E + +
Sbjct: 74 QTTS-EDILRQAFRTFDPEGTGYIPKAALQDALLNL-GDRLKPHEFAEFLGITE 125
Score = 39.0 bits (92), Expect = 5e-05
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
FD G I K ++ L LG + E + E G +I ++ F+
Sbjct: 87 TFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITETEKG-QIRYDNFINT 139
Score = 25.1 bits (56), Expect = 4.8
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 39/87 (44%)
Query: 67 KELKEAFRLYDKEET-HVSSRDVIVV---------------------------------- 91
E KEAF L+D E T ++ + V
Sbjct: 6 SEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFL 65
Query: 92 ---CHFLRDDDVQEKELKEAFRLYDKE 115
++ E L++AFR +D E
Sbjct: 66 SMMGRRMKQTT-SEDILRQAFRTFDPE 91
Score = 24.4 bits (54), Expect = 9.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 101 QEKELKEAFRLYDKE 115
Q E KEAF L+D E
Sbjct: 4 QVSEFKEAFELFDSE 18
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 67.2 bits (165), Expect = 1e-15
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
FD K G I + + T+G+ ++EL + +IN+ G + F++F+++ L
Sbjct: 19 EFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLL 78
Query: 61 DDD---VLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
+ + KEL++AFR +D +S+ ++ L V ++++E R D
Sbjct: 79 AETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDL 136
Score = 32.5 bits (75), Expect = 0.012
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 MFDSGKRGTIEKEKVRTIL-NTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
FD+ G I ++R + LGH + ++E +I ++++ ++ FEEF+++
Sbjct: 96 EFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRM 150
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 67.6 bits (166), Expect = 2e-15
Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 41/155 (26%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD GTI +++ T++ +LG + EL+ +I+E++ + I F EFL + ++
Sbjct: 19 LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK 78
Query: 61 DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFL------------------------ 95
D D E+E++EAFR++DK+ ++S+ ++ V L
Sbjct: 79 DTDS-EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV 137
Query: 96 ---------------RDDDVQEKELKEAFRLYDKE 115
+++ ++ R K
Sbjct: 138 NYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKM 172
Score = 56.4 bits (137), Expect = 3e-11
Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD G I ++R ++ LG + D E++ +I E +++ ++++EEF+Q+
Sbjct: 92 VFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKGG 151
Query: 61 DDD--VLEKELKEAFRLYDKEET 81
++ ++ R K
Sbjct: 152 GGGAAARKEVIRNKIRAIGKMAR 174
Score = 25.6 bits (57), Expect = 4.4
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 39/87 (44%)
Query: 67 KELKEAFRLYDKEET-HVSSRDVIVV---------------------------------- 91
E KEAF L+DK+ ++++++ V
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 70
Query: 92 ---CHFLRDDDVQEKELKEAFRLYDKE 115
++D D E+E++EAFR++DK+
Sbjct: 71 TMMARKMKDTD-SEEEIREAFRVFDKD 96
Score = 24.8 bits (55), Expect = 8.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 101 QEKELKEAFRLYDKE 115
Q E KEAF L+DK+
Sbjct: 9 QIAEFKEAFSLFDKD 23
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 66.8 bits (164), Expect = 3e-15
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
MFD+ G I +++ T++ LG EL+ +I+E++ + I FEEFL + ++
Sbjct: 28 MFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMK 87
Query: 61 DDDVL--EKELKEAFRLYDKEET 81
+D E+EL FR++DK
Sbjct: 88 EDAKGKSEEELANCFRIFDKNAD 110
Score = 36.8 bits (86), Expect = 4e-04
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+FD G I+ E++ IL G + + ++E ++ + + + +I F+EFL++
Sbjct: 104 IFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKM 157
Score = 24.8 bits (55), Expect = 6.3
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 40/89 (44%)
Query: 67 KELKEAFRLYDKEET-HVSSRDVIVV---------------------------------- 91
E K AF ++D + +S++++ V
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFL 79
Query: 92 ---CHFLRDDDVQ--EKELKEAFRLYDKE 115
+++D E+EL FR++DK
Sbjct: 80 VMMVRQMKEDAKGKSEEELANCFRIFDKN 108
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 66.4 bits (163), Expect = 3e-15
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 1 MFDS-GKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFL 59
+F + G+I +++ ++ LG EL+ +IDE++ + + F+EFL + +
Sbjct: 26 IFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSM 85
Query: 60 RDDDVL--EKELKEAFRLYDKEET 81
+DD E+EL + FR++DK
Sbjct: 86 KDDSKGKSEEELSDLFRMFDKNAD 109
Score = 36.8 bits (86), Expect = 4e-04
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
MFD G I+ E+++ +L G I + ++E ++ + + + +I ++EFL+
Sbjct: 103 MFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 156
Score = 25.6 bits (57), Expect = 3.4
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 43/108 (39%)
Query: 49 EEFLQVACHFLRDDDVLEKELKEAFRLYDKEET--HVSSRD------------------- 87
++ + A L ++ E K AF ++ +S+++
Sbjct: 2 DDIYKAAVEQLTEEQK--NEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQE 59
Query: 88 ------------------VIVVCHFLRDDDVQ--EKELKEAFRLYDKE 115
++++ ++DD E+EL + FR++DK
Sbjct: 60 MIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKN 107
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 67.2 bits (164), Expect = 2e-14
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD GTI +++ T++ +LG + EL+ +I+E++ + I F EFL + ++
Sbjct: 320 LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK 379
Query: 61 DDDVLEKELKEAFRLYDKEET 81
D D E+E++EAFR++DK+
Sbjct: 380 DTDS-EEEIREAFRVFDKDGN 399
Score = 38.3 bits (89), Expect = 2e-04
Identities = 15/54 (27%), Positives = 33/54 (61%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+FD G I ++R ++ LG + D E++ +I E +++ ++++EEF+Q+
Sbjct: 393 VFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 446
Score = 30.6 bits (69), Expect = 0.088
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 31/106 (29%)
Query: 12 KEKVRTILNTLGHFIDDVELETVI-DEINVESGDKISFEEFLQVACHFLRDDDVLEKELK 70
++ G++ E++ +N I F+E + H L +
Sbjct: 250 IQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNT------- 302
Query: 71 EAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEE 116
L ++ Q E KEAF L+DK+
Sbjct: 303 ---------------------RDQLTEE--QIAEFKEAFSLFDKDG 325
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 64.5 bits (158), Expect = 2e-14
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD+ GTI+ ++++ + LG E++ +I EI+ + I FEEFL + +
Sbjct: 36 LFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMG 95
Query: 61 DDDVLEKELKEAFRLYDKEET 81
+ D +E+ +AFRL+D + +
Sbjct: 96 ERDS-REEILKAFRLFDDDNS 115
Score = 36.8 bits (86), Expect = 5e-04
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+FD GTI + +R + LG + + EL+ +I E + ++I +EF+++
Sbjct: 109 LFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRI 162
Score = 24.8 bits (55), Expect = 8.0
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 101 QEKELKEAFRLYDKE 115
Q++E++EAF L+D +
Sbjct: 26 QKQEIREAFDLFDTD 40
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 63.7 bits (156), Expect = 2e-14
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD G + E++ + L +LG + EL T+ ++N + F V ++
Sbjct: 13 IFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNA---KEFDLATFKTVYRKPIK 69
Query: 61 DDDVLEKELKEAFRLYDKEET 81
KE+ +AFR DKE
Sbjct: 70 TPTEQSKEMLDAFRALDKEGN 90
Score = 36.4 bits (85), Expect = 5e-04
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
D GTI++ ++R +L LG + E+E ++ E++V I++E F+ +
Sbjct: 84 ALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDM 137
Score = 31.0 bits (71), Expect = 0.053
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 35/85 (41%)
Query: 66 EKELKEAFRLYDKEET-HVSSRDVIVV--------------------------------- 91
+++E F+++DK+ VS ++
Sbjct: 4 ADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTV 63
Query: 92 -CHFLRDDDVQEKELKEAFRLYDKE 115
++ Q KE+ +AFR DKE
Sbjct: 64 YRKPIKTPTEQSKEMLDAFRALDKE 88
Score = 26.7 bits (60), Expect = 1.6
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 101 QEKELKEAFRLYDKEEPMSI 120
+++E F+++DK+ +
Sbjct: 3 SADQIQECFQIFDKDNDGKV 22
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 63.6 bits (156), Expect = 3e-14
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD+ GTI+ ++++ + LG E++ +I EI+ E K++F +FL V +
Sbjct: 14 LFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMS 73
Query: 61 DDDVLEKELKEAFRLYDKEET 81
+ D ++E+ +AF+L+D +ET
Sbjct: 74 EKDT-KEEILKAFKLFDDDET 93
Score = 37.4 bits (88), Expect = 2e-04
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+FD + G I + ++ + LG + D EL+ +IDE + + ++S +EFL++
Sbjct: 87 LFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRI 140
Score = 24.7 bits (55), Expect = 7.5
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 101 QEKELKEAFRLYDKE 115
Q++E++EAF L+D +
Sbjct: 4 QKQEIREAFDLFDAD 18
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A
2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B*
2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 63.7 bits (156), Expect = 3e-14
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD GTI +++ T++ +LG + EL+ +I+E++ + I F EFL + ++
Sbjct: 18 LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMK 77
Query: 61 DDDVLEKELKEAFRLYDKEET 81
+ D E+EL EAF+++D++
Sbjct: 78 EQDS-EEELIEAFKVFDRDGN 97
Score = 38.2 bits (90), Expect = 1e-04
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+FD G I ++R ++ LG + D E++ +I E +++ I++EEF+++
Sbjct: 91 VFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRM 144
Score = 25.5 bits (57), Expect = 4.0
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 39/87 (44%)
Query: 67 KELKEAFRLYDKEET-HVSSRDVIVV---------------------------------- 91
E KEAF L+DK+ ++++++ V
Sbjct: 10 AEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
Query: 92 ---CHFLRDDDVQEKELKEAFRLYDKE 115
+++ D E+EL EAF+++D++
Sbjct: 70 SLMARKMKEQD-SEEELIEAFKVFDRD 95
Score = 25.1 bits (56), Expect = 6.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 101 QEKELKEAFRLYDKE 115
Q E KEAF L+DK+
Sbjct: 8 QIAEFKEAFALFDKD 22
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 63.3 bits (155), Expect = 4e-14
Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD G+I ++ T++ +LG + E+ +++EI+V+ I F EFL + L+
Sbjct: 19 LFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLK 78
Query: 61 DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYD 113
+D E+EL EAF+++DK +S+ ++ V + + + + E+ E R
Sbjct: 79 CNDS-EQELLEAFKVFDKNGDGLISAAELKHVLTSI-GEKLTDAEVDEMLREVS 130
Score = 38.2 bits (90), Expect = 1e-04
Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+FD G I +++ +L ++G + D E++ ++ E++ SG +I+ ++F +
Sbjct: 92 VFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVSDGSG-EINIKQFAAL 144
Score = 24.7 bits (55), Expect = 6.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 101 QEKELKEAFRLYDKE 115
Q E KEAF L+DK+
Sbjct: 9 QIAEFKEAFALFDKD 23
Score = 24.3 bits (54), Expect = 9.7
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 39/87 (44%)
Query: 67 KELKEAFRLYDKEET-HVSSRDVIVV---------------------------------- 91
E KEAF L+DK+ + +S+ ++ V
Sbjct: 11 AEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFL 70
Query: 92 ---CHFLRDDDVQEKELKEAFRLYDKE 115
L+ +D E+EL EAF+++DK
Sbjct: 71 ALMSRQLKCND-SEQELLEAFKVFDKN 96
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 59.1 bits (144), Expect = 1e-12
Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D G + E+V+ ++ ++ L+ + I+ + +I EF +
Sbjct: 8 EIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQG 67
Query: 61 DDDVL-EKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQE 102
D + LK ++L D + ++ +V + V E
Sbjct: 68 QDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAE 111
Score = 29.4 bits (67), Expect = 0.15
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53
+ D G + KE+V + G ++ + + + I+ EEFL+
Sbjct: 83 LMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKADANGDGYITLEEFLE 131
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 59.5 bits (145), Expect = 1e-12
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 1 MFDSG-KRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFL 59
F++ G + +++ IL LG + +IDE + I F+ F + FL
Sbjct: 21 DFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFL 80
Query: 60 R---DDDVLEKELKEAFRLYDKEET 81
+ + +++EL+EAFRLYDKE
Sbjct: 81 GEEVNPEQMQQELREAFRLYDKEGN 105
Score = 36.8 bits (86), Expect = 5e-04
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
++D G I + +R IL L + +L+ +IDEI+ + + FEEF+ V
Sbjct: 99 LYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGV 152
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 60.3 bits (147), Expect = 1e-12
Identities = 23/114 (20%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
M D+ GTI ++++ L +G + + E++ ++D +++ I + EF+ H +
Sbjct: 18 MIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNK 77
Query: 61 DDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
+ E+ L AF +DK+ + + D I +D + + + + + D+
Sbjct: 78 LER--EENLVSAFSYFDKDGSGYITLDEI--QQACKDFGLDDIHIDDMIKEIDQ 127
Score = 40.3 bits (95), Expect = 2e-05
Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
FD G I ++++ G +DD+ ++ +I EI+ ++ +I + EF +
Sbjct: 90 YFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRKRKG 147
Query: 61 DDDVLEK------ELKEAFRLYDKEET 81
+ + + L++A L D
Sbjct: 148 NGGIGRRTMRKTLNLRDALGLVDNGSN 174
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 59.1 bits (144), Expect = 2e-12
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
M D + G + KE ++ I LG DD EL ++ E ++F FL + L
Sbjct: 26 MIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP----GPLNFTMFLSIFSDKLS 81
Query: 61 DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
D E+ ++ AF ++D++ET ++ + + + D+ + E++ F+
Sbjct: 82 GTDS-EETIRNAFAMFDEQETKKLNIEYIKDLLENM-GDNFNKDEMRMTFKEAPV 134
Score = 40.2 bits (95), Expect = 3e-05
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
MFD + + E ++ +L +G + E+ E VE G K + +F +
Sbjct: 95 MFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEGG-KFDYVKFTAMIKGSGE 153
Query: 61 DD 62
++
Sbjct: 154 EE 155
Score = 24.8 bits (55), Expect = 6.7
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 33/82 (40%)
Query: 67 KELKEAFRLYDKEET-HVSSRDVIVVC----HFLRDDDVQ-------------------- 101
+E+KEAF + D + VS D+ + D ++
Sbjct: 18 QEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFS 77
Query: 102 --------EKELKEAFRLYDKE 115
E+ ++ AF ++D++
Sbjct: 78 DKLSGTDSEETIRNAFAMFDEQ 99
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 58.4 bits (142), Expect = 3e-12
Identities = 15/86 (17%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVID-EINVESGDKISFEEFLQVACHFL 59
+FD +G I K+ + L +G+ + ++ +I+ + ++ ++ ++ +
Sbjct: 12 LFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNE 71
Query: 60 RDDD----VLEKELKEAFRLYDKEET 81
++ D ++ +AF+++DKE T
Sbjct: 72 KELDATTKAKTEDFVKAFQVFDKEST 97
Score = 37.2 bits (87), Expect = 2e-04
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+FD G + +R +L LG + D E++ ++ + V+S +I +++F++
Sbjct: 91 VFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIED 144
Score = 25.6 bits (57), Expect = 3.5
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 101 QEKELKEAFRLYDKE 115
+ K+ F L+DK+
Sbjct: 2 ATRANKDIFTLFDKK 16
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 58.9 bits (143), Expect = 4e-12
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 6/114 (5%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+ D K G I K +R ++LG + EL++++ E I+F FL + +
Sbjct: 65 LIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAP----GPINFTMFLTIFGDRIA 120
Query: 61 DDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
D E + AF L+D+ + + + + E+ +A
Sbjct: 121 GTDE-EDVIVNAFNLFDEGDGKCKEETLKRSLTTW-GEKFSQDEVDQALSEAPI 172
Score = 40.8 bits (96), Expect = 2e-05
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD G G ++E ++ L T G E++ + E ++ I ++F Q+ +
Sbjct: 134 LFDEGD-GKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQILTKGAK 192
Query: 61 DDD 63
++
Sbjct: 193 EEG 195
Score = 25.0 bits (55), Expect = 7.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 101 QEKELKEAFRLYDKE 115
Q +E KEAF+L D++
Sbjct: 55 QVQEFKEAFQLIDQD 69
Score = 24.6 bits (54), Expect = 9.4
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 16/44 (36%)
Query: 67 KELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFR 110
+E KEAF+L D++ +D + + +++ F
Sbjct: 57 QEFKEAFQLIDQD----------------KDGFISKNDIRATFD 84
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 58.3 bits (142), Expect = 4e-12
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
M D+ K G I E+++ L +G + + E+ ++ +V++ I ++EF+ H +
Sbjct: 35 MIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHLNK 94
Query: 61 DDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
+ E L AF +DK+ + + D + + V++ ++E R D+
Sbjct: 95 IER--EDHLFAAFTYFDKDGSGYITPDEL--QQACEEFGVEDVRIEELMRDVDQ 144
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGD-KISFEEFLQV 54
FD G I ++++ G ++DV +E ++ +++ + D +I + EF+ +
Sbjct: 107 YFDKDGSGYITPDELQQACEEFG--VEDVRIEELMRDVDQD-NDGRIDYNEFVAM 158
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 57.1 bits (139), Expect = 7e-12
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
M D + G I+KE + +L ++G D LE ++ E I+F FL + L
Sbjct: 15 MIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAP----GPINFTMFLTMFGEKLN 70
Query: 61 DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
D E ++ AF +D+E + + + + + D ++E+ E +R
Sbjct: 71 GTDP-EDVIRNAFACFDEEASGFIHEDHLRELLTTM-GDRFTDEEVDEMYREAPI 123
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
FD G I ++ +R +L T+G D E++ + E ++ ++ EF ++
Sbjct: 84 CFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRI 137
Score = 25.1 bits (56), Expect = 4.4
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 33/82 (40%)
Query: 67 KELKEAFRLYDKEET-HVSSRDVIVVC----HFLRDDDVQ-------------------- 101
+E KEAF + D+ + D+ + D+ ++
Sbjct: 7 QEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFG 66
Query: 102 --------EKELKEAFRLYDKE 115
E ++ AF +D+E
Sbjct: 67 EKLNGTDPEDVIRNAFACFDEE 88
Score = 24.8 bits (55), Expect = 6.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 101 QEKELKEAFRLYDKE 115
Q +E KEAF + D+
Sbjct: 5 QIQEFKEAFNMIDQN 19
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 57.2 bits (139), Expect = 2e-11
Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D GT+ +++ L +G+ ++ V+ +I+ + +I + +FL
Sbjct: 65 ALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQT 124
Query: 61 DDDVLEKELKEAFRLYDK 78
++ F+ +D
Sbjct: 125 YLK--KEVCLIPFKFFDI 140
Score = 34.5 bits (80), Expect = 0.004
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 1 MFDSGKRGTIEKEKVRTIL--NTLGHFIDDVELETVIDEINVESGD-KISFEEFLQ 53
FD G I E+++ I + + + + D +++++ E+++ GD +I F EF+
Sbjct: 137 FFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLN-GDGEIDFHEFML 191
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 56.4 bits (137), Expect = 2e-11
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVES--GDKISFEEFLQVACHF 58
+FD I +V I LG + E+ ++ + E I+FEEFL +
Sbjct: 16 LFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPMLQAA 75
Query: 59 LRDDDV-LEKELKEAFRLYDKEET 81
+ D ++ E R++DKE
Sbjct: 76 ANNKDQGTFEDFVEGLRVFDKEGN 99
Score = 34.4 bits (80), Expect = 0.002
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+FD GT+ ++R +L TLG + + E+E ++ +G I++E F++
Sbjct: 93 VFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQEDSNG-CINYEAFVKH 145
Score = 25.2 bits (56), Expect = 4.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 101 QEKELKEAFRLYDKEEPMSI 120
+ KEAF L+D+ I
Sbjct: 6 AADDFKEAFLLFDRTGDAKI 25
Score = 25.2 bits (56), Expect = 5.8
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 41/91 (45%)
Query: 67 KELKEAFRLYDKEET-HVSSRDVIVVC--------------------------------H 93
+ KEAF L+D+ +++ V +
Sbjct: 8 DDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEE 67
Query: 94 FLR--------DDDVQEKELKEAFRLYDKEE 116
FL D ++ E R++DKE
Sbjct: 68 FLPMLQAAANNKDQGTFEDFVEGLRVFDKEG 98
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 56.0 bits (136), Expect = 3e-11
Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
M D + G I E ++ + ++LG D EL ++ E +++F FL + +
Sbjct: 24 MIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP----GQLNFTAFLTLFGEKVS 79
Query: 61 DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
D E L+ AF ++D++ + + + + D+ ++E+K ++
Sbjct: 80 GTDP-EDALRNAFSMFDEDGQGFIPEDYLKDLLENM-GDNFSKEEIKNVWKDAPL 132
Score = 38.3 bits (90), Expect = 1e-04
Identities = 9/54 (16%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
MFD +G I ++ ++ +L +G E++ V + +++ + ++ + + +
Sbjct: 93 MFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLKNK-QFNYNKMVDI 145
Score = 24.8 bits (55), Expect = 7.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 101 QEKELKEAFRLYDKE 115
Q +ELKEAF + D++
Sbjct: 14 QMQELKEAFTMIDQD 28
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 55.6 bits (135), Expect = 4e-11
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 1 MFDSGKR--GTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHF 58
+FD G ++ K+ + LG + ++ + + + FEEFL
Sbjct: 17 LFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFA-VGGTHKMGEKSLPFEEFLPAYEGL 75
Query: 59 LRDDDVLEKELKEAFRLYDKEET 81
+ + + EAF+ +D+E
Sbjct: 76 MDCEQGTFADYMEAFKTFDREGQ 98
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVES-GD-KISFEEFLQV 54
FD +G I ++R +L LG + D +++ +I +++ + + +E+F++
Sbjct: 92 TFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKK 147
Score = 25.2 bits (56), Expect = 4.6
Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 39/89 (43%)
Query: 67 KELKEAFRLYDKEET---HVSSRDVIVV-------------------------------- 91
+LK+ F L+D + V + + V
Sbjct: 9 DDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEF 68
Query: 92 ----CHFLRDDDVQEKELKEAFRLYDKEE 116
+ + + EAF+ +D+E
Sbjct: 69 LPAYEGLMDCEQGTFADYMEAFKTFDREG 97
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 55.3 bits (134), Expect = 5e-11
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVES--GDKISFEEFLQVACHF 58
+FD G I + ++ LG + E+ V+ + ++ FE FL +
Sbjct: 18 LFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAV 77
Query: 59 LRDDDV-LEKELKEAFRLYDKEET 81
++ ++ E FR++DKE
Sbjct: 78 AKNRGQGTYEDYLEGFRVFDKEGN 101
Score = 34.9 bits (81), Expect = 0.002
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+FD G + ++R +L TLG + + E+ETV+ +G I++E FL+
Sbjct: 95 VFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNG-CINYEAFLKH 147
Score = 25.2 bits (56), Expect = 5.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 101 QEKELKEAFRLYDKEEPMSI 120
Q +E KEAF L+D+ I
Sbjct: 8 QLEEFKEAFELFDRVGDGKI 27
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 54.9 bits (133), Expect = 9e-11
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 6/115 (5%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+ D G I+K+ +R +G E +D + E+ I+F FL + L+
Sbjct: 33 VIDQNADGIIDKDDLRETFAAMGRLNVKNE---ELDAMIKEASGPINFTVFLTMFGEKLK 89
Query: 61 DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
D E + AF++ D + + + + +E+K + +
Sbjct: 90 GADP-EDVIMGAFKVLDPDGKGSIKKSFLEELLTTG-GGRFTPEEIKNMWAAFPP 142
Score = 38.7 bits (91), Expect = 8e-05
Identities = 10/63 (15%), Positives = 24/63 (38%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+ D +G+I+K + +L T G E++ + + + ++ V H
Sbjct: 103 VLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVITHGED 162
Query: 61 DDD 63
+
Sbjct: 163 AEG 165
Score = 24.9 bits (55), Expect = 7.6
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 101 QEKELKEAFRLYDKE 115
+ ++ KEAF + D+
Sbjct: 23 EIEDFKEAFTVIDQN 37
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 54.2 bits (131), Expect = 1e-10
Identities = 21/108 (19%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D G++ E+ ++ + ++ VID + + ++ F+EF++ F
Sbjct: 14 KLDLDNSGSLSVEEFMSLPELQQN----PLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSV 69
Query: 61 DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKE 107
D E++L+ AFR+YD ++ ++S+ ++ V + +++++ +L++
Sbjct: 70 KGD-KEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQ 116
Score = 34.1 bits (79), Expect = 0.004
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 1 MFDSGKRGTIEKEKVRTIL-NTLGHFIDDVELETVIDEINVES---GD-KISFEEFLQVA 55
++D K G I ++ +L +G+ + D +L+ ++D+ + + GD +ISFEEF
Sbjct: 83 IYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEF---- 138
Query: 56 CHFLRDDDVLEK 67
C + D+ +K
Sbjct: 139 CAVVGGLDIHKK 150
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 54.7 bits (132), Expect = 2e-10
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 3/108 (2%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D +++ ++ R L LG +D E E V + + + EEFL+ +
Sbjct: 45 QLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMS 104
Query: 61 DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKE 107
E + AF D+ V+ D+ V V+ E E
Sbjct: 105 QAR--EAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTE 150
Score = 35.0 bits (81), Expect = 0.002
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 1 MFDSGKRGTIEKEKVRTILNT-------LGHFIDDVELETVIDEINVESGD-KISFEEFL 52
D G + + +R + + G + +D L +D + D +++ EF
Sbjct: 117 KLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQ 176
Query: 53 QV---ACHFLRDDDVLEKELKEAFRL 75
+ D+ + A++L
Sbjct: 177 DYYSGVSASMNTDEEFVAMMTSAWQL 202
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin
regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 53.4 bits (129), Expect = 4e-10
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 1 MFDSGKR--GTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHF 58
+FD G ++ KV +L LG + ++ + EE L +
Sbjct: 17 LFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMGEK-AYKLEEILPIYEEM 75
Query: 59 LRDDDV-LEKELKEAFRLYDKEET 81
D E EAF+ +D+E
Sbjct: 76 SSKDTGTAADEFMEAFKTFDREGQ 99
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVES-GD-KISFEEFLQVACHF 58
FD +G I ++R +L LG I + + + ++ D I +E+ ++
Sbjct: 93 TFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAG 152
Query: 59 LRDDD 63
D
Sbjct: 153 PFPDK 157
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 53.4 bits (129), Expect = 4e-10
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+ D +G I KE+++ L G + + ++D+I+ + KI + EF+ A +
Sbjct: 60 VLDEDGKGYITKEQLKKGLEKDGLKLPY-NFDLLLDQIDSDGSGKIDYTEFIAAALDRKQ 118
Query: 61 DDDVLEKELKEAFRLYDK 78
+K + AFR++D
Sbjct: 119 LS---KKLIYCAFRVFDV 133
Score = 32.2 bits (74), Expect = 0.023
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGH-----FIDDVELETVIDEINVESGDKISFEEFLQ 53
+FD G I ++ IL D ++ +I +++ + KI F EF +
Sbjct: 130 VFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSE 187
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 53.5 bits (129), Expect = 5e-10
Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D+ G++ ++ T+L ++G I ++ ++ +++ I++ EF+ +
Sbjct: 47 KLDTNHNGSLSHREIYTVLASVG--IKKWDINRILQALDINDRGNITYTEFMAGCYRWKN 104
Query: 61 DDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
+ LK AF DK+E S+ I + D + ++ F
Sbjct: 105 IE---STFLKAAFNKIDKDEDGYISKSDI--VSLVHDKVLDNNDIDNFFLSVHS 153
Score = 32.3 bits (74), Expect = 0.017
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEI--------NVESGDKISFEEFL 52
D + G I K + ++++ +D+ +++ + +KISF+EF
Sbjct: 116 KIDKDEDGYISKSDIVSLVHDKV--LDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFK 173
Query: 53 Q 53
Sbjct: 174 D 174
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand;
NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 51.7 bits (125), Expect = 1e-09
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD G I K + +L G E I EI ++ E+FLQV
Sbjct: 13 LFDRHGTGRIPKTSIGDLLRACGQNPTLAE----ITEIESTLPAEVDMEQFLQVLNRPNG 68
Query: 61 DDDV-LEKELKEAFRLYDKEET 81
D +E + F+++DK+ T
Sbjct: 69 FDMPGDPEEFVKGFQVFDKDAT 90
Score = 36.3 bits (85), Expect = 5e-04
Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+FD G I ++R +L +LG + + E++ ++ + V+ G +++ +F+Q+
Sbjct: 84 VFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDG-MVNYHDFVQM 136
Score = 27.1 bits (61), Expect = 1.2
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 35/86 (40%)
Query: 66 EKELKEAFRLYDKEET-HVSSRDVIVVCH--------------------------FLR-- 96
+ K+AF L+D+ T + + + FL+
Sbjct: 4 DSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVL 63
Query: 97 ------DDDVQEKELKEAFRLYDKEE 116
D +E + F+++DK+
Sbjct: 64 NRPNGFDMPGDPEEFVKGFQVFDKDA 89
Score = 26.3 bits (59), Expect = 2.2
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 101 QEKELKEAFRLYDKE 115
+ K+AF L+D+
Sbjct: 3 DDSPYKQAFSLFDRH 17
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 51.1 bits (123), Expect = 2e-09
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+ G I + LG ++ + +I GD +++E++L+ +
Sbjct: 23 FNEKSSGGKISIDNASYNARKLGLAPSSIDEK----KIKELYGDNLTYEQYLEYLSICVH 78
Query: 61 DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKE 115
D D +EL + F +D T +++ + + D + ++E +A + E
Sbjct: 79 DKDN-VEELIKMFAHFDNNCTGYLTKSQMKNILTTW-GDALTDQEAIDALNAFSSE 132
Score = 35.7 bits (83), Expect = 0.001
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
FD+ G + K +++ IL T G + D E ++ + E I ++ F +
Sbjct: 92 HFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSSED--NIDYKLFCED 143
Score = 24.5 bits (54), Expect = 9.4
Identities = 2/15 (13%), Positives = 4/15 (26%)
Query: 101 QEKELKEAFRLYDKE 115
+ E +K
Sbjct: 13 KVDESDVRIYFNEKS 27
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 50.0 bits (120), Expect = 8e-09
Identities = 13/81 (16%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
DS G ++ +VR L + G+ + + + ++ + + + + F+++++++
Sbjct: 101 KRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELS----- 155
Query: 61 DDDVLEKELKEAFRLYDKEET 81
+ ++ F YD+E T
Sbjct: 156 ---IFVCRVRNVFAFYDRERT 173
Score = 48.8 bits (117), Expect = 2e-08
Identities = 21/145 (14%), Positives = 41/145 (28%), Gaps = 38/145 (26%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D+ G I ++ L++ G E ++ + +I+F+EF +
Sbjct: 35 AVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHF--- 91
Query: 61 DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFL-----------------RDDD--- 99
++E FR D + S +V R
Sbjct: 92 -----ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSL 146
Query: 100 ---------VQEKELKEAFRLYDKE 115
+ ++ F YD+E
Sbjct: 147 GFDDYVELSIFVCRVRNVFAFYDRE 171
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 47.3 bits (113), Expect = 4e-08
Identities = 12/88 (13%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 28 DVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEET-HVSSR 86
+ ++++ E + + +E+ L V + ++ EL + F L E +++
Sbjct: 2 EPTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEE-FVSELCKGFSLLADPERHLITAE 60
Query: 87 DVIVVCHFLRDDDVQEKELKEAFRLYDK 114
+ L + + +++ + R D
Sbjct: 61 SLRRNSGILGIEGMSKEDAQGMVREGDL 88
Score = 30.4 bits (69), Expect = 0.068
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGH-FIDDVELETVIDEINVESGDKISFEEFLQV 54
+ +R I E +R LG + + + ++ E +++ ++ EF +
Sbjct: 48 LLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVL 102
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 48.1 bits (115), Expect = 4e-08
Identities = 15/125 (12%), Positives = 45/125 (36%), Gaps = 15/125 (12%)
Query: 1 MFDSGKRGTIEKE-----------KVRTILNTLGHFIDDVELETVIDEINVESGDKISFE 49
D+ G ++++ ++ L + E++ ++ ++ + I +
Sbjct: 48 QLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYS 107
Query: 50 EFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAF 109
EF+ V + L AF+ +D + + + + + +V ++ +
Sbjct: 108 EFVTVCMDKQLLLS--RERLLAAFQQFDSDGSGKITNEEL--GRLFGVTEVDDETWHQVL 163
Query: 110 RLYDK 114
+ DK
Sbjct: 164 QECDK 168
Score = 32.3 bits (74), Expect = 0.020
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53
FDS G I E++ + +DD V+ E + + ++ FEEF++
Sbjct: 131 QFDSDGSGKITNEELGRLFGVTE--VDDETWHQVLQECDKNNDGEVDFEEFVE 181
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 47.6 bits (114), Expect = 6e-08
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+D G I+K +++ L+ G+ + D + +I + + + +I+F++F+Q
Sbjct: 82 TYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGC----- 136
Query: 61 DDDVLEKELKEAFRLYDKEET 81
++ + L + FR YD ++
Sbjct: 137 ---IVLQRLTDIFRRYDTDQD 154
Score = 39.1 bits (92), Expect = 7e-05
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 39/146 (26%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHF-IDDVELETVIDEINVESGDKISFEEFLQVACHFL 59
D + G I +++ L+ + V + ++I + E+ ++F EF V +
Sbjct: 15 RVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKY-- 72
Query: 60 RDDDVLEKELKEAFRLYDKEET-----------------HVSSRDV-IVVCHFLRDDD-- 99
+ + FR YD++ + +S + I++ F R
Sbjct: 73 ------ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQ 126
Query: 100 ----------VQEKELKEAFRLYDKE 115
+ + L + FR YD +
Sbjct: 127 IAFDDFIQGCIVLQRLTDIFRRYDTD 152
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 47.4 bits (113), Expect = 7e-08
Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 20/123 (16%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D K+G + + L +G + + +I+ + ++ F F++V HF
Sbjct: 37 ALDRNKKGYLSRMD----LQQIGALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRP 92
Query: 61 DDDV---------------LEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKE 104
+D +L AF+LYD + +S +++ V + V E++
Sbjct: 93 VEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQ 152
Query: 105 LKE 107
L+
Sbjct: 153 LEN 155
Score = 35.5 bits (82), Expect = 0.001
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 1 MFDSGKRGTIEKEKVRTILNTL-GHFIDDVELETVIDEINVES---GD-KISFEEFLQVA 55
++D + G I + ++ +L + G + + +LE + D E+ GD +SF EF
Sbjct: 122 LYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEF---- 177
Query: 56 CHFLRDDDVLEK 67
L DV +K
Sbjct: 178 TKSLEKMDVEQK 189
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 45.7 bits (109), Expect = 9e-08
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD + G I ++R ++ LG + D E+E +I E +++ ++++EEF+++
Sbjct: 17 VFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVRG 76
Query: 61 DDD-VLEKELKEAFR 74
L+ F
Sbjct: 77 GGGGNGWSRLRRKFS 91
Score = 26.8 bits (60), Expect = 0.82
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 101 QEKELKEAFRLYDKE 115
E+ELKEAF+++DK+
Sbjct: 7 AEEELKEAFKVFDKD 21
Score = 26.0 bits (58), Expect = 1.8
Identities = 14/50 (28%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 66 EKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
E+ELKEAF+++DK++ ++S+ ++ V L + + ++E+++ + D
Sbjct: 8 EEELKEAFKVFDKDQNGYISASELRHVMINL-GEKLTDEEVEQMIKEADL 56
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 45.3 bits (108), Expect = 9e-08
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
MFD+ G I +++ T++ LG EL+ +I+E++ + I FEEFL + ++
Sbjct: 28 MFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMK 87
Query: 61 DD 62
+D
Sbjct: 88 ED 89
Score = 27.6 bits (62), Expect = 0.45
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 101 QEKELKEAFRLYDKE 115
E K AF ++D +
Sbjct: 18 MIAEFKAAFDMFDAD 32
Score = 27.6 bits (62), Expect = 0.51
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 67 KELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKE 115
E K AF ++D + +S++++ V L + ++EL D++
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRML-GQNPTKEELDAIIEEVDED 68
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 47.9 bits (114), Expect = 1e-07
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
G + ++ +L I + L+ + + ++ ++S+ + VA
Sbjct: 130 SSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVAND--- 186
Query: 61 DDDVLEKELKEAFRLYDK 78
L FR D
Sbjct: 187 -----LAALVADFRKIDT 199
Score = 43.6 bits (103), Expect = 3e-06
Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 10/115 (8%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D+ GT+ +++ R LG + + + + D + F E++ +
Sbjct: 196 KIDTNSNGTLSRKEFREHFVRLGF-DKKSVQDALFRYADEDESDDVGFSEYVHLGLC--- 251
Query: 61 DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
L+ + D +++ +S +V V + K+ + F + D
Sbjct: 252 -----LLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDV 301
Score = 30.5 bits (69), Expect = 0.10
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGH-FIDDVELETVIDEINVESGDKISFEEFLQVACHFL 59
D K G + KE+V+ +L + E ++V+ +S++EF+ +
Sbjct: 261 FADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVMLVLLMF 320
Query: 60 RDD 62
DD
Sbjct: 321 HDD 323
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 44.0 bits (105), Expect = 2e-07
Identities = 15/63 (23%), Positives = 35/63 (55%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD+ K G+I+ +++ + LG + E+ +++E + E I F++FL + ++
Sbjct: 15 LFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTEKIK 74
Query: 61 DDD 63
+ D
Sbjct: 75 NRD 77
Score = 26.3 bits (59), Expect = 1.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 101 QEKELKEAFRLYDKE 115
Q++E+KEAF L+D
Sbjct: 5 QKQEIKEAFDLFDTN 19
Score = 24.8 bits (55), Expect = 3.5
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 66 EKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEPMSI 120
++E+KEAF L+D +T + ++ V L DV++ E+ E YD+E I
Sbjct: 6 KQEIKEAFDLFDTNKTGSIDYHELKVAMRAL-GFDVKKPEILELMNEYDREGNGYI 60
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 46.0 bits (109), Expect = 3e-07
Identities = 16/134 (11%), Positives = 41/134 (30%), Gaps = 21/134 (15%)
Query: 1 MFDSGKRGTIEKE-----KVRTILNTLGHFIDDVELETVIDEI-----NVESGDKISFEE 50
D G I + ++N LG + + E ++ G + +
Sbjct: 24 FLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPA 83
Query: 51 FLQVACHFLRDD---------DVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDV 100
+++ D+ ++ F + DK++ ++ +
Sbjct: 84 YIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAA-GIIQ 142
Query: 101 QEKELKEAFRLYDK 114
++ +E FR+ D
Sbjct: 143 SSEDCEETFRVCDI 156
Score = 40.2 bits (94), Expect = 3e-05
Identities = 8/63 (12%), Positives = 21/63 (33%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+ D + G I ++ + G + E +++ ++ +E + F
Sbjct: 117 IVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWY 176
Query: 61 DDD 63
D
Sbjct: 177 TMD 179
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 43.8 bits (104), Expect = 4e-07
Identities = 11/63 (17%), Positives = 29/63 (46%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+FD + E++ T++ LG ++ ++ + + ++ K E FL + + +
Sbjct: 22 LFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLEYGQ 81
Query: 61 DDD 63
+ D
Sbjct: 82 EVD 84
Score = 27.2 bits (61), Expect = 0.68
Identities = 8/15 (53%), Positives = 14/15 (93%)
Query: 101 QEKELKEAFRLYDKE 115
+++E KEAF+L+DK+
Sbjct: 12 EQQEYKEAFQLFDKD 26
Score = 25.3 bits (56), Expect = 2.9
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 67 KELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKE 115
+E KEAF+L+DK+ +++ ++ V L + ++++ E + YDK+
Sbjct: 14 QEYKEAFQLFDKDNDNKLTAEELGTVMRAL-GANPTKQKISEIVKDYDKD 62
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 44.9 bits (106), Expect = 1e-06
Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 21/135 (15%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDV------ELETVIDEINVESGDKISFEEFLQV 54
FD+ G +E ++++ ++ L E++T +D+ KI E V
Sbjct: 24 HFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHV 83
Query: 55 -------ACHFLRDDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFL-------RDDD 99
F +E + +R YD + + + + ++ L DD
Sbjct: 84 LPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDT 143
Query: 100 VQEKELKEAFRLYDK 114
+ +L+D
Sbjct: 144 KLAEYTDLMLKLFDS 158
Score = 30.6 bits (69), Expect = 0.090
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 5/61 (8%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGD-----KISFEEFLQVA 55
++D G I++ ++ +L L I K+ + +
Sbjct: 199 LYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALIL 258
Query: 56 C 56
Sbjct: 259 S 259
Score = 27.5 bits (61), Expect = 1.1
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 38/122 (31%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFID--------DVELETVIDEINVESGDKISFEEFL 52
+D+ G IE E+++ L L + + ++ + + K+ E
Sbjct: 111 KYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMA 170
Query: 53 QVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112
++ + + KE +AF LY
Sbjct: 171 RLLPVQENFLLKFQGI------------------------------KMCGKEFNKAFELY 200
Query: 113 DK 114
D+
Sbjct: 201 DQ 202
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 43.6 bits (103), Expect = 2e-06
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+ GT+ + + + +E + + + I F E++ LR
Sbjct: 31 FLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLR 90
Query: 61 DDDVLEKELKEAFRLYDK 78
LE +LK F++YDK
Sbjct: 91 GT--LEHKLKWTFKIYDK 106
Score = 24.8 bits (54), Expect = 8.8
Identities = 12/83 (14%), Positives = 32/83 (38%), Gaps = 20/83 (24%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGD---------------- 44
++D + G I+++++ I+ ++ +E ++
Sbjct: 103 IYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGD 162
Query: 45 -KISFEEFLQVACHFLRDDDVLE 66
++S EF++ A RD V++
Sbjct: 163 GQLSLNEFVEGA---RRDKWVMK 182
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 41.4 bits (98), Expect = 3e-06
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACH 57
M D+ GTI ++++ L +G + + E++ ++D +++ I + EF+ H
Sbjct: 31 MIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVH 87
Score = 24.0 bits (53), Expect = 8.6
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 101 QEKELKEAFRLYDKE 115
+ LKE F++ D +
Sbjct: 21 EIGGLKELFKMIDTD 35
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 42.1 bits (99), Expect = 8e-06
Identities = 15/132 (11%), Positives = 40/132 (30%), Gaps = 20/132 (15%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDD---------VELETVIDEINVESGDKISFEEF 51
FD G +E ++V + + ++ + VE + + E++
Sbjct: 44 TFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDW 103
Query: 52 LQVACHFLRDDD---------VLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQE 102
++ F + ++ + + D + D + ++ DV +
Sbjct: 104 VEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELK--TMMKAFDVPQ 161
Query: 103 KELKEAFRLYDK 114
+ F D
Sbjct: 162 EAAYTFFEKADT 173
Score = 29.4 bits (66), Expect = 0.21
Identities = 7/54 (12%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+ D GT++ ++++T++ + T ++ + + K+ E + +
Sbjct: 136 VLDDDGDGTVDVDELKTMMKAFD--VPQEAAYTFFEKADTDKSGKLERTELVHL 187
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 40.5 bits (95), Expect = 9e-06
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53
FD+ K TI +E+ R I N + D + + + +E+ V + ++ + +FL
Sbjct: 32 NFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLS 84
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 41.7 bits (98), Expect = 1e-05
Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D G+ GT+ +E + I + + + +I+ E D+++F F++ HF
Sbjct: 37 SLDKGENGTLSREDFQRIPELAINPL----GDRIINAFFSEGEDQVNFRGFMRTLAHFRP 92
Query: 61 DDDV--------------LEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKEL 105
+D +L AFRLYD ++ +S +++ V + ++ +++L
Sbjct: 93 IEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQL 152
Query: 106 KE 107
Sbjct: 153 GS 154
Score = 35.9 bits (83), Expect = 0.001
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 1 MFDSGKRGTIEKEKVRTILNTL-GHFIDDVELETVIDEINVESG----DKISFEEFLQVA 55
++D K I ++++ +L + G I D +L ++ D E+ ISF EF
Sbjct: 121 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEF---- 176
Query: 56 CHFLRDDDVLEK 67
L DV +K
Sbjct: 177 VKVLEKVDVEQK 188
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 41.3 bits (97), Expect = 1e-05
Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 16/129 (12%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFID---------DVELETVIDEINVESGDKISFEEF 51
D G I +E I + E V D++ + G +IS EE
Sbjct: 22 RVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEA 81
Query: 52 LQVACHFLRDDDVLEKELKE-----AFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKEL 105
A L EK + + D ++ +VS + + D+ + +
Sbjct: 82 AVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAV-GPDLTDDKA 140
Query: 106 KEAFRLYDK 114
F D
Sbjct: 141 ITCFNTLDF 149
Score = 35.9 bits (83), Expect = 0.001
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D+ K G + + + L +G + D + T + ++ +IS +EFL FL
Sbjct: 110 CIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFLF 169
Query: 61 DDD 63
+
Sbjct: 170 GLE 172
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 41.3 bits (97), Expect = 1e-05
Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
FD+ + GT++ ++++ L T+G + + ++ + KI+F++++ C L
Sbjct: 111 SFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKR--YSTNGKITFDDYIA-CCVKL- 166
Query: 61 DDDVLEKELKEAFRLYDKEET 81
+ L ++FR D +
Sbjct: 167 ------RALTDSFRRRDTAQQ 181
Score = 34.7 bits (80), Expect = 0.003
Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 41/148 (27%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVE--LETV---IDEINVESGDKISFEEFLQVA 55
+G+ G I+ ++++ L G LET + ++ + + F EF ++
Sbjct: 40 AAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELW 99
Query: 56 CHFLRDDDVLEKELKEAFRLYDKEET-----------------HVSSRDV-IVVCHFLRD 97
++ F +D + + +S + V + + +
Sbjct: 100 AV--------LNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN 151
Query: 98 -----DD-----VQEKELKEAFRLYDKE 115
DD V+ + L ++FR D
Sbjct: 152 GKITFDDYIACCVKLRALTDSFRRRDTA 179
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 41.6 bits (98), Expect = 2e-05
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53
MFD G I +++ + + I ELE++I++++ ++ F EF++
Sbjct: 425 MFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVE 477
Score = 33.5 bits (77), Expect = 0.010
Identities = 17/128 (13%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 1 MFDSGKRGTIEKEKVRTILNTL--------------GHFIDDVELETVIDEINVESGDKI 46
D+ G ++++++ + + ++++++ ++++ I
Sbjct: 339 KLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSI 398
Query: 47 SFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELK 106
+ EF+ A R + + ++ AF+++DK+ + S + D +Q +EL+
Sbjct: 399 EYSEFIASAID--RTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELE 456
Query: 107 EAFRLYDK 114
D
Sbjct: 457 SIIEQVDN 464
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 41.3 bits (97), Expect = 2e-05
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 8 GTIEKEKVRTILNTLGHFID-DVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLE 66
G + +T+L G + ++ V + + + F EF+ +++ +E
Sbjct: 35 GLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEK--ME 92
Query: 67 KELKEAFRLYDK 78
++LK F+LYD
Sbjct: 93 QKLKWYFKLYDA 104
Score = 29.4 bits (66), Expect = 0.20
Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 1 MFDSGKRGTIEKEKVRTIL------NTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
++D+ G+I+K ++ + N + + V +I++ + +++ EEF+
Sbjct: 101 LYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFING 160
Query: 55 ACHFLRDDDVLE 66
+D D+LE
Sbjct: 161 M---AKDQDLLE 169
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 40.5 bits (95), Expect = 2e-05
Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 22/134 (16%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLG---------------HFIDDVELETVIDEINVESGDK 45
FD G I++ + + + + + + + +
Sbjct: 12 TFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQR 71
Query: 46 ISFEEFLQVACHFLRDDD-----VLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDV 100
I+ EEF+ A LRD + L A + D + + L V
Sbjct: 72 ITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTA--RALTAFGV 129
Query: 101 QEKELKEAFRLYDK 114
E ++A D
Sbjct: 130 PEDLARQAAAALDT 143
Score = 31.6 bits (72), Expect = 0.033
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53
+ D+ G + L G + + ++ + K+ E +
Sbjct: 106 VADTDGDGAVTVADTARALTAFG--VPEDLARQAAAALDTDGDGKVGETEIVP 156
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 40.9 bits (96), Expect = 2e-05
Identities = 18/134 (13%), Positives = 40/134 (29%), Gaps = 21/134 (15%)
Query: 1 MFDSGKRGTIEKE-----KVRTILNTLGHFIDDVELETVI-----DEINVESGDKISFEE 50
D G I + I L + + V +E G +I+F +
Sbjct: 28 FLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQ 87
Query: 51 FLQVACHFLR---------DDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDV 100
FL + ++ + F ++DK+ + ++ +
Sbjct: 88 FLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKIS-GISP 146
Query: 101 QEKELKEAFRLYDK 114
+++ + FR D
Sbjct: 147 SQEDCEATFRHCDL 160
Score = 36.3 bits (84), Expect = 8e-04
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGD-KISFEEFLQVACHFL 59
+FD GTI ++ + G + E +++ + +E + F
Sbjct: 121 IFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLD-NAGDLDVDEMTRQHLGFW 179
Query: 60 RDDD 63
D
Sbjct: 180 YTLD 183
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 39.7 bits (93), Expect = 4e-05
Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
FDS + GT++ ++++ L T+G ++ + ++ + KI+F++++ C L
Sbjct: 80 SFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKR--YSTSGKITFDDYIA-CCVKL- 135
Query: 61 DDDVLEKELKEAFRLYDKEET 81
+ L ++FR D +
Sbjct: 136 ------RALTDSFRRRDSAQQ 150
Score = 27.0 bits (60), Expect = 1.3
Identities = 19/150 (12%), Positives = 44/150 (29%), Gaps = 43/150 (28%)
Query: 1 MFD--SGKRGTIEKEKVRTILNTLGHFIDDVE--LETV---IDEINVESGDKISFEEFLQ 53
F +G+ G I+ ++++ L G LET + ++ + + F EF +
Sbjct: 7 YFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKE 66
Query: 54 VACHFLRDDDVLEKELKEAFRLYDKEET----------------HVSSRDVIVVCHFLRD 97
+ ++ F +D + + + +
Sbjct: 67 LWAV--------LNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYS 118
Query: 98 DD------------VQEKELKEAFRLYDKE 115
V+ + L ++FR D
Sbjct: 119 TSGKITFDDYIACCVKLRALTDSFRRRDSA 148
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 40.1 bits (94), Expect = 4e-05
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D + GT+E ++ G + ++ + + ISF EF+ +
Sbjct: 59 GVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKF--- 115
Query: 61 DDDVLEKELKEAFRLYDK 78
+ F + +
Sbjct: 116 -----MELAYNLFVMNAR 128
Score = 36.7 bits (85), Expect = 6e-04
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
M + GT+E ++ L LG F + ++ + ++ C F
Sbjct: 125 MNARARSGTLEPHEILPALQQLG-FYINQRTSLLLHRLFARGMAFCDLNCWIA-ICAFA- 181
Query: 61 DDDVLEKELKEAFRLYDK 78
+ + A+++
Sbjct: 182 ------AQTRSAYQMIFM 193
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 37.5 bits (88), Expect = 6e-05
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
FD K G + ++ R + + ++ +EI+V+ +++ +EF
Sbjct: 9 KFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC 62
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 37.5 bits (88), Expect = 6e-05
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
FD G I +++R + LG + EL+ +I E +V+ ++++EEF ++
Sbjct: 14 AFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARM 67
Score = 26.3 bits (59), Expect = 0.96
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 101 QEKELKEAFRLYDKE 115
++L+ AFR +D++
Sbjct: 4 GLEDLQVAFRAFDQD 18
Score = 25.2 bits (56), Expect = 2.7
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 66 EKELKEAFRLYDKE 79
++L+ AFR +D++
Sbjct: 5 LEDLQVAFRAFDQD 18
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 38.5 bits (90), Expect = 6e-05
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
FD G I+ ++ +L LG +EL+ +I E++ SG+ S+ +FL++
Sbjct: 40 EFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRM 93
Score = 25.4 bits (56), Expect = 3.5
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 101 QEKELKEAFRLYDKE 115
+ + KE + +D
Sbjct: 30 KLEGFKEKYMEFDLN 44
Score = 25.4 bits (56), Expect = 3.8
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 41 ESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKE 79
E D+I+ + D + KE + +D
Sbjct: 6 ERLDEINKQFLDDPKYSSDEDLPSKLEGFKEKYMEFDLN 44
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 37.5 bits (88), Expect = 7e-05
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
FD+ G I ++ L TLG D E++ ++ EI+ + I F EF+ F
Sbjct: 11 RFDTNGDGKISLSELTDALRTLGSTSAD-EVQRMMAEIDTDGDGFIDFNEFIS----FCN 65
Query: 61 DDDVLEKELKEAF 73
+ L K++ + F
Sbjct: 66 ANPGLMKDVAKVF 78
Score = 25.6 bits (57), Expect = 1.9
Identities = 2/15 (13%), Positives = 8/15 (53%)
Query: 65 LEKELKEAFRLYDKE 79
+ +++ F+ +D
Sbjct: 1 MADDMERIFKRFDTN 15
Score = 24.4 bits (54), Expect = 6.0
Identities = 2/14 (14%), Positives = 7/14 (50%)
Query: 102 EKELKEAFRLYDKE 115
+++ F+ +D
Sbjct: 2 ADDMERIFKRFDTN 15
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 37.6 bits (88), Expect = 8e-05
Identities = 14/54 (25%), Positives = 32/54 (59%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+ D G I ++R ++ LG + D E++ +I E +++ ++++EEF+Q+
Sbjct: 37 VEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 90
Score = 33.8 bits (78), Expect = 0.003
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 45 KISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEK 103
S E L D E+E++EAFR+ DK+ ++S+ ++ V L + + ++
Sbjct: 9 HGSSGENLYFQSLMKDTDS--EEEIREAFRVEDKDGNGYISAAELRHVMTNL-GEKLTDE 65
Query: 104 ELKEAFRLYDK 114
E+ E R D
Sbjct: 66 EVDEMIREADI 76
Score = 27.6 bits (62), Expect = 0.43
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 98 DDVQEKELKEAFRLYDKE 115
D E+E++EAFR+ DK+
Sbjct: 24 DTDSEEEIREAFRVEDKD 41
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 39.3 bits (92), Expect = 8e-05
Identities = 21/122 (17%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHF--------IDDVELETVIDEINVESGDKISFEEFL 52
D G ++K+++ N L +F + E++ ++ E++ + I + EF+
Sbjct: 363 KLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFI 422
Query: 53 QVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112
V + E+ L+ AF L+D +++ +++ + + + EK +
Sbjct: 423 SVCMD--KQILFSEERLRRAFNLFDTDKSGKITKEEL--ANLFGLTSISEKTWNDVLGEA 478
Query: 113 DK 114
D+
Sbjct: 479 DQ 480
Score = 37.4 bits (87), Expect = 4e-04
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53
+FD+ K G I KE++ + I + V+ E + + I F+EF+
Sbjct: 443 LFDTDKSGKITKEELANLFGLTS--ISEKTWNDVLGEADQNKDNMIDFDEFVS 493
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 39.0 bits (91), Expect = 9e-05
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 3 DSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDD 62
G I KE+ + L ++ + + D +V+ I F EF++ F
Sbjct: 49 SIIDDGLIHKEEFQLALF-RNRNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSA 107
Query: 63 DVLEKELKEAFRLYDK 78
V EK +K AF+LYD
Sbjct: 108 PVHEK-VKFAFKLYDL 122
Score = 32.4 bits (74), Expect = 0.019
Identities = 13/75 (17%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 1 MFDSGKRGTIEKEKVRTILNTL----GHFIDDVELETVIDEINVES---GD-KISFEEFL 52
++D + G IE+E+++ ++ L + + +E ++D+ V++ D KI +E+
Sbjct: 119 LYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWK 178
Query: 53 QVACHFLRDDDVLEK 67
+ +++
Sbjct: 179 DFV---SLNPSLIKN 190
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 38.5 bits (90), Expect = 1e-04
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D GT+E ++R + +G+ + L T++ + +I F++++ C L
Sbjct: 78 TVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYS--KNGRIFFDDYVA-CCVKL- 133
Query: 61 DDDVLEKELKEAFRLYDKEET 81
+ L + FR D +
Sbjct: 134 ------RALTDFFRKRDHLQQ 148
Score = 31.2 bits (71), Expect = 0.050
Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 41/146 (28%)
Query: 3 DSGKRGTIEKEKVRTILNTLGHFIDDVE--LETV---IDEINVESGDKISFEEFLQVACH 57
+G+ G ++ E+++ L G LET I ++ + K+ F F ++
Sbjct: 9 VAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA 68
Query: 58 FLRDDDVLEKELKEAFRLYDKEET-----------------HVSSRDVIVVCHFLRDDD- 99
KE F D++ + +S + + + +
Sbjct: 69 --------LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGR 120
Query: 100 ----------VQEKELKEAFRLYDKE 115
V+ + L + FR D
Sbjct: 121 IFFDDYVACCVKLRALTDFFRKRDHL 146
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 37.2 bits (87), Expect = 1e-04
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
FD+ G I ++ L TLG + E+ ++ EI+ + ISF+EF R
Sbjct: 19 RFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTDGDGFISFDEFTDF----AR 73
Query: 61 DDDVLEKELKEAF 73
+ L K++ + F
Sbjct: 74 ANRGLVKDVSKIF 86
Score = 25.3 bits (56), Expect = 3.2
Identities = 2/15 (13%), Positives = 6/15 (40%)
Query: 101 QEKELKEAFRLYDKE 115
+ + F+ +D
Sbjct: 9 DIADRERIFKRFDTN 23
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 38.7 bits (90), Expect = 1e-04
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 10/120 (8%)
Query: 3 DSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDD 62
G I KE+ + L + V D + + + FEEF + F +
Sbjct: 60 AVIDDGLINKEEFQLALFKTNKKESL-FADRVFDLFDTKHNGILGFEEFARALSVFHPNA 118
Query: 63 DVLEKELKEAFRLYD--------KEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
+ +K + +F+LYD ++E + D V E + + F D
Sbjct: 119 PIDDK-IHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADT 177
Score = 33.3 bits (76), Expect = 0.010
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 1 MFDSGKRGTIEKEKVRTILNTL----GHFIDDVELETVIDEINVESG----DKISFEEFL 52
++D ++G IE+++V+ ++ G + D +E +ID+ E+ KI EE+
Sbjct: 130 LYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWR 189
Query: 53 QVACHFLRDDDVLEK 67
+ LR +L+
Sbjct: 190 SLV---LRHPSLLKN 201
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 38.2 bits (89), Expect = 2e-04
Identities = 16/117 (13%), Positives = 36/117 (30%), Gaps = 10/117 (8%)
Query: 6 KRGTIEKEKVRTILNTLGHFIDDVEL-ETVIDEINVESGDKISFEEFLQVACHFLRDDDV 64
G + + + + E + + + I F E++ L+
Sbjct: 28 PSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGK-- 85
Query: 65 LEKELKEAFRLYDKEETHVSSRD-------VIVVCHFLRDDDVQEKELKEAFRLYDK 114
++++L+ F+LYD + R I + + E+ F D
Sbjct: 86 VDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDI 142
Score = 27.0 bits (60), Expect = 1.3
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELET-------VIDEINVESGDKISFEEFLQ 53
++D G I++ ++ I+ + E T V D+I++ ++S EEF++
Sbjct: 96 LYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFME 155
Query: 54 VACHFLRDDDVLE 66
+D+ +L+
Sbjct: 156 GV---QKDEVLLD 165
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 38.0 bits (87), Expect = 3e-04
Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 12/119 (10%)
Query: 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRD 61
D K + ++++ L L +DD + E + D + EE +
Sbjct: 20 ADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETFYKMLTQR 79
Query: 62 DDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLR----DDDVQEKELKEAFRLYDKEE 116
E+ AF +S ++ FL+ +++ Y+ E
Sbjct: 80 -----AEIDRAFEEAAGSAETLSVERLV---TFLQHQQREEEAGPALALSLIERYEPSE 130
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 37.4 bits (87), Expect = 3e-04
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 23/135 (17%)
Query: 1 MFDSGKRGTIEKE----KVRTILNTLGHFIDDVELETVIDEINVESGD-----------K 45
+D G +E+ + + I G E++T+ +
Sbjct: 15 RWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGS 74
Query: 46 ISFEEFLQVACHFLRDDD------VLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDD 99
++ E+F++V + + + VL +K + DK + D +L
Sbjct: 75 LTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFA--AWLTALG 132
Query: 100 VQEKELKEAFRLYDK 114
+ + E EAF D
Sbjct: 133 MSKAEAAEAFNQVDT 147
Score = 30.9 bits (70), Expect = 0.057
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ-VACHFL 59
M D G I ++ L LG + E ++++ ++S +E L V
Sbjct: 110 MCDKNADGQINADEFAAWLTALG--MSKAEAAEAFNQVDTNGNGELSLDELLTAVRDFHF 167
Query: 60 RDDDV 64
DV
Sbjct: 168 GRLDV 172
Score = 25.1 bits (55), Expect = 6.9
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 99 DVQEKELKEAFRLYDK 114
+ LK+ F +D
Sbjct: 3 AIASDRLKKRFDRWDF 18
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 37.8 bits (88), Expect = 3e-04
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53
MFDS G I ++ TI +D ++V+ E++ + ++ F+EF Q
Sbjct: 426 MFDSDNSGKISSTELATIFGVSD--VDSETWKSVLSEVDKNNDGEVDFDEFQQ 476
Score = 37.0 bits (86), Expect = 5e-04
Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 15/125 (12%)
Query: 1 MFDSGKRGTIEKEKVRTIL-----------NTLGHFIDDVELETVIDEINVESGDKISFE 49
D G +++ ++ + L + E++ V+D ++ + I +
Sbjct: 343 KMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYS 402
Query: 50 EFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAF 109
EF+ VA R + + L+ AFR++D + + S + DV + K
Sbjct: 403 EFVTVAMD--RKTLLSRERLERAFRMFDSDNSGKISSTEL--ATIFGVSDVDSETWKSVL 458
Query: 110 RLYDK 114
DK
Sbjct: 459 SEVDK 463
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 37.8 bits (88), Expect = 4e-04
Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGH--------FIDDVELETVIDEINVESGDKISFEEFL 52
D G ++++++ + L + E++ ++ + + I + EF+
Sbjct: 354 HIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFV 413
Query: 53 QVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112
VA R + + +L+ AF+ +D++ S D + D ++ K KE
Sbjct: 414 TVAMD--RKSLLSKDKLESAFQKFDQDGNGKISVDEL--ASVFGLDHLESKTWKEMISGI 469
Query: 113 DK 114
D
Sbjct: 470 DS 471
Score = 37.0 bits (86), Expect = 5e-04
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53
FD G I +++ ++ ++ + +I I+ + + FEEF +
Sbjct: 434 KFDQDGNGKISVDELASVFG--LDHLESKTWKEMISGIDSNNDGDVDFEEFCK 484
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 36.8 bits (85), Expect = 4e-04
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
FD G I+ ++ ++ LG +E++ +I E+ D IS+ +F+ + L
Sbjct: 58 EFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNM---MLG 114
Query: 61 DDDVLEKELKEAFRLYDKE 79
+ + +++ +
Sbjct: 115 K----RSAVLKLVMMFEGK 129
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 36.6 bits (85), Expect = 5e-04
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
FD + GTI ++ G +++ +I + E G + F+ F+
Sbjct: 85 QFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGG-NMDFDNFISCL----- 138
Query: 61 DDDVLEKELKEAFRLYDKEET 81
V + AF+ DK+ T
Sbjct: 139 ---VRLDAMFRAFKSLDKDGT 156
Score = 26.6 bits (59), Expect = 1.6
Identities = 21/149 (14%), Positives = 52/149 (34%), Gaps = 45/149 (30%)
Query: 4 SGKRGTIEKEKVRTILNTLGHFIDDVE-----LETV---IDEINVESGDKISFEEFLQVA 55
+G + ++ ILN + D++ ++T + ++ ++ K+ FEEF +
Sbjct: 14 AGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLW 73
Query: 56 CHFLRDDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCH--------------FLRDDD- 99
+ K+ + ++ +D + + + S ++ R D
Sbjct: 74 NN--------IKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDE 125
Query: 100 -------------VQEKELKEAFRLYDKE 115
V+ + AF+ DK+
Sbjct: 126 GGNMDFDNFISCLVRLDAMFRAFKSLDKD 154
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 36.8 bits (85), Expect = 6e-04
Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 13/125 (10%)
Query: 1 MFDSGKRGTIEKEKVRT-ILNTLGHFIDDVELETVIDEINVESGD---------KISFEE 50
FD + G + ++V + L L + + +S F E
Sbjct: 56 KFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVE 115
Query: 51 FLQVACHFLRDDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAF 109
FL+ D EL F D V + L + ++ F
Sbjct: 116 FLEFRLMLCYIYD--FFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALF 173
Query: 110 RLYDK 114
+ DK
Sbjct: 174 KELDK 178
Score = 31.8 bits (72), Expect = 0.035
Identities = 7/54 (12%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLG-HFIDDVELETVIDEINVESGDKISFEEFLQ 53
D+ +++E+ + + L + + E++ ++F+EF
Sbjct: 138 EIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAA 191
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 36.0 bits (83), Expect = 7e-04
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
FD G I+ ++ +L LG +EL+ +I E++ S + S+ +FL++
Sbjct: 56 EFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRM 109
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 9e-04
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 39/96 (40%)
Query: 22 LGHFIDDVELETVIDEINVESGDKISFEEFLQVA-----CHFLRDDDVLEKELKEAFRLY 76
LG ++ + VE F++ L + +L +D+
Sbjct: 65 LG-YVSSL----------VEPSKVGQFDQVLNLCLTEFENCYLEGNDI------------ 101
Query: 77 DKEETHVSSRDVIVVCHFLRDDDVQEKELKEAFRLY 112
H + L+++D + KE + Y
Sbjct: 102 -----HA------LAAKLLQENDTTLVKTKELIKNY 126
Score = 28.9 bits (64), Expect = 0.42
Identities = 3/32 (9%), Positives = 12/32 (37%), Gaps = 6/32 (18%)
Query: 26 IDDVELETVIDEINVESGDKISFEEFLQVACH 57
L+ V++ + +G +++ +
Sbjct: 1821 FSQEALQYVVERVGKRTG------WLVEIVNY 1846
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 35.6 bits (82), Expect = 0.001
Identities = 13/136 (9%), Positives = 40/136 (29%), Gaps = 24/136 (17%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFID---------------DVELETVIDEINVESGDK 45
+D G IE + + + + + + + + ++
Sbjct: 21 FYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQ 80
Query: 46 ISFEEFLQVACHFLRDDD-------VLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDD 98
++ EE+L++ ++ + L K + F + D ++ +
Sbjct: 81 VTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYS--TVYMSY 138
Query: 99 DVQEKELKEAFRLYDK 114
+ + + AF
Sbjct: 139 GIPKSDCDAAFDTLSD 154
Score = 34.0 bits (78), Expect = 0.005
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
+ D+ I+K + T+ + G I + + D ++ ++ E F ++ +
Sbjct: 117 VNDTSGDNIIDKHEYSTVYMSYG--IPKSDCDAAFDTLSDGGKTMVTREIFARLWTEYFV 174
Query: 61 DDD 63
+D
Sbjct: 175 SND 177
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 34.3 bits (79), Expect = 0.002
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53
D+ + G +E+E+ R + L + + E V ++ + I+F+EF +
Sbjct: 35 ACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAITFQEFAR 85
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 35.3 bits (81), Expect = 0.002
Identities = 12/136 (8%), Positives = 39/136 (28%), Gaps = 24/136 (17%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFID---------------DVELETVIDEINVESGDK 45
D G+I+ ++ + E + ++ D
Sbjct: 17 FLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDV 76
Query: 46 ISFEEFLQVACHFLRDDDVLEK-------ELKEAFRLYDKEETHVSSRDVIVVCHFLRDD 98
+S+EE+L + + + + F+ D + + ++ ++
Sbjct: 77 VSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQ--NYCKNF 134
Query: 99 DVQEKELKEAFRLYDK 114
+Q ++ + +
Sbjct: 135 QLQCADVPAVYNVITD 150
Score = 35.3 bits (81), Expect = 0.002
Identities = 6/63 (9%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D G ++ E+ + + ++ V + I + ++ L
Sbjct: 113 GMDVSGDGIVDLEEFQNYCKNFQ--LQCADVPAVYNVITDGGKVTFDLNRYKELYYRLLT 170
Query: 61 DDD 63
Sbjct: 171 SPA 173
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 34.8 bits (80), Expect = 0.003
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 15/122 (12%)
Query: 6 KRGTIEKEKVRTILNTLGHFIDDVEL-ETVIDEINVESGDKISFEEFLQVACHFLRDDDV 64
G + E+ + I + D + E V + I F EF+ R
Sbjct: 39 PSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGK-- 96
Query: 65 LEKELKEAFRLYDKEETHVSSRD------------VIVVCHFLRDDDVQEKELKEAFRLY 112
LE++LK AF +YD + S+ V V D+ EK ++ FR
Sbjct: 97 LEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQM 156
Query: 113 DK 114
D
Sbjct: 157 DT 158
Score = 28.3 bits (63), Expect = 0.58
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHF--------IDDVELETVIDEI----NVESGDKISF 48
M+D G I K ++ I+ + D+ E ++I + K+S
Sbjct: 107 MYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSL 166
Query: 49 EEFLQVACHFLRDDDVLE 66
EEF++ A D ++
Sbjct: 167 EEFIRGA---KSDPSIVR 181
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 33.9 bits (78), Expect = 0.004
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 16/128 (12%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHF--IDDVELETVIDEIN---------VESGDKISFE 49
D K G I + ++ + + ++D + V G I
Sbjct: 14 RIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDET 73
Query: 50 EFLQVACHFLRDDD---VLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELK 106
F+ +++ + V+E L FR D E + SRD F + +
Sbjct: 74 TFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYG--IFFGMLGLDKTMAP 131
Query: 107 EAFRLYDK 114
+F D
Sbjct: 132 ASFDAIDT 139
Score = 32.0 bits (73), Expect = 0.024
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D+ + I +++ LG +D D I+ + +S EEF+ F
Sbjct: 102 AVDTNEDNNISRDEYGIFFGMLG--LDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFFM 159
Query: 61 DDD 63
+D
Sbjct: 160 NDG 162
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 33.0 bits (76), Expect = 0.007
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 22 LGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDK 78
+ D ++ + E+ D +++ F + D ++K+AF + D+
Sbjct: 3 FSGILADADVAAALKA--CEAADSFNYKAFFAKVGLTAKSAD----DIKKAFFVIDQ 53
Score = 29.1 bits (66), Expect = 0.14
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 1 MFDSGKRGTIEKEKVRTIL---NTLGHFIDDVELETVIDEINVESGDKISFEEFLQ 53
+ D K G IE+++++ L + + D E + + + + I +E+
Sbjct: 50 VIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAA 105
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 33.6 bits (77), Expect = 0.007
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGD-KISFEEFLQVACHFLR 60
+S R + E++ ++ + E + + +SFE+FL + F
Sbjct: 37 VESSLRAQVPFEQILSLPELKANPF----KERICRVFSTSPAKDSLSFEDFLDLLSVFSD 92
Query: 61 DDDVLEKELKEAFRLYDKEETHVSSRD 87
K AFR++D ++ +R+
Sbjct: 93 TATPDIK-SHYAFRIFDFDDDGTLNRE 118
Score = 30.9 bits (70), Expect = 0.059
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 1 MFDSGKRGTIEKEKVRTILNTL-----GHFIDDVELETVIDEINVESG----DKISFEEF 51
+FD GT+ +E + ++N L + E++ +ID I ES I+ EF
Sbjct: 106 IFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEF 165
Query: 52 LQVACHFLRDDDVLEK 67
V R D
Sbjct: 166 QHVI---SRSPDFASS 178
Score = 24.3 bits (53), Expect = 10.0
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 73 FRLYDKEET--HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYD 113
R++ +S D + + D + + AFR++D
Sbjct: 66 CRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFD 108
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 31.8 bits (73), Expect = 0.009
Identities = 9/54 (16%), Positives = 22/54 (40%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQV 54
D G + E+V+ ++ ++ L+ + I+ + +I EF +
Sbjct: 8 EIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Score = 25.2 bits (56), Expect = 2.2
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 45 KISFEEFLQVACHFLRDDDVLEKELKEAFRLYDK 78
+S+EE E+ L+ F+ D
Sbjct: 16 AVSYEEVKAFVSKK--RAIKNEQLLQLIFKSIDA 47
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 32.1 bits (74), Expect = 0.010
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLG-HFIDDVELETVIDEINVESGDKISFEEFLQV 54
+FD+ G I+ ++ + I+ +G + D E+E + E + + I EF+ +
Sbjct: 16 VFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDL 70
Score = 28.7 bits (65), Expect = 0.17
Identities = 12/58 (20%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 58 FLRDDDVLEKELKEAFRLYDKEET-HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDK 114
++R DD E+E+ AF+++D + + + + ++ + + E++EA + D+
Sbjct: 1 WVRQDD--EEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADE 56
Score = 26.7 bits (60), Expect = 0.89
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 94 FLRDDDVQEKELKEAFRLYDKE 115
++R D E+E+ AF+++D
Sbjct: 1 WVRQD--DEEEILRAFKVFDAN 20
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 33.3 bits (76), Expect = 0.011
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 2 FDSGKRGTIEKEKVRTI----LNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACH 57
+S R + E++ ++ N I V + D +SFE+FL +
Sbjct: 68 VESSLRAQVPFEQILSLPELKANPFKERICRV-----FSTSP--AKDSLSFEDFLDLLSV 120
Query: 58 FLRDDDVLEKELKEAFRLYDKEETHVSSRD 87
F K AFR++D ++ +R+
Sbjct: 121 FSDTATPDIK-SHYAFRIFDFDDDGTLNRE 149
Score = 31.8 bits (72), Expect = 0.037
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 1 MFDSGKRGTIEKEKVRTILNTL-----GHFIDDVELETVIDEINVESG----DKISFEEF 51
+FD GT+ +E + ++N L + E++ +ID I ES I+ EF
Sbjct: 137 IFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEF 196
Query: 52 LQVACHFLRDDDVLEK 67
V R D
Sbjct: 197 QHVI---SRSPDFASS 209
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 32.1 bits (73), Expect = 0.011
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 5 GKRGTIEKEKVRTILNT-LGHFIDDVELETVIDEINVESGDKISFEEFLQ------VACH 57
G + ++ ++ +L T +I + E+++ + ++F+EFL VA H
Sbjct: 24 GNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAH 83
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 33.3 bits (75), Expect = 0.012
Identities = 14/86 (16%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 2 FDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRD 61
FD K G ++ E R L ++G+ + + E ++ ++ ++F+ F+ D
Sbjct: 734 FDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFIDFMSRETAD 793
Query: 62 DDVLEKELKEAFRLYDKEETHVSSRD 87
D + ++ +F++ ++ +++ +
Sbjct: 794 TDTAD-QVMASFKILAGDKNYITVDE 818
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 32.3 bits (74), Expect = 0.013
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 1 MFDSGKRGTIEKEKVRTILNTL---GHFIDDVELETVIDEINVESGDKISFEEFLQV 54
+ D K G IE++++ +IL + E +T++ + + KI EEF +
Sbjct: 49 ILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTL 105
Score = 28.4 bits (64), Expect = 0.26
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 21 TLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDK 78
++ + +++ I D ++F Q+ + D ++K+ F + DK
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAA--DSFDHKKFFQMVGLKKKSAD----DVKKVFHILDK 52
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 32.2 bits (74), Expect = 0.014
Identities = 6/57 (10%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 22 LGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDK 78
+ +++ +D + E + ++F + + ++K+ F+ D
Sbjct: 3 AKDLLKADDIKKALDAVKAE--GSFNHKKFFALVGLKAMSAN----DVKKVFKAIDA 53
Score = 31.4 bits (72), Expect = 0.021
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 1 MFDSGKRGTIEKEKVRTILNTL---GHFIDDVELETVIDEINVESGDKISFEEFLQ 53
D+ G IE+E+++ +L + G + D E + + + + KI +EF
Sbjct: 50 AIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFET 105
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 32.9 bits (75), Expect = 0.015
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 6 KRGTIEKEKVRTILNTLGHFIDDVEL-ETVIDEINVESGDKISFEEFLQVACHFLRDDDV 64
G + +E + I + D + + + + +SFE+F++ LR
Sbjct: 78 PSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGT-- 135
Query: 65 LEKELKEAFRLYDKEETHVSSRD 87
++++L AF LYD + +++
Sbjct: 136 VQEKLNWAFNLYDINKDGYITKE 158
Score = 26.8 bits (59), Expect = 1.9
Identities = 11/89 (12%), Positives = 35/89 (39%), Gaps = 20/89 (22%)
Query: 1 MFDSGKRGTIEKEKVRTIL--------NTLGHFIDDVELETVIDEINVESG----DKISF 48
++D K G I KE++ I+ + + ++ + ++
Sbjct: 146 LYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTI 205
Query: 49 EEFLQVACHFLRDDDVLEKELKEAFRLYD 77
+EF++ +D++++ + +L++
Sbjct: 206 DEFIESC---QKDENIM-----RSMQLFE 226
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 31.5 bits (72), Expect = 0.019
Identities = 9/57 (15%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 1 MFDSGKRGTIEKEKVRTILNTL---GHFIDDVELETVIDEINVESGDKISFEEFLQV 54
D+ + G ++ ++++ L + + E ++++D + + KI +EF ++
Sbjct: 49 FIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEM 105
Score = 24.9 bits (55), Expect = 4.3
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 22 LGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDK 78
+ + ++ + E + D ++F Q + ++K+ FR D
Sbjct: 2 ITDILSAEDIAAALQE--CQDPDTFEPQKFFQ-TSGLSKMS---ASQVKDIFRFIDN 52
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 31.4 bits (72), Expect = 0.027
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 1 MFDSGKRGTIEKEKVRTILNTL---GHFIDDVELETVIDEINVESGDKISFEEFLQ 53
+ D K G IE+++++ L + D E + + + + + I +EF
Sbjct: 49 VIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAA 104
Score = 28.7 bits (65), Expect = 0.24
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 44 DKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDK 78
D +EF ++K+AF + D+
Sbjct: 22 DSFKHKEFFA-KVGLASKS---LDDVKKAFYVIDQ 52
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.030
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 101 QE-KELKEAFRLY-DKEEP-MSI 120
Q K+L+ + +LY D P ++I
Sbjct: 20 QALKKLQASLKLYADDSAPALAI 42
Score = 26.8 bits (58), Expect = 1.5
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 11 EKEKVRTILNTLGHFIDD 28
EK+ ++ + +L + DD
Sbjct: 18 EKQALKKLQASLKLYADD 35
Score = 25.7 bits (55), Expect = 3.8
Identities = 4/10 (40%), Positives = 8/10 (80%)
Query: 67 KELKEAFRLY 76
K+L+ + +LY
Sbjct: 23 KKLQASLKLY 32
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 31.6 bits (71), Expect = 0.037
Identities = 16/141 (11%), Positives = 42/141 (29%), Gaps = 27/141 (19%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELET----------VIDEINVESGDKISFEE 50
FD+ G IE +++ + + + T + + ++ EE
Sbjct: 19 HFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEE 78
Query: 51 FLQVACHFLRDDDVL---------EKELKEAFRLYD--------KEETHVSSRDVIVVCH 93
+ + ++ E + +R YD E +D+ +
Sbjct: 79 LANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHK 138
Query: 94 FLRDDDVQEKELKEAFRLYDK 114
+ ++ +++DK
Sbjct: 139 KKIPPNKLDEYTDAMMKIFDK 159
Score = 30.4 bits (68), Expect = 0.094
Identities = 10/99 (10%), Positives = 29/99 (29%), Gaps = 18/99 (18%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFID--------DVELETVIDEINVESGDKISFEEFL 52
+D+ G I +++ L L D + ++ + ++ +
Sbjct: 112 KYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLA 171
Query: 53 QV----------ACHFLRDDDVLEKELKEAFRLYDKEET 81
++ +++ ++ F YD T
Sbjct: 172 RILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRT 210
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis
semifasciata} SCOP: a.39.1.4
Length = 109
Score = 30.6 bits (70), Expect = 0.042
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 22 LGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDK 78
+ + ++ I + ++ F + + D ++KE F + DK
Sbjct: 2 MTKVLKADDINKAISA--FKDPGTFDYKRFFHLVGLKGKTDA----QVKEVFEILDK 52
Score = 30.2 bits (69), Expect = 0.058
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 1 MFDSGKRGTIEKEKVRTILNTL---GHFIDDVELETVIDEINVESGDKISFEEFLQ 53
+ D + G IE+E+++ +L G ++D E + ++ + + KI +EF +
Sbjct: 49 ILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAK 104
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 29.9 bits (68), Expect = 0.051
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 1 MFDS--GKRGTIEKEKVRTILNTLGHFI--DDVELETVIDEINVESGDKISFEEFLQV 54
+F + G I KE+++ ++ TLG + L+ +I+E++ ++SFEEFL +
Sbjct: 13 VFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVM 70
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 30.2 bits (68), Expect = 0.100
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 6 KRGTIEKEKVRTILNTLGHFIDDVEL-ETVIDEINVESGDKISFEEFLQVACHFLRDDDV 64
G ++ + I F D + V + + +I F EF+Q R
Sbjct: 39 PSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGT-- 96
Query: 65 LEKELKEAFRLYDKEETHVSSRD 87
L+++L+ AF+LYD + +R+
Sbjct: 97 LDEKLRWAFKLYDLDNDGYITRN 119
Score = 28.7 bits (64), Expect = 0.38
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 20/89 (22%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHF--------IDDVELETVIDEI----NVESGDKISF 48
++D G I + ++ I++ + ++ E +D I + + K++
Sbjct: 107 LYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTL 166
Query: 49 EEFLQVACHFLRDDDVLEKELKEAFRLYD 77
+EF + + D ++ +A LYD
Sbjct: 167 QEFQEGS---KADPSIV-----QALSLYD 187
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 29.4 bits (66), Expect = 0.11
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 4 SGKRGTIEKEKVRTILNT-LGHFIDDVELETVIDEI----NVESGDKISFEEFLQ----- 53
+G +G + KE +R ++ F+++ + +D+I + K+ F+ F
Sbjct: 19 AGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGL 78
Query: 54 -VACH 57
+AC+
Sbjct: 79 TIACN 83
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 29.6 bits (67), Expect = 0.11
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 22 LGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDK 78
L + ++ + + ++ D S ++F Q++ + +LKE FR+ D
Sbjct: 2 LTDILSPSDIAAALRD--CQAPDSFSPKKFFQISGMSKKSSS----QLKEIFRILDN 52
Score = 29.2 bits (66), Expect = 0.13
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 1 MFDSGKRGTIEKEKVRTILNTL---GHFIDDVELETVIDEINVESGDKISFEEFLQ 53
+ D+ + G IE+++++ L + E +T + + + KI EEF +
Sbjct: 49 ILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQE 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.13
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 68 ELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKELKEAF 109
++ R K + + + V+ +VQ + AF
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL--------LNVQNAKAWNAF 262
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand,
acetylation, calcium, metal binding protein; 1.95A
{Gallus gallus} PDB: 2kqy_A
Length = 109
Score = 29.2 bits (66), Expect = 0.14
Identities = 6/57 (10%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 22 LGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDK 78
+ + ++E+ + ++ D +++ F ++K+ F + D+
Sbjct: 3 ITDILSAKDIESALSS--CQAADSFNYKSFFS-TVGLSSKT---PDQIKKVFGILDQ 53
Score = 29.2 bits (66), Expect = 0.15
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLG---HFIDDVELETVIDEINVESGDKISFEEFLQ 53
+ D K G IE+E+++ L + E + + + + KI EEF
Sbjct: 50 ILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQS 105
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 29.8 bits (67), Expect = 0.17
Identities = 18/122 (14%), Positives = 44/122 (36%), Gaps = 15/122 (12%)
Query: 6 KRGTIEKEKVRTILNTLGHFIDDVEL-ETVIDEINVESGDKISFEEFLQVACHFLRDDDV 64
G + +E + I D + + + + FE+F+ LR
Sbjct: 32 PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGT-- 89
Query: 65 LEKELKEAFRLYDKEET-HVSSRDVIVVCHFLR-----------DDDVQEKELKEAFRLY 112
+ ++L+ F LYD + +++ +++ + + +D + + F+
Sbjct: 90 VHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKM 149
Query: 113 DK 114
DK
Sbjct: 150 DK 151
Score = 25.2 bits (55), Expect = 6.2
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 20/89 (22%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHF--------IDDVELETVIDEINVESG----DKISF 48
++D K G I KE++ I+ + + + +D + ++
Sbjct: 100 LYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTL 159
Query: 49 EEFLQVACHFLRDDDVLEKELKEAFRLYD 77
+EFL+ DD+++ + +L+
Sbjct: 160 DEFLES---XQEDDNIM-----RSLQLFQ 180
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 29.9 bits (68), Expect = 0.18
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 35 IDEINVESG-DKISFEEFLQVACHFLRDDDVLEK-------ELKEAFRLYDKEETHVSSR 86
++ ++ F FL DDVLE EL A + K++
Sbjct: 260 QADLAAKAAKPTGEFPVFLDY------QDDVLEALSAAVRPELSAALTIAGKQDREAELD 313
Query: 87 DVI--VVCHFLRDDDVQEKELKEAFRLYDKEE 116
V L + + +EKE+ A+R K
Sbjct: 314 RVKALAAEKLLPEFEGREKEISAAYRALTKSL 345
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 29.0 bits (65), Expect = 0.18
Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 5 GKRGTIEKEKVRTILNT-LGHFIDDVE-LETVIDEINVESGDKISFEEFLQ------VAC 56
G++ ++ + + ++ L H + DV L+ + ++V ++ F E+ +
Sbjct: 36 GRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGELAKEI 95
Query: 57 H 57
Sbjct: 96 R 96
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 29.4 bits (66), Expect = 0.22
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 8 GTIEKEKVRTILNTLGHFID-DVELETVIDEINVESGDKISFEEFLQVACHFLRDDDVLE 66
G + K + + I F D E V + + + I F+EF+ R + L
Sbjct: 41 GHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGE--LN 98
Query: 67 KELKEAFRLYDKEETHVSSRD 87
+L AF+LYD + + S D
Sbjct: 99 DKLIWAFQLYDLDNNGLISYD 119
Score = 29.4 bits (66), Expect = 0.24
Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 20/90 (22%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFI--------DDVELETVIDEI----NVESGDKISF 48
++D G I +++ I++ + + D+ E +++I + +++
Sbjct: 107 LYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTL 166
Query: 49 EEFLQVACHFLRDDDVLEKELKEAFRLYDK 78
EEF + + RD ++ A LYD
Sbjct: 167 EEFCEGS---KRDPTIV-----SALSLYDG 188
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 29.4 bits (65), Expect = 0.24
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
D + GT+ ++R L G + + ++ + I F+ F++
Sbjct: 613 EIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFADDEL-IIDFDNFVRCLVRL-- 669
Query: 61 DDDVLEKELKEAFRLYDKEET 81
+ L + F+ D E T
Sbjct: 670 ------EILFKIFKQLDPENT 684
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 27.8 bits (62), Expect = 0.40
Identities = 8/62 (12%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 5 GKRGTIEKEKVRTILNT---LGHFIDDVELETVIDEINVESGDKISFEEFLQ------VA 55
G + T+ K++++ ++ +G + D E+ ++++++ +++F+E++ +
Sbjct: 24 GDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALI 83
Query: 56 CH 57
+
Sbjct: 84 YN 85
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating,
protein binding; HET: AMP; 2.39A {Clostridium
thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Length = 427
Score = 28.7 bits (64), Expect = 0.41
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 12/52 (23%)
Query: 60 RDDDVLEKELKEAFRLYDK--------EETHVSSRDVIVVCHFLRDDDVQEK 103
+ + +LE EAF + E+ H+ SR V++VC +D V EK
Sbjct: 60 KKEGMLE-HPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVC---KDSQVAEK 107
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 28.0 bits (62), Expect = 0.50
Identities = 9/66 (13%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 3 DSGKRGTIEKEKVRTILNT-----LGHFIDDVELETVIDEINVESGDKISFEEFLQ---- 53
G + + K +++ +L LG D+ + ++ ++ +++ F+E+
Sbjct: 34 KEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 93
Query: 54 --VACH 57
+ C+
Sbjct: 94 IAMMCN 99
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 28.5 bits (63), Expect = 0.51
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 6 KRGTIEKEKVRTILNTLGHFIDDVEL-ETVIDEINVESGDKISFEEFLQVACHFLRDDDV 64
G ++++ + I + D + + + + I FE+F+ LR
Sbjct: 105 PTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGT-- 162
Query: 65 LEKELKEAFRLYDKEETHVSSRD 87
+ ++LK AF LYD + +++
Sbjct: 163 VHEKLKWAFNLYDINKDGCITKE 185
Score = 25.0 bits (54), Expect = 7.4
Identities = 12/89 (13%), Positives = 35/89 (39%), Gaps = 20/89 (22%)
Query: 1 MFDSGKRGTIEKEKVRTIL--------NTLGHFIDDVELETVIDEINVESG----DKISF 48
++D K G I KE++ I+ + + ++ + ++
Sbjct: 173 LYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTI 232
Query: 49 EEFLQVACHFLRDDDVLEKELKEAFRLYD 77
+EFL+ +D++++ + +L++
Sbjct: 233 DEFLETC---QKDENIM-----NSMQLFE 253
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 27.3 bits (61), Expect = 0.55
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 5 GKRGTIEKEKVRTILNT-LGHFIDDVE-LETVIDEINVESGDKISFEEFLQ 53
G + KE+++ ++ + L+ + E++ ++SFEEF
Sbjct: 21 GDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQV 71
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 27.5 bits (61), Expect = 0.58
Identities = 9/66 (13%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 3 DSGKRGTIEKEKVRTILNT-----LGHFIDDVELETVIDEINVESGDKISFEEFLQ---- 53
G + + K +++ +L LG D+ + ++ ++ +++ F+E+
Sbjct: 22 KEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 81
Query: 54 --VACH 57
+ C+
Sbjct: 82 IAMMCN 87
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 27.5 bits (61), Expect = 0.61
Identities = 8/66 (12%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 3 DSGKRGTIEKEKVRTILNT-----LGHFIDDVELETVIDEINVESGDKISFEEFLQ---- 53
G + + K +++ +L LG D+ + ++ ++ +++ F+E+
Sbjct: 25 KEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSS 84
Query: 54 --VACH 57
+ +
Sbjct: 85 IAMMSN 90
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 28.0 bits (62), Expect = 0.62
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 6 KRGTIEKEKVRTILNTLGHFIDDVEL-ETVIDEINVESGDKISFEEFLQVACHFLRDDDV 64
G + +E + I D + + + + FE+F+ LR
Sbjct: 65 PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGT-- 122
Query: 65 LEKELKEAFRLYDKEETHVSSRD 87
+ ++L+ F LYD + +++
Sbjct: 123 VHEKLRWTFNLYDINKDGYINKE 145
Score = 25.3 bits (55), Expect = 5.2
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 20/90 (22%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHF--------IDDVELETVIDEINVESG----DKISF 48
++D K G I KE++ I+ + + + +D + ++
Sbjct: 133 LYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTL 192
Query: 49 EEFLQVACHFLRDDDVLEKELKEAFRLYDK 78
+EFL+ DD+++ + +L+
Sbjct: 193 DEFLESC---QEDDNIM-----RSLQLFQN 214
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813,
glucosamine-6-phosphate deamina PSI, protein structure
initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Length = 342
Score = 27.9 bits (63), Expect = 0.77
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 13 EKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVAC 56
++ + +F+ ++E + EI D++ F V C
Sbjct: 22 DQKNELKKFFENFVLNLEKTEIFSEIQKNLTDEVLF-----VGC 60
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 28.2 bits (62), Expect = 0.78
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
F++ + GTI ++ G ++ +I + E+G + F+ F+
Sbjct: 812 RFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYSDETG-NMDFDNFISCLVRL-- 868
Query: 61 DDDVLEKELKEAFRLYDKEET 81
+ AFR DK T
Sbjct: 869 ------DAMFRAFRSLDKNGT 883
Score = 26.7 bits (58), Expect = 2.2
Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 12/122 (9%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLR 60
FD K G++ ++R + G + + ++ + I F+ F++
Sbjct: 615 KFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFADDEL-IIDFDNFVRCLVRL-- 671
Query: 61 DDDVLEKELKEAFRLYDKEET---HVSSRDVIVVCHFLRDDDVQEKELKEAFRLYDKEEP 117
+ L + F+ D E T + + + E + E
Sbjct: 672 ------EILFKIFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEAN 725
Query: 118 MS 119
S
Sbjct: 726 ES 727
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 27.1 bits (60), Expect = 0.79
Identities = 7/64 (10%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 5 GKRGTIEKEKVRTILNT-LGHFI----DDVELETVIDEINVESGDKISFEEFLQ------ 53
G + + + +++ +L L + + + + ++ ++ F E+++
Sbjct: 24 GDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLC 83
Query: 54 VACH 57
+ CH
Sbjct: 84 LYCH 87
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 26.7 bits (59), Expect = 0.99
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 4 SGKRGTIEKEKVRTILNT-LGHFIDDVE------LETVIDEINVESGDKISFEEFLQ--- 53
+ + I+K + T++ +F+ + L V ++ + KI F EFL
Sbjct: 20 TRRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLG 79
Query: 54 ---VACH 57
H
Sbjct: 80 DIATDYH 86
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 27.2 bits (60), Expect = 1.1
Identities = 7/79 (8%), Positives = 21/79 (26%), Gaps = 11/79 (13%)
Query: 6 KRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDK---ISFEEFLQVACHFLRDD 62
G + + + ++ + + D +SF +
Sbjct: 88 SPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGRVSFPSLVCFL------- 140
Query: 63 DVLEKELKEAFRLYDKEET 81
+ + + + FR K+
Sbjct: 141 -MRLEAMAKTFRNLSKDGK 158
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 26.8 bits (59), Expect = 1.2
Identities = 12/65 (18%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 5 GKRGTIEKEKVRTILNT-LGHFI-----DDVELETVIDEINVESGDKISFEEFLQ----- 53
G T+ + + + ++ L +F+ ++ +E ++++++ + ++SFEEF+
Sbjct: 26 GHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMARL 85
Query: 54 -VACH 57
A H
Sbjct: 86 TWASH 90
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 26.4 bits (59), Expect = 1.3
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGH------FIDDVELETVIDEINVESGDKISFEEFLQV 54
D+ G + +++T + TL +I + S KIS EEFL
Sbjct: 15 KLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNA 74
Score = 26.0 bits (58), Expect = 1.3
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 101 QEKELKEAFRLYDKE 115
+ EL+ AF+ D
Sbjct: 5 VKAELEAAFKKLDAN 19
Score = 25.3 bits (56), Expect = 3.4
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 65 LEKELKEAFRLYDKE 79
++ EL+ AF+ D
Sbjct: 5 VKAELEAAFKKLDAN 19
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 26.7 bits (59), Expect = 1.3
Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 5 GKRGTIEKEKVRTILNT-LGHFIDDVELETVIDEI----NVESGDKISFEEFLQ------ 53
G + + K +++ +L+ L F+ + E + ++ + S ++ F+E+
Sbjct: 25 GDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLALIT 84
Query: 54 VACH 57
V +
Sbjct: 85 VMSN 88
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 26.3 bits (58), Expect = 1.4
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 11/66 (16%)
Query: 3 DSGKRGTIEKEKVRTILNT-LGHFIDDVELETVIDEI----NVESGDKISFEEFLQ---- 53
S + I K R +L L H + D D++ + +ISF+E+
Sbjct: 24 YSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGG 83
Query: 54 --VACH 57
Sbjct: 84 ITGPIA 89
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 26.3 bits (58), Expect = 1.4
Identities = 7/61 (11%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 5 GKRGTIEKEKVRTILNT--LGHFIDDVELETVIDEINVESGDKISFEEFLQ------VAC 56
G + T+ +++++ ++ + + ++ ++ ++ S +I F+E+ +A
Sbjct: 24 GSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTMLCMAY 83
Query: 57 H 57
+
Sbjct: 84 N 84
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 27.4 bits (61), Expect = 1.5
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 22/57 (38%)
Query: 13 EKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRDDD---VLE 66
EK+ ++ ++++V V+DE+ H+L D + V+E
Sbjct: 130 EKLDSLWRHRPEWLNEVNY-FVLDEL------------------HYLNDPERGPVVE 167
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 25.9 bits (57), Expect = 1.9
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 5 GKRGTIEKEKVRTILNT-LGHFIDDVELETVIDEI----NVESGDKISFEEFLQ------ 53
G T+ K +++ ++ L F+ + + +D++ + ++ F EF+
Sbjct: 23 GSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAAIT 82
Query: 54 VACH 57
ACH
Sbjct: 83 SACH 86
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 25.9 bits (57), Expect = 1.9
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 5 GKRGTIEKEKVRTILNT-LGHFIDDVELETVIDEI----NVESGDKISFEEFLQ------ 53
G + + K +++ +LN L F+ + ++++I + +++ F EF+
Sbjct: 24 GDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAALT 83
Query: 54 VACH 57
VAC+
Sbjct: 84 VACN 87
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 26.9 bits (59), Expect = 1.9
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFI----------DDVELETVIDEINVESG----DKI 46
++D GTI K +V I+ + I D+ E ++I G DK+
Sbjct: 115 LYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKL 174
Query: 47 SFEEFLQVACHFLRDDDVLE 66
+ +EF++ L + ++L
Sbjct: 175 TEKEFIEGT---LANKEILR 191
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 25.9 bits (57), Expect = 1.9
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 5 GKRGTIEKEKVRTILNT-----LGHFIDDVELETVIDEINVESGDKISFEEFLQ------ 53
G + + K++++ +L T L D ++ ++ E++ ++ F+EF+
Sbjct: 23 GDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82
Query: 54 VACH 57
VAC+
Sbjct: 83 VACN 86
>3l0i_A DRRA, SIDM; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide
exchang GDI-displacement factor; 2.85A {Legionella
pneumophila}
Length = 363
Score = 26.7 bits (58), Expect = 1.9
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 50 EFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHFLRDDDVQEKE 104
E + V H +R D + L+E F LY ++ H+S+ I LR+ ++ +E
Sbjct: 49 EVVSVKTHIMRPIDFMLMGLREEFNLYSEDGAHLSAPGTI---RLLREKNLLPEE 100
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 25.9 bits (57), Expect = 2.2
Identities = 14/64 (21%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 5 GKRGTIEKEKVRTILNT-LGHFIDDVELETVIDEI----NVESGDKISFEEFLQ------ 53
G + ++K +++ ++N L HF+++++ + V+D++ + + F+EF+
Sbjct: 23 GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMIT 82
Query: 54 VACH 57
ACH
Sbjct: 83 TACH 86
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 25.5 bits (56), Expect = 2.4
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 5 GKRGTIEKEKVRTILNT-LGHFI----DDVELETVIDEINVESGDKISFEEFLQ------ 53
G T+ K +++ +L L + I D ++ + ++ +++ F+EF+
Sbjct: 26 GHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIAL 85
Query: 54 VACH 57
A H
Sbjct: 86 KAAH 89
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 25.6 bits (56), Expect = 2.6
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 3 DSGKRGTIEKEKVRTILNT-LGHFIDDVELETVIDEI----NVESGDKISFEEFLQ---- 53
G I K + +NT L F + + V+D + +++S ++ F+EFL
Sbjct: 25 RDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGG 84
Query: 54 --VACH 57
+ACH
Sbjct: 85 LAIACH 90
>2plc_A PI-PLC, phosphatidylinositol-specific phospholipase C; hydrolase,
phospholipid degradation, virulence factor of human
pathogen; 2.00A {Listeria monocytogenes} SCOP: c.1.18.2
PDB: 1aod_A*
Length = 274
Score = 26.4 bits (58), Expect = 2.9
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 14 KVRTILNTLGHFIDDVELETVIDEINVESGDKISFEEFLQVACHFLRD 61
+ +L T+ F+ ET+I + E SF+ +Q + +D
Sbjct: 81 SLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKD 128
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 26.1 bits (58), Expect = 3.8
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 58 FLRDDDVLEKELKEAFRLYDKEETHVSSRDVIVVCHF-LRDDDVQE--KELKEAFR 110
F ++ + EL F +Y E + + + + + + + LK
Sbjct: 301 FPILENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVA 356
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive
transcription elongation factor, P-TEFB; 1.50A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 258
Score = 25.7 bits (56), Expect = 3.9
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 79 EETHVSSRDVIVVCHFLRDDDVQEKE 104
EET +D+I L +D +
Sbjct: 98 EETPKKCKDIIKTARSLLNDVQFGQF 123
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel,
peptide synthesis, transition state analogue; HET: P2S
ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB:
1v4g_A* 2d32_A* 2d33_A*
Length = 518
Score = 25.2 bits (54), Expect = 7.3
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 34 VIDEINVESGDKISFEEFLQ 53
+ +E+ D F +L+
Sbjct: 496 ERRQQEMEAADTEPFAVWLE 515
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha and
beta proteins; HET: AMP; 2.00A {Francisella tularensis
subsp}
Length = 525
Score = 25.2 bits (54), Expect = 7.5
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 39 NVESGDKISFEEFLQ 53
+ + DKIS +E++
Sbjct: 501 ELVANDKISLDEYIN 515
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
degradation, kinase, transferase; 2.60A {Escherichia
coli} PDB: 1sro_A
Length = 723
Score = 25.1 bits (56), Expect = 8.0
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 35 IDEINVESG-DKISFEEFLQVACHFLRDDDVLEKELKEAFRLYDKEETHVSSRDVI--VV 91
I+E+ E+G + ++ R + E L +A+R+ DK+E + + +
Sbjct: 225 INELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETI 284
Query: 92 CHFLRDDD-VQEKELKEAFRLYDKEE 116
L +D+ + E EL E +K
Sbjct: 285 ATLLAEDETLDENELGEILHAIEKNV 310
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 24.9 bits (55), Expect = 9.2
Identities = 6/50 (12%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 1 MFDSGKRGTIEKEKVRTILNTLGHFIDDVELETVIDEINVESGDKISFEE 50
MF T + K L + + ++ + ++ + ++ E
Sbjct: 271 MFARPLNQTDDMIKHHEYLEDITNKVEQNIYQPTTTKV----IEGLTTEN 316
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.385
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,984,304
Number of extensions: 119309
Number of successful extensions: 1177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 447
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)