BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1571
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q29M88|PGAP2_DROPS Post-GPI attachment to proteins factor 2 OS=Drosophila
pseudoobscura pseudoobscura GN=GA17744 PE=3 SV=2
Length = 255
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 91/154 (59%)
Query: 7 VPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLYLAQIAA 66
V NYLPSVSAAIGNY Q+ ++ AI LH R+ Y EYY+E ++R L +A
Sbjct: 57 VVNYLPSVSAAIGNYEPQKTIWRLAIFLHLPLRLAVAKIYLEYYKEHIRRSRRLLGILAC 116
Query: 67 LLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNLES 126
LN++E ++L L+ SA +Y H F+ FI SE YM+++ + + R++ E
Sbjct: 117 FLNVVEDLALFCLSFWTSADSYETHRNAFVVFIACSECYMLMSYLLNRNARKVVLLPHEE 176
Query: 127 RSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
+S K F++N+ F +AGYCF+RHNA CE G
Sbjct: 177 KSLRYKRNLFLVNVLAFGLAGYCFVRHNARCEAG 210
>sp|Q9VPT7|PGAP2_DROME Post-GPI attachment to proteins factor 2 OS=Drosophila melanogaster
GN=CG3876 PE=1 SV=2
Length = 255
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 91/154 (59%)
Query: 7 VPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLYLAQIAA 66
V NYLPSVSAAIGNY Q+ V+ AI LH R+ Y E+YRE ++R L +A
Sbjct: 57 VTNYLPSVSAAIGNYEPQKTVWRLAIFLHLPLRLAVAKIYLEHYREHIRRSRRLLGILAC 116
Query: 67 LLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNLES 126
LN++E ++L L+ SA +Y H F+ FI SE YM+V+ + + ++ E
Sbjct: 117 FLNVVEDLALFCLSFWTSADHYETHRNAFVVFIACSECYMLVSYLLNRNIQKTVLLPHEE 176
Query: 127 RSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
+S K F++N+ F +AGYCF+RHN++CE G
Sbjct: 177 KSLRYKRNLFLVNVIAFGLAGYCFVRHNSHCEAG 210
>sp|A6H7B8|PGAP2_BOVIN Post-GPI attachment to proteins factor 2 OS=Bos taurus GN=PGAP2
PE=2 SV=1
Length = 254
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 7 VPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLY--LAQI 64
VPNYLPSVS+AIG QR V+ I LH+ PR + AY +Y + Y L ++
Sbjct: 56 VPNYLPSVSSAIGGEVPQRYVWRFCIGLHSAPRFLVAFAYWNHYLSCTSPCAGYRPLCRL 115
Query: 65 AALLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNL 124
LN++E V+LL LT V S+ ++ IHE FI FI +S +M++TC +++ ++ +
Sbjct: 116 NFGLNVVENVALLVLTYVSSSEDFTIHENAFIVFIASSLSHMLLTCILWRLTKKHTVSQE 175
Query: 125 ESRSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
+ +S+N K + F++N F A + RHN YCE G
Sbjct: 176 DRKSYNWKQRLFIINFVSFFTALAVYFRHNMYCEAG 211
>sp|Q3TQR0|PGAP2_MOUSE Post-GPI attachment to proteins factor 2 OS=Mus musculus GN=Pgap2
PE=1 SV=2
Length = 254
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 7 VPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLY--LAQI 64
VPNYLPSVS+AIG QR V+ I LH+ PR + AY +Y Y L +I
Sbjct: 56 VPNYLPSVSSAIGGEVPQRYVWRFCIGLHSAPRFLTAFAYWNHYLSCASPCPGYRLLCRI 115
Query: 65 AALLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNL 124
LN++E ++LL LT V S+ ++ IHE FI FI S YM++TC +++ ++ +
Sbjct: 116 NFSLNVVENLALLVLTYVSSSEDFTIHENAFIVFIAASLGYMLLTCILWRLTKKHTVSQE 175
Query: 125 ESRSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
+ +S++ K + FV+N F A + RHN YCE G
Sbjct: 176 DRKSYSWKQRLFVINFISFFSALAVYFRHNMYCEAG 211
>sp|Q9UHJ9|PGAP2_HUMAN Post-GPI attachment to proteins factor 2 OS=Homo sapiens GN=PGAP2
PE=2 SV=1
Length = 315
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 7 VPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLY--LAQI 64
VPNYLPSVS+AIG QR V+ I LH+ PR + AY +Y S Y L ++
Sbjct: 117 VPNYLPSVSSAIGGEVPQRYVWRFCIGLHSAPRFLVAFAYWNHYLSCTSPCSCYRPLCRL 176
Query: 65 AALLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNL 124
LN++E ++LL LT V S+ ++ IHE FI FI +S +M++TC +++ ++ +
Sbjct: 177 NFGLNVVENLALLVLTYVSSSEDFTIHENAFIVFIASSLGHMLLTCILWRLTKKHTVSQE 236
Query: 125 ESRSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
+ +S++ K + F++N F A + RHN YCE G
Sbjct: 237 DRKSYSWKQRLFIINFISFFSALAVYFRHNMYCEAG 272
>sp|Q2ABP3|PGAP2_RAT Post-GPI attachment to proteins factor 2 OS=Rattus norvegicus
GN=Pgap2 PE=2 SV=1
Length = 254
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 7 VPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLY--LAQI 64
VPNYLPSVS+AIG QR V+ I LH+ PR + AY +Y Y L ++
Sbjct: 56 VPNYLPSVSSAIGGEVPQRYVWRFCIGLHSAPRFLTAFAYWNHYLSCASPCPGYRLLCRL 115
Query: 65 AALLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNL 124
LN++E ++LL LT V S+ ++ IHE FI FI S YM++TC +++ ++ +
Sbjct: 116 NFSLNVVENLALLVLTYVSSSEDFTIHENAFIVFIAASLSYMLLTCILWRLTKKHTVSQE 175
Query: 125 ESRSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
+ +S++ K + F++N F A + RHN YCE G
Sbjct: 176 DRKSYSWKQRLFIINFISFFSALAVYFRHNMYCEAG 211
>sp|Q2ABP2|PGAP2_CRIGR Post-GPI attachment to proteins factor 2 OS=Cricetulus griseus
GN=Pgap2 PE=2 SV=1
Length = 254
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 7 VPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLY--LAQI 64
VPNYLPSVS+AIG QR V+ I LH+ PR + AY +Y Y L ++
Sbjct: 56 VPNYLPSVSSAIGGEVPQRYVWRFCIGLHSAPRFLAAFAYWNHYLSCASPCPGYRLLCRL 115
Query: 65 AALLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNL 124
LN++E ++LL LT V S+ ++ IHE FI FI S YM++TC +++ ++ +
Sbjct: 116 NFSLNVVENLALLVLTYVSSSEDFTIHENAFIVFIAASLSYMLLTCILWRLTKKHTVSQE 175
Query: 125 ESRSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
+ +S++ K + F++N F A + RHN YCE G
Sbjct: 176 DRKSYSWKQRLFIINFISFFSALAVYFRHNMYCEAG 211
>sp|Q5M9A7|PGAP2_XENLA Post-GPI attachment to proteins factor 2 OS=Xenopus laevis GN=pgap2
PE=2 SV=1
Length = 254
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Query: 7 VPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLY--LAQI 64
VPNYLPSVSAAIG T QR ++ I LH+ PR + +AY +YY+ Y L I
Sbjct: 57 VPNYLPSVSAAIGGETPQRYLWRLCIGLHSAPRFLVAMAYLKYYQGTPCSNPYYPRLCHI 116
Query: 65 AALLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNL 124
LLN EI L+ LT V S+ N+ +H+ F++F+ S YM VTC +++ R+ +
Sbjct: 117 NFLLNSCEIFFLMLLTYVSSSENHEVHKLGFMSFMFFSLGYMFVTCTLWRMTRKWSGSPE 176
Query: 125 ESRSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
E S+ K + F + F + ++ HN YCEPG
Sbjct: 177 ERTSYAWKKRLFGFYLLMFLASIVVYIWHNMYCEPG 212
>sp|A8XST1|PGAP2_CAEBR Post-GPI attachment to proteins factor 2 OS=Caenorhabditis briggsae
GN=tag-189 PE=3 SV=2
Length = 263
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 7 VPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYRE------VLKRRSLY 60
V N+LPS+SAA+ YT ++ ++ I LH GPR++ +A++ + ++ +
Sbjct: 50 VANWLPSISAAVSTYTPEKYIWRILIGLHIGPRLVVAVAFRNFLMSSPLRPYTGSKQFKF 109
Query: 61 LAQIAALLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLP 120
L IA LN++E LLALT + S+ ++ +H KCF F ++S +YMI++ W++ + +
Sbjct: 110 LCNIACGLNLLENFFLLALTSISSSEDHSLHAKCFGGFAISSIIYMILSTWLFSESGRRR 169
Query: 121 FNNLESRSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
NL RS+ K+ + + CF + GY + RHN YCEPG
Sbjct: 170 ATNLGERSYEYKILGASIFVVCFFLGGYLYWRHNTYCEPG 209
>sp|Q22141|PGAP2_CAEEL Post-GPI attachment to proteins factor 2 OS=Caenorhabditis elegans
GN=tag-189 PE=3 SV=2
Length = 263
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 7 VPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYY-----REVLKRRSL-Y 60
V N+LPS+SAA+ YT ++ ++ I LH GPR++ +A++ + R + + L +
Sbjct: 50 VANWLPSISAAVSTYTPEKYIWRILIGLHIGPRLVVAIAFRNFLLGSPLRPLTGHKRLRF 109
Query: 61 LAQIAALLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLP 120
L +A LN++E LLALT + S+ ++ +H KCF F + S +YM+++ W++ + +
Sbjct: 110 LCNLACFLNLLENFFLLALTSISSSEDHSLHAKCFGGFAICSIIYMLLSTWLFNETGRRT 169
Query: 121 FNNLESRSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
NL RS K+ + + CF + Y + RHN YCEPG
Sbjct: 170 ATNLGQRSHEYKILGAAIFVLCFFLGAYLYWRHNTYCEPG 209
>sp|A8KBG2|PGAP2_XENTR Post-GPI attachment to proteins factor 2 OS=Xenopus tropicalis
GN=pgap2 PE=2 SV=1
Length = 252
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 7 VPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLY--LAQI 64
VPNYLPSVSAAIG T QR ++ I LH+ PR + +AY YY+ Y L +
Sbjct: 55 VPNYLPSVSAAIGGETPQRYIWRLCIGLHSAPRFLVGVAYLHYYQGTPCSSPAYPRLCHL 114
Query: 65 AALLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNL 124
LLN EI L+ LT V S+ NY +H+ F+ F+L S YM VTC +++ R+ +
Sbjct: 115 NFLLNCCEIFFLILLTYVSSSENYEVHKLGFMAFMLFSVGYMFVTCSLWRVARKGSGSLE 174
Query: 125 ESRSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
E S+ K + F + F + ++ HN YCE G
Sbjct: 175 ERTSYAWKKRLFGFYLLMFLSSILVYIWHNMYCEAG 210
>sp|Q5BL33|PGAP2_DANRE Post-GPI attachment to proteins factor 2 OS=Danio rerio GN=pgap2
PE=2 SV=1
Length = 231
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 87/156 (55%), Gaps = 3/156 (1%)
Query: 7 VPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRR--SLYLAQI 64
VPNYLPS+SAAI + T +R ++ +I LH+ PR + AY +YR RR L+
Sbjct: 57 VPNYLPSISAAI-SLTPERYIWRFSIGLHSAPRFLVAAAYLSFYRGRFSRRLTEQLLSGF 115
Query: 65 AALLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNL 124
LL + E V LL LT V S Y +H+ FI FI +S +M+ TC ++ + ++
Sbjct: 116 TFLLALSENVGLLLLTYVSSTETYSVHKSGFILFIGSSLFHMLCTCKLWSLIVKYSISSE 175
Query: 125 ESRSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
E S+ KL+ F+ N C +A Y + RHN YCE G
Sbjct: 176 EMMSYWFKLRLFLFNGGCCVLAVYFYRRHNTYCEEG 211
>sp|Q9VWK6|PGP2L_DROME Post-GPI attachment to proteins factor 2-like OS=Drosophila
melanogaster GN=CG7990 PE=2 SV=3
Length = 347
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 17/162 (10%)
Query: 9 NYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKR-------RSLYL 61
N +PS+SA G + QR + +I LH GPRI Y+ YYR L+R ++ L
Sbjct: 136 NIIPSISAITG-VSPQRYFWRFSIALHIGPRIPIAFVYKNYYRSQLRRISPAQVPQTSLL 194
Query: 62 AQIAALLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTC---WIYKKERQ 118
+ +LN IEI SL +T + + NYP+HE+ FITF++ S YM+ T I +
Sbjct: 195 ITLILVLNCIEIASLGGVTYISNRENYPVHERIFITFMVCSLCYMLATIKLNGILNAGQA 254
Query: 119 LPFNNLESRSFNLKLKCFVLNIFCFSIAGYC--FLRHNAYCE 158
L E + ++K K + + S G F +H YC
Sbjct: 255 LS----EKQLLSIKWKKILFAVSILSTVGLLVFFAKHRFYCH 292
>sp|Q9HDZ2|CWH43_SCHPO Protein cwh43 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cwh43 PE=2 SV=2
Length = 971
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 9 NYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLYLAQIAALL 68
+ PSVSA IG++ +R VF I L PR++ LL + + + R S+ I L
Sbjct: 53 EWFPSVSATIGDWYPERSVFQWLIALTATPRLLVLLLW--FTLSGISRPSVI---ITTAL 107
Query: 69 NIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNLESRS 128
++ V S ++ H+ I +++++ + I+ + P N++ SR
Sbjct: 108 GVLRTALCGGWVYVTSTDDHDWHDIFMIGYLISNAPWFILV------SKCSPVNSMASRI 161
Query: 129 FNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
N+ FVL IF Y +++H PG
Sbjct: 162 RNIGSALFVLTIFPLI---YWYIQHKFKHIPG 190
>sp|P25618|CWH43_YEAST Protein CWH43 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CWH43 PE=1 SV=2
Length = 953
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 10 YLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLYLAQIAALLN 69
+ PSVSA IG+ +R +F I L PR + LL + YY L +++ L+
Sbjct: 48 WFPSVSATIGDRYPERSIFQILIALTAFPRFLLLLGH--YY--------LNQSKVCFLVG 97
Query: 70 IIEIVSLLALTLVPSAVNYPIHEKCFITFILTS 102
++ VS + S ++ IH+ IT+I+ +
Sbjct: 98 VLRTVSCGGWVYITSTDDHDIHDIFMITYIVLT 130
>sp|Q57555|Y090_METJA Uncharacterized protease MJ0090 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0090 PE=3 SV=1
Length = 407
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 35 HTGPRIIYLLAYQEYYREVLKRRSLYLAQIAALLNIIE----IVSLLALTLVPSAVNYPI 90
H + +YL Y LK+ + +I N E IVS L + + + +
Sbjct: 57 HDNNKKVYLCTNTVVYENDLKK----VEEILDFANSAEVDAVIVSDLGTMQLANELGLRV 112
Query: 91 HE--KCFITFILTSEVYMIVTCWIYKKERQLPFN-------NLESRSFNLKLKCFVLNIF 141
H +C +T LT++ Y + R+L N NL+ +L+L+ FV
Sbjct: 113 HASVQCNVTNSLTAKFYSKFAKRVILS-RELTLNQIKEIRENLKKDKVDLELEGFVHGAL 171
Query: 142 CFSIAGYCFL 151
C +I+G CFL
Sbjct: 172 CVAISGRCFL 181
>sp|P22543|VPS34_YEAST Phosphatidylinositol 3-kinase VPS34 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=VPS34 PE=1 SV=1
Length = 875
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 100 LTSEVYMIVTCWIYKKERQLPFNNLESRSFNLK 132
LT ++ + W Y +Q+PF NLE+ FNLK
Sbjct: 101 LTFSSHLRIILWEYNGSKQIPFFNLETSIFNLK 133
>sp|Q6LQG2|RIHA_PHOPR Pyrimidine-specific ribonucleoside hydrolase RihA OS=Photobacterium
profundum GN=rihA PE=3 SV=1
Length = 310
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 89 PIHEKCFITFILTSEVYMIVTCWI 112
P+H+ C I ++L E++ + CW+
Sbjct: 238 PLHDPCTIAWLLEPELFASINCWV 261
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.142 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,064,973
Number of Sequences: 539616
Number of extensions: 1904380
Number of successful extensions: 4819
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4786
Number of HSP's gapped (non-prelim): 24
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)