Query psy1571
Match_columns 164
No_of_seqs 109 out of 194
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 19:29:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3979|consensus 100.0 1.8E-36 3.8E-41 252.9 8.3 162 2-163 78-245 (296)
2 PF10277 Frag1: Frag1/DRAM/Sfk 99.9 4.3E-25 9.3E-30 175.0 16.2 150 3-156 35-184 (215)
3 KOG4320|consensus 96.4 0.23 5E-06 41.3 14.4 127 7-139 32-164 (253)
4 PF14143 YrhC: YrhC-like prote 50.0 80 0.0017 21.5 6.1 54 90-155 10-63 (72)
5 COG5046 MAF1 Protein involved 34.6 20 0.00042 30.1 1.0 27 2-31 198-225 (282)
6 PF10277 Frag1: Frag1/DRAM/Sfk 25.7 2.8E+02 0.0061 21.1 6.2 34 79-112 41-74 (215)
7 PF12297 EVC2_like: Ellis van 24.8 1.2E+02 0.0026 27.5 4.3 43 74-116 46-91 (429)
8 PF12823 DUF3817: Domain of un 24.7 1.4E+02 0.003 20.9 3.9 51 89-158 42-92 (92)
9 PF09600 Cyd_oper_YbgE: Cyd op 24.6 51 0.0011 22.9 1.6 14 18-32 51-64 (82)
10 PRK15489 nfrB bacteriophage N4 22.3 7.1E+02 0.015 24.0 9.2 30 7-40 314-344 (703)
11 PF12273 RCR: Chitin synthesis 21.0 1.3E+02 0.0028 22.1 3.3 21 94-114 4-24 (130)
12 PF13965 SID-1_RNA_chan: dsRNA 20.5 6.8E+02 0.015 23.5 8.5 122 16-153 386-507 (570)
No 1
>KOG3979|consensus
Probab=100.00 E-value=1.8e-36 Score=252.90 Aligned_cols=162 Identities=24% Similarity=0.330 Sum_probs=156.1
Q ss_pred CccCCCCcccchhhhhcCCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh------hhhHHHHHHHHHHHHHHHh
Q psy1571 2 KLEQLVPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKR------RSLYLAQIAALLNIIEIVS 75 (164)
Q Consensus 2 ~t~c~V~N~lPSiSAaIg~~~Pqr~iW~~~Ialh~~pRll~~~~y~~~y~~~~~~------~~~~l~~l~~~~~~~e~~s 75 (164)
.|+|++.|+|||||++||.++|||++|++++.+|.|||+..+..+|+.+.+...+ +++.++++.+..|.+|+++
T Consensus 78 ~t~C~~~~~LpsIS~ai~~~~~er~lw~ll~~~hv~~rff~~~~~w~~l~~~~~~~~~~~~~~~ll~~L~~~v~~~e~l~ 157 (296)
T KOG3979|consen 78 FTTCGEVNYLPSISRAINSLPPERYLWGLLASSHVPPRFFVNNPYWNILLETNGGYKTALVLYRLLRYLYFYVNVVENLF 157 (296)
T ss_pred ecceeccccCCccchhhccCCHHHHHHHHHHHHhcCceeeEechhHHHhhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999998886542 6899999999999999999
Q ss_pred hheeEeeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1571 76 LLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNLESRSFNLKLKCFVLNIFCFSIAGYCFLRHNA 155 (164)
Q Consensus 76 l~gltyvsS~e~~~~H~~~fi~f~~~s~~~M~~~~~l~~~~~~~~~~~~~~~S~~~K~~l~~~~~~~~~~~~y~f~~H~~ 155 (164)
+.+++.++++||+++|+++|++|++|+..+|+.++.+++...+.+.+|++++|++||...+.+.+.+.+...++|++||.
T Consensus 158 l~~ls~v~~re~~~lha~~Fg~f~ic~~~~ml~s~il~~~~~~~y~~~~g~~s~~~kil~~lv~~~~~~s~~~~~~~~~~ 237 (296)
T KOG3979|consen 158 LLLLSAVSEREIGKLHALGFGVFLICSHILMLDSTILFTWTWKGYVSPHGPLSWRWKILTFLVMVFSFPSGAIFYIRHNV 237 (296)
T ss_pred HHHHHhhccccCceeehhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCCcceeehhhHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccc
Q psy1571 156 YCEPGDIN 163 (164)
Q Consensus 156 ~C~pgaYs 163 (164)
+|+||||+
T Consensus 238 ~C~~~ay~ 245 (296)
T KOG3979|consen 238 YCEPGAYT 245 (296)
T ss_pred hhhhhHHH
Confidence 99999996
No 2
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=99.93 E-value=4.3e-25 Score=175.01 Aligned_cols=150 Identities=23% Similarity=0.383 Sum_probs=136.6
Q ss_pred ccCCCCcccchhhhhcCCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhheeEee
Q psy1571 3 LEQLVPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLYLAQIAALLNIIEIVSLLALTLV 82 (164)
Q Consensus 3 t~c~V~N~lPSiSAaIg~~~Pqr~iW~~~Ialh~~pRll~~~~y~~~y~~~~~~~~~~l~~l~~~~~~~e~~sl~gltyv 82 (164)
|| +++| +|+||+ +|+.+||+++|++++.+++++|++...++++++++..++..+.+..+.+++++++.+++++++++
T Consensus 35 ~~-~~~~-~P~IS~-~G~~~Pe~~if~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~gl~~~a~~ 111 (215)
T PF10277_consen 35 TH-GGQN-LPYISD-IGAYPPESYIFRFGLNISAFFRLLIVYLRYRYVRQLASKCSRWLNILSLVFGLLSAIGLILLAIF 111 (215)
T ss_pred CC-CCCC-cCchhH-hhCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45 6666 999999 88999999999999999999999999999998887765555569999999999999999999999
Q ss_pred ecCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy1571 83 PSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNLESRSFNLKLKCFVLNIFCFSIAGYCFLRHNAY 156 (164)
Q Consensus 83 sS~e~~~~H~~~fi~f~~~s~~~M~~~~~l~~~~~~~~~~~~~~~S~~~K~~l~~~~~~~~~~~~y~f~~H~~~ 156 (164)
+++|++++|+.+++.|.+++.+||.+++.+.++.++.. +++++++.+.|+.+....+++.+....++.+|+.+
T Consensus 112 ~~~~~~~~H~~~a~~ff~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~i~~i~~~~~~~~~~~~ 184 (215)
T PF10277_consen 112 QSTEHPTVHYIGAVLFFVSSFIYMLLQTILSYRLGPHY-SNKSRRSFRLRLILLVISIICFISFIVFFILHNFY 184 (215)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999887766543 46788899999999999999999999999999876
No 3
>KOG4320|consensus
Probab=96.42 E-value=0.23 Score=41.30 Aligned_cols=127 Identities=16% Similarity=0.161 Sum_probs=85.9
Q ss_pred CCcccchhhhhcCCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-hh-----hhhHHHHHHHHHHHHHHHhhheeE
Q psy1571 7 VPNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVL-KR-----RSLYLAQIAALLNIIEIVSLLALT 80 (164)
Q Consensus 7 V~N~lPSiSAaIg~~~Pqr~iW~~~Ialh~~pRll~~~~y~~~y~~~~-~~-----~~~~l~~l~~~~~~~e~~sl~glt 80 (164)
|.-.+|-+|-+- ++.||..++++. +..+.=++.+++|-||-+-.. .+ .-......+++.|++-.+++....
T Consensus 32 ~~~~~pyisd~~-~y~Pesc~f~i~--~Ni~~vll~l~~yvRYrQl~~~~~h~~~~~i~~~n~~~l~~G~~aalgl~vVa 108 (253)
T KOG4320|consen 32 VAPRFPYLSDAG-TYIPESCLFGIM--INIGAVLLALIIYVRYRQLLELFRHANENSIFKGNTVALWIGLAAALGLSVVA 108 (253)
T ss_pred cccccccccccc-ccCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhheeee
Confidence 444678888776 599999998765 566677778888887633221 11 112455677777776666666666
Q ss_pred eeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHHHHHHHHH
Q psy1571 81 LVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNLESRSFNLKLKCFVLN 139 (164)
Q Consensus 81 yvsS~e~~~~H~~~fi~f~~~s~~~M~~~~~l~~~~~~~~~~~~~~~S~~~K~~l~~~~ 139 (164)
-...+.-..+|+.+-..=..++.+||..++++-+. ..+......-...|..+.+.-
T Consensus 109 NfQet~i~~VH~~ga~laF~~g~LY~~~Qa~LSy~---~~p~~~~~~v~~iR~~lavi~ 164 (253)
T KOG4320|consen 109 NFQETAIRIVHDIGAVLAFGAGLLYMWFQAILSYQ---RDPNIPTLIVFYIRLVLAVIC 164 (253)
T ss_pred ecccccchhhhhhhhhHHhcchHHHHHHHHHHHhc---cCCCcccchhhHHHHHHHHHH
Confidence 67777778899999998889999999999998532 223334444555565554443
No 4
>PF14143 YrhC: YrhC-like protein
Probab=49.99 E-value=80 Score=21.48 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1571 90 IHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNLESRSFNLKLKCFVLNIFCFSIAGYCFLRHNA 155 (164)
Q Consensus 90 ~H~~~fi~f~~~s~~~M~~~~~l~~~~~~~~~~~~~~~S~~~K~~l~~~~~~~~~~~~y~f~~H~~ 155 (164)
.-..+|+.+.+++.+|..+.++ .+.++---|-.++..-.+.+..+++|+.|-..
T Consensus 10 yKrf~~vLLAvs~FlYiG~viP------------~~~~~~~~~~~m~~~~~~~l~~a~~f~~rs~~ 63 (72)
T PF14143_consen 10 YKRFAFVLLAVSTFLYIGTVIP------------IGAKETAQKYIMMGAICIFLAGAFLFFRRSKK 63 (72)
T ss_pred HHHHHHHHHHHHHHHHHHhhCC------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777888777665543 13333444666666666677777777666443
No 5
>COG5046 MAF1 Protein involved in Mod5 protein sorting [Posttranslational modification, protein turnover, chaperones]
Probab=34.63 E-value=20 Score=30.14 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.6
Q ss_pred CccCCCCcccc-hhhhhcCCCchhHHHHHHH
Q psy1571 2 KLEQLVPNYLP-SVSAAIGNYTLQRIVFTSA 31 (164)
Q Consensus 2 ~t~c~V~N~lP-SiSAaIg~~~Pqr~iW~~~ 31 (164)
+++|.|+|+-| |+|-+=+ -.-+||-+.
T Consensus 198 lSdc~v~~y~p~S~S~~~~---~~~~vw~~v 225 (282)
T COG5046 198 LSDCEVLNYMPYSISTTHK---NSDDVWEFV 225 (282)
T ss_pred hhhhHHhhccCcccccccC---ChHHHHHHH
Confidence 58999999999 9999988 567899875
No 6
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=25.69 E-value=2.8e+02 Score=21.15 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=22.1
Q ss_pred eEeeecCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1571 79 LTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWI 112 (164)
Q Consensus 79 ltyvsS~e~~~~H~~~fi~f~~~s~~~M~~~~~l 112 (164)
+-+||+.++.+--...|..-+..+...+++...+
T Consensus 41 ~P~IS~~G~~~Pe~~if~~~~~~~a~~~~~~~~~ 74 (215)
T PF10277_consen 41 LPYISDIGAYPPESYIFRFGLNISAFFRLLIVYL 74 (215)
T ss_pred cCchhHhhCcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777766666666665555555555554
No 7
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=24.82 E-value=1.2e+02 Score=27.47 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=29.8
Q ss_pred HhhheeEe---eecCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1571 74 VSLLALTL---VPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKE 116 (164)
Q Consensus 74 ~sl~glty---vsS~e~~~~H~~~fi~f~~~s~~~M~~~~~l~~~~ 116 (164)
-++...+. ++---||.+|..+|+++.+-|++--.+.+.+...+
T Consensus 46 ~a~~t~~~~e~~~vlpNHGlhaagFfvaflvslVL~~l~~f~l~r~ 91 (429)
T PF12297_consen 46 KALFTITVEEKISVLPNHGLHAAGFFVAFLVSLVLTWLCFFLLART 91 (429)
T ss_pred hhhheeeccccceeccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544 55667999999998888887777776666654443
No 8
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=24.67 E-value=1.4e+02 Score=20.94 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy1571 89 PIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNLESRSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCE 158 (164)
Q Consensus 89 ~~H~~~fi~f~~~s~~~M~~~~~l~~~~~~~~~~~~~~~S~~~K~~l~~~~~~~~~~~~y~f~~H~~~C~ 158 (164)
.+|-..|+. |.+....++... .+..| +.....+++++|-.-|+..++...|
T Consensus 42 ~iHG~lF~~-------Yl~~~~~~~~~~-----------rW~~~-~~~~~llas~iPfg~f~~er~~~re 92 (92)
T PF12823_consen 42 PIHGFLFML-------YLVAALDLASKY-----------RWSLK-RTLLALLASVIPFGTFWFERWLRRE 92 (92)
T ss_pred hhHHHHHHH-------HHHHHHHHHHHc-----------CCChH-HHHHHHHHHcccccHHHHHHHHhcC
Confidence 589999998 555554544221 12223 3455778888888888888776543
No 9
>PF09600 Cyd_oper_YbgE: Cyd operon protein YbgE (Cyd_oper_YbgE); InterPro: IPR011846 This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria [].
Probab=24.63 E-value=51 Score=22.91 Aligned_cols=14 Identities=7% Similarity=0.382 Sum_probs=12.2
Q ss_pred cCCCchhHHHHHHHH
Q psy1571 18 IGNYTLQRIVFTSAI 32 (164)
Q Consensus 18 Ig~~~Pqr~iW~~~I 32 (164)
+| +.|++.+||...
T Consensus 51 vG-F~Pr~~~Wr~lF 64 (82)
T PF09600_consen 51 VG-FRPRSWIWRLLF 64 (82)
T ss_pred cc-cchhHHHHHHHH
Confidence 46 999999999884
No 10
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=22.26 E-value=7.1e+02 Score=24.03 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=24.1
Q ss_pred CCcccc-hhhhhcCCCchhHHHHHHHHHHhhHHHH
Q psy1571 7 VPNYLP-SVSAAIGNYTLQRIVFTSAIVLHTGPRI 40 (164)
Q Consensus 7 V~N~lP-SiSAaIg~~~Pqr~iW~~~Ialh~~pRl 40 (164)
+.|++| +..|++. ||.=|-.+|+++..-++
T Consensus 314 tre~fP~~~~a~~r----Qk~RW~~Gi~~q~~~~~ 344 (703)
T PRK15489 314 VREYFPDTFRTAYR----QKARWVLGIAFQGWEQM 344 (703)
T ss_pred ehhhCcHHHHHHHH----HHHHHHhHHHHhhHHHh
Confidence 578888 4777787 99999999998875443
No 11
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.00 E-value=1.3e+02 Score=22.08 Aligned_cols=21 Identities=10% Similarity=0.236 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy1571 94 CFITFILTSEVYMIVTCWIYK 114 (164)
Q Consensus 94 ~fi~f~~~s~~~M~~~~~l~~ 114 (164)
+|+++++..++.+++.+..-|
T Consensus 4 l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777666655433
No 12
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=20.53 E-value=6.8e+02 Score=23.46 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=60.9
Q ss_pred hhcCCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhheeEeeecCCChHHHHHHH
Q psy1571 16 AAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLYLAQIAALLNIIEIVSLLALTLVPSAVNYPIHEKCF 95 (164)
Q Consensus 16 AaIg~~~Pqr~iW~~~Ialh~~pRll~~~~y~~~y~~~~~~~~~~l~~l~~~~~~~e~~sl~gltyvsS~e~~~~H~~~f 95 (164)
+.+|-+.+...+|-+...+|..-=+.+.. ..||.+.-+...+... +.+ .+=+.++.+...+....|..- ..-
T Consensus 386 ~~~gv~~~~~~f~iiF~ii~i~~~~~ls~--q~Yy~g~~~~~~r~~~---l~~-~i~N~~~~~~gl~~~~~df~~--~~l 457 (570)
T PF13965_consen 386 GLIGVLEKSSIFWIIFSIIHILSCFFLSL--QIYYMGRWKLKSRFFL---LVL-NIINWALAIYGLISSPRDFAS--FLL 457 (570)
T ss_pred HhhhheeccceehhHHHHHHHHHHHHHHh--hheeeeeccccchhhh---hhH-HHHHHHHHHHHHhcCcCcHHH--HHH
Confidence 44666777888998888888776444433 2234432111122222 112 223334444433556666553 334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1571 96 ITFILTSEVYMIVTCWIYKKERQLPFNNLESRSFNLKLKCFVLNIFCFSIAGYCFLRH 153 (164)
Q Consensus 96 i~f~~~s~~~M~~~~~l~~~~~~~~~~~~~~~S~~~K~~l~~~~~~~~~~~~y~f~~H 153 (164)
..++.-.++|.+.=+. +|.. ..|+. ...-..+.++.+++-..+.|||.+.
T Consensus 458 ~i~i~n~~lY~~fYii-mKi~------~~E~i-~~~~~~~~~~~~~~W~~a~yff~~~ 507 (570)
T PF13965_consen 458 AIFIGNLLLYLFFYII-MKIR------HREKI-LLKPIIYLVLAFVSWGFALYFFFQN 507 (570)
T ss_pred HHHHHHHHHHHHHHHH-HHHh------hcChh-HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445555555443322 3331 11332 2223345555677778888998753
Done!