Query psy1571
Match_columns 164
No_of_seqs 109 out of 194
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:29:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rqh_A G1 to S phase transitio 14.5 38 0.0013 17.6 0.1 9 9-17 3-11 (26)
2 2l58_A Activator of apoptosis 12.1 38 0.0013 18.5 -0.4 13 17-29 18-30 (33)
3 3m95_A Autophagy related prote 10.5 36 0.0012 24.4 -1.1 16 7-22 88-103 (125)
4 3tlw_A GLR4197 protein, GLIC; 9.7 6.4E+02 0.022 19.7 7.5 26 21-50 196-221 (321)
5 1vzv_A Assemblin, varicella-zo 8.3 63 0.0022 25.5 -0.5 10 8-17 103-112 (221)
6 3rui_B Autophagy-related prote 8.2 50 0.0017 23.3 -1.1 16 7-22 82-97 (118)
7 2pbk_A KSHV protease; KSHV, KS 7.9 68 0.0023 25.4 -0.5 7 9-15 106-112 (228)
8 1o6e_A Capsid protein P40; pro 7.8 68 0.0023 25.5 -0.5 7 9-15 110-116 (235)
9 1at3_A Herpes simplex virus ty 7.5 72 0.0025 25.6 -0.5 10 8-17 122-131 (247)
10 2ks9_A Substance-P receptor; w 6.5 8.3E+02 0.029 18.3 5.9 13 139-151 257-269 (364)
No 1
>2rqh_A G1 to S phase transition 1; protein-protein complex, GTP-binding, nucleotide-binding, Al splicing, cytoplasm, methylation, mRNA processing; NMR {Mus musculus}
Probab=14.51 E-value=38 Score=17.62 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=6.4
Q ss_pred cccchhhhh
Q psy1571 9 NYLPSVSAA 17 (164)
Q Consensus 9 N~lPSiSAa 17 (164)
-+.|+|||+
T Consensus 3 PFVPnv~a~ 11 (26)
T 2rqh_A 3 PFVPNVHAA 11 (26)
T ss_dssp SSCCCTTCC
T ss_pred CccCcchHH
Confidence 367888876
No 2
>2l58_A Activator of apoptosis harakiri; BCL-2, BH3-only, intrinsically disorder protein; NMR {Synthetic}
Probab=12.05 E-value=38 Score=18.47 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=10.5
Q ss_pred hcCCCchhHHHHH
Q psy1571 17 AIGNYTLQRIVFT 29 (164)
Q Consensus 17 aIg~~~Pqr~iW~ 29 (164)
+.||.--||..||
T Consensus 18 algdel~~rtmwr 30 (33)
T 2l58_A 18 ALGDELHQRTMWR 30 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4688888999987
No 3
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=10.51 E-value=36 Score=24.42 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=12.8
Q ss_pred CCcccchhhhhcCCCc
Q psy1571 7 VPNYLPSVSAAIGNYT 22 (164)
Q Consensus 7 V~N~lPSiSAaIg~~~ 22 (164)
|-|.+||.|+++|+.+
T Consensus 88 Vnn~lPs~s~~m~~lY 103 (125)
T 3m95_A 88 VNNVIPPTSATMGSLY 103 (125)
T ss_dssp BTTBCCCTTSBHHHHH
T ss_pred ECCccCCccchHHHHH
Confidence 4578999999998655
No 4
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=9.74 E-value=6.4e+02 Score=19.68 Aligned_cols=26 Identities=4% Similarity=0.112 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy1571 21 YTLQRIVFTSAIVLHTGPRIIYLLAYQEYY 50 (164)
Q Consensus 21 ~~Pqr~iW~~~Ialh~~pRll~~~~y~~~y 50 (164)
+.|.-+++++. .|-=++.++.+.-++
T Consensus 196 R~~~~y~~~~~----iP~~li~~ls~~sF~ 221 (321)
T 3tlw_A 196 RQYFSYIPNII----LPMLFILFISWTAFW 221 (321)
T ss_dssp ECCTTHHHHTH----HHHHHHHHHHGGGGG
T ss_pred EeeceeehhHH----HHHHHHHHHhheeec
Confidence 45556666654 344444444444455
No 5
>1vzv_A Assemblin, varicella-zoster virus protease; hydrolase, serine protease, viral protease, varicella-zoster coat protein; 3.00A {Human herpesvirus 3} SCOP: b.57.1.1
Probab=8.31 E-value=63 Score=25.49 Aligned_cols=10 Identities=70% Similarity=1.032 Sum_probs=7.1
Q ss_pred Ccccchhhhh
Q psy1571 8 PNYLPSVSAA 17 (164)
Q Consensus 8 ~N~lPSiSAa 17 (164)
-|||||+|=.
T Consensus 103 ~~~LPslSLS 112 (221)
T 1vzv_A 103 TNYLPSVSLS 112 (221)
T ss_dssp HHHSCEEEEE
T ss_pred hcccccceee
Confidence 4788887754
No 6
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=8.18 E-value=50 Score=23.30 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=12.8
Q ss_pred CCcccchhhhhcCCCc
Q psy1571 7 VPNYLPSVSAAIGNYT 22 (164)
Q Consensus 7 V~N~lPSiSAaIg~~~ 22 (164)
|-|.+||.|+++|+.+
T Consensus 82 Vn~~~p~~~~~m~~lY 97 (118)
T 3rui_B 82 VNDTLPPTAALMSAIY 97 (118)
T ss_dssp BTTBCCCTTSBHHHHH
T ss_pred ECCccCCccchHHHHH
Confidence 4578999999998654
No 7
>2pbk_A KSHV protease; KSHV, KSHV protease, herpesvirus protease, viral protease, V protein; 1.73A {Human herpesvirus} SCOP: b.57.1.1 PDB: 1fl1_A 3njq_A*
Probab=7.86 E-value=68 Score=25.42 Aligned_cols=7 Identities=43% Similarity=0.980 Sum_probs=4.0
Q ss_pred cccchhh
Q psy1571 9 NYLPSVS 15 (164)
Q Consensus 9 N~lPSiS 15 (164)
|||||+|
T Consensus 106 ~~LPslS 112 (228)
T 2pbk_A 106 TWLPGLS 112 (228)
T ss_dssp HHCCEEE
T ss_pred ccCccce
Confidence 5555555
No 8
>1o6e_A Capsid protein P40; proteinase, beta-barrel, hydrolase, serine protease, structu proteomics in europe, spine, structural genomics; 2.3A {Human herpesvirus 4} SCOP: b.57.1.1
Probab=7.82 E-value=68 Score=25.51 Aligned_cols=7 Identities=57% Similarity=1.027 Sum_probs=3.8
Q ss_pred cccchhh
Q psy1571 9 NYLPSVS 15 (164)
Q Consensus 9 N~lPSiS 15 (164)
|||||+|
T Consensus 110 ~~LPslS 116 (235)
T 1o6e_A 110 AWLPSLS 116 (235)
T ss_dssp HHSCEEE
T ss_pred ccCccce
Confidence 5555554
No 9
>1at3_A Herpes simplex virus type II protease; serine protease, viral protease, HSV2 protease; HET: DFP; 2.50A {Human herpesvirus 2} SCOP: b.57.1.1
Probab=7.52 E-value=72 Score=25.58 Aligned_cols=10 Identities=70% Similarity=1.032 Sum_probs=6.3
Q ss_pred Ccccchhhhh
Q psy1571 8 PNYLPSVSAA 17 (164)
Q Consensus 8 ~N~lPSiSAa 17 (164)
-|||||+|=.
T Consensus 122 ~~~LPsLSLS 131 (247)
T 1at3_A 122 TNYLPSVSLS 131 (247)
T ss_dssp HHHSCEEEEE
T ss_pred hcccccceee
Confidence 4677776644
No 10
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=6.54 E-value=8.3e+02 Score=18.35 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q psy1571 139 NIFCFSIAGYCFL 151 (164)
Q Consensus 139 ~~~~~~~~~y~f~ 151 (164)
++++-.|.....+
T Consensus 257 f~~~~~P~~i~~~ 269 (364)
T 2ks9_A 257 FAICWLPFHIFFL 269 (364)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555544443333
Done!