RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1571
(164 letters)
>gnl|CDD|220672 pfam10277, Frag1, Frag1/DRAM/Sfk1 family. This family includes
Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor
activating protein 1) is a protein that is conserved
from fungi to humans. There are four potential
iso-prenylation sites throughout the peptide, viz CILW,
CIIW and CIGL. Frag1 is a membrane-spanning protein that
is ubiquitously expressed in adult tissues suggesting an
important cellular function. Dram is a family of
proteins conserved from nematodes to humans with six
hydrophobic transmembrane regions and an Endoplasmic
Reticulum signal peptide. It is a lysosomal protein that
induces macro-autophagy as an effector of p53-mediated
death, where p53 is the tumour-suppressor gene that is
frequently mutated in cancer. Expression of Dram is
stress-induced. This region is also part of a family of
small plasma membrane proteins, referred to as Sfk1,
that may act together with or upstream of Stt4p to
generate normal levels of the essential phospholipid
PI4P, thus allowing proper localisation of Stt4p to the
actin cytoskeleton.
Length = 216
Score = 95.4 bits (238), Expect = 4e-25
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 4/153 (2%)
Query: 8 PNYLPSVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLAYQEYYREVLKRRSLYLAQIAAL 67
+ P +S IG Y + +F+ I L R++ L R + R L +A +
Sbjct: 38 DEFFPYISD-IGAYPPESCIFSIGIALGAFLRLLLLFLRYLRLRPLASRSERVLNILALV 96
Query: 68 LNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSEVYMIVTCWIYKKERQLPFNNLESR 127
II + L + S ++ +H+ I F + +YM++ + + + +
Sbjct: 97 FGIIGALGLGGVANFQSTEDHDVHDIGAILFFVGGLLYMLLQTALSYRLGP---TPVLRK 153
Query: 128 SFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPG 160
SF LKL ++ G F++HN +C PG
Sbjct: 154 SFRLKLILSIIAFISAIPFGVFFIQHNVHCGPG 186
>gnl|CDD|238111 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in DNA
topology by catalysing the concerted breakage and
rejoining of DNA strands during normal cellular growth.
Length = 445
Score = 29.5 bits (67), Expect = 0.78
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 16/62 (25%)
Query: 31 AIVLHTGPRIIYLLAY-QEYY---REVLKRRSLYL------------AQIAALLNIIEIV 74
A + P+ + L QE+ EV RR Y + A+LNI E++
Sbjct: 305 AFDPNGRPKKLNLKEILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNIDEVI 364
Query: 75 SL 76
+L
Sbjct: 365 NL 366
>gnl|CDD|185290 PRK15392, PRK15392, putative fumarate hydratase; Provisional.
Length = 550
Score = 29.2 bits (65), Expect = 1.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 33 VLHTGPRIIYLLAYQEYYREVLKRRSLYLAQIAALLN 69
V+ P + LLA Q +Y RS +L Q+A++LN
Sbjct: 38 VIKIAPEALTLLARQAFYEASFFLRSAHLQQVASILN 74
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 28.0 bits (63), Expect = 2.9
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 31 AIVLHTG-PRIIYLLAY-QEYY---REVLKRRSLYL------------AQIAALLNIIEI 73
+ L G P+++ L E+ EV+ RR+ Y + ALLNI E+
Sbjct: 333 MLALVNGRPKVLNLKEILSEFLEHRLEVVTRRTEYELNKAEERLHILEGLLIALLNIDEV 392
Query: 74 VSLL 77
+ ++
Sbjct: 393 IEII 396
>gnl|CDD|133462 cd06852, GT_MraY, Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of
undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-
pentapeptide from UDP-MurNAc-pentapeptide and
undecaprenyl-phosphate. It is an integral membrane
protein with possibly ten transmembrane domains.
Length = 280
Score = 27.5 bits (62), Expect = 3.0
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 138 LNIFCFSIAGYC--FLRHNAY 156
L +FC ++ G C FL NAY
Sbjct: 163 LAVFCAALVGACLGFLWFNAY 183
>gnl|CDD|234638 PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase;
Provisional.
Length = 344
Score = 27.4 bits (62), Expect = 3.6
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 138 LNIFCFSIAGYC--FLRHNAY 156
L IFC ++ G C FL NAY
Sbjct: 223 LAIFCAALVGACLGFLWFNAY 243
>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine
Kinase, Zeta-chain-associated protein of 70kDa. Protein
Tyrosine Kinase (PTK) family; Zeta-chain-associated
protein of 70kDa (Zap-70); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Zap-70 is
a member of the Syk subfamily of kinases, which are
cytoplasmic (or nonreceptor) tyr kinases containing two
Src homology 2 (SH2) domains N-terminal to the catalytic
tyr kinase domain. Zap-70 is primarily expressed in
T-cells and NK cells, and is a crucial component in
T-cell receptor (TCR) signaling. Zap-70 binds the
phosphorylated ITAM (immunoreceptor tyr activation
motif) sequences of the activated TCR zeta-chain through
its SH2 domains, leading to its phosphorylation and
activation. It then phosphorylates target proteins,
which propagate the signals to downstream pathways.
Zap-70 is hardly detected in normal peripheral B-cells,
but is present in some B-cell malignancies. It is used
as a diagnostic marker for chronic lymphocytic leukemia
(CLL) as it is associated with the more aggressive
subtype of the disease.
Length = 257
Score = 27.2 bits (60), Expect = 3.8
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 103 EVY-MIVTCWIYKKERQLPFNNLESR 127
E+Y ++ CWIYK E + F +E R
Sbjct: 226 EMYALMKDCWIYKWEDRPNFAKVEER 251
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.142 0.432
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,382,849
Number of extensions: 774933
Number of successful extensions: 886
Number of sequences better than 10.0: 1
Number of HSP's gapped: 883
Number of HSP's successfully gapped: 31
Length of query: 164
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 74
Effective length of database: 6,945,742
Effective search space: 513984908
Effective search space used: 513984908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (24.9 bits)