RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1571
         (164 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 33/183 (18%), Positives = 56/183 (30%), Gaps = 44/183 (24%)

Query: 2   KLEQLVPNYLPSVSAAIGNYTLQRIV-------------FTSAIVLHTGPRIIYLL---- 44
           KL Q     L      I NY   RI+             F +      G   +  +    
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV---GEGNAQLVAIFGGQ 163

Query: 45  -AYQEYYREVLKRRSLYLAQIAALLNIIEIVSLLALTLVPSAVNYPIHEKCFITFILTSE 103
               +Y+ E L  R LY      + ++I+  +     L+ + ++    EK F      ++
Sbjct: 164 GNTDDYFEE-L--RDLYQTYHVLVGDLIKFSAETLSELIRTTLDA---EKVF------TQ 211

Query: 104 VYMIVTCWIYKKERQLPFNNLES--RSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPGD 161
              I+  W+         + L S   S  L        I    +A Y          PG+
Sbjct: 212 GLNILE-WLENPSNTPDKDYLLSIPISCPL--------IGVIQLAHYVVTAKLLGFTPGE 262

Query: 162 INK 164
           +  
Sbjct: 263 LRS 265



 Score = 27.3 bits (60), Expect = 3.1
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 26/90 (28%)

Query: 20   NYTLQRIVFTS-AIVLH----TGPRIIYLLAYQEYYREVLKRR------------SL--Y 60
            N       F S   +L     T P +  L+    +  E LK +            SL  Y
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPAL-TLMEKAAF--EDLKSKGLIPADATFAGHSLGEY 1767

Query: 61   --LAQIAALLNIIEIVSLLAL--TLVPSAV 86
              LA +A +++I  +V ++      +  AV
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGMTMQVAV 1797


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.0 bits (69), Expect = 0.19
 Identities = 27/148 (18%), Positives = 44/148 (29%), Gaps = 40/148 (27%)

Query: 13  SVSAAIGNYTLQRIVFTSAIVLHTGPRIIYLLA------YQEYYREVLKRRSLYLAQIAA 66
            V+  +   T   I      +  T   +  LL        Q+  REVL      L+ IA 
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 67  LL-------------------NIIEIVSLLALTLVPSAVNYPIHEKCFITF-----ILTS 102
            +                    IIE  SL  L     A    + ++  + F     I  +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLE---PAEYRKMFDRLSV-FPPSAHI-PT 389

Query: 103 EVYMIVTCWIYKKER--QLPFNNLESRS 128
            +  ++  W    +    +  N L   S
Sbjct: 390 ILLSLI--WFDVIKSDVMVVVNKLHKYS 415


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 0.72
 Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 3/25 (12%)

Query: 2  KLEQLVPNYLP-SVSA-AIGNYTLQ 24
          KL+  +  Y   S  A AI   T++
Sbjct: 24 KLQASLKLYADDSAPALAI-KATME 47


>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
           decatenation, DNA bindi topology; 3.00A {Escherichia
           coli}
          Length = 716

 Score = 28.7 bits (65), Expect = 1.0
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 16/62 (25%)

Query: 31  AIVLHTGPRIIYLL----AYQEYYREVLKRRSLY-LAQIA-----------ALLNIIEIV 74
            I L   P +  LL     +  + R+ ++RR  Y L ++            A LNI E++
Sbjct: 305 MIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVI 364

Query: 75  SL 76
            +
Sbjct: 365 EI 366


>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
           baumannii} PDB: 2xkk_A*
          Length = 767

 Score = 27.7 bits (62), Expect = 2.0
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 16/62 (25%)

Query: 31  AIVLHTGPRIIYLL----AYQEYYREVLKRRSLY-LAQI-----------AALLNIIEIV 74
            I     P++  +      + E  ++ + RR  Y L +I            A L+I  ++
Sbjct: 599 MIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVI 658

Query: 75  SL 76
            +
Sbjct: 659 RI 660


>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase,
           cell WALL, peptidoglycan-anchor, secreted; 2.10A
           {Streptococcus agalactiae COH1} PDB: 3fax_A*
          Length = 877

 Score = 27.5 bits (61), Expect = 2.8
 Identities = 7/43 (16%), Positives = 14/43 (32%)

Query: 122 NNLESRSFNLKLKCFVLNIFCFSIAGYCFLRHNAYCEPGDINK 164
            N +  +     K         ++  Y +  H++Y     IN 
Sbjct: 630 LNPDYMTKVSDDKLPNKATLIEAVKEYPYFIHDSYDSSDAINH 672


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.142    0.432 

Gapped
Lambda     K      H
   0.267   0.0756    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,452,258
Number of extensions: 133704
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 11
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)