BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15711
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V411|NOG1_DROME Probable nucleolar GTP-binding protein 1 OS=Drosophila melanogaster
GN=CG8801 PE=2 SV=1
Length = 652
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 97/190 (51%), Gaps = 28/190 (14%)
Query: 85 AGYYAVPKIEYDQTMIEIKELAKQIRDKKSIMRQDALLIKQSTKPRLPRTALSKNRE-GV 143
+G Y VP + D+T+ EI+E+AKQIR K+ +R + L + KP +PR K R+ V
Sbjct: 465 SGVYKVPDMTMDETLKEIREIAKQIRGKRFELRDEKRLSSRKNKPVIPRNKQPKVRDRSV 524
Query: 144 EARASRSRGRSVEGPGGKRQR-------------------------LDSEGNAVTVSKSR 178
+ S G V+ G + LD E +AV +
Sbjct: 525 QKLVSTMEGLGVDMSGSENANFTKSVVDLRRGQVAVGSKKVPMQPLLDKESSAVV--RKT 582
Query: 179 ARSDSKVTPRDQSGLRDPQVLMKVKKIAHKAIAKKVGKWGLKGEGDRFIGTKKPKHLFSG 238
+ + RD G+++ + K + +A + IAKKV GLKGE DRFIGTK PKHLFSG
Sbjct: 583 GQPLKRAPSRDTLGIKNLAIRKKAQIMAKRDIAKKVTSRGLKGEADRFIGTKMPKHLFSG 642
Query: 239 KRGIGKTDRR 248
KRG GKTDRR
Sbjct: 643 KRGNGKTDRR 652
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 2 KVKKIAHKAIAKKVGKWGLKGEGDRFI 28
K + +A + IAKKV GLKGE DRFI
Sbjct: 605 KAQIMAKRDIAKKVTSRGLKGEADRFI 631
>sp|Q9BZE4|NOG1_HUMAN Nucleolar GTP-binding protein 1 OS=Homo sapiens GN=GTPBP4 PE=1 SV=3
Length = 634
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 97/188 (51%), Gaps = 34/188 (18%)
Query: 82 REEAGYYAVPKIEYDQTMIEIKELAKQIRDKKSIMRQDALLIKQSTKPRLPRTALSKNRE 141
R AG Y D+ M+EI++LAKQIR+KK + ++ K + PR+PRTA R
Sbjct: 460 RTAAGEYDSVSESEDEEMLEIRQLAKQIREKKKLKILESKE-KNTQGPRMPRTAKKVQRT 518
Query: 142 ---------------------GVEARASRSRGRSVEGPGGKRQRLDSEGNAVTVSKSRAR 180
V+AR SRS R KR+R DS A S +R+
Sbjct: 519 VLEKEMRSLGVDMDDKDDAHYAVQARRSRSITR-------KRKREDS---APPSSVARSG 568
Query: 181 SDSKVTPRDQSGLRDPQVLMKVKKIAHKAIAKKVGKWGLKGEGDRFIGTKKPKHLFSGKR 240
S S+ TPRD SGLRD +++ K K + A KK+ + G KGE DR + KPKHL SGKR
Sbjct: 569 SCSR-TPRDVSGLRDVKMVKKAKTMMKNA-QKKMNRLGKKGEADRHVFDMKPKHLLSGKR 626
Query: 241 GIGKTDRR 248
GK DRR
Sbjct: 627 KAGKKDRR 634
>sp|Q99ME9|NOG1_MOUSE Nucleolar GTP-binding protein 1 OS=Mus musculus GN=Gtpbp4 PE=2 SV=3
Length = 634
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 98/190 (51%), Gaps = 38/190 (20%)
Query: 82 REEAGYYAVPKIEYDQTMIEIKELAKQIRDKKSIMRQDALLIKQSTK--PRLPRTALSKN 139
R AG Y D+ M+EI++LAKQIR+KK + L K+ K PR+PRTA
Sbjct: 460 RTAAGEYDSDSESEDEEMMEIRQLAKQIREKKKL---KILQSKEKNKQGPRMPRTAKKVQ 516
Query: 140 RE---------------------GVEARASRSRGRSVEGPGGKRQRLDSEGNAVTVSKSR 178
R V+AR SRS R KR+R E + S +R
Sbjct: 517 RADLENEMRSLGVDMDDKNNAHYAVQARRSRSVTR-------KRKR---EESVPPSSTAR 566
Query: 179 ARSDSKVTPRDQSGLRDPQVLMKVKKIAHKAIAKKVGKWGLKGEGDRFIGTKKPKHLFSG 238
+RS S+ TPRD SGLRD +++ K K + KA KK+ + G KGE DR + KPKHL SG
Sbjct: 567 SRSCSR-TPRDVSGLRDVKMVKKAKTMMKKA-QKKMNRLGKKGEADRHVFDMKPKHLLSG 624
Query: 239 KRGIGKTDRR 248
KR GK DRR
Sbjct: 625 KRKAGKKDRR 634
>sp|Q9C6I8|NOG1_ARATH Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana
GN=At1g50920 PE=2 SV=1
Length = 671
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 112/217 (51%), Gaps = 41/217 (18%)
Query: 69 LHKLDELEKEEAQREEAGYYAVPKIEYDQTMIE-IKELAKQIRDKKSIMRQDALLIKQST 127
L +L ELE+EE RE A +++ ++ E +K+L+ +IR KK+I+ ++ L K
Sbjct: 459 LQRLAELEREEGIREAGVEEADMEMDIEKLSDEQLKQLS-EIRKKKAILIKNHRLKKTVA 517
Query: 128 KPR--LPR-----------------TALSKNREGVEARA-SRSRGR-------------- 153
+ R +PR +A+ + RA S+SRGR
Sbjct: 518 QNRSTVPRKFDKDKKYTTKRMGRELSAMGLDPSSAMDRARSKSRGRKRDRSEDAGNDAMD 577
Query: 154 -SVEGPGGKRQRLDSEGNAVTVSKSRARSDS-KVTPRDQSGLRDPQVLMKVKKIAHKAIA 211
E K+QR+ S+ A+++S+S++R + +V P + G +D + KI++K+
Sbjct: 578 VDDEQQSNKKQRVRSKSRAMSISRSQSRPPAHEVVPGE--GFKDSTQKLSAIKISNKS-H 634
Query: 212 KKVGKWGLKGEGDRFIGTKKPKHLFSGKRGIGKTDRR 248
KK K +GE DR I T +PKHLFSGKRG GKTDRR
Sbjct: 635 KKRDKNARRGEADRVIPTLRPKHLFSGKRGKGKTDRR 671
>sp|Q99P77|NOG1_RAT Nucleolar GTP-binding protein 1 OS=Rattus norvegicus GN=Gtpbp4 PE=2
SV=3
Length = 637
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 83/163 (50%), Gaps = 22/163 (13%)
Query: 102 IKELAKQIRDKKS--IMRQDALLIKQSTKPRLPRTALSKNREGVEARASRSRGRSVEGPG 159
I++LAKQIR+KK I++ K + PR+PRTA R +E RS G ++
Sbjct: 481 IRQLAKQIREKKKLKILQSKE---KNTQGPRMPRTAKKVQRADLENEM-RSLGVDMDDKD 536
Query: 160 GKRQRLDSEGNAVTVSKSRARSDS--------------KVTPRDQSGLRDPQVLMKVKKI 205
+ + + +V++ R R +S TPRD SGLRD ++ +K K
Sbjct: 537 NAHYAVRAR-RSRSVTRKRKREESVPPSSIARSRSRSCSKTPRDVSGLRDVKM-VKKAKT 594
Query: 206 AHKAIAKKVGKWGLKGEGDRFIGTKKPKHLFSGKRGIGKTDRR 248
K KK+ + G KGE DR + KPKHL SGKR GK +RR
Sbjct: 595 MMKKAQKKMNRLGKKGEADRHVFDMKPKHLLSGKRKAGKKERR 637
>sp|O44411|NOG1_CAEEL Probable nucleolar GTP-binding protein 1 OS=Caenorhabditis elegans
GN=T07A9.9 PE=2 SV=1
Length = 681
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 105 LAKQIRDKKSIMRQDALLIKQSTKPRLPRTALSKNREGVEARASRSRG-----------R 153
LA QIR+K+ ++ D + K+ R S+ R+ +R G +
Sbjct: 532 LALQIREKEKLLTLDHAVNKRIAGRIGSRIHGSRKRDRSMSRLENELGELGVDVDTKKMK 591
Query: 154 SVEGPGGKRQRLDSEGNAVTVSKSRARSDSKVTPRDQSGLRDPQVLMKVKKIAHKAIAKK 213
+++G K Q G + V +SR+ S + PRD+ D + V K+ KA+ +
Sbjct: 592 NLQGQCAKPQL----GKKMKVGRSRSLSAVRPAPRDELAFPDEEKRAHVDKLRTKAM-RG 646
Query: 214 VGKWGLKGEGDRFIGTKKPKHLFSGKRGIGKTDRR 248
+ + KGE DR + KPKHLF GKRG GKTD R
Sbjct: 647 LRREAKKGEADRHVYDLKPKHLFCGKRGNGKTDWR 681
>sp|Q74ZK6|NOG1_ASHGO Nucleolar GTP-binding protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NOG1
PE=3 SV=1
Length = 642
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 14/164 (8%)
Query: 96 DQTMIEIKELAKQIRDKKSIMRQDALLIKQSTKPR--LPRTALSKNREGVEARASRSRGR 153
D+ + +I+E A IRDK+ M +A +++ K R +PR+ ++K+ E +E S S G
Sbjct: 482 DEDVEDIREKAAWIRDKQKKM-INAARSRKALKNRGTMPRSKMAKSFEDMEKHMS-SLGH 539
Query: 154 SVEG-------PGGKRQRLDSEGNAVTVSKSRARSDSKV--TPRDQSGLRDPQVLMKVKK 204
++ K + +S + V + A++ K+ + R G+ D + K +
Sbjct: 540 NMSALQSKQSAAAAKNRYTESGADIVYGNNESAKTAGKLRQSDRLMDGVADASMRSKADR 599
Query: 205 IAHKAIAKKVGKWGLKGEGDRFIGTKKPKHLFSGKRGIGKTDRR 248
+A K ++ + +GE DR PKHLFSGKRGIG DRR
Sbjct: 600 MA-KLHRRERNRQARQGEADRHATASLPKHLFSGKRGIGSNDRR 642
>sp|O94659|NOG1_SCHPO Probable nucleolar GTP-binding protein 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=nog1 PE=1 SV=2
Length = 642
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 75/183 (40%), Gaps = 27/183 (14%)
Query: 86 GYYAVPKIEYDQTMIEIKELAKQIRDKKSIMRQDALLIKQSTKPRLPRTA---------L 136
GYY + D E+ E A +IR+K + A K +P LPRTA
Sbjct: 467 GYYDSDQEIEDADEEEVLEKASRIREKNKLTMLAARQKKIKNRPVLPRTAGIRTLDELQS 526
Query: 137 SKNREGVEARASRSRGRSVEGPGGKRQRLDSEGNAVTVSKSRARSDSKVTPRDQSGLRDP 196
S G+ + + R RS + D G + +++ + PR QS R+
Sbjct: 527 SLQSAGLPSDSIEERARSRARTAAANEMADGSGVDLLMNEGEEIRSKSIAPRSQSNRRES 586
Query: 197 QV-----------LMKVKKIAHKAIAKKVGKWGLKGEGDRFIGTKKPKHLFSGKRGIGKT 245
V L +VK+I +A+ E DR + KPKHL SGKRG GKT
Sbjct: 587 GVHAEGARSYADRLARVKQIHRNRMARA-------SESDRHVIAAKPKHLLSGKRGNGKT 639
Query: 246 DRR 248
RR
Sbjct: 640 QRR 642
>sp|Q6CM00|NOG1_KLULA Nucleolar GTP-binding protein 1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NOG1 PE=3 SV=1
Length = 643
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 16/160 (10%)
Query: 101 EIKELAKQIRDKKSIMRQDALLIKQSTKPR--LPRTALSKNREGVEARASRSRGRSVEGP 158
EI+E A+ IRD++ M +A +++ K R +PR+ L+K +E S S G +
Sbjct: 488 EIREKAEWIRDRQKKM-INASRNRKALKNRGTMPRSKLAKTYGDMEKHMS-SLGHDMTAL 545
Query: 159 GGKRQRLDSEGNAVTVSKSRA----RSDS------KVTPRDQSGLRDPQVLMKVKKIAHK 208
K QR+ +E N + + + DS + T R G+ D + K +++A K
Sbjct: 546 QDK-QRVAAEKNRYEQTGADVVYGDQEDSAPAGKLRQTDRLTDGVADGSMRSKAERMA-K 603
Query: 209 AIAKKVGKWGLKGEGDRFIGTKKPKHLFSGKRGIGKTDRR 248
++ + GE DR PKHLFSGKRG+GKTD R
Sbjct: 604 LERRERNRMARAGESDRHATASLPKHLFSGKRGVGKTDFR 643
>sp|Q54N72|NOG1_DICDI Probable nucleolar GTP-binding protein 1 OS=Dictyostelium
discoideum GN=nog1 PE=1 SV=1
Length = 674
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 169 GNAVTVSKSRARSDSKV-TPRDQSGLRDPQVLMKVKKIAHKAIAKKVGKWGLKGEGDRFI 227
G ++ SKSR RS +++ +P G D K K+ ++ KK + G KGE DR +
Sbjct: 595 GLSLNRSKSRQRSTTRIASPAPGEGFHDLAQKEKADKLDKRS-RKKRNQDGRKGESDRHV 653
Query: 228 GTKKPKHLFSGKRGIGKTDRR 248
PKHLFSGKR G D R
Sbjct: 654 YNLMPKHLFSGKRSGGTNDFR 674
>sp|Q6FRV0|NOG1_CANGA Nucleolar GTP-binding protein 1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=NOG1 PE=3 SV=1
Length = 645
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 220 KGEGDRFIGTKKPKHLFSGKRGIGKTDRR 248
+GE DR PKHLFSGKRGIGK+D R
Sbjct: 617 QGEADRHATASLPKHLFSGKRGIGKSDFR 645
>sp|Q9U6A9|NOG1_TRYBB Nucleolar GTP-binding protein 1 OS=Trypanosoma brucei brucei
GN=NOG1 PE=1 SV=1
Length = 655
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 141 EGVEARASRSRGRSVEGPGGKRQRLDSEGNAVT---VSKSRARSDSKVTPRDQSGLRDPQ 197
E + A R R S R R S + T +S A D ++ G RD
Sbjct: 545 ETTNSSAKRGRSLSAAQEAVMRDRSSSHMSTKTTRGISSHSATRDRSLSVNRGEGYRDVN 604
Query: 198 VLMKVKKIAHKAIAKKVGKWGLKGEGDRFIGTKKPKHLFSGK-RGIGKTDRR 248
++ K++ K +A+ KGEGDR I +PKHLF+GK + G+ DRR
Sbjct: 605 EKLRAVKLS-KVVARPRNLQAKKGEGDRAIPNLRPKHLFTGKVKSNGRRDRR 655
>sp|Q02892|NOG1_YEAST Nucleolar GTP-binding protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NOG1 PE=1 SV=1
Length = 647
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 101 EIKELAKQIRDKKSIMRQDALLIKQ-STKPRLPRTALSKNREGVEARASR-----SRGRS 154
+IKE A IR+++ M +A K K +PR+ L+K+ +E S S +
Sbjct: 488 DIKEKAAWIRNRQKTMIAEARNRKSLKNKAIMPRSKLTKSFGKMEEHMSTLGHDMSALQD 547
Query: 155 VEGPGGKRQRLDSEGNAVTVSKSRARSDS-------KVTPRDQSGLRDPQVLMKVKKIAH 207
+ ++ R G+ V A + S + T R G+ D + K ++A
Sbjct: 548 KQNRAARKNRYVERGSDVVFGDQDALTASTENGVKLRQTDRLLDGVADGSMRSKADRMA- 606
Query: 208 KAIAKKVGKWGLKGEGDRFIGTKKPKHLFSGKRGIGKTDRR 248
K ++ + +GE DR KHLFSGKRG+GKTD R
Sbjct: 607 KMERRERNRHAKQGESDRHNAVSLSKHLFSGKRGVGKTDFR 647
>sp|E7EW31|PROB1_HUMAN Proline-rich basic protein 1 OS=Homo sapiens GN=PROB1 PE=2 SV=2
Length = 1015
Score = 32.7 bits (73), Expect = 2.5, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 125 QSTKPRLPRTALSKNREGVEARASRSRGRSVEGPGGKRQRLDSEGNAVTVSKSRARSDSK 184
+ T+ RLP R V +R R+RG E + QRL +G+ T ARS S+
Sbjct: 729 KRTEIRLPGALALGRRPEVTSRV-RARGPGGENRDVEAQRLVPDGDGRTSPLGGARSSSQ 787
Query: 185 VTPRDQSGLRDPQ 197
+P +G+R P+
Sbjct: 788 RSPVGPAGVRSPR 800
>sp|Q58191|Y781_METJA Uncharacterized protein MJ0781 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0781 PE=1 SV=1
Length = 721
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 18/80 (22%)
Query: 24 GDRFIEDRY--KLDELEKEEAQREEAG--YYAVPKIEYDQTKLGIFYFSLHKL--DELEK 77
D I D Y K+DE+E E + E G YY VP+I D+ + SL KL D L
Sbjct: 69 NDETILDTYSIKIDEIEMEVVIKREEGYIYYLVPEI--DKINM-----SLSKLTKDHLNH 121
Query: 78 EEAQREEAGYYAVPKIEYDQ 97
++Q + G IEYDQ
Sbjct: 122 IKSQISDLGL-----IEYDQ 136
>sp|Q9DGN1|STAG1_XENLA Cohesin subunit SA-1 OS=Xenopus laevis GN=stag1 PE=1 SV=1
Length = 1265
Score = 31.6 bits (70), Expect = 6.1, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 141 EGVEARASRSRGRSVEGPGGKRQRLDSEGNAVTVSK-SRARSDSKVTPRDQSGLRDPQVL 199
E +E + R RGR P ++ + G+ SR R + P+ Q+G DP L
Sbjct: 36 EDLEVKGKRKRGRPGRPPSAIKKPRKTPGDRSRAEPGSRGRGRANGHPQ-QNGEGDPVTL 94
Query: 200 MKVKKIAHKAIAKKVGKWGLKGEGDRFIG 228
+V K+ A+ V W + DR I
Sbjct: 95 FEVVKMGKSAMQAVVDDWIESYKQDRDIA 123
>sp|C8YR32|LOXH1_MOUSE Lipoxygenase homology domain-containing protein 1 OS=Mus musculus
GN=Loxhd1 PE=2 SV=1
Length = 2068
Score = 31.2 bits (69), Expect = 6.4, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 21 KGEGDRFIEDRYKLDELEKEEAQREEAGYYA---VPKIEYDQTKLGI 64
+G DRF + +L EL K + + +GYY+ V K+E T G+
Sbjct: 1995 RGSTDRFFLETLELGELRKVRLEHDSSGYYSGWLVEKVEVTNTSTGV 2041
>sp|Q9Y8T7|TRPC_AERPE Indole-3-glycerol phosphate synthase OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=trpC PE=3 SV=1
Length = 261
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 108 QIRDKKSIMRQDALLIKQSTKPR-LPRTALSKNREGVEAR-----ASRSRGRSVEGPGG- 160
QIR + ALLI ++ PR L A + +R GVE AS + S PG
Sbjct: 120 QIRIAACMGASAALLIMEALTPRELQELAAAASRYGVEVLVETPDASHAVEASRLAPGSI 179
Query: 161 --------KRQRLDSEGNAVTVSKSRARSDSKVTPRDQSGLRDPQVLMKVKKIAHKAI 210
K R+D E VSK+R + +V +SG+ P +K K +AI
Sbjct: 180 IGVNSRDLKTLRVDYEAMLREVSKAREQLPGEVILVAESGIDSPDKALKAFKAGAQAI 237
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,755,853
Number of Sequences: 539616
Number of extensions: 3907666
Number of successful extensions: 10701
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 10575
Number of HSP's gapped (non-prelim): 227
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)