Query psy15711
Match_columns 248
No_of_seqs 113 out of 233
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 19:31:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1490|consensus 100.0 3.9E-54 8.4E-59 416.4 10.6 208 28-248 399-620 (620)
2 PF08155 NOGCT: NOGCT (NUC087) 99.7 6.3E-18 1.4E-22 121.0 0.7 40 28-68 14-55 (55)
3 PF02252 PA28_beta: Proteasome 76.7 1.3 2.9E-05 37.8 1.3 31 51-82 39-71 (150)
4 KOG4470|consensus 47.1 21 0.00046 32.9 3.3 32 50-82 134-167 (246)
5 KOG0739|consensus 30.3 20 0.00044 35.0 0.5 13 227-240 151-163 (439)
6 PF11460 DUF3007: Protein of u 23.4 53 0.0012 26.8 1.7 20 65-84 80-100 (104)
7 KOG4339|consensus 23.4 28 0.0006 35.5 0.1 116 7-135 276-401 (533)
8 KOG2751|consensus 22.4 60 0.0013 32.5 2.2 44 41-85 154-198 (447)
9 PRK09112 DNA polymerase III su 18.4 40 0.00086 32.2 -0.0 16 231-246 44-60 (351)
10 PRK05244 Der GTPase activator; 17.3 1.3E+02 0.0029 26.6 3.0 48 42-93 103-152 (177)
No 1
>KOG1490|consensus
Probab=100.00 E-value=3.9e-54 Score=416.41 Aligned_cols=208 Identities=30% Similarity=0.383 Sum_probs=171.5
Q ss_pred cccccccchhhhhhhccccccccccchhhccCccee--echhHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHH
Q psy15711 28 IEDRYKLDELEKEEAQREEAGYYAVPKIEYDQTKLG--IFYFSLHKLDELEKEEAQREEAGYYAVPKIEYDQTMIEIKEL 105 (248)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~e~kyd~ipei~~dg~ni~--~d~DI~eKLeeLErEEE~LEaeGfYdsdee~~DeE~eeIr~~ 105 (248)
+++.|+++++++|+|+++|||||+||||| |||||| |||||+.||++||+|||.|+++|+|+++++++|++.+++++.
T Consensus 399 ~g~~y~~~lk~~Y~l~~~e~k~di~pEi~-dg~Nvadf~Dp~i~~kl~~l~~Eee~~~~~~~~~~~~~~~~e~~~e~~e~ 477 (620)
T KOG1490|consen 399 NGGAYNVELRDKYILQDPSWKYDIMPEIL-DGKNVADFVDPEIEAKLLALDEEEERLEREGYYDSDQEIEDEDEEEVLEK 477 (620)
T ss_pred hCcchhHHhhhccccCChhhhhcccHHHh-cCcchhhhcCHHHHHHHHHHHHhhhhccccccccccccccccchHHHHHH
Confidence 44559999999999999999999999999 699999 999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCcC---------CCchhhhhhccccCCCCCCCcccc-cccCcc--cc
Q psy15711 106 AKQIRDKKSIMRQDALLIKQSTKPRLPRTALSKNRE---------GVEARASRSRGRSVEGPGGKRQRL-DSEGNA--VT 173 (248)
Q Consensus 106 a~~IR~Kk~~l~~~~~r~Kk~nrp~lPR~~~~~s~~---------GvD~~~~r~R~rs~~~~~rkr~r~-~~~~~~--~~ 173 (248)
|.+||+|+ +++.++.+.|+.|+|++||+.. ++.. |+|+.....+.. . ++.+. .+.+.. ..
T Consensus 478 a~~iR~k~-~l~~~~~~~k~~n~~~~pr~~~-k~~~~~~~~l~~~G~d~~~~~~~~~-~-----~~~~~~~~~~~~~~~~ 549 (620)
T KOG1490|consen 478 ASRIREKN-KLTMLAARQKKKNRPVLPRTAG-RTLDELQSSLQSLGLDSDSIEERAR-R-----AANEMADGSGVDLEEI 549 (620)
T ss_pred HHHHHHHH-HHHHHHHhhccccCccCCchhc-cchHHHHHHHHhcCCCchHHHHHHH-H-----HHhhhhhcccchhhhc
Confidence 99999999 8888888887899999999976 2211 999844433322 0 11111 100000 01
Q ss_pred hhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhhhhccccccCCCCCCCCCCCCcccccccCCCCCCCCC
Q psy15711 174 VSKSRARSDSKVTPRDQSGLRDPQVLMKVKKIAHKAIAKKVGKWGLKGEGDRFIGTKKPKHLFSGKRGIGKTDRR 248 (248)
Q Consensus 174 rs~sr~rs~s~~~~R~~~Gl~D~~~r~KA~klak~~~qRk~Nr~Ar~GEaDRhI~~kmPKHLFSGKRg~GKTdRR 248 (248)
+++| +.+. +.||+.+||+|++++.+|.+|++++ |+++|++||+|||||||++.+||||||||||+||||||
T Consensus 550 ~~~s-~~~~--s~~r~~~g~~d~~~~~~a~~~~~~~-~~~~~r~ar~geaDrh~~~~kpKHL~sGkrg~gkt~rr 620 (620)
T KOG1490|consen 550 RSKS-IAPR--SQSRRESGVHDEGARSYADRLARVK-QIHRNRMARAGESDRHVIAAKPKHLLSGKRGNGKTQRR 620 (620)
T ss_pred cccc-ccCc--cCCCccccccchhhhhhhHhHhHHH-HHHhhhhhhcccccccccccCchhhhccCCCCCCccCC
Confidence 1111 1111 2469999999999999999999999 99999999999999999999999999999999999998
No 2
>PF08155 NOGCT: NOGCT (NUC087) domain; InterPro: IPR012973 This C-terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [].
Probab=99.68 E-value=6.3e-18 Score=120.99 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=37.6
Q ss_pred cccccccchhhhhhhccccccccccchhhccCccee--echhH
Q psy15711 28 IEDRYKLDELEKEEAQREEAGYYAVPKIEYDQTKLG--IFYFS 68 (248)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~e~kyd~ipei~~dg~ni~--~d~DI 68 (248)
..++|++|++++|.|+|+|||||+||||| |||||+ |||||
T Consensus 14 g~gvy~~dlkk~y~L~~~ewk~D~IPEI~-~GkNIaDfiDpdI 55 (55)
T PF08155_consen 14 GAGVYSVDLKKHYDLKNDEWKYDIIPEIW-DGKNIADFIDPDI 55 (55)
T ss_pred CCCccccchhhccccCChhHhcccchhhh-cCcchhhccCCCC
Confidence 35789999999999999999999999999 599999 99998
No 3
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=76.69 E-value=1.3 Score=37.77 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=19.4
Q ss_pred ccchhhccCccee--echhHHHHHHHHHHHHHHH
Q psy15711 51 AVPKIEYDQTKLG--IFYFSLHKLDELEKEEAQR 82 (248)
Q Consensus 51 ~ipei~~dg~ni~--~d~DI~eKLeeLErEEE~L 82 (248)
-||.|. ||.|++ |..++++.|.+++.+=..+
T Consensus 39 ~IPkiE-DGNNFGV~VQeevl~~l~~v~~~a~~~ 71 (150)
T PF02252_consen 39 LIPKIE-DGNNFGVSVQEEVLEELRAVESKAENF 71 (150)
T ss_dssp T------SS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcccc-cCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 589996 899999 8889999999988775433
No 4
>KOG4470|consensus
Probab=47.12 E-value=21 Score=32.88 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=27.5
Q ss_pred cccchhhccCccee--echhHHHHHHHHHHHHHHH
Q psy15711 50 YAVPKIEYDQTKLG--IFYFSLHKLDELEKEEAQR 82 (248)
Q Consensus 50 d~ipei~~dg~ni~--~d~DI~eKLeeLErEEE~L 82 (248)
=-||-|. ||-|++ |..+.++.+.+++-|-|..
T Consensus 134 ~lIPkIE-DGNnFGVaIQEkvle~v~aV~tk~eaF 167 (246)
T KOG4470|consen 134 LLIPKIE-DGNNFGVAIQEKVLERVNAVKTKVEAF 167 (246)
T ss_pred Hhccccc-cCCccceeehHHHHHHHHHHHHHHHHH
Confidence 4589997 999999 9999999999999886543
No 5
>KOG0739|consensus
Probab=30.30 E-value=20 Score=34.97 Aligned_cols=13 Identities=54% Similarity=0.930 Sum_probs=10.0
Q ss_pred CCCCCCcccccccC
Q psy15711 227 IGTKKPKHLFSGKR 240 (248)
Q Consensus 227 I~~kmPKHLFSGKR 240 (248)
.|++.| |||+|||
T Consensus 151 LPIKFP-qlFtGkR 163 (439)
T KOG0739|consen 151 LPIKFP-QLFTGKR 163 (439)
T ss_pred ecccch-hhhcCCC
Confidence 355555 9999999
No 6
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=23.40 E-value=53 Score=26.79 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=14.6
Q ss_pred chhHHHHHHHHHHHH-HHHHH
Q psy15711 65 FYFSLHKLDELEKEE-AQREE 84 (248)
Q Consensus 65 d~DI~eKLeeLErEE-E~LEa 84 (248)
+.++.+||++|-.|| ++|++
T Consensus 80 ~~~lqkRle~l~~eE~~~L~~ 100 (104)
T PF11460_consen 80 NEELQKRLEELSPEELEALQA 100 (104)
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 457888888888887 55554
No 7
>KOG4339|consensus
Probab=23.38 E-value=28 Score=35.54 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=64.5
Q ss_pred HHHHHHHHhhccccccCCccccccccccchhhhhhhcc-ccccccccchhhccCcceeechhHHHHHHHHHHHHHHHHHh
Q psy15711 7 AHKAIAKKVGKWGLKGEGDRFIEDRYKLDELEKEEAQR-EEAGYYAVPKIEYDQTKLGIFYFSLHKLDELEKEEAQREEA 85 (248)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~kyd~ipei~~dg~ni~~d~DI~eKLeeLErEEE~LEae 85 (248)
+|..|+.----|+-++.-+.|- |.+-+...+-+.+ .+.-|-.|+|+|- = --...++.+-+..|+.-.-.
T Consensus 276 psr~~~e~~~~~a~~~~~~~~~---~slp~~~~vk~~d~~~~~~~~~~~~~~-P------~sv~~~~~~~~~~~e~~~sd 345 (533)
T KOG4339|consen 276 PSRLIDELKTGLAEKEDTLSFQ---RSLPSKEDVKLSDDSSEDGKTIQERDL-P------ISVAAAAAEREANEEEPGSD 345 (533)
T ss_pred chhHHHhhhhccccccchhhHH---hhcCcccceeccccccccccccccccC-c------cccchhccccccccccCCCc
Confidence 3455666666788888888887 4454444444443 3344478888883 2 12233444444444322111
Q ss_pred c------ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc--cCCCCCCCcc
Q psy15711 86 G------YYAVPKIEYDQTMIEIKELAKQIRDKKSIMRQDALL-IKQ--STKPRLPRTA 135 (248)
Q Consensus 86 G------fYdsdee~~DeE~eeIr~~a~~IR~Kk~~l~~~~~r-~Kk--~nrp~lPR~~ 135 (248)
- +|+++++ +|| ..+-.+|..|..|-.+-|...++ -|+ .++.++||+.
T Consensus 346 SD~dd~ilY~deEd-edE--d~ds~la~Kv~RKDtLAlKL~nRPsKqELe~rNIlpr~t 401 (533)
T KOG4339|consen 346 SDSDDPILYDDEED-EDE--DRDSGLASKVARKDTLALKLDNRPSKQELEDRNILPRTT 401 (533)
T ss_pred ccccccccccchhc-ccc--cchhhHHHHHhhhhhhhhhhcCCCchhhhhhcccccccC
Confidence 1 2222211 111 12256888998888777766666 354 6889999974
No 8
>KOG2751|consensus
Probab=22.42 E-value=60 Score=32.53 Aligned_cols=44 Identities=23% Similarity=0.169 Sum_probs=33.9
Q ss_pred hhccccccccccchhhccCcceeech-hHHHHHHHHHHHHHHHHHh
Q psy15711 41 EAQREEAGYYAVPKIEYDQTKLGIFY-FSLHKLDELEKEEAQREEA 85 (248)
Q Consensus 41 ~~~~~e~kyd~ipei~~dg~ni~~d~-DI~eKLeeLErEEE~LEae 85 (248)
.+.++-.+|-.+=+|.+ +.|..++. |-...|+.|..||+.|.++
T Consensus 154 ~~~~e~~~Y~~~l~~Le-~~~~~~~~~~~~~e~~~l~~eE~~L~q~ 198 (447)
T KOG2751|consen 154 DAEDEVDTYKACLQRLE-QQNQDVSEEDLLKELKNLKEEEERLLQQ 198 (447)
T ss_pred HHHHHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 35577789999999995 99977543 6677788888888888654
No 9
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=18.43 E-value=40 Score=32.20 Aligned_cols=16 Identities=44% Similarity=0.711 Sum_probs=13.5
Q ss_pred CCc-ccccccCCCCCCC
Q psy15711 231 KPK-HLFSGKRGIGKTD 246 (248)
Q Consensus 231 mPK-HLFSGKRg~GKTd 246 (248)
+|- +||+|..|.|||.
T Consensus 44 l~ha~L~~G~~G~GKtt 60 (351)
T PRK09112 44 LHHALLFEGPEGIGKAT 60 (351)
T ss_pred CCeeEeeECCCCCCHHH
Confidence 554 8999999999973
No 10
>PRK05244 Der GTPase activator; Provisional
Probab=17.29 E-value=1.3e+02 Score=26.63 Aligned_cols=48 Identities=10% Similarity=-0.001 Sum_probs=28.6
Q ss_pred hccccccccccchhhccCccee-ec-hhHHHHHHHHHHHHHHHHHhcccCCCCC
Q psy15711 42 AQREEAGYYAVPKIEYDQTKLG-IF-YFSLHKLDELEKEEAQREEAGYYAVPKI 93 (248)
Q Consensus 42 ~~~~e~kyd~ipei~~dg~ni~-~d-~DI~eKLeeLErEEE~LEaeGfYdsdee 93 (248)
|.|| ...+.+=+-+++|.++. -| --+. +-|.+=++++++-|+.+++++
T Consensus 103 LEnD-~rL~~LLdrLE~Ge~Ls~~dQ~yvD---~~LdRie~LM~~LGI~~edd~ 152 (177)
T PRK05244 103 LEND-ERLNALLDRLEAGETLSAEDQKWVD---EKLDRIDELMEKLGISDDDDE 152 (177)
T ss_pred Hhcc-HHHHHHHHHHHCCCcCCHHHHHHHH---HHHHHHHHHHHHhCCCccccc
Confidence 4444 45555555556799998 11 1222 445555777777898776643
Done!