Query psy15711
Match_columns 248
No_of_seqs 113 out of 233
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 19:32:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1avo_B 11S regulator; proteaso 78.3 0.77 2.6E-05 37.6 1.5 29 51-80 36-66 (140)
2 2lxm_B Charged multivesicular 30.4 35 0.0012 24.0 2.7 16 64-79 20-36 (57)
3 2xu6_A MDV1 coiled coil; prote 26.5 48 0.0016 24.3 2.9 18 68-85 40-57 (72)
4 3tkl_B LIDA protein, substrate 20.8 40 0.0014 29.9 1.8 36 60-95 32-76 (267)
5 2cpg_A REPA protein, transcrip 18.9 60 0.002 20.0 1.9 18 61-78 6-23 (45)
6 3uly_B Charged multivesicular 17.2 74 0.0025 23.1 2.3 12 67-78 12-23 (69)
7 2lqo_A Putative glutaredoxin R 17.2 74 0.0025 23.2 2.4 28 48-75 52-82 (92)
8 1jbk_A CLPB protein; beta barr 15.3 31 0.0011 25.8 -0.2 12 234-245 46-57 (195)
9 2wmm_A Chromosome partition pr 14.1 1.1E+02 0.0036 25.7 2.7 56 21-83 96-156 (162)
10 3ljm_A Coil Ser L9C; de novo d 14.0 1.5E+02 0.0053 18.0 2.7 16 68-83 13-28 (31)
No 1
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=78.33 E-value=0.77 Score=37.64 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=25.3
Q ss_pred ccchhhccCccee--echhHHHHHHHHHHHHH
Q psy15711 51 AVPKIEYDQTKLG--IFYFSLHKLDELEKEEA 80 (248)
Q Consensus 51 ~ipei~~dg~ni~--~d~DI~eKLeeLErEEE 80 (248)
-||.|. ||-|++ |..++++.|.++|.+=+
T Consensus 36 ~IPkiE-DGNNFGV~VQeevl~~l~~v~~~~~ 66 (140)
T 1avo_B 36 QIPRIE-DGNNFGVAVQEKVFELMTSLHTKLE 66 (140)
T ss_dssp TCCCCC-SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCccc-CCCchhHHHHHHHHHHHHHHHHHHH
Confidence 599997 899999 88899999999987744
No 2
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=30.45 E-value=35 Score=23.98 Aligned_cols=16 Identities=25% Similarity=-0.002 Sum_probs=11.7
Q ss_pred ech-hHHHHHHHHHHHH
Q psy15711 64 IFY-FSLHKLDELEKEE 79 (248)
Q Consensus 64 ~d~-DI~eKLeeLErEE 79 (248)
||. |.++-|++|+.|+
T Consensus 20 iDEdEL~aELe~LeqE~ 36 (57)
T 2lxm_B 20 LDEDDLEAELDALGDEL 36 (57)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 665 7778888887665
No 3
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=26.47 E-value=48 Score=24.33 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy15711 68 SLHKLDELEKEEAQREEA 85 (248)
Q Consensus 68 I~eKLeeLErEEE~LEae 85 (248)
++.||+.||.+|-.||..
T Consensus 40 vldRlA~lEqdE~~LE~~ 57 (72)
T 2xu6_A 40 LLGKIANIEQNQLMLEDN 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 378999999999988854
No 4
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=20.84 E-value=40 Score=29.88 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=0.8
Q ss_pred cceeechhHHHHHHHHHHHHHHHHH---------hcccCCCCCCC
Q psy15711 60 TKLGIFYFSLHKLDELEKEEAQREE---------AGYYAVPKIEY 95 (248)
Q Consensus 60 ~ni~~d~DI~eKLeeLErEEE~LEa---------eGfYdsdee~~ 95 (248)
-||+-.....+||+.||++-..++. +|||.+..+++
T Consensus 32 en~~k~e~L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~ye 76 (267)
T 3tkl_B 32 ENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSE 76 (267)
T ss_dssp -------------------------------------------CC
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 3777556777899999998655532 37887654443
No 5
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=18.94 E-value=60 Score=19.98 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=14.6
Q ss_pred ceeechhHHHHHHHHHHH
Q psy15711 61 KLGIFYFSLHKLDELEKE 78 (248)
Q Consensus 61 ni~~d~DI~eKLeeLErE 78 (248)
+|.++++++++|++|=++
T Consensus 6 tv~l~~~l~~~Ld~~a~~ 23 (45)
T 2cpg_A 6 TITLSESVLENLEKMARE 23 (45)
T ss_dssp EEEEEHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHH
Confidence 566999999999988555
No 6
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=17.19 E-value=74 Score=23.12 Aligned_cols=12 Identities=33% Similarity=0.196 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHH
Q psy15711 67 FSLHKLDELEKE 78 (248)
Q Consensus 67 DI~eKLeeLErE 78 (248)
|.++-|++|+.|
T Consensus 12 eL~aELdaL~~e 23 (69)
T 3uly_B 12 DLEAELDALGDE 23 (69)
T ss_pred HHHHHHHHHHHH
Confidence 555666666543
No 7
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=17.18 E-value=74 Score=23.18 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=19.0
Q ss_pred cccccchhh-ccCccee-ech-hHHHHHHHH
Q psy15711 48 GYYAVPKIE-YDQTKLG-IFY-FSLHKLDEL 75 (248)
Q Consensus 48 kyd~ipei~-~dg~ni~-~d~-DI~eKLeeL 75 (248)
.+-.||=|+ .||+-+. +++ +|.++|++|
T Consensus 52 G~~tVP~I~i~Dg~~l~~~~~~el~~~L~el 82 (92)
T 2lqo_A 52 GNRTVPTVKFADGSTLTNPSADEVKAKLVKI 82 (92)
T ss_dssp SSSCSCEEEETTSCEEESCCHHHHHHHHHHH
T ss_pred CCCEeCEEEEeCCEEEeCCCHHHHHHHHHHh
Confidence 567899875 3677655 554 677777765
No 8
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=15.32 E-value=31 Score=25.84 Aligned_cols=12 Identities=42% Similarity=0.828 Sum_probs=11.1
Q ss_pred ccccccCCCCCC
Q psy15711 234 HLFSGKRGIGKT 245 (248)
Q Consensus 234 HLFSGKRg~GKT 245 (248)
-||.|-.|.|||
T Consensus 46 ~ll~G~~G~GKT 57 (195)
T 1jbk_A 46 PVLIGEPGVGKT 57 (195)
T ss_dssp EEEECCTTSCHH
T ss_pred eEEECCCCCCHH
Confidence 589999999998
No 9
>2wmm_A Chromosome partition protein MUKB; cell division, DNA condensation, nucleotide-binding, cell cycle, coiled coil, ATP-binding, DNA-binding, SMC; 2.30A {Escherichia coli}
Probab=14.14 E-value=1.1e+02 Score=25.70 Aligned_cols=56 Identities=21% Similarity=0.390 Sum_probs=42.9
Q ss_pred ccCCccccccccccchhhhhhh---ccccccccccchhhccCcceeech--hHHHHHHHHHHHHHHHH
Q psy15711 21 KGEGDRFIEDRYKLDELEKEEA---QREEAGYYAVPKIEYDQTKLGIFY--FSLHKLDELEKEEAQRE 83 (248)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~---~~~e~kyd~ipei~~dg~ni~~d~--DI~eKLeeLErEEE~LE 83 (248)
.|..++|=+++|..++..+-++ .+-.|.|--+||+= ++- -=+++|+.|..|-+.+-
T Consensus 96 egdp~~FDdsvf~a~el~~av~V~~~~rq~RySr~P~~P-------lfGraARE~rle~L~~erd~~~ 156 (162)
T 2wmm_A 96 EGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVP-------LFGRAARESRIESLHAEREVLS 156 (162)
T ss_dssp ESCTTSCCCCCCCEEEETTEEEEEEETTEEEEEECCSSC-------SSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccchhhhhhHhhcCceEEEecCceeeeccCCCcc-------cccHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999988777664 37789999999985 443 34678888888866553
No 10
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=14.04 E-value=1.5e+02 Score=17.95 Aligned_cols=16 Identities=38% Similarity=0.281 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15711 68 SLHKLDELEKEEAQRE 83 (248)
Q Consensus 68 I~eKLeeLErEEE~LE 83 (248)
.+.||++||+.=|.||
T Consensus 13 lesklqalekkleale 28 (31)
T 3ljm_A 13 LESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567788877666555
Done!