Query psy15711
Match_columns 248
No_of_seqs 113 out of 233
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 19:32:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15711.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15711hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 g1avo.1 a.24.8.1 (A:,B:) Prote 61.9 1.4 9.9E-05 36.2 1.5 33 47-80 92-126 (200)
2 d1r7ha_ c.47.1.1 (A:) Glutared 41.5 4.2 0.00031 26.5 1.1 26 48-73 47-73 (74)
3 d1h75a_ c.47.1.1 (A:) Glutared 27.4 4.9 0.00036 26.5 -0.5 28 47-74 46-74 (76)
4 d2efva1 a.43.1.12 (A:6-87) Unc 13.8 22 0.0016 25.0 0.5 17 61-77 30-47 (82)
5 d1wmib1 a.137.13.1 (B:7-67) Hy 12.5 1.1E+02 0.0081 19.4 3.7 19 67-85 2-20 (61)
6 d1gph11 c.61.1.1 (1:235-465) G 12.0 55 0.004 26.5 2.5 60 7-68 53-114 (231)
7 d2olua2 e.3.1.1 (A:293-692) Pe 11.6 62 0.0045 27.2 2.9 25 51-75 28-54 (400)
8 d1gqea_ e.38.1.1 (A:) Polypept 11.1 44 0.0032 28.7 1.7 31 52-82 40-77 (362)
9 d1z7ga1 c.61.1.1 (A:4-217) Hyp 10.9 1E+02 0.0076 23.9 3.9 36 42-78 6-48 (214)
10 d1nr4a_ d.9.1.1 (A:) Thymus an 10.8 47 0.0034 21.6 1.4 37 36-75 22-67 (67)
No 1
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.88 E-value=1.4 Score=36.24 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=25.2
Q ss_pred ccccccchhhccCccee--echhHHHHHHHHHHHHH
Q psy15711 47 AGYYAVPKIEYDQTKLG--IFYFSLHKLDELEKEEA 80 (248)
Q Consensus 47 ~kyd~ipei~~dg~ni~--~d~DI~eKLeeLErEEE 80 (248)
|=---||.|. ||-|++ |..++++.|.+.|.+=.
T Consensus 92 WV~l~IPkiE-DGNNFGV~VQe~vl~~l~~ve~~a~ 126 (200)
T g1avo.1 92 WLQLQIPRIE-DGNNFGVAVQEKVFELMTSLHTKLE 126 (200)
T ss_dssp HHHHTCCCCC-SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccc-cCCcccHHHHHHHHHHHHHHHHHHH
Confidence 4445699997 999999 88899877777766543
No 2
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=41.49 E-value=4.2 Score=26.50 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=21.0
Q ss_pred cccccchhhccCccee-echhHHHHHH
Q psy15711 48 GYYAVPKIEYDQTKLG-IFYFSLHKLD 73 (248)
Q Consensus 48 kyd~ipei~~dg~ni~-~d~DI~eKLe 73 (248)
.+..||=|+-||+-|+ +|||-+++|+
T Consensus 47 g~~tvP~i~i~g~~igGf~~d~l~~L~ 73 (74)
T d1r7ha_ 47 GYVQAPVVEVDGEHWSGFRPERIKQLQ 73 (74)
T ss_dssp TCBCCCEEEETTEEEESCCHHHHHHHH
T ss_pred CCCCcCEEEECCEEEeCCCHhHHHHhh
Confidence 5678999998898888 8988766665
No 3
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=27.40 E-value=4.9 Score=26.50 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=22.9
Q ss_pred ccccccchhhccCccee-echhHHHHHHH
Q psy15711 47 AGYYAVPKIEYDQTKLG-IFYFSLHKLDE 74 (248)
Q Consensus 47 ~kyd~ipei~~dg~ni~-~d~DI~eKLee 74 (248)
..+-.||=|+-||.-|+ ++||.+.+|++
T Consensus 46 ~g~~tvP~i~i~~~~i~Gf~~d~i~~L~~ 74 (76)
T d1h75a_ 46 QGFRQLPVVIAGDLSWSGFRPDMINRLHP 74 (76)
T ss_dssp TTCCSSCEEEETTEEEESCCHHHHGGGSC
T ss_pred cCCCCCCEEEECCEEEECCCHHHHHHHhc
Confidence 36788999998888888 99998877753
No 4
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366 {Methanococcus jannaschii [TaxId: 2190]}
Probab=13.78 E-value=22 Score=24.96 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=13.3
Q ss_pred cee-echhHHHHHHHHHH
Q psy15711 61 KLG-IFYFSLHKLDELEK 77 (248)
Q Consensus 61 ni~-~d~DI~eKLeeLEr 77 (248)
|+. |||||+.++.++++
T Consensus 30 nl~~IdpeiL~ka~e~~K 47 (82)
T d2efva1 30 NVENVDIDTLRRAIEAEK 47 (82)
T ss_dssp GCCCCCHHHHHHHHHSCC
T ss_pred ccCCCCHHHHHHHHhcCc
Confidence 444 99999999887654
No 5
>d1wmib1 a.137.13.1 (B:7-67) Hypothetical protein PHS014 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=12.53 E-value=1.1e+02 Score=19.43 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q psy15711 67 FSLHKLDELEKEEAQREEA 85 (248)
Q Consensus 67 DI~eKLeeLErEEE~LEae 85 (248)
|++.-|+-|--|=.+|++-
T Consensus 2 dvlkelerlkveiqrleam 20 (61)
T d1wmib1 2 DVLKELERLKVEIQRLEAM 20 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777753
No 6
>d1gph11 c.61.1.1 (1:235-465) Glutamine PRPP amidotransferase, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=11.97 E-value=55 Score=26.54 Aligned_cols=60 Identities=15% Similarity=-0.010 Sum_probs=32.5
Q ss_pred HHHHHHHHhhccccccCC-ccccccccccchhhhhhhccccccccccchhhccCccee-echhH
Q psy15711 7 AHKAIAKKVGKWGLKGEG-DRFIEDRYKLDELEKEEAQREEAGYYAVPKIEYDQTKLG-IFYFS 68 (248)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~kyd~ipei~~dg~ni~-~d~DI 68 (248)
|-...|+..|.+-..|-- .++++--|+....+... ..=.-||.+++++++ |+||. ||.-|
T Consensus 53 ~a~g~a~~~~ip~~~~~ikn~~~~RtFI~p~~~~R~-~~v~~K~~~~~~~i~-gK~vvlVDDSI 114 (231)
T d1gph11 53 AAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALRE-QGVRMKLSAVRGVVE-GKRVVMVDDSI 114 (231)
T ss_dssp HHHHHHHHHTCCBCCCEEECTTCSTTCCCCCHHHHH-HTCCCSEEECHHHHT-TCEEEEEESCC
T ss_pred HHHHHHHHhCCchhhcceehhhhhhccCCCchHHHH-HHHHHhhhhhhheec-cCceEEeehhh
Confidence 344566666665332211 12333333332222221 122459999999996 99999 88644
No 7
>d2olua2 e.3.1.1 (A:293-692) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}
Probab=11.62 E-value=62 Score=27.23 Aligned_cols=25 Identities=8% Similarity=-0.110 Sum_probs=19.6
Q ss_pred ccchhhccCccee--echhHHHHHHHH
Q psy15711 51 AVPKIEYDQTKLG--IFYFSLHKLDEL 75 (248)
Q Consensus 51 ~ipei~~dg~ni~--~d~DI~eKLeeL 75 (248)
.+..|+.+|.+|- ||++|.+.+++.
T Consensus 28 ~~~~~~~~G~~I~TTlD~~lQ~~ae~~ 54 (400)
T d2olua2 28 NLGNVLQSGIKIYTNMDKDVQKTLQND 54 (400)
T ss_dssp CHHHHTTBCCEEEECCCHHHHHHHHHH
T ss_pred hHHHhhCCCCEEEeCCCHHHHHHHHHH
Confidence 3446777899999 999999887653
No 8
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=11.13 E-value=44 Score=28.67 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=16.5
Q ss_pred cchhhccCccee-ec------hhHHHHHHHHHHHHHHH
Q psy15711 52 VPKIEYDQTKLG-IF------YFSLHKLDELEKEEAQR 82 (248)
Q Consensus 52 ipei~~dg~ni~-~d------~DI~eKLeeLErEEE~L 82 (248)
=|+||+|..+.. +- ..|.+.++.|+...+-+
T Consensus 40 dP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl 77 (362)
T d1gqea_ 40 QPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDV 77 (362)
T ss_dssp SGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388997555544 11 14455555555554433
No 9
>d1z7ga1 c.61.1.1 (A:4-217) Hypoxanthine-guanine PRTase (HGPRTase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.87 E-value=1e+02 Score=23.86 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=27.4
Q ss_pred hccccccccc----cchhhccCc--ceeech-hHHHHHHHHHHH
Q psy15711 42 AQREEAGYYA----VPKIEYDQT--KLGIFY-FSLHKLDELEKE 78 (248)
Q Consensus 42 ~~~~e~kyd~----ipei~~dg~--ni~~d~-DI~eKLeeLErE 78 (248)
+.+++.+|+. +||-++ .+ +|-|+. +|.+++++|=.|
T Consensus 6 ~~~~~~~~~~~~f~~p~~~~-~~~~~ilis~~~I~~~I~rLA~q 48 (214)
T d1z7ga1 6 ISDDEPGYDLDLFCIPNHYA-EDLERVFIPHGLIMDRTERLARD 48 (214)
T ss_dssp CCTTCCCBCGGGSCCCGGGT-TTEEEEEECHHHHHHHHHHHHHH
T ss_pred eCCCCCCCcchhcccchhhh-ccccEEecCHHHHHHHHHHHHHH
Confidence 4567777998 998875 55 666777 699999988666
No 10
>d1nr4a_ d.9.1.1 (A:) Thymus and activation-regulated chemokine, TRAC {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.76 E-value=47 Score=21.58 Aligned_cols=37 Identities=14% Similarity=-0.029 Sum_probs=22.5
Q ss_pred hhhhhhhccccccccccchhh---ccCcceeech------hHHHHHHHH
Q psy15711 36 ELEKEEAQREEAGYYAVPKIE---YDQTKLGIFY------FSLHKLDEL 75 (248)
Q Consensus 36 ~~~~~~~~~~e~kyd~ipei~---~dg~ni~~d~------DI~eKLeeL 75 (248)
....|+.+.+ +=.+|+|+ ..|+.|+.|| +++++|+.|
T Consensus 22 ~I~~y~~t~~---~C~~~avIf~tk~g~~iC~dP~~~WVq~~i~~l~~~ 67 (67)
T d1nr4a_ 22 KLKTWYQTSE---DCSRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQSL 67 (67)
T ss_dssp GEEEEEECCT---TSSSCCEEEEETTSCEEEECTTSHHHHHHHHHHHHC
T ss_pred HeEEEEECCC---CCCCCEEEEEeCCCCEEeCCCChHHHHHHHHHHhcC
Confidence 3344555432 23466664 2499999999 566777654
Done!