RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15711
(248 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 3e-04
Identities = 41/243 (16%), Positives = 77/243 (31%), Gaps = 83/243 (34%)
Query: 10 AIAKKVGKWGLKGEGDRFIEDRYKLDELEKEEAQREEAGYYAVPKIEYDQTKLGIFYFSL 69
A+ V W D +D Y G+ ++ I + +F
Sbjct: 1640 KAAQDV--WN---RADNHFKDTY---------------GF-SILDIVINNPVNLTIHFGG 1678
Query: 70 HKLDELEKEEAQREEAGYYAVPKIEYDQTM---IEIKELAKQIRDK-KSIM---RQDALL 122
K +R Y + ++ + ++ +++ K+I + S + L
Sbjct: 1679 EK--------GKRIRENY---SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 123 IKQSTKPRLPRTALSK------NREGV-------------E--ARASRSRGRSVEGPGGK 161
Q T+P L T + K +G+ E A AS + S+E
Sbjct: 1728 ATQFTQPAL--TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE----- 1780
Query: 162 RQRLDSEGNAVTVSKSRARSDSKVTPRDQSG--------LRDPQVLMKVKKIAHKAIAKK 213
+ V V R + PRD+ G + +V + A + + ++
Sbjct: 1781 --------SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 214 VGK 216
VGK
Sbjct: 1833 VGK 1835
Score = 30.0 bits (67), Expect = 0.88
Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 25/94 (26%)
Query: 157 GPGGKRQR-----------LDSEGNAVTVSKSRARSDSKVTPRDQSG-LRDPQV----LM 200
G GKR R +D + + K + T R + G L Q L
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 201 KVKKIAHKAIAKKVGKWGLKGEGDRFIGTKKPKH 234
+ KA + + GL F G H
Sbjct: 1738 ----LMEKAAFEDLKSKGLIPADATFAG-----H 1762
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.11
Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 40/188 (21%)
Query: 70 HKLD-ELEKEEAQREEAGYYAVPKIEYDQTMIEIKELAKQIRDKKSIMRQDALLIKQSTK 128
H +D E + + Q ++ + +++++ K I K+ I D +++ +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI---DHIIMSKDAV 61
Query: 129 PRLPR---TALSKNREGVEARASRSRGRSVEGPGGKR-----QRLDSEGNAVTVSKSRAR 180
R T LSK E V+ + VE + +E +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQ--------KFVEEVLRINYKFLMSPIKTEQRQPS-----MM 108
Query: 181 SDSKVTPRDQSGLRDPQVLMK--VKKI-AHKAIAKKVGKWGLKGEGDRFIGTKKPKHLFS 237
+ + RD+ D QV K V ++ + + + + + L+ + I
Sbjct: 109 TRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLE--LRPAKNVLI------D--- 156
Query: 238 GKRGIGKT 245
G G GKT
Sbjct: 157 GVLGSGKT 164
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.77
Identities = 8/46 (17%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 4 KKIAHKAIAKKVGKWGLKGEGDRFIEDRYKL--DELEKEEAQREEA 47
K++ A KV + + + + +E+ + +++EK + A
Sbjct: 96 KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 27.9 bits (62), Expect = 3.4
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 11/59 (18%)
Query: 196 PQVLMKVKKIAHKAIAKKVGKWGLKGEGDRFIGTKKP--------KH-LFSGKRGIGKT 245
P L +V +K K+ W E + K + + G GIGKT
Sbjct: 35 PTNLQQV--CGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKT 91
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp,
clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A
{Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B*
3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 27.6 bits (62), Expect = 4.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 235 LFSGKRGIGKT 245
LFSG RG+GKT
Sbjct: 42 LFSGTRGVGKT 52
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 27.2 bits (61), Expect = 5.4
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 235 LFSGKRGIGKT 245
LFSG RG+GKT
Sbjct: 49 LFSGTRGVGKT 59
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold,
gluconeogenesis, glycolysis, structural genomics; HET:
G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A*
Length = 446
Score = 26.9 bits (60), Expect = 7.4
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 54 KIEYDQTKLGIFYFSLHKLDEL------------EKEEAQREEAGYYAVPKIEYDQTMIE 101
I+ D +K F F H+L + E A + G+ +P +
Sbjct: 6 HIQLDFSKTLEF-FGEHELKQQQEIVKSIHKTIHEGTGAGSDFLGWVDLPVDYDKEEFSR 64
Query: 102 IKELAKQIRDK 112
I E +K+I++
Sbjct: 65 IVEASKRIKEN 75
>1h16_A Formate acetyltransferase 1; lyase, glycyl radical enzyme,
acyltransferase, acetylation; HET: COA PG4; 1.53A
{Escherichia coli} SCOP: c.7.1.1 PDB: 1h17_A* 1h18_A*
1mzo_A* 2pfl_A 3pfl_A 1cm5_A 1qhm_A
Length = 759
Score = 26.9 bits (59), Expect = 8.1
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 69 LHKLDELEKE-EAQREEAGYYAVPKIEYDQTMIEIKELAKQIRDKKSIMRQDALLIKQST 127
L+ +D L K+ AQ + +QT+ +E+A+Q R + A +
Sbjct: 186 LYGIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAKYGYDIS 245
Query: 128 KPRLPRTA 135
P A
Sbjct: 246 GP--ATNA 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.132 0.366
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,721,590
Number of extensions: 227527
Number of successful extensions: 466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 22
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.6 bits)