RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15711
         (248 letters)



>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
          tetrahydromethanopterin reductase {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 321

 Score = 28.1 bits (61), Expect = 0.87
 Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 61 KLGIFYFSLHKLDELEKEEAQR-EEAGYYAV 90
          K GI +     ++++  +  +  E+ G+   
Sbjct: 2  KFGIEFVPNEPIEKI-VKLVKLAEDVGFEYA 31


>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 253

 Score = 26.7 bits (57), Expect = 3.1
 Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 1/46 (2%)

Query: 201 KVKKIAHKAIAKKVGKWGLKGEGDRFIGTKKPKH-LFSGKRGIGKT 245
                    +A          +     G+   +  +  G  GIGKT
Sbjct: 21  GSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKT 66


>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 442

 Score = 26.4 bits (57), Expect = 3.9
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 55  IEYDQTKLGIFYFSLHKLDEL------------EKEEAQREEAGYYAVPKIEYDQTMIEI 102
           I +D +    F    ++LD L            E++    +  G+   P          I
Sbjct: 2   ISFDYSNALPF-MQENELDYLSEFVKAAHHMLHERKGPGSDFLGWVDWPIRYDKNEFSRI 60

Query: 103 KELAKQIRDKK 113
           K+ A++IR+  
Sbjct: 61  KQAAERIRNHS 71


>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione
           S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 221

 Score = 25.7 bits (55), Expect = 4.5
 Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 1/70 (1%)

Query: 8   HKAIAKKVG-KWGLKGEGDRFIEDRYKLDELEKEEAQREEAGYYAVPKIEYDQTKLGIFY 66
             + A+K G            I       +L +      + G + +P             
Sbjct: 137 ILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKYGAFGLPTTVAHVDGKTYML 196

Query: 67  FSLHKLDELE 76
           F   +++ L 
Sbjct: 197 FGSDRMELLA 206


>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
           III, N-domain {Escherichia coli [TaxId: 562]}
          Length = 207

 Score = 25.8 bits (55), Expect = 4.9
 Identities = 3/11 (27%), Positives = 4/11 (36%)

Query: 235 LFSGKRGIGKT 245
           L     G+G  
Sbjct: 28  LIQALPGMGDD 38


>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 252

 Score = 25.1 bits (53), Expect = 7.4
 Identities = 6/14 (42%), Positives = 6/14 (42%)

Query: 232 PKHLFSGKRGIGKT 245
           P  L  G  G GK 
Sbjct: 34  PHLLLYGPNGTGKK 47


>d3eeqa2 c.152.1.1 (A:8-214) Cobalamin biosynthesis protein G, CbiG
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 207

 Score = 24.8 bits (54), Expect = 9.5
 Identities = 9/62 (14%), Positives = 20/62 (32%)

Query: 5   KIAHKAIAKKVGKWGLKGEGDRFIEDRYKLDELEKEEAQREEAGYYAVPKIEYDQTKLGI 64
           KI +     K+    L+ E          ++  E  +   EE  Y    + + +     +
Sbjct: 142 KIINPENIVKINAALLRDESICIDGIDVNVNFPENIKVNSEECSYIISLRGDKEYKDKIV 201

Query: 65  FY 66
            +
Sbjct: 202 VW 203


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 891,018
Number of extensions: 42645
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 12
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.1 bits)