BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15712
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 171 bits (432), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 75/122 (61%), Positives = 100/122 (81%)
Query: 231 LPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVI 290
LPSI+P +TII+ G PNVGKSSF+N ++RA+VDVQ Y+FTTK+LYVGH D+K ++Q+I
Sbjct: 22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQII 81
Query: 291 DTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFN 350
DTPG+LD + E+RN IEM +TALAH+ +L+ IDISEQCG +I+EQI LF SI+ +F+
Sbjct: 82 DTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS 141
Query: 351 NK 352
NK
Sbjct: 142 NK 143
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 152/276 (55%)
Query: 76 FKKIAVVPTAKEFVDIMLSKTQRKTPTVIHKQYKISRIRSFYMRKIKYTQSNFHERLSQI 135
F++ V TA E +D + ++ + + K+ + R +++ + + L ++
Sbjct: 5 FERXPTVLTADELIDKAFRRAEKAASSFKPRGNKVKKARLREELRVRTVSNVVRDNLRKV 64
Query: 136 IQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLYR 195
++ P L + FY +L+++L D+D + ++ A +I + + Y+ ++Y++
Sbjct: 65 LERTPGLSTLPKFYQELVDVLVDRDTFHKAXAGIDWAIRIIRELEERYVERIRYSNDPNE 124
Query: 196 CKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFL 255
+L++ GR+A++++ L YL + R+ L LP +D T++I G PNVGKS+ L
Sbjct: 125 IAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLL 184
Query: 256 NKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315
+T A ++ Y FTT+ + VG + Y R+Q+IDTPG+LD + +RN IE QA+ AL
Sbjct: 185 KALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244
Query: 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNN 351
+L ++Y D SE CG ++EQI LF+ + F +
Sbjct: 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD 280
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 245 GFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRN 304
GFP+VGKS+ L+K+T + + Y FTT G YK + Q++D PGI+D + + R
Sbjct: 79 GFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRG 138
Query: 305 IIEMQAVTALAHLRAAVLYFIDISEQCGH 333
+ V A+A + +D+++ H
Sbjct: 139 --RGKQVIAVARTCNLLFIILDVNKPLHH 165
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY-KYLRWQVIDTPGILDHS 299
+ + G+PN GKSS L +TRA + PY FTT S +G + + R+ + D PGI++ +
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 219
Query: 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330
E + + ++ + +A R +LY +D +++
Sbjct: 220 SEGKG-LGLEFLRHIARTR-VLLYVLDAADE 248
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 221 LEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKS-LYVG 278
LE R++ RLP F R I++ G NVGKSSF+N + +V V YA TT +Y
Sbjct: 18 LEDPRRYTMRLPDAG-FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKS 76
Query: 279 HTDYKYLRWQVIDTPGILD 297
+ ++DTPG+ D
Sbjct: 77 MELHPIGPVTLVDTPGLDD 95
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300
I + G PNVGKS+ N +T +V + + T G +Y +++V+D PG+ +SL
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV--YSL 67
Query: 301 EDRNIIEMQA 310
+I E+ A
Sbjct: 68 TANSIDEIIA 77
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300
I + G PNVGKS+ N +T +V + + T G +Y +++V+D PG+ +SL
Sbjct: 7 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV--YSL 64
Query: 301 EDRNIIEMQA 310
+I E+ A
Sbjct: 65 TANSIDEIIA 74
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300
I + G PNVGKS+ N +T +V + + T G +Y +++V+D PG+ +SL
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV--YSL 63
Query: 301 EDRNIIEMQA 310
+I E+ A
Sbjct: 64 TANSIDEIIA 73
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300
I + G PNVGKS+ N +T +V + + T G +Y +++V+D PG+ +SL
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV--YSL 63
Query: 301 EDRNIIEMQA 310
+I E+ A
Sbjct: 64 TANSIDEIIA 73
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHT 280
I + G PNVGKS+F + T DV++ Y FTT VG T
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVT 42
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPY-AFTTKSLYVG-HTDYKYLRWQVIDTPGILDH 298
I I G PNVGKS+ LNK+ + + A TT+ VG HT+ Y + +DTPG+ H
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY-QAIYVDTPGL--H 64
Query: 299 SLEDRNI 305
E R I
Sbjct: 65 MEEKRAI 71
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 233 SID-PFTRTIIICGFPNVGKSSFLNKITRADVDVQPY-AFTTKSLYVG-HTDYKYLRWQV 289
SID + I I G PNVGKS+ LNK+ + + A TT+ VG HT+ Y +
Sbjct: 2 SIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY-QAIY 60
Query: 290 IDTPGILDHSLEDRNI 305
+DTPG+ H E R I
Sbjct: 61 VDTPGL--HMEEKRAI 74
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 230 RLPSIDPFTRTIIICGFPNVGKSSFLNKITRADV----DVQPYAFTTKSLYVGHTDYKYL 285
R + P +I G PNVGKS+ +N++ + ++ D + + + VG
Sbjct: 112 RAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK------ 165
Query: 286 RWQVIDTPGILDHSLEDRNIIEMQAVTA 313
+++DTPGIL ED + AVT
Sbjct: 166 ELELLDTPGILWPKFEDELVGLRLAVTG 193
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298
+T+ + G PNVGK++ N +T V + T G +Y+ + V+D PGI +
Sbjct: 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI--Y 61
Query: 299 SLEDRNIIEMQA 310
SL +I E+ A
Sbjct: 62 SLTAHSIDELIA 73
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVG 278
+ I G PNVGKS+ N +TRA+ Y F T VG
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG 41
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVG 278
+ I G PNVGKS+ N +TRA+ Y F T VG
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG 41
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 241 IIICGFPNVGKSSFLNKIT-RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299
++I G PN GKSS LN + R V A TT+ + H + +IDT G+ + S
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 69
Query: 300 LE 301
E
Sbjct: 70 DE 71
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 241 IIICGFPNVGKSSFLNKIT-RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299
++I G PN GKSS LN + R V A TT+ + H + +IDT G+ + S
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 66
Query: 300 LE 301
E
Sbjct: 67 DE 68
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 243 ICGFPNVGKSSFLNKITRADVDVQPYAFTT 272
I G PNVGKS+ N +T+A ++ Y F T
Sbjct: 7 IVGLPNVGKSTLFNALTKAGIEAANYPFCT 36
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 241 IIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVI--DTPGILD 297
+ I G PNVGKS+ LN + V + P A TT+ +G + Q+I DTPGI +
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN-EAQIIFLDTPGIYE 71
Query: 298 HSLED---RNIIEMQAVTALAHLRAA--VLYFIDISE 329
D +++E+ A L A +L+ ID +E
Sbjct: 72 PKKSDVLGHSMVEI----AKQSLEEADVILFMIDATE 104
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 241 IIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVI--DTPGILD 297
+ I G PNVGKS+ LN + V + P A TT+ +G + Q+I DTPGI +
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN-EAQIIFLDTPGIYE 70
Query: 298 HSLED---RNIIEMQAVTALAHLRAA--VLYFIDISE 329
D +++E+ A L A +L+ ID +E
Sbjct: 71 PKKSDVLGHSMVEI----AKQSLEEADVILFMIDATE 103
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 241 IIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299
+ I G PNVGKSS LN +++D V TT+ + + QV+DT GI + S
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS 286
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 241 IIICGFPNVGKSSFLNKIT-RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299
++I G PN GKSS LN + R V A TT+ + H +IDT G+ + S
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREAS 66
Query: 300 LE 301
E
Sbjct: 67 DE 68
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 241 IIICGFPNVGKSSFLNKI--TRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI--- 295
++I G PNVGKSS N++ R+ V V T+ L G + R+ ++DT G+
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62
Query: 296 ----------LDHSLEDRNIIEMQAVTALAHLRAA 320
+D +LED ++ + AV A L A
Sbjct: 63 DKWEKKIQEKVDRALEDAEVV-LFAVDGRAELTQA 96
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 241 IIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299
++I G PNVGKS+ LN++ D V TT+ + + + ++++DT G+
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS-- 303
Query: 300 LEDRNIIEMQAVT-ALAHLRAA--VLYFIDIS 328
E +++E + L + A VL+ +D S
Sbjct: 304 -ETNDLVERLGIERTLQEIEKADIVLFVLDAS 334
>pdb|1RH1|A Chain A, Crystal Structure Of The Cytotoxic Bacterial Protein
Colicin B At 2.5 A Resolution
Length = 511
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 20/122 (16%)
Query: 72 PMYNFKKIAVVPTAKEFVDIMLSKTQRKTPT----VIHKQYKISRIRSFYMRKIKYT-QS 126
P N K + P + D++LS Q TP I + IS ++ + YT S
Sbjct: 206 PGTNIKDVYSAPVSPNLPDLVLSVGQMNTPVRSNPEIQEDGVISETGNYV--EAGYTMSS 263
Query: 127 NFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRL 186
N H+ +I FP+ + P Y + IL D L R +N AKD R+
Sbjct: 264 NNHD----VIVRFPEGSGVSPLYISAVEIL---DSNSL------SQRQEAENNAKDDFRV 310
Query: 187 MK 188
K
Sbjct: 311 KK 312
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 219 EYLEQVRQHLSRLPSIDPFTRTIIIC--GFPNVGKSSFLNKITRAD-VDVQPYAFTTKSL 275
+ L+ V +H +P I C G PNVGKSS +N + + V V A TT+
Sbjct: 174 DLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA 233
Query: 276 YVGHTDYKYLRWQVIDTPGI 295
Y + ++DT G+
Sbjct: 234 VDTSFTYNQQEFVIVDTAGM 253
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 241 IIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295
+ I G PNVGKS+ N+I + V+ T+ ++ + +IDT GI
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 81
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295
++ + I G PNVGKS+ LN + V + P TT+ G + +DTPG+
Sbjct: 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65
Query: 296 LDHSLEDRNIIEMQAVTALAHLRAAVLYFIDI 327
++ + ALA + AV++ +D+
Sbjct: 66 HKPMDALGEFMDQEVYEALADVN-AVVWVVDL 96
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTT 272
I I G PNVGKS+F N +T + + + F T
Sbjct: 25 IGIVGLPNVGKSTFFNVLTNSQASAENFPFCT 56
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 23/82 (28%)
Query: 225 RQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKIT---RADVDVQPYAFTTKSLYVGHTD 281
R+ L + S D R ++I G PN GKS+ +NK+ + V QP G T
Sbjct: 87 RKVLLKKLSFDRLAR-VLIVGVPNTGKSTIINKLKGKRASSVGAQP----------GIT- 134
Query: 282 YKYLRW-------QVIDTPGIL 296
K ++W +++DTPGIL
Sbjct: 135 -KGIQWFSLENGVKILDTPGIL 155
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQV-IDTPGILDHS 299
+ + GFP+VGKS+ L+ ++ A + Y FTT +G + R V D PG+++ +
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXADLPGLIEGA 220
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 221 LEQVRQHLSRLPSIDPFTRTIIIC--GFPNVGKSSFLNK-ITRADVDVQPYAFTTKSLYV 277
L+ V +H +P I C G PNVGKSS +N + V V A TT+
Sbjct: 156 LDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVD 215
Query: 278 GHTDYKYLRWQVIDTPG 294
Y + ++DT G
Sbjct: 216 TSFTYNQQEFVIVDTAG 232
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 241 IIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295
+ I G PNVGKS+ N+I + V+ T+ ++ + +IDT GI
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
+ + G PNVGK+S N +T V + T G YK +ID PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 240 TIIICGFPNVGKSSFLNK-ITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298
T++I G PNVGKS+ NK + + V+ T+ ++ ++++DT G+ D+
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 62
Query: 299 SLEDRNIIEMQA-VTALAHLRAA--VLYFID 326
++II + L +R A VL+ +D
Sbjct: 63 P---QDIISQKXKEVTLNXIREADLVLFVVD 90
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 241 IIICGFPNVGKSSFLNKI-TRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299
+ I G PNVGKS+ N I + V P TT+ ++ +DT G+ S
Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 242
Query: 300 -LEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQ 338
+E R + + + + A + I + G + Q+Q
Sbjct: 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ 282
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
+ + G PNVGK+S N +T V + T G YK +ID PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
+ + G PNVGK+S N +T V + T G YK +ID PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3RPL|A Chain A, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803 In
Complex With Fructose-1,6- Bisphosphate
pdb|3RPL|C Chain C, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803 In
Complex With Fructose-1,6- Bisphosphate
pdb|3RPL|D Chain D, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803 In
Complex With Fructose-1,6- Bisphosphate
Length = 379
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 38 KNYDLPDE-YKYDVIPEFMEGVNIADYID------------PDIFKMPMYNFKKIAVVPT 84
K++ PDE + D+ + EG N+ Y +F P + KK+A P
Sbjct: 115 KSFCNPDELVEIDIAVDPCEGTNLVAYGQNGSMAVLAISEKGGLFAAPDFYMKKLAAPPA 174
Query: 85 AKEFVDIMLSKTQ 97
AK VDI S T+
Sbjct: 175 AKGHVDIDKSATE 187
>pdb|3ROJ|A Chain A, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803
pdb|3ROJ|B Chain B, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803
pdb|3ROJ|C Chain C, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803
pdb|3ROJ|D Chain D, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803
Length = 379
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 38 KNYDLPDE-YKYDVIPEFMEGVNIADYID------------PDIFKMPMYNFKKIAVVPT 84
K++ PDE + D+ + EG N+ Y +F P + KK+A P
Sbjct: 115 KSFCNPDELVEIDIAVDPCEGTNLVAYGQNGSMAVLAISEKGGLFAAPDFYMKKLAAPPA 174
Query: 85 AKEFVDIMLSKTQ 97
AK VDI S T+
Sbjct: 175 AKGHVDIDKSATE 187
>pdb|3RPL|B Chain B, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803 In
Complex With Fructose-1,6- Bisphosphate
Length = 379
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 38 KNYDLPDE-YKYDVIPEFMEGVNIADYID------------PDIFKMPMYNFKKIAVVPT 84
K++ PDE + D+ + EG N+ Y +F P + KK+A P
Sbjct: 115 KSFCNPDELVEIDIAVDPCEGTNLVAYGQNGSMAVLAISEKGGLFAAPDFYMKKLAAPPA 174
Query: 85 AKEFVDIMLSKTQ 97
AK VDI S T+
Sbjct: 175 AKGHVDIDKSATE 187
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 29 QDDYVLDLKKNYDLPDEYKYDVIPEFMEGVNIADY-IDPDIFKMPMYN-FKKIAVVPTAK 86
+D +L K Y+LPD+ + I EF E ++ D D I + + + PT
Sbjct: 287 EDGNILGHKLEYNLPDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEA 346
Query: 87 EFVDIMLSKTQRKTPTVIHKQYKISRIRSFYMRKIKYTQSNFHERLSQIIQEFPKLDNIH 146
E D++ T+ ++ + RK+KYT S E + + + F K N +
Sbjct: 347 ELQDMINEVDADGDGTIDFPEF-----LTMMARKMKYTDS--EEEIREAFRVFDKDGNGY 399
Query: 147 PFYADLMNIL 156
A+L +++
Sbjct: 400 ISAAELRHVM 409
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 29 QDDYVLDLKKNYDLPDEYKYDVIPEFMEGVNIADY-IDPDIFKMPMYN-FKKIAVVPTAK 86
+D +L K Y+LPD+ + I EF E ++ D D I + + + PT
Sbjct: 287 EDGNILGHKLEYNLPDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEA 346
Query: 87 EFVDIMLSKTQRKTPTVIHKQYKISRIRSFYMRKIKYTQSNFHERLSQIIQEFPKLDNIH 146
E D++ T+ ++ + RK+KYT S E + + + F K N +
Sbjct: 347 ELQDMINEVDADGDGTIDFPEF-----LTMMARKMKYTDS--EEEIREAFRVFDKDGNGY 399
Query: 147 PFYADLMNIL 156
A+L +++
Sbjct: 400 ISAAELRHVM 409
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 218 LEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLY 276
LE L ++Q D + TI++ G VGKSS +N I V + P+
Sbjct: 26 LELLGNLKQE-------DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV 78
Query: 277 VGHTDYKYLRWQVIDTPGILDHS 299
+ +IDTPG+++
Sbjct: 79 MVSRSRAGFTLNIIDTPGLIEGG 101
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL----RWQVIDTPG 294
+ + + G NVGKS+F+N+ + D TT D + + DTPG
Sbjct: 161 KDVYVVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPG 220
Query: 295 ILDH 298
I++H
Sbjct: 221 IINH 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,007,193
Number of Sequences: 62578
Number of extensions: 407677
Number of successful extensions: 1056
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1025
Number of HSP's gapped (non-prelim): 51
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)