Query psy15712
Match_columns 358
No_of_seqs 483 out of 2892
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:32:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1084 Predicted GTPase [Gene 100.0 2.3E-70 5E-75 514.1 30.9 285 73-358 2-287 (346)
2 KOG1490|consensus 100.0 3.9E-67 8.5E-72 511.2 24.4 288 71-358 1-288 (620)
3 PF08155 NOGCT: NOGCT (NUC087) 100.0 2.9E-30 6.2E-35 180.1 2.1 52 17-68 1-55 (55)
4 COG2262 HflX GTPases [General 99.9 1E-26 2.3E-31 225.2 18.7 222 118-358 76-311 (411)
5 TIGR03156 GTP_HflX GTP-binding 99.9 1.5E-24 3.3E-29 212.3 22.9 224 118-358 73-308 (351)
6 PRK11058 GTPase HflX; Provisio 99.9 1E-24 2.3E-29 218.3 20.2 224 118-358 81-316 (426)
7 PF02421 FeoB_N: Ferrous iron 99.8 5.7E-19 1.2E-23 153.6 12.8 110 240-358 2-112 (156)
8 cd01897 NOG NOG1 is a nucleola 99.8 1.2E-18 2.6E-23 151.6 13.5 120 239-358 1-120 (168)
9 KOG0410|consensus 99.8 5.5E-18 1.2E-22 159.6 15.1 197 126-332 71-272 (410)
10 COG1160 Predicted GTPases [Gen 99.8 3.3E-18 7.1E-23 168.5 12.9 113 239-357 4-118 (444)
11 COG1159 Era GTPase [General fu 99.8 4E-18 8.7E-23 159.9 12.9 115 237-357 5-120 (298)
12 KOG1490|consensus 99.7 3.7E-19 8.1E-24 175.3 -0.5 58 16-73 387-445 (620)
13 PF01926 MMR_HSR1: 50S ribosom 99.7 1.3E-16 2.9E-21 131.4 14.3 112 240-358 1-114 (116)
14 PRK12299 obgE GTPase CgtA; Rev 99.7 2.6E-16 5.6E-21 153.3 13.9 115 240-358 160-278 (335)
15 COG0486 ThdF Predicted GTPase 99.7 9.4E-16 2E-20 151.6 16.6 110 237-357 216-330 (454)
16 TIGR00436 era GTP-binding prot 99.7 6.9E-16 1.5E-20 146.1 13.8 112 240-358 2-114 (270)
17 PRK12298 obgE GTPase CgtA; Rev 99.7 4E-16 8.7E-21 154.9 12.4 117 240-358 161-282 (390)
18 cd01878 HflX HflX subfamily. 99.7 4E-15 8.7E-20 134.3 16.9 120 235-358 38-160 (204)
19 PRK12297 obgE GTPase CgtA; Rev 99.6 1.9E-15 4.2E-20 151.1 14.3 117 240-358 160-281 (424)
20 PRK12296 obgE GTPase CgtA; Rev 99.6 2.3E-15 4.9E-20 152.7 13.9 89 239-329 160-248 (500)
21 TIGR02729 Obg_CgtA Obg family 99.6 1.8E-15 4E-20 147.1 12.2 117 239-357 158-279 (329)
22 PRK05291 trmE tRNA modificatio 99.6 3.3E-14 7.1E-19 143.9 20.7 113 237-358 214-328 (449)
23 COG1160 Predicted GTPases [Gen 99.6 2.2E-15 4.8E-20 148.6 10.5 154 198-358 133-296 (444)
24 cd01898 Obg Obg subfamily. Th 99.6 4.3E-15 9.4E-20 129.2 11.1 115 240-357 2-120 (170)
25 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1E-14 2.2E-19 131.4 12.8 114 240-358 2-123 (196)
26 COG1163 DRG Predicted GTPase [ 99.6 2.3E-15 4.9E-20 142.4 8.3 95 235-331 60-154 (365)
27 KOG1489|consensus 99.6 4E-15 8.7E-20 140.2 9.8 114 240-357 198-318 (366)
28 PRK15494 era GTPase Era; Provi 99.6 1.7E-14 3.6E-19 141.1 14.6 115 237-357 51-166 (339)
29 PRK00089 era GTPase Era; Revie 99.6 1.5E-14 3.1E-19 138.3 13.9 116 237-358 4-120 (292)
30 PRK03003 GTP-binding protein D 99.6 1.9E-14 4.1E-19 146.7 15.4 115 237-357 37-152 (472)
31 TIGR03594 GTPase_EngA ribosome 99.6 1.3E-14 2.8E-19 145.8 13.9 112 240-357 1-113 (429)
32 TIGR00450 mnmE_trmE_thdF tRNA 99.6 4E-14 8.7E-19 142.8 16.8 110 237-357 202-316 (442)
33 cd01900 YchF YchF subfamily. 99.6 1.8E-14 3.9E-19 136.5 12.6 87 241-329 1-104 (274)
34 PTZ00258 GTP-binding protein; 99.6 2.5E-14 5.4E-19 141.3 14.0 91 237-329 20-127 (390)
35 PRK00093 GTP-binding protein D 99.6 3.4E-14 7.4E-19 143.1 14.7 113 239-357 2-115 (435)
36 TIGR00991 3a0901s02IAP34 GTP-b 99.6 6.1E-14 1.3E-18 134.1 14.8 130 226-358 26-160 (313)
37 cd01881 Obg_like The Obg-like 99.6 1.7E-14 3.8E-19 125.8 9.7 114 243-358 1-127 (176)
38 COG0370 FeoB Fe2+ transport sy 99.6 3.9E-14 8.6E-19 145.5 13.7 112 238-358 3-115 (653)
39 cd01894 EngA1 EngA1 subfamily. 99.5 6.3E-14 1.4E-18 119.6 12.5 111 242-358 1-112 (157)
40 PRK09601 GTP-binding protein Y 99.5 5.7E-14 1.2E-18 137.4 13.6 89 239-329 3-108 (364)
41 KOG1191|consensus 99.5 6.7E-14 1.5E-18 138.5 12.9 110 237-347 267-378 (531)
42 COG0536 Obg Predicted GTPase [ 99.5 3E-14 6.6E-19 135.7 10.1 115 240-358 161-282 (369)
43 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.8E-13 3.9E-18 116.6 14.0 112 239-358 2-114 (157)
44 COG0218 Predicted GTPase [Gene 99.5 1.5E-13 3.3E-18 122.8 13.3 114 237-358 23-142 (200)
45 cd01879 FeoB Ferrous iron tran 99.5 7.7E-14 1.7E-18 119.5 10.6 106 243-358 1-108 (158)
46 PRK09518 bifunctional cytidyla 99.5 1.9E-13 4E-18 145.8 15.8 117 236-358 273-390 (712)
47 cd01853 Toc34_like Toc34-like 99.5 2E-13 4.3E-18 128.0 14.0 119 237-358 30-156 (249)
48 cd01861 Rab6 Rab6 subfamily. 99.5 2.8E-13 6E-18 116.7 13.6 107 240-357 2-111 (161)
49 cd01896 DRG The developmentall 99.5 1.4E-13 3.1E-18 127.7 12.4 89 240-330 2-90 (233)
50 cd01899 Ygr210 Ygr210 subfamil 99.5 1.7E-13 3.7E-18 132.6 13.3 87 241-329 1-111 (318)
51 cd04163 Era Era subfamily. Er 99.5 4.4E-13 9.5E-18 114.6 14.4 114 238-357 3-117 (168)
52 PRK09602 translation-associate 99.5 2.1E-13 4.6E-18 135.7 13.7 89 239-329 2-114 (396)
53 cd04171 SelB SelB subfamily. 99.5 3.7E-13 8.1E-18 115.8 13.3 105 240-357 2-110 (164)
54 PRK03003 GTP-binding protein D 99.5 4.1E-13 8.8E-18 136.9 15.8 115 237-357 210-328 (472)
55 cd01895 EngA2 EngA2 subfamily. 99.5 5.7E-13 1.2E-17 115.1 14.1 114 238-357 2-119 (174)
56 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 4.2E-13 9.2E-18 116.2 12.9 105 239-357 1-108 (168)
57 cd04142 RRP22 RRP22 subfamily. 99.5 4.4E-13 9.5E-18 121.3 13.1 115 240-357 2-122 (198)
58 TIGR03598 GTPase_YsxC ribosome 99.5 1.3E-12 2.9E-17 115.7 14.2 114 237-358 17-136 (179)
59 cd01868 Rab11_like Rab11-like. 99.4 1.5E-12 3.3E-17 112.8 13.6 109 238-357 3-114 (165)
60 TIGR03594 GTPase_EngA ribosome 99.4 2.2E-12 4.8E-17 129.6 16.7 114 237-357 171-289 (429)
61 PRK00093 GTP-binding protein D 99.4 1.6E-12 3.4E-17 131.0 15.4 114 237-357 172-290 (435)
62 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 1.8E-12 3.9E-17 112.6 13.4 108 239-357 3-113 (166)
63 PF04548 AIG1: AIG1 family; I 99.4 1E-12 2.2E-17 120.2 12.3 118 240-358 2-123 (212)
64 cd01866 Rab2 Rab2 subfamily. 99.4 2.2E-12 4.8E-17 112.7 13.5 109 238-357 4-115 (168)
65 PRK09554 feoB ferrous iron tra 99.4 1.4E-12 3.1E-17 139.4 14.1 113 238-357 3-118 (772)
66 PRK09518 bifunctional cytidyla 99.4 2.4E-12 5.1E-17 137.4 15.7 116 237-358 449-568 (712)
67 KOG1423|consensus 99.4 1.6E-12 3.6E-17 122.2 12.4 108 237-345 71-183 (379)
68 COG0012 Predicted GTPase, prob 99.4 7.3E-13 1.6E-17 128.3 10.3 90 238-329 2-109 (372)
69 smart00175 RAB Rab subfamily o 99.4 3.8E-12 8.3E-17 109.6 13.6 107 240-357 2-111 (164)
70 cd04119 RJL RJL (RabJ-Like) su 99.4 4E-12 8.6E-17 109.7 13.5 107 240-357 2-116 (168)
71 cd01867 Rab8_Rab10_Rab13_like 99.4 4.5E-12 9.8E-17 110.6 13.3 109 238-357 3-114 (167)
72 cd04124 RabL2 RabL2 subfamily. 99.4 4.4E-12 9.5E-17 110.2 13.2 107 240-357 2-110 (161)
73 cd04160 Arfrp1 Arfrp1 subfamil 99.4 2.6E-12 5.7E-17 111.4 11.7 107 240-357 1-113 (167)
74 cd04106 Rab23_lke Rab23-like s 99.4 4.5E-12 9.8E-17 109.2 13.1 107 240-357 2-112 (162)
75 cd00154 Rab Rab family. Rab G 99.4 6E-12 1.3E-16 106.7 13.4 107 240-357 2-111 (159)
76 cd04157 Arl6 Arl6 subfamily. 99.4 4.2E-12 9E-17 109.3 12.3 107 240-358 1-111 (162)
77 cd01862 Rab7 Rab7 subfamily. 99.4 7E-12 1.5E-16 109.0 13.5 107 240-357 2-115 (172)
78 cd04113 Rab4 Rab4 subfamily. 99.4 7.2E-12 1.6E-16 108.1 13.4 107 240-357 2-111 (161)
79 cd01864 Rab19 Rab19 subfamily. 99.4 7.3E-12 1.6E-16 108.8 13.5 109 238-357 3-114 (165)
80 cd01865 Rab3 Rab3 subfamily. 99.4 7E-12 1.5E-16 109.1 13.1 108 239-357 2-112 (165)
81 cd04145 M_R_Ras_like M-Ras/R-R 99.4 6.9E-12 1.5E-16 108.2 12.7 107 239-357 3-113 (164)
82 PRK04213 GTP-binding protein; 99.4 7.1E-12 1.5E-16 112.7 13.3 89 237-329 8-102 (201)
83 KOG1424|consensus 99.4 8E-13 1.7E-17 131.4 7.7 149 150-302 193-376 (562)
84 cd04123 Rab21 Rab21 subfamily. 99.4 8.2E-12 1.8E-16 107.0 13.0 108 240-358 2-112 (162)
85 cd00881 GTP_translation_factor 99.4 7.8E-12 1.7E-16 110.1 12.7 104 240-357 1-120 (189)
86 cd04110 Rab35 Rab35 subfamily. 99.4 9.7E-12 2.1E-16 112.2 13.4 110 237-357 5-116 (199)
87 cd04109 Rab28 Rab28 subfamily. 99.4 1E-11 2.2E-16 113.4 13.5 107 240-357 2-115 (215)
88 cd04149 Arf6 Arf6 subfamily. 99.4 1.2E-11 2.5E-16 108.7 13.1 108 237-358 8-117 (168)
89 cd04161 Arl2l1_Arl13_like Arl2 99.4 1.4E-11 3E-16 108.0 13.3 104 240-357 1-106 (167)
90 PRK00454 engB GTP-binding prot 99.3 2E-11 4.4E-16 108.8 14.6 113 237-357 23-141 (196)
91 smart00178 SAR Sar1p-like memb 99.3 1.3E-11 2.8E-16 110.0 13.1 107 237-357 16-124 (184)
92 cd04136 Rap_like Rap-like subf 99.3 1E-11 2.2E-16 107.0 11.8 107 239-357 2-112 (163)
93 cd01860 Rab5_related Rab5-rela 99.3 2E-11 4.3E-16 105.3 13.6 108 239-357 2-112 (163)
94 cd04122 Rab14 Rab14 subfamily. 99.3 2E-11 4.4E-16 106.2 13.6 107 239-357 3-113 (166)
95 cd04138 H_N_K_Ras_like H-Ras/N 99.3 1.6E-11 3.6E-16 105.1 12.7 107 239-357 2-112 (162)
96 cd04112 Rab26 Rab26 subfamily. 99.3 1.7E-11 3.7E-16 109.8 13.2 107 240-357 2-112 (191)
97 cd04118 Rab24 Rab24 subfamily. 99.3 1.5E-11 3.2E-16 109.9 12.7 107 240-357 2-111 (193)
98 cd04114 Rab30 Rab30 subfamily. 99.3 2.2E-11 4.7E-16 105.8 13.5 109 238-357 7-118 (169)
99 cd04158 ARD1 ARD1 subfamily. 99.3 1.4E-11 3E-16 108.0 12.2 104 240-357 1-106 (169)
100 cd04115 Rab33B_Rab33A Rab33B/R 99.3 2.5E-11 5.5E-16 106.2 13.9 110 238-357 2-115 (170)
101 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 1.5E-11 3.2E-16 107.6 12.1 104 241-357 2-105 (164)
102 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 1.6E-11 3.6E-16 110.7 12.7 107 240-357 2-116 (201)
103 cd04127 Rab27A Rab27a subfamil 99.3 2.2E-11 4.7E-16 107.2 13.2 109 238-357 4-126 (180)
104 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 2.2E-11 4.8E-16 107.3 13.2 106 238-357 15-122 (174)
105 cd04144 Ras2 Ras2 subfamily. 99.3 1.5E-11 3.2E-16 110.0 12.0 106 240-357 1-112 (190)
106 cd04154 Arl2 Arl2 subfamily. 99.3 2.4E-11 5.3E-16 106.6 13.2 107 237-357 13-121 (173)
107 cd01863 Rab18 Rab18 subfamily. 99.3 2.3E-11 5E-16 104.8 12.8 107 240-357 2-112 (161)
108 cd04159 Arl10_like Arl10-like 99.3 1.6E-11 3.5E-16 104.2 11.3 104 241-357 2-107 (159)
109 cd04125 RabA_like RabA-like su 99.3 2.9E-11 6.4E-16 107.6 13.4 107 240-357 2-111 (188)
110 cd04175 Rap1 Rap1 subgroup. T 99.3 2.4E-11 5.2E-16 105.3 12.5 107 239-357 2-112 (164)
111 PF06858 NOG1: Nucleolar GTP-b 99.3 3.4E-12 7.3E-17 91.5 5.7 54 305-358 1-54 (58)
112 cd00876 Ras Ras family. The R 99.3 2.1E-11 4.7E-16 104.2 12.0 106 240-357 1-110 (160)
113 cd00880 Era_like Era (E. coli 99.3 3E-11 6.4E-16 101.7 12.4 109 243-358 1-111 (163)
114 cd00879 Sar1 Sar1 subfamily. 99.3 3.4E-11 7.3E-16 107.1 13.2 108 237-358 18-127 (190)
115 cd04151 Arl1 Arl1 subfamily. 99.3 2.4E-11 5.2E-16 104.9 11.9 104 240-357 1-106 (158)
116 TIGR00437 feoB ferrous iron tr 99.3 1.7E-11 3.8E-16 127.9 12.9 104 245-357 1-105 (591)
117 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 4.1E-11 8.8E-16 105.4 13.4 107 240-357 2-112 (170)
118 cd00878 Arf_Arl Arf (ADP-ribos 99.3 2.9E-11 6.3E-16 104.0 12.2 105 240-358 1-107 (158)
119 cd04176 Rap2 Rap2 subgroup. T 99.3 2.5E-11 5.3E-16 105.0 11.8 107 239-357 2-112 (163)
120 TIGR00993 3a0901s04IAP86 chlor 99.3 1.1E-10 2.3E-15 120.6 18.2 118 238-358 118-243 (763)
121 cd04117 Rab15 Rab15 subfamily. 99.3 4.7E-11 1E-15 103.8 13.5 107 240-357 2-111 (161)
122 cd01889 SelB_euk SelB subfamil 99.3 2.4E-11 5.2E-16 108.9 12.0 83 240-331 2-105 (192)
123 cd04146 RERG_RasL11_like RERG/ 99.3 1.8E-11 3.9E-16 106.3 10.8 109 240-357 1-112 (165)
124 cd04116 Rab9 Rab9 subfamily. 99.3 4.5E-11 9.7E-16 104.2 13.3 110 237-357 4-120 (170)
125 TIGR00231 small_GTP small GTP- 99.3 4.1E-11 8.8E-16 100.9 12.6 83 239-330 2-86 (161)
126 COG3596 Predicted GTPase [Gene 99.3 1.1E-11 2.3E-16 115.6 9.5 117 236-357 37-154 (296)
127 cd04150 Arf1_5_like Arf1-Arf5- 99.3 3.7E-11 7.9E-16 104.4 12.4 104 240-357 2-107 (159)
128 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 3.6E-11 7.7E-16 107.0 12.6 109 238-358 3-116 (183)
129 cd04121 Rab40 Rab40 subfamily. 99.3 5.8E-11 1.3E-15 106.8 13.8 109 238-357 6-116 (189)
130 cd01891 TypA_BipA TypA (tyrosi 99.3 3.8E-11 8.2E-16 107.7 12.6 105 239-357 3-123 (194)
131 COG1161 Predicted GTPases [Gen 99.3 3.1E-12 6.6E-17 124.2 5.8 127 166-302 65-194 (322)
132 cd04120 Rab12 Rab12 subfamily. 99.3 4.8E-11 1.1E-15 108.4 13.2 107 240-357 2-111 (202)
133 cd04101 RabL4 RabL4 (Rab-like4 99.3 6.5E-11 1.4E-15 102.3 13.5 107 240-357 2-113 (164)
134 smart00174 RHO Rho (Ras homolo 99.3 2.5E-11 5.4E-16 106.1 10.8 105 241-357 1-108 (174)
135 smart00173 RAS Ras subfamily o 99.3 4E-11 8.7E-16 103.6 11.9 106 240-357 2-111 (164)
136 cd04140 ARHI_like ARHI subfami 99.3 4.3E-11 9.3E-16 104.2 12.0 109 239-357 2-114 (165)
137 PLN03071 GTP-binding nuclear p 99.3 4.8E-11 1E-15 109.6 12.9 111 236-357 11-123 (219)
138 cd04178 Nucleostemin_like Nucl 99.3 9.5E-12 2.1E-16 110.3 7.9 56 237-295 116-172 (172)
139 cd04166 CysN_ATPS CysN_ATPS su 99.3 2.3E-11 5E-16 110.8 10.7 83 240-331 1-114 (208)
140 cd00877 Ran Ran (Ras-related n 99.3 4.1E-11 8.8E-16 104.9 11.8 105 240-357 2-110 (166)
141 smart00177 ARF ARF-like small 99.3 6.6E-11 1.4E-15 104.5 13.1 106 238-357 13-120 (175)
142 PTZ00369 Ras-like protein; Pro 99.3 5.3E-11 1.1E-15 106.4 12.5 109 237-357 4-116 (189)
143 PLN03110 Rab GTPase; Provision 99.3 8.7E-11 1.9E-15 107.6 14.2 109 238-357 12-123 (216)
144 PLN00223 ADP-ribosylation fact 99.3 7.8E-11 1.7E-15 104.9 13.5 107 237-357 16-124 (181)
145 cd01874 Cdc42 Cdc42 subfamily. 99.3 5.1E-11 1.1E-15 105.4 12.2 107 239-357 2-111 (175)
146 PF08477 Miro: Miro-like prote 99.3 9.8E-12 2.1E-16 102.1 7.0 109 240-357 1-114 (119)
147 cd01890 LepA LepA subfamily. 99.3 6.1E-11 1.3E-15 104.1 12.2 104 240-357 2-125 (179)
148 cd04132 Rho4_like Rho4-like su 99.3 7.7E-11 1.7E-15 104.5 12.8 106 240-357 2-111 (187)
149 PTZ00133 ADP-ribosylation fact 99.3 7.8E-11 1.7E-15 104.9 12.7 106 238-357 17-124 (182)
150 cd04139 RalA_RalB RalA/RalB su 99.3 7.9E-11 1.7E-15 101.2 12.2 108 240-358 2-112 (164)
151 cd04111 Rab39 Rab39 subfamily. 99.2 8.5E-11 1.9E-15 107.3 12.7 108 239-357 3-115 (211)
152 cd04147 Ras_dva Ras-dva subfam 99.2 6.6E-11 1.4E-15 106.6 11.6 106 240-357 1-110 (198)
153 KOG1491|consensus 99.2 3.4E-11 7.5E-16 114.7 10.0 91 237-329 19-126 (391)
154 cd00157 Rho Rho (Ras homology) 99.2 5.3E-11 1.1E-15 103.4 10.5 108 240-358 2-111 (171)
155 cd04156 ARLTS1 ARLTS1 subfamil 99.2 9.6E-11 2.1E-15 100.8 12.0 105 240-358 1-108 (160)
156 TIGR00092 GTP-binding protein 99.2 5.1E-11 1.1E-15 116.8 11.3 89 239-329 3-109 (368)
157 KOG1486|consensus 99.2 9.1E-12 2E-16 114.3 5.3 94 236-331 60-153 (364)
158 cd04131 Rnd Rnd subfamily. Th 99.2 1.4E-10 2.9E-15 103.2 12.7 107 239-357 2-111 (178)
159 PRK09563 rbgA GTPase YlqF; Rev 99.2 1.8E-11 3.9E-16 117.1 7.3 65 236-303 119-184 (287)
160 KOG0084|consensus 99.2 1.1E-10 2.3E-15 103.7 11.6 110 237-357 8-120 (205)
161 cd04177 RSR1 RSR1 subgroup. R 99.2 1.1E-10 2.4E-15 101.9 11.7 107 239-357 2-112 (168)
162 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.2 2.1E-10 4.5E-15 101.1 13.5 108 239-357 3-113 (172)
163 PLN03108 Rab family protein; P 99.2 1.9E-10 4E-15 104.9 13.5 109 238-357 6-117 (210)
164 cd04137 RheB Rheb (Ras Homolog 99.2 1.7E-10 3.6E-15 101.6 12.7 107 239-357 2-112 (180)
165 cd01886 EF-G Elongation factor 99.2 1.5E-10 3.3E-15 109.8 12.8 104 240-357 1-122 (270)
166 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.2 2.2E-10 4.7E-15 102.4 13.0 109 237-357 4-115 (182)
167 cd04155 Arl3 Arl3 subfamily. 99.2 1.8E-10 4E-15 100.5 12.1 107 237-357 13-121 (173)
168 cd01893 Miro1 Miro1 subfamily. 99.2 1.6E-10 3.4E-15 100.8 11.6 105 240-357 2-109 (166)
169 cd01892 Miro2 Miro2 subfamily. 99.2 1.4E-10 3E-15 101.9 11.3 109 237-357 3-114 (169)
170 cd01876 YihA_EngB The YihA (En 99.2 1.8E-10 3.8E-15 98.7 11.6 109 241-357 2-116 (170)
171 cd04143 Rhes_like Rhes_like su 99.2 1.8E-10 4E-15 107.9 12.4 106 240-357 2-119 (247)
172 PLN03118 Rab family protein; P 99.2 1.7E-10 3.7E-15 105.0 11.8 84 238-331 14-99 (211)
173 cd04102 RabL3 RabL3 (Rab-like3 99.2 3E-10 6.5E-15 103.3 13.3 96 240-346 2-104 (202)
174 cd01884 EF_Tu EF-Tu subfamily. 99.2 1.9E-10 4E-15 104.1 11.6 95 239-342 3-113 (195)
175 cd04130 Wrch_1 Wrch-1 subfamil 99.2 1.7E-10 3.7E-15 101.3 10.9 106 240-357 2-110 (173)
176 cd01871 Rac1_like Rac1-like su 99.2 3.1E-10 6.8E-15 100.3 12.3 107 239-357 2-111 (174)
177 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.2 4.3E-10 9.4E-15 104.4 13.6 108 238-357 13-123 (232)
178 TIGR03596 GTPase_YlqF ribosome 99.2 4.4E-11 9.5E-16 113.8 7.0 64 236-302 116-180 (276)
179 TIGR00487 IF-2 translation ini 99.2 2.8E-10 6.1E-15 118.5 13.6 109 235-357 84-193 (587)
180 cd04169 RF3 RF3 subfamily. Pe 99.2 5.3E-10 1.1E-14 105.9 14.3 105 239-357 3-129 (267)
181 cd04170 EF-G_bact Elongation f 99.2 3.1E-10 6.6E-15 107.3 12.6 104 240-357 1-122 (268)
182 cd04148 RGK RGK subfamily. Th 99.2 3.6E-10 7.8E-15 103.9 12.5 106 240-357 2-112 (221)
183 cd01870 RhoA_like RhoA-like su 99.2 2.5E-10 5.5E-15 99.8 11.0 107 239-357 2-111 (175)
184 cd04135 Tc10 TC10 subfamily. 99.2 1.5E-10 3.3E-15 101.1 9.4 107 240-357 2-110 (174)
185 cd04128 Spg1 Spg1p. Spg1p (se 99.2 5E-10 1.1E-14 99.8 12.9 97 240-347 2-100 (182)
186 cd01858 NGP_1 NGP-1. Autoanti 99.1 6.8E-11 1.5E-15 102.7 6.9 56 237-295 101-157 (157)
187 PRK05306 infB translation init 99.1 3.3E-10 7E-15 121.1 13.3 109 235-357 287-395 (787)
188 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.1 4.9E-10 1.1E-14 103.3 12.8 107 239-357 2-111 (222)
189 PF00071 Ras: Ras family; Int 99.1 3.5E-10 7.5E-15 97.5 10.9 107 240-357 1-110 (162)
190 cd01875 RhoG RhoG subfamily. 99.1 6.5E-10 1.4E-14 99.7 12.9 108 238-357 3-113 (191)
191 cd04134 Rho3 Rho3 subfamily. 99.1 3.7E-10 8E-15 101.0 10.9 107 240-357 2-110 (189)
192 cd04126 Rab20 Rab20 subfamily. 99.1 5E-10 1.1E-14 103.2 12.0 104 240-357 2-106 (220)
193 cd04168 TetM_like Tet(M)-like 99.1 5.3E-10 1.2E-14 104.1 12.3 104 240-357 1-122 (237)
194 cd04105 SR_beta Signal recogni 99.1 8.2E-10 1.8E-14 100.3 13.2 107 239-357 1-115 (203)
195 PF00350 Dynamin_N: Dynamin fa 99.1 5E-10 1.1E-14 97.6 11.0 87 241-332 1-143 (168)
196 smart00053 DYNc Dynamin, GTPas 99.1 1.9E-09 4.1E-14 100.4 15.4 118 237-358 25-199 (240)
197 CHL00189 infB translation init 99.1 6.4E-10 1.4E-14 118.0 13.6 108 236-357 242-353 (742)
198 cd04133 Rop_like Rop subfamily 99.1 5.2E-10 1.1E-14 99.4 10.9 107 239-357 2-111 (176)
199 cd01850 CDC_Septin CDC/Septin. 99.1 2E-09 4.3E-14 102.5 15.1 115 238-357 4-149 (276)
200 PF00009 GTP_EFTU: Elongation 99.1 4.2E-10 9.2E-15 100.6 9.3 106 238-357 3-128 (188)
201 PRK15467 ethanolamine utilizat 99.1 8.6E-10 1.9E-14 96.1 11.0 77 240-332 3-79 (158)
202 TIGR00491 aIF-2 translation in 99.1 9.9E-10 2.1E-14 114.4 13.3 107 237-357 3-127 (590)
203 cd01855 YqeH YqeH. YqeH is an 99.1 2.5E-10 5.3E-15 102.3 7.5 55 238-295 127-190 (190)
204 smart00176 RAN Ran (Ras-relate 99.1 1.4E-09 3E-14 98.7 12.3 103 244-357 1-105 (200)
205 TIGR00475 selB selenocysteine- 99.1 1.1E-09 2.4E-14 114.4 13.2 104 240-357 2-109 (581)
206 TIGR02528 EutP ethanolamine ut 99.1 7.9E-10 1.7E-14 93.5 10.0 77 240-333 2-78 (142)
207 cd00882 Ras_like_GTPase Ras-li 99.1 8.3E-10 1.8E-14 91.5 9.8 106 243-357 1-108 (157)
208 KOG2484|consensus 99.1 6.4E-11 1.4E-15 114.9 3.3 146 150-304 165-316 (435)
209 KOG0094|consensus 99.1 1.7E-09 3.7E-14 95.9 11.9 100 238-348 22-123 (221)
210 PF00025 Arf: ADP-ribosylation 99.1 5.1E-10 1.1E-14 99.2 8.7 107 237-357 13-121 (175)
211 KOG0073|consensus 99.1 2.9E-09 6.2E-14 92.0 12.9 105 238-357 16-123 (185)
212 PLN00023 GTP-binding protein; 99.1 1.8E-09 4E-14 104.2 12.6 100 237-347 20-134 (334)
213 PRK12317 elongation factor 1-a 99.1 1.1E-09 2.4E-14 110.3 11.5 84 237-329 5-119 (425)
214 cd01849 YlqF_related_GTPase Yl 99.0 3.9E-10 8.4E-15 97.9 7.1 56 237-295 99-155 (155)
215 CHL00071 tufA elongation facto 99.0 1.8E-09 3.9E-14 108.3 12.7 87 237-332 11-113 (409)
216 cd04104 p47_IIGP_like p47 (47- 99.0 1.2E-09 2.6E-14 98.6 10.1 107 239-358 2-114 (197)
217 PTZ00132 GTP-binding nuclear p 99.0 3.8E-09 8.2E-14 96.3 13.4 108 237-357 8-119 (215)
218 cd01851 GBP Guanylate-binding 99.0 2.3E-09 4.9E-14 99.1 11.6 92 236-329 5-103 (224)
219 PRK09866 hypothetical protein; 99.0 4.6E-09 1E-13 108.4 14.7 36 238-273 69-105 (741)
220 KOG2423|consensus 99.0 8.8E-11 1.9E-15 113.7 1.9 159 124-300 199-367 (572)
221 cd01883 EF1_alpha Eukaryotic e 99.0 3.6E-09 7.8E-14 97.1 12.3 82 240-330 1-113 (219)
222 KOG0078|consensus 99.0 5.4E-09 1.2E-13 93.9 12.9 110 237-357 11-123 (207)
223 cd04103 Centaurin_gamma Centau 99.0 4.6E-09 9.9E-14 91.5 12.1 100 240-357 2-105 (158)
224 KOG0087|consensus 99.0 1.9E-09 4.2E-14 96.6 9.8 110 237-357 13-125 (222)
225 KOG0092|consensus 99.0 1.5E-09 3.2E-14 96.1 8.9 102 237-349 4-107 (200)
226 COG0552 FtsY Signal recognitio 99.0 3.1E-09 6.8E-14 101.9 11.8 208 119-347 39-285 (340)
227 TIGR00484 EF-G translation elo 99.0 3E-09 6.5E-14 113.3 12.8 107 237-357 9-133 (689)
228 KOG0079|consensus 99.0 2.3E-09 5E-14 91.1 9.5 107 240-357 10-118 (198)
229 PRK12735 elongation factor Tu; 99.0 3.7E-09 8.1E-14 105.6 12.4 106 237-356 11-132 (396)
230 KOG0095|consensus 99.0 7E-09 1.5E-13 88.3 11.7 99 238-347 7-107 (213)
231 PRK04004 translation initiatio 99.0 5.4E-09 1.2E-13 109.1 13.5 109 235-357 3-129 (586)
232 cd04167 Snu114p Snu114p subfam 99.0 4.7E-09 1E-13 95.8 11.1 104 240-357 2-129 (213)
233 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.5E-09 3.2E-14 92.8 7.1 55 240-297 85-140 (141)
234 cd04129 Rho2 Rho2 subfamily. 99.0 5.4E-09 1.2E-13 93.2 11.1 106 240-357 3-111 (187)
235 PRK12739 elongation factor G; 99.0 5.8E-09 1.3E-13 111.2 13.0 107 237-357 7-131 (691)
236 PRK00007 elongation factor G; 98.9 7.6E-09 1.6E-13 110.3 13.6 106 238-357 10-133 (693)
237 PRK00049 elongation factor Tu; 98.9 5.8E-09 1.3E-13 104.2 12.0 106 237-356 11-132 (396)
238 PLN03127 Elongation factor Tu; 98.9 7.1E-09 1.5E-13 105.0 12.7 104 237-354 60-179 (447)
239 cd01856 YlqF YlqF. Proteins o 98.9 2.1E-09 4.5E-14 94.8 7.6 58 236-296 113-171 (171)
240 KOG2485|consensus 98.9 5.2E-09 1.1E-13 99.1 10.3 76 235-310 140-221 (335)
241 COG1100 GTPase SAR1 and relate 98.9 1.5E-08 3.3E-13 92.0 12.7 109 239-357 6-117 (219)
242 cd01885 EF2 EF2 (for archaea a 98.9 1E-08 2.2E-13 94.5 11.6 104 240-357 2-131 (222)
243 PRK12736 elongation factor Tu; 98.9 1.3E-08 2.8E-13 101.6 12.8 98 237-343 11-124 (394)
244 PRK00741 prfC peptide chain re 98.9 2E-08 4.2E-13 103.7 14.1 107 237-357 9-137 (526)
245 PF00735 Septin: Septin; Inte 98.9 2.2E-08 4.7E-13 95.6 12.7 116 238-355 4-149 (281)
246 KOG0098|consensus 98.9 3.1E-08 6.8E-13 87.4 12.6 105 237-355 5-115 (216)
247 TIGR03597 GTPase_YqeH ribosome 98.9 3.8E-09 8.3E-14 104.2 7.8 57 239-298 155-217 (360)
248 TIGR01394 TypA_BipA GTP-bindin 98.9 2E-08 4.3E-13 105.0 13.4 105 239-357 2-122 (594)
249 TIGR00485 EF-Tu translation el 98.9 1.7E-08 3.7E-13 100.8 12.3 97 237-342 11-123 (394)
250 cd01888 eIF2_gamma eIF2-gamma 98.9 2.7E-08 5.9E-13 90.2 12.2 82 240-330 2-119 (203)
251 PRK05506 bifunctional sulfate 98.9 1.7E-08 3.7E-13 106.6 12.4 108 237-357 23-163 (632)
252 PLN03126 Elongation factor Tu; 98.9 2.7E-08 5.8E-13 101.6 13.4 97 237-342 80-192 (478)
253 PRK10218 GTP-binding protein; 98.9 2.9E-08 6.2E-13 103.9 13.8 85 238-331 5-105 (607)
254 PRK10512 selenocysteinyl-tRNA- 98.9 2.9E-08 6.3E-13 104.2 13.8 95 240-343 2-100 (614)
255 TIGR00503 prfC peptide chain r 98.9 3.1E-08 6.7E-13 102.3 13.7 107 237-357 10-138 (527)
256 PRK13796 GTPase YqeH; Provisio 98.9 4.6E-09 1E-13 103.8 7.2 57 239-298 161-223 (365)
257 TIGR00483 EF-1_alpha translati 98.8 1.9E-08 4.1E-13 101.4 11.6 85 237-330 6-121 (426)
258 TIGR02836 spore_IV_A stage IV 98.8 1.2E-08 2.6E-13 100.7 9.8 118 237-358 16-187 (492)
259 cd01859 MJ1464 MJ1464. This f 98.8 8.3E-09 1.8E-13 89.3 7.6 56 237-295 100-156 (156)
260 KOG0080|consensus 98.8 2.9E-08 6.2E-13 85.6 10.3 97 238-345 11-109 (209)
261 PRK13351 elongation factor G; 98.8 3E-08 6.5E-13 105.8 12.7 107 237-357 7-131 (687)
262 TIGR01393 lepA GTP-binding pro 98.8 4.8E-08 1E-12 102.3 13.5 85 238-331 3-107 (595)
263 cd01873 RhoBTB RhoBTB subfamil 98.8 2.3E-08 5E-13 90.3 9.5 106 239-357 3-126 (195)
264 PF03193 DUF258: Protein of un 98.8 7E-09 1.5E-13 90.7 5.6 73 218-301 23-103 (161)
265 cd04165 GTPBP1_like GTPBP1-lik 98.8 5.2E-08 1.1E-12 90.0 11.7 105 240-357 1-144 (224)
266 PRK12289 GTPase RsgA; Reviewed 98.8 9.9E-09 2.1E-13 100.8 7.2 58 240-300 174-239 (352)
267 PRK10416 signal recognition pa 98.8 3.8E-07 8.2E-12 88.5 18.0 201 115-344 18-257 (318)
268 PF05049 IIGP: Interferon-indu 98.8 5.3E-08 1.2E-12 95.8 12.1 108 238-357 35-147 (376)
269 KOG1547|consensus 98.8 7E-08 1.5E-12 88.5 11.8 117 237-355 45-191 (336)
270 PRK05124 cysN sulfate adenylyl 98.8 9E-08 2E-12 97.8 13.7 100 237-345 26-158 (474)
271 PRK12288 GTPase RsgA; Reviewed 98.8 3.2E-08 6.8E-13 97.1 9.7 59 240-301 207-273 (347)
272 KOG0070|consensus 98.8 1.2E-08 2.6E-13 89.8 5.8 85 237-333 16-100 (181)
273 TIGR02034 CysN sulfate adenyly 98.7 6.8E-08 1.5E-12 96.9 11.7 97 240-345 2-131 (406)
274 TIGR00157 ribosome small subun 98.7 2.4E-08 5.1E-13 93.5 7.4 59 239-301 121-187 (245)
275 KOG0086|consensus 98.7 1.4E-07 3E-12 80.7 11.0 100 238-348 9-110 (214)
276 PF09439 SRPRB: Signal recogni 98.7 1.8E-08 4E-13 89.8 5.8 109 238-357 3-118 (181)
277 cd01882 BMS1 Bms1. Bms1 is an 98.7 1E-07 2.3E-12 88.0 11.0 80 236-332 37-118 (225)
278 PRK05433 GTP-binding protein L 98.7 1.5E-07 3.2E-12 98.7 13.4 85 238-331 7-111 (600)
279 TIGR03680 eif2g_arch translati 98.7 1.2E-07 2.5E-12 95.2 12.1 108 237-357 3-140 (406)
280 KOG0091|consensus 98.7 4.8E-08 1E-12 84.5 7.9 107 239-356 9-120 (213)
281 COG1162 Predicted GTPases [Gen 98.7 6.1E-08 1.3E-12 92.3 9.0 69 221-300 155-231 (301)
282 COG5019 CDC3 Septin family pro 98.7 2.4E-07 5.1E-12 89.9 12.4 117 237-355 22-169 (373)
283 KOG0394|consensus 98.7 5.2E-08 1.1E-12 85.8 6.7 85 237-333 8-97 (210)
284 KOG0093|consensus 98.6 3.9E-07 8.4E-12 77.6 11.5 109 238-357 21-132 (193)
285 TIGR00490 aEF-2 translation el 98.6 1.3E-07 2.9E-12 101.2 10.8 90 237-335 18-127 (720)
286 KOG1487|consensus 98.6 1.5E-08 3.3E-13 93.7 3.0 94 238-333 59-152 (358)
287 KOG0075|consensus 98.6 7.3E-08 1.6E-12 82.0 6.8 107 238-357 20-128 (186)
288 PTZ00141 elongation factor 1- 98.6 3.7E-07 8E-12 92.6 12.9 86 237-331 6-122 (446)
289 KOG2655|consensus 98.6 4E-07 8.7E-12 88.7 12.3 117 237-355 20-165 (366)
290 PTZ00416 elongation factor 2; 98.6 3.5E-07 7.6E-12 99.4 13.2 107 237-357 18-150 (836)
291 KOG2486|consensus 98.6 4.1E-07 8.9E-12 85.2 11.7 115 236-358 134-255 (320)
292 PF10662 PduV-EutP: Ethanolami 98.6 1.7E-07 3.7E-12 80.3 8.5 75 239-331 2-77 (143)
293 KOG0074|consensus 98.6 2.5E-07 5.5E-12 78.3 9.2 85 236-333 15-101 (185)
294 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 2.6E-07 5.7E-12 85.7 9.3 87 240-330 1-89 (232)
295 PRK12740 elongation factor G; 98.6 4.7E-07 1E-11 96.4 12.4 100 244-357 1-118 (668)
296 PRK00098 GTPase RsgA; Reviewed 98.5 1.7E-07 3.8E-12 90.1 7.3 58 239-299 165-230 (298)
297 PRK04000 translation initiatio 98.5 7E-07 1.5E-11 89.7 11.8 108 237-357 8-145 (411)
298 PLN00116 translation elongatio 98.5 1.2E-06 2.7E-11 95.3 13.6 107 237-357 18-156 (843)
299 COG2229 Predicted GTPase [Gene 98.5 2.3E-06 5E-11 75.6 11.8 108 237-357 9-127 (187)
300 PRK07560 elongation factor EF- 98.4 1.6E-06 3.4E-11 93.2 12.6 96 237-341 19-134 (731)
301 cd01854 YjeQ_engC YjeQ/EngC. 98.4 1.4E-06 2.9E-11 83.5 9.7 58 239-299 162-227 (287)
302 TIGR01425 SRP54_euk signal rec 98.4 2.3E-05 5E-10 78.8 17.8 102 238-344 100-237 (429)
303 KOG0071|consensus 98.3 4.5E-06 9.7E-11 70.7 10.1 81 238-331 17-98 (180)
304 KOG0395|consensus 98.3 2.8E-06 6E-11 76.9 9.4 108 238-357 3-114 (196)
305 PRK14974 cell division protein 98.3 3.3E-06 7.2E-11 82.5 10.1 103 237-344 139-277 (336)
306 PLN00043 elongation factor 1-a 98.3 6.4E-06 1.4E-10 83.6 11.7 85 237-330 6-121 (447)
307 KOG4252|consensus 98.2 7E-07 1.5E-11 78.4 3.4 109 238-357 20-130 (246)
308 KOG0090|consensus 98.2 5.5E-06 1.2E-10 74.9 8.4 97 238-346 38-136 (238)
309 KOG0088|consensus 98.2 1E-06 2.2E-11 75.9 3.4 101 237-351 12-117 (218)
310 KOG0076|consensus 98.2 3.7E-06 8E-11 73.6 6.7 87 238-333 17-108 (197)
311 KOG0097|consensus 98.2 2E-05 4.4E-10 66.7 10.7 97 239-348 12-112 (215)
312 KOG0077|consensus 98.1 9E-06 1.9E-10 70.7 7.6 106 238-356 20-126 (193)
313 TIGR00064 ftsY signal recognit 98.1 7.1E-05 1.5E-09 71.2 14.4 105 237-343 71-214 (272)
314 PRK13768 GTPase; Provisional 98.1 7.8E-06 1.7E-10 76.9 7.3 72 285-358 97-169 (253)
315 PRK14723 flhF flagellar biosyn 98.1 0.00024 5.1E-09 76.0 18.5 23 238-260 185-207 (767)
316 COG0480 FusA Translation elong 98.0 4.3E-05 9.4E-10 81.1 12.3 98 237-343 9-125 (697)
317 KOG0393|consensus 98.0 3.6E-06 7.9E-11 75.8 3.5 110 238-358 4-116 (198)
318 COG5192 BMS1 GTP-binding prote 98.0 1.9E-05 4.1E-10 80.2 8.8 126 195-345 27-158 (1077)
319 KOG0072|consensus 98.0 5.3E-06 1.2E-10 70.6 3.7 88 237-337 17-105 (182)
320 COG0532 InfB Translation initi 97.9 9.3E-05 2E-09 75.1 11.8 108 236-357 3-113 (509)
321 KOG3859|consensus 97.9 5.9E-05 1.3E-09 70.9 9.2 109 237-348 41-176 (406)
322 COG5256 TEF1 Translation elong 97.9 0.00014 3E-09 71.9 11.4 85 237-330 6-121 (428)
323 COG4108 PrfC Peptide chain rel 97.9 8.5E-05 1.8E-09 73.7 9.8 104 238-355 12-137 (528)
324 PTZ00327 eukaryotic translatio 97.9 0.00011 2.3E-09 74.9 10.9 26 237-262 33-58 (460)
325 PRK11889 flhF flagellar biosyn 97.8 0.00046 1E-08 68.7 14.6 23 237-259 240-262 (436)
326 TIGR00750 lao LAO/AO transport 97.8 0.00014 3E-09 70.1 10.7 53 202-260 4-56 (300)
327 KOG1532|consensus 97.8 3.8E-05 8.2E-10 72.1 6.4 25 236-260 17-41 (366)
328 PF00448 SRP54: SRP54-type pro 97.8 0.00011 2.4E-09 66.5 9.0 21 239-259 2-22 (196)
329 KOG0083|consensus 97.8 1.4E-05 3E-10 67.1 2.8 94 243-347 2-98 (192)
330 PRK01889 GTPase RsgA; Reviewed 97.8 3.1E-05 6.6E-10 76.5 5.5 69 221-299 185-261 (356)
331 KOG0448|consensus 97.8 0.0004 8.7E-09 72.2 13.5 108 237-356 108-265 (749)
332 KOG1707|consensus 97.8 0.00012 2.5E-09 74.9 9.3 108 237-357 8-121 (625)
333 KOG0081|consensus 97.8 2.4E-05 5.3E-10 67.6 3.8 95 241-346 12-117 (219)
334 PRK06995 flhF flagellar biosyn 97.8 0.0014 3.1E-08 67.0 17.2 23 238-260 256-278 (484)
335 KOG1954|consensus 97.8 0.00018 4E-09 70.0 10.1 110 237-348 57-210 (532)
336 KOG3883|consensus 97.7 0.00039 8.5E-09 59.9 10.7 87 237-331 8-98 (198)
337 PRK10867 signal recognition pa 97.7 0.00034 7.4E-09 70.7 12.2 23 237-259 99-121 (433)
338 PRK12723 flagellar biosynthesi 97.7 0.0023 4.9E-08 63.9 17.1 23 237-259 173-195 (388)
339 COG1217 TypA Predicted membran 97.7 0.00032 7E-09 70.2 10.5 107 238-357 5-127 (603)
340 PRK00771 signal recognition pa 97.6 0.00032 6.9E-09 71.0 10.5 102 237-343 94-229 (437)
341 PRK09435 membrane ATPase/prote 97.6 0.00031 6.7E-09 68.6 10.1 24 236-259 54-77 (332)
342 KOG0781|consensus 97.6 0.00025 5.4E-09 71.1 9.4 118 217-344 362-521 (587)
343 PRK12724 flagellar biosynthesi 97.6 0.0045 9.7E-08 62.2 18.2 23 238-260 223-245 (432)
344 PRK14722 flhF flagellar biosyn 97.6 0.0009 2E-08 66.4 12.6 24 237-260 136-159 (374)
345 KOG0780|consensus 97.6 0.00088 1.9E-08 65.8 12.1 105 236-345 99-239 (483)
346 KOG0462|consensus 97.6 0.00025 5.3E-09 72.2 8.3 98 237-345 59-174 (650)
347 PRK14845 translation initiatio 97.6 0.00039 8.4E-09 76.9 10.4 95 249-357 472-584 (1049)
348 PRK05703 flhF flagellar biosyn 97.5 0.0085 1.8E-07 60.6 19.2 22 238-259 221-242 (424)
349 TIGR00959 ffh signal recogniti 97.5 0.0019 4.1E-08 65.2 14.2 55 284-343 182-236 (428)
350 KOG1145|consensus 97.5 0.00073 1.6E-08 68.9 10.8 110 234-357 149-259 (683)
351 cd03112 CobW_like The function 97.5 0.00016 3.5E-09 63.0 5.3 23 239-261 1-23 (158)
352 COG1419 FlhF Flagellar GTP-bin 97.5 0.00047 1E-08 68.4 9.0 24 238-261 203-226 (407)
353 PRK14721 flhF flagellar biosyn 97.5 0.0019 4.1E-08 65.0 13.1 25 237-261 190-214 (420)
354 PRK12726 flagellar biosynthesi 97.4 0.0097 2.1E-07 59.1 17.2 23 237-259 205-227 (407)
355 PF03308 ArgK: ArgK protein; 97.4 0.00026 5.5E-09 66.4 5.6 24 236-259 27-50 (266)
356 COG1703 ArgK Putative periplas 97.4 0.00064 1.4E-08 64.8 8.3 56 202-259 17-72 (323)
357 KOG1144|consensus 97.3 0.00086 1.9E-08 70.3 9.0 108 236-357 473-598 (1064)
358 KOG3886|consensus 97.3 0.00016 3.5E-09 66.4 3.1 85 238-330 4-94 (295)
359 KOG0096|consensus 97.3 0.0004 8.6E-09 61.9 5.5 109 237-356 9-119 (216)
360 KOG0468|consensus 97.3 0.0026 5.7E-08 66.2 11.9 108 237-358 127-256 (971)
361 KOG1673|consensus 97.3 0.00042 9.1E-09 59.9 5.1 108 238-356 20-130 (205)
362 PTZ00099 rab6; Provisional 97.3 0.0021 4.6E-08 56.9 9.7 73 274-357 16-91 (176)
363 COG0541 Ffh Signal recognition 97.2 0.0072 1.6E-07 60.4 13.6 104 237-345 99-238 (451)
364 PF03029 ATP_bind_1: Conserved 97.1 0.00053 1.1E-08 64.0 4.8 17 243-259 1-17 (238)
365 COG4917 EutP Ethanolamine util 97.1 0.00055 1.2E-08 57.2 4.2 76 239-330 2-77 (148)
366 KOG0458|consensus 97.1 0.0015 3.3E-08 67.0 8.0 84 237-329 176-290 (603)
367 COG1618 Predicted nucleotide k 97.1 0.0071 1.5E-07 52.9 10.9 110 237-357 4-136 (179)
368 KOG0447|consensus 97.1 0.045 9.8E-07 56.2 17.6 91 234-325 304-456 (980)
369 PRK12727 flagellar biosynthesi 97.0 0.019 4E-07 59.4 15.1 24 237-260 349-372 (559)
370 PF02263 GBP: Guanylate-bindin 97.0 0.0025 5.3E-08 60.2 8.0 65 234-298 17-87 (260)
371 KOG2749|consensus 96.9 0.0029 6.2E-08 61.6 7.9 38 220-260 88-125 (415)
372 cd01983 Fer4_NifH The Fer4_Nif 96.9 0.0058 1.3E-07 47.0 8.4 73 241-333 2-74 (99)
373 COG0050 TufB GTPases - transla 96.9 0.0068 1.5E-07 57.8 9.8 108 237-358 11-134 (394)
374 TIGR03348 VI_IcmF type VI secr 96.9 0.0054 1.2E-07 69.5 11.0 114 239-358 112-250 (1169)
375 cd03115 SRP The signal recogni 96.8 0.015 3.2E-07 50.9 11.0 20 240-259 2-21 (173)
376 KOG0464|consensus 96.8 0.0024 5.2E-08 63.2 5.9 84 238-330 37-138 (753)
377 PRK14737 gmk guanylate kinase; 96.7 0.0016 3.5E-08 58.4 4.1 42 237-278 3-45 (186)
378 PRK10751 molybdopterin-guanine 96.7 0.0018 3.8E-08 57.5 4.0 25 237-261 5-29 (173)
379 cd03116 MobB Molybdenum is an 96.7 0.0016 3.5E-08 57.0 3.6 22 239-260 2-23 (159)
380 COG0481 LepA Membrane GTPase L 96.7 0.0047 1E-07 62.2 7.1 96 240-346 11-126 (603)
381 PRK06731 flhF flagellar biosyn 96.6 0.011 2.5E-07 56.1 9.2 24 237-260 74-97 (270)
382 cd00071 GMPK Guanosine monopho 96.6 0.0021 4.6E-08 54.6 3.6 53 241-295 2-56 (137)
383 COG2895 CysN GTPases - Sulfate 96.5 0.014 3E-07 57.0 9.1 103 238-355 6-143 (431)
384 COG0194 Gmk Guanylate kinase [ 96.5 0.0017 3.6E-08 58.0 2.4 43 238-280 4-46 (191)
385 TIGR03263 guanyl_kin guanylate 96.5 0.0021 4.6E-08 56.5 3.0 54 239-294 2-56 (180)
386 COG5257 GCD11 Translation init 96.4 0.012 2.6E-07 56.8 7.7 24 237-260 9-32 (415)
387 COG3276 SelB Selenocysteine-sp 96.3 0.025 5.4E-07 56.6 10.0 97 240-345 2-101 (447)
388 PF05621 TniB: Bacterial TniB 96.3 0.07 1.5E-06 51.3 12.7 108 236-357 59-186 (302)
389 PRK14738 gmk guanylate kinase; 96.3 0.004 8.6E-08 56.6 3.8 38 237-274 12-50 (206)
390 PRK00300 gmk guanylate kinase; 96.3 0.0046 1E-07 55.6 4.2 26 237-262 4-29 (205)
391 PF13207 AAA_17: AAA domain; P 96.3 0.0036 7.8E-08 51.2 3.1 22 240-261 1-22 (121)
392 cd02042 ParA ParA and ParB of 96.2 0.022 4.8E-07 45.4 7.5 72 241-330 2-74 (104)
393 PF05729 NACHT: NACHT domain 96.1 0.021 4.5E-07 48.7 7.3 21 240-260 2-22 (166)
394 PF00005 ABC_tran: ABC transpo 96.1 0.0051 1.1E-07 51.4 3.2 25 238-262 11-35 (137)
395 PF00004 AAA: ATPase family as 96.0 0.032 7E-07 45.7 7.8 21 241-261 1-21 (132)
396 COG1116 TauB ABC-type nitrate/ 96.0 0.0049 1.1E-07 57.4 3.0 24 239-262 30-53 (248)
397 PRK09270 nucleoside triphospha 95.9 0.0082 1.8E-07 55.4 4.2 25 236-260 31-55 (229)
398 cd00066 G-alpha G protein alph 95.9 0.027 6E-07 54.7 8.0 78 272-358 148-235 (317)
399 cd03111 CpaE_like This protein 95.9 0.029 6.3E-07 45.4 7.0 78 244-345 6-92 (106)
400 smart00275 G_alpha G protein a 95.9 0.039 8.4E-07 54.3 9.0 79 271-358 170-258 (342)
401 PF05879 RHD3: Root hair defec 95.9 0.0069 1.5E-07 65.4 3.8 77 244-322 1-85 (742)
402 COG0466 Lon ATP-dependent Lon 95.8 0.058 1.2E-06 57.1 10.2 24 237-260 349-372 (782)
403 cd02038 FleN-like FleN is a me 95.8 0.047 1E-06 46.3 8.0 70 242-330 4-79 (139)
404 COG1134 TagH ABC-type polysacc 95.8 0.016 3.4E-07 53.9 5.3 25 238-262 53-77 (249)
405 KOG0465|consensus 95.8 0.013 2.9E-07 60.5 5.1 85 238-331 39-141 (721)
406 PF13555 AAA_29: P-loop contai 95.8 0.012 2.5E-07 43.3 3.4 21 239-259 24-44 (62)
407 TIGR00073 hypB hydrogenase acc 95.7 0.0085 1.8E-07 54.4 3.3 24 237-260 21-44 (207)
408 KOG0461|consensus 95.7 0.12 2.7E-06 50.4 10.9 86 237-331 6-107 (522)
409 PRK13900 type IV secretion sys 95.6 0.039 8.4E-07 54.1 7.8 24 238-261 160-183 (332)
410 PF13191 AAA_16: AAA ATPase do 95.6 0.014 2.9E-07 51.0 4.1 37 221-259 9-45 (185)
411 PF13671 AAA_33: AAA domain; P 95.6 0.01 2.3E-07 49.8 3.1 21 240-260 1-21 (143)
412 TIGR00235 udk uridine kinase. 95.6 0.01 2.2E-07 53.8 3.2 25 236-260 4-28 (207)
413 PF03205 MobB: Molybdopterin g 95.5 0.0097 2.1E-07 50.9 2.8 22 239-260 1-22 (140)
414 cd00009 AAA The AAA+ (ATPases 95.5 0.12 2.5E-06 42.3 9.2 24 238-261 19-42 (151)
415 cd02019 NK Nucleoside/nucleoti 95.5 0.012 2.5E-07 43.9 2.8 22 240-261 1-22 (69)
416 cd01130 VirB11-like_ATPase Typ 95.5 0.02 4.3E-07 51.1 4.7 25 238-262 25-49 (186)
417 KOG3887|consensus 95.5 0.013 2.8E-07 54.4 3.5 86 238-329 27-113 (347)
418 COG3840 ThiQ ABC-type thiamine 95.5 0.012 2.7E-07 52.7 3.2 24 238-261 25-48 (231)
419 PRK05480 uridine/cytidine kina 95.5 0.013 2.8E-07 53.1 3.4 25 236-260 4-28 (209)
420 COG1136 SalX ABC-type antimicr 95.5 0.011 2.4E-07 54.7 3.0 24 239-262 32-55 (226)
421 cd03222 ABC_RNaseL_inhibitor T 95.4 0.013 2.8E-07 52.2 3.3 25 238-262 25-49 (177)
422 KOG4181|consensus 95.4 0.05 1.1E-06 53.1 7.4 25 237-261 187-211 (491)
423 cd03225 ABC_cobalt_CbiO_domain 95.4 0.014 3E-07 52.8 3.6 25 238-262 27-51 (211)
424 PRK07261 topology modulation p 95.4 0.013 2.7E-07 51.8 3.1 22 240-261 2-23 (171)
425 KOG0057|consensus 95.4 0.5 1.1E-05 48.8 14.8 69 111-179 200-271 (591)
426 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.4 0.015 3.2E-07 52.9 3.6 25 238-262 30-54 (218)
427 PF13238 AAA_18: AAA domain; P 95.4 0.013 2.8E-07 47.9 2.9 21 241-261 1-21 (129)
428 TIGR00960 3a0501s02 Type II (G 95.4 0.015 3.2E-07 52.9 3.6 25 238-262 29-53 (216)
429 cd03261 ABC_Org_Solvent_Resist 95.4 0.015 3.2E-07 53.6 3.6 25 238-262 26-50 (235)
430 COG0488 Uup ATPase components 95.4 0.018 4E-07 59.7 4.5 26 238-263 29-54 (530)
431 cd03264 ABC_drug_resistance_li 95.3 0.015 3.2E-07 52.6 3.3 23 240-262 27-49 (211)
432 TIGR03608 L_ocin_972_ABC putat 95.3 0.015 3.2E-07 52.3 3.2 25 238-262 24-48 (206)
433 TIGR01166 cbiO cobalt transpor 95.3 0.017 3.7E-07 51.4 3.6 25 238-262 18-42 (190)
434 TIGR02673 FtsE cell division A 95.3 0.017 3.7E-07 52.3 3.5 25 238-262 28-52 (214)
435 cd03265 ABC_DrrA DrrA is the A 95.2 0.017 3.8E-07 52.6 3.6 25 238-262 26-50 (220)
436 cd03262 ABC_HisP_GlnQ_permease 95.2 0.018 3.9E-07 52.1 3.6 25 238-262 26-50 (213)
437 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.019 4.1E-07 49.1 3.5 25 238-262 26-50 (144)
438 TIGR01360 aden_kin_iso1 adenyl 95.2 0.017 3.7E-07 50.8 3.3 22 238-259 3-24 (188)
439 smart00382 AAA ATPases associa 95.2 0.019 4.2E-07 46.4 3.4 24 239-262 3-26 (148)
440 cd03226 ABC_cobalt_CbiO_domain 95.2 0.018 3.9E-07 51.9 3.5 25 238-262 26-50 (205)
441 PRK10078 ribose 1,5-bisphospho 95.2 0.016 3.5E-07 51.5 3.1 22 240-261 4-25 (186)
442 TIGR02322 phosphon_PhnN phosph 95.2 0.016 3.5E-07 50.9 3.1 22 240-261 3-24 (179)
443 KOG2203|consensus 95.2 0.03 6.6E-07 57.4 5.3 78 231-309 30-112 (772)
444 cd03260 ABC_PstB_phosphate_tra 95.2 0.018 3.9E-07 52.7 3.5 25 238-262 26-50 (227)
445 COG1341 Predicted GTPase or GT 95.2 0.12 2.5E-06 51.5 9.2 24 237-260 72-95 (398)
446 TIGR02211 LolD_lipo_ex lipopro 95.2 0.019 4.1E-07 52.3 3.6 25 238-262 31-55 (221)
447 cd03269 ABC_putative_ATPase Th 95.2 0.019 4.2E-07 51.9 3.6 25 238-262 26-50 (210)
448 cd03259 ABC_Carb_Solutes_like 95.1 0.019 4.2E-07 52.0 3.6 25 238-262 26-50 (213)
449 PRK13541 cytochrome c biogenes 95.1 0.02 4.3E-07 51.3 3.5 25 238-262 26-50 (195)
450 cd03292 ABC_FtsE_transporter F 95.1 0.02 4.3E-07 51.8 3.5 25 238-262 27-51 (214)
451 PLN02772 guanylate kinase 95.1 0.026 5.6E-07 56.3 4.6 43 237-279 134-178 (398)
452 KOG1533|consensus 95.1 0.03 6.6E-07 51.9 4.7 20 240-259 4-23 (290)
453 cd03293 ABC_NrtD_SsuB_transpor 95.1 0.019 4.1E-07 52.4 3.4 25 238-262 30-54 (220)
454 PRK15177 Vi polysaccharide exp 95.1 0.02 4.3E-07 52.3 3.5 25 238-262 13-37 (213)
455 PRK08118 topology modulation p 95.1 0.018 3.9E-07 50.6 3.1 23 239-261 2-24 (167)
456 COG1120 FepC ABC-type cobalami 95.1 0.02 4.3E-07 54.0 3.5 23 238-260 28-50 (258)
457 PRK08233 hypothetical protein; 95.1 0.019 4E-07 50.3 3.2 24 238-261 3-26 (182)
458 TIGR02315 ABC_phnC phosphonate 95.1 0.02 4.4E-07 52.9 3.6 25 238-262 28-52 (243)
459 cd03263 ABC_subfamily_A The AB 95.1 0.021 4.5E-07 52.0 3.6 25 238-262 28-52 (220)
460 cd03258 ABC_MetN_methionine_tr 95.1 0.021 4.5E-07 52.5 3.6 25 238-262 31-55 (233)
461 COG1763 MobB Molybdopterin-gua 95.1 0.02 4.4E-07 50.2 3.3 21 239-259 3-23 (161)
462 cd03257 ABC_NikE_OppD_transpor 95.0 0.021 4.5E-07 52.1 3.5 25 238-262 31-55 (228)
463 cd03224 ABC_TM1139_LivF_branch 95.0 0.021 4.5E-07 52.0 3.5 25 238-262 26-50 (222)
464 smart00763 AAA_PrkA PrkA AAA d 95.0 0.078 1.7E-06 52.4 7.6 24 237-260 77-100 (361)
465 cd03235 ABC_Metallic_Cations A 95.0 0.021 4.6E-07 51.7 3.4 25 238-262 25-49 (213)
466 cd03216 ABC_Carb_Monos_I This 95.0 0.023 4.9E-07 49.6 3.5 25 238-262 26-50 (163)
467 cd03218 ABC_YhbG The ABC trans 95.0 0.022 4.8E-07 52.3 3.6 25 238-262 26-50 (232)
468 cd03229 ABC_Class3 This class 95.0 0.023 5.1E-07 50.1 3.6 25 238-262 26-50 (178)
469 TIGR03499 FlhF flagellar biosy 95.0 0.12 2.5E-06 49.4 8.6 24 237-260 193-216 (282)
470 COG1101 PhnK ABC-type uncharac 95.0 0.022 4.8E-07 52.3 3.4 23 240-262 34-56 (263)
471 PRK10463 hydrogenase nickel in 95.0 0.046 1E-06 52.4 5.8 24 237-260 103-126 (290)
472 COG0410 LivF ABC-type branched 95.0 0.023 4.9E-07 52.5 3.5 26 237-262 28-53 (237)
473 cd03301 ABC_MalK_N The N-termi 95.0 0.023 5.1E-07 51.4 3.6 25 238-262 26-50 (213)
474 cd03268 ABC_BcrA_bacitracin_re 95.0 0.024 5.1E-07 51.2 3.6 25 238-262 26-50 (208)
475 TIGR01189 ccmA heme ABC export 95.0 0.024 5.2E-07 50.8 3.6 25 238-262 26-50 (198)
476 PRK11629 lolD lipoprotein tran 94.9 0.023 5.1E-07 52.3 3.5 25 238-262 35-59 (233)
477 PRK10584 putative ABC transpor 94.9 0.024 5.2E-07 51.9 3.6 25 238-262 36-60 (228)
478 PRK14242 phosphate transporter 94.9 0.022 4.8E-07 53.1 3.4 24 238-261 32-55 (253)
479 cd03110 Fer4_NifH_child This p 94.9 0.18 3.8E-06 44.2 9.0 50 283-343 91-140 (179)
480 PRK13540 cytochrome c biogenes 94.9 0.025 5.4E-07 50.8 3.6 26 237-262 26-51 (200)
481 cd03215 ABC_Carb_Monos_II This 94.9 0.025 5.3E-07 50.2 3.5 25 238-262 26-50 (182)
482 cd03256 ABC_PhnC_transporter A 94.9 0.024 5.2E-07 52.2 3.6 25 238-262 27-51 (241)
483 PRK11248 tauB taurine transpor 94.9 0.024 5.2E-07 53.2 3.6 25 238-262 27-51 (255)
484 cd03266 ABC_NatA_sodium_export 94.9 0.025 5.3E-07 51.4 3.6 25 238-262 31-55 (218)
485 cd03231 ABC_CcmA_heme_exporter 94.9 0.025 5.4E-07 51.0 3.5 25 238-262 26-50 (201)
486 PRK13539 cytochrome c biogenes 94.9 0.025 5.5E-07 51.2 3.6 25 238-262 28-52 (207)
487 smart00072 GuKc Guanylate kina 94.9 0.022 4.8E-07 50.6 3.1 40 239-278 3-44 (184)
488 TIGR01978 sufC FeS assembly AT 94.9 0.024 5.3E-07 52.3 3.5 24 238-261 26-49 (243)
489 cd03296 ABC_CysA_sulfate_impor 94.9 0.025 5.4E-07 52.3 3.6 25 238-262 28-52 (239)
490 TIGR00554 panK_bact pantothena 94.9 0.086 1.9E-06 50.7 7.3 24 237-260 61-84 (290)
491 PRK10908 cell division protein 94.9 0.026 5.6E-07 51.5 3.6 26 237-262 27-52 (222)
492 cd02023 UMPK Uridine monophosp 94.9 0.019 4E-07 51.5 2.6 21 241-261 2-22 (198)
493 TIGR02770 nickel_nikD nickel i 94.9 0.025 5.4E-07 52.0 3.5 25 238-262 12-36 (230)
494 cd03233 ABC_PDR_domain1 The pl 94.9 0.025 5.3E-07 51.1 3.4 25 238-262 33-57 (202)
495 PF00625 Guanylate_kin: Guanyl 94.8 0.015 3.2E-07 51.7 1.8 37 239-275 3-41 (183)
496 PRK11264 putative amino-acid A 94.8 0.026 5.6E-07 52.5 3.6 25 238-262 29-53 (250)
497 cd01131 PilT Pilus retraction 94.8 0.086 1.9E-06 47.5 6.9 22 240-261 3-24 (198)
498 PRK11124 artP arginine transpo 94.8 0.026 5.7E-07 52.2 3.6 25 238-262 28-52 (242)
499 cd03219 ABC_Mj1267_LivG_branch 94.8 0.025 5.4E-07 52.0 3.4 25 238-262 26-50 (236)
500 cd03254 ABCC_Glucan_exporter_l 94.8 0.026 5.7E-07 51.6 3.6 25 238-262 29-53 (229)
No 1
>COG1084 Predicted GTPase [General function prediction only]
Probab=100.00 E-value=2.3e-70 Score=514.14 Aligned_cols=285 Identities=44% Similarity=0.766 Sum_probs=278.9
Q ss_pred cccccccccCCChHHHHHHHhccccccCCccccc-hhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhhCCCCCCCchhHHH
Q psy15712 73 MYNFKKIAVVPTAKEFVDIMLSKTQRKTPTVIHK-QYKISRIRSFYMRKIKYTQSNFHERLSQIIQEFPKLDNIHPFYAD 151 (358)
Q Consensus 73 ~~~f~~ip~v~ta~elid~~l~ra~r~~~t~i~~-~~~i~~~r~~~~~~l~~~~~~~~~~l~~i~~~fp~~d~~~pfy~~ 151 (358)
.++|++||+||+++||||++|+||+|.+++..++ ..++.++|.+|+++++++++.+.++|..++..||.+|++||||++
T Consensus 2 ~~~f~kiptv~~~~ElIdk~f~Ra~r~~~~~~~~~~~~~~kar~~e~~rv~t~~~i~~d~l~~iv~~~P~id~LhpFY~e 81 (346)
T COG1084 2 MNPFKKIPTVPTADELIDKAFRRAERAESTVRPDKGPKIVKAREFEIRRVKTASNIVRDRLDKIVERFPSLDDLHPFYRE 81 (346)
T ss_pred CCccccCCCCCCcHHHHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccChHHHH
Confidence 3799999999999999999999999999988777 678999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccC
Q psy15712 152 LMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLYRCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRL 231 (358)
Q Consensus 152 ll~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~~~~~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l 231 (358)
|+|++++++++|.+|++|+||...++++.++|.++++.+.++.+|.+++|+++|||.++++++.+.+++|++++++|+++
T Consensus 82 Lidvl~d~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~L 161 (346)
T COG1084 82 LIDVLVDIDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKKL 161 (346)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHH
Q psy15712 232 PSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAV 311 (358)
Q Consensus 232 ~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~ 311 (358)
|.++++.++|+++|+||||||||+++|+++++++++|||||+++++||+..++.+||+|||||++|+|.+++|.+|++++
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi 241 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAI 241 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
.+|+|+.++|||++|+|..|||+.++|..++++|++.|. +|+++|+
T Consensus 242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~ 287 (346)
T COG1084 242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVI 287 (346)
T ss_pred HHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEE
Confidence 999999999999999999999999999999999999997 8999874
No 2
>KOG1490|consensus
Probab=100.00 E-value=3.9e-67 Score=511.23 Aligned_cols=288 Identities=71% Similarity=1.159 Sum_probs=283.9
Q ss_pred cccccccccccCCChHHHHHHHhccccccCCccccchhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhhCCCCCCCchhHH
Q psy15712 71 MPMYNFKKIAVVPTAKEFVDIMLSKTQRKTPTVIHKQYKISRIRSFYMRKIKYTQSNFHERLSQIIQEFPKLDNIHPFYA 150 (358)
Q Consensus 71 ~l~~~f~~ip~v~ta~elid~~l~ra~r~~~t~i~~~~~i~~~r~~~~~~l~~~~~~~~~~l~~i~~~fp~~d~~~pfy~ 150 (358)
|..++|++|++||++.+|+|.+++++|+++||+++++++|.|+|.||+++++++++.+.++|.+++++||.++++||||+
T Consensus 1 m~~~nfk~it~Vp~~~~~~d~~ls~tQr~tPTvi~k~~~i~riR~fy~rkvk~~~~~~~~kL~~il~~FP~~~~ihPfy~ 80 (620)
T KOG1490|consen 1 MAKANFKKITPVPDVNDFLDVVLSRTQRKTPTVIRKGFKISRIRQFYARKVKFTQTTLTEKLDDILQEFPKLNDIHPFYA 80 (620)
T ss_pred CcccccccccccCchhHHHHHHHhhhccCCCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhcc
Q psy15712 151 DLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLYRCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSR 230 (358)
Q Consensus 151 ~ll~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~~~~~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~ 230 (358)
+|++++|+.+|||.||+||+.|+..++.++++|+++++++++.++|++++++++|||+.+++++++.+.+|+++++++.+
T Consensus 81 dL~~~ly~~dhYk~aLgqv~~ak~lv~~vakdyvrLlk~~dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~r 160 (620)
T KOG1490|consen 81 DLLNILYDRDHYKIALGQVSTAKHLVENVARDYVRLLKYGDSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQHLSR 160 (620)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHH
Q psy15712 231 LPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQA 310 (358)
Q Consensus 231 l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~ 310 (358)
+|.+++..+++++||+||||||||+|.++.+++.+++|+|||+.+.+||+.+...+||++||||++++|.+++|.+|+++
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 311 VTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 311 ~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
+.++.|+..+|||++|+|+.||++.++|+.+|.+|++.|.|||+|+|.
T Consensus 241 ITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~Ilvl 288 (620)
T KOG1490|consen 241 ITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVL 288 (620)
T ss_pred HHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEe
Confidence 999999999999999999999999999999999999999999999984
No 3
>PF08155 NOGCT: NOGCT (NUC087) domain; InterPro: IPR012973 This C-terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [].
Probab=99.96 E-value=2.9e-30 Score=180.06 Aligned_cols=52 Identities=67% Similarity=1.101 Sum_probs=49.5
Q ss_pred hhhhhhhHHHHhC--CccccccccccCCC-CCcccccccccccCcccccccCccc
Q psy15712 17 KRKLERHIEEEMQ--DDYVLDLKKNYDLP-DEYKYDVIPEFMEGVNIADYIDPDI 68 (358)
Q Consensus 17 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~d~~p~~~~g~n~~d~~~~~~ 68 (358)
||+||||+|+|+| |+|++|||++|+|+ ||||||+|||||+||||||||||||
T Consensus 1 rr~lerd~e~e~Gg~gvy~~dlkk~y~L~~~ewk~D~IPEI~~GkNIaDfiDpdI 55 (55)
T PF08155_consen 1 RRKLERDIEEENGGAGVYSVDLKKHYDLKNDEWKYDIIPEIWDGKNIADFIDPDI 55 (55)
T ss_pred CchhHHHHHHHhCCCCccccchhhccccCChhHhcccchhhhcCcchhhccCCCC
Confidence 6899999999976 69999999999995 9999999999999999999999998
No 4
>COG2262 HflX GTPases [General function prediction only]
Probab=99.95 E-value=1e-26 Score=225.23 Aligned_cols=222 Identities=16% Similarity=0.161 Sum_probs=170.5
Q ss_pred HhhhhhhHHHHHHHHHhHhhhCCCCCCCchhHHHHHHHHhhcccchhhhhHHHHHHh--hHHHHHHHHHHHHhccCC---
Q psy15712 118 MRKIKYTQSNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARH--LIDNVAKDYLRLMKYADS--- 192 (358)
Q Consensus 118 ~~~l~~~~~~~~~~l~~i~~~fp~~d~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~--~~~~l~~~~~~~~k~~~~--- 192 (358)
...|+++|..+.++..++ .++||+ ..||+||..+++++++.+||+.|++ ..+++...|..+-+.+++
T Consensus 76 ~~~LsP~Q~~NLe~~l~~----kVIDRt----~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~ 147 (411)
T COG2262 76 DHELSPSQLRNLEKELGV----KVIDRT----QLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGIGF 147 (411)
T ss_pred CCcCCHHHHHHHHHHHCC----EEEehH----hHHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCCCC
Confidence 457899999998888776 899999 9999999999999999999999999 556999999887766543
Q ss_pred ----hHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCC
Q psy15712 193 ----LYRCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPY 268 (358)
Q Consensus 193 ----~~~~~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~ 268 (358)
-++....++.+..||..+.+++.. ++.-+... +..+...+.+.|++|||||+|||||+|+|+++.+.+.+.
T Consensus 148 rGpGE~~lE~drR~ir~rI~~i~~eLe~----v~~~R~~~-R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~ 222 (411)
T COG2262 148 RGPGETQLETDRRRIRRRIAKLKRELEN----VEKAREPR-RKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQ 222 (411)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-hhhhcccCCCeEEEEeeccccHHHHHHHHhccCeecccc
Confidence 234455577888888887776432 33333222 233445678999999999999999999999999999999
Q ss_pred CcceeeeEEEEEEec-CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHH----HHHH
Q psy15712 269 AFTTKSLYVGHTDYK-YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQI----GLFK 343 (358)
Q Consensus 269 ~~tT~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~----~ll~ 343 (358)
.|+|.+++...+.+. |.++.+.||.||++.-+...-...+.++....+ +|++|+|+|+|++. ..+++ +++.
T Consensus 223 LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~-aDlllhVVDaSdp~---~~~~~~~v~~vL~ 298 (411)
T COG2262 223 LFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKE-ADLLLHVVDASDPE---ILEKLEAVEDVLA 298 (411)
T ss_pred ccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhc-CCEEEEEeecCChh---HHHHHHHHHHHHH
Confidence 999999999999887 578999999999988544433333333333334 49999999999973 33333 4555
Q ss_pred HHcccCCCCeEEEeC
Q psy15712 344 SIRPLFNNKVGPLEY 358 (358)
Q Consensus 344 ~i~~~f~~kPvilvf 358 (358)
++.. .++|+|+||
T Consensus 299 el~~--~~~p~i~v~ 311 (411)
T COG2262 299 EIGA--DEIPIILVL 311 (411)
T ss_pred HcCC--CCCCEEEEE
Confidence 5533 368999986
No 5
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=1.5e-24 Score=212.31 Aligned_cols=224 Identities=17% Similarity=0.185 Sum_probs=156.9
Q ss_pred HhhhhhhHHHHHHHHHhHhhhCCCCCCCchhHHHHHHHHhhcccchhhhhHHHHHHh--hHHHHHHHHHHHHhccCCh--
Q psy15712 118 MRKIKYTQSNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARH--LIDNVAKDYLRLMKYADSL-- 193 (358)
Q Consensus 118 ~~~l~~~~~~~~~~l~~i~~~fp~~d~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~--~~~~l~~~~~~~~k~~~~~-- 193 (358)
...|+++|..+.+...++ +++||+ ..+|+||..++++++|.+|++.|++ ..+++...|..+.+.+...
T Consensus 73 ~~~l~p~q~~nl~~~~~~----~v~Dr~----~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~ 144 (351)
T TIGR03156 73 DHELSPSQERNLEKALGC----RVIDRT----GLILDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGT 144 (351)
T ss_pred CCCCCHHHHHHHHHHhCC----cccchH----HHHHHHHHHhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCC
Confidence 467899999998888766 999999 9999999999999999999999998 4467777787765543321
Q ss_pred ---HH--HHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCC
Q psy15712 194 ---YR--CKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPY 268 (358)
Q Consensus 194 ---~~--~~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~ 268 (358)
.+ ...-++....++..+..++.. +..-+...+ ..+...+.++|+++|+||||||||+|+|++....+.+.
T Consensus 145 ~g~gE~~~~~~~~~i~~ri~~l~~~L~~----~~~~~~~~r-~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~ 219 (351)
T TIGR03156 145 RGPGETQLETDRRLIRERIAQLKKELEK----VEKQRERQR-RRRKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQ 219 (351)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-hhhcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccC
Confidence 11 122245555666665555322 222222211 12223456899999999999999999999998778899
Q ss_pred CcceeeeEEEEEEe-cCceEEEEeCCCCCCC-CcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCH-HHHHHHHHHH
Q psy15712 269 AFTTKSLYVGHTDY-KYLRWQVIDTPGILDH-SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSI-QEQIGLFKSI 345 (358)
Q Consensus 269 ~~tT~~~~~~~~~~-~~~~~~liDTPG~~~~-~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~-~~q~~ll~~i 345 (358)
+|+|.++..+.+.+ ++..+++|||||+... +.+..+.+. .+...+.+. |++++|+|++++..... .....++..+
T Consensus 220 ~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~-~tle~~~~A-Dlil~VvD~s~~~~~~~~~~~~~~L~~l 297 (351)
T TIGR03156 220 LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFR-ATLEEVREA-DLLLHVVDASDPDREEQIEAVEKVLEEL 297 (351)
T ss_pred CccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHH-HHHHHHHhC-CEEEEEEECCCCchHHHHHHHHHHHHHh
Confidence 99999999999888 5679999999999654 333222222 233344454 99999999998653211 1112445554
Q ss_pred cccCCCCeEEEeC
Q psy15712 346 RPLFNNKVGPLEY 358 (358)
Q Consensus 346 ~~~f~~kPvilvf 358 (358)
.. .++|+++|+
T Consensus 298 ~~--~~~piIlV~ 308 (351)
T TIGR03156 298 GA--EDIPQLLVY 308 (351)
T ss_pred cc--CCCCEEEEE
Confidence 32 368988875
No 6
>PRK11058 GTPase HflX; Provisional
Probab=99.93 E-value=1e-24 Score=218.30 Aligned_cols=224 Identities=17% Similarity=0.189 Sum_probs=158.4
Q ss_pred HhhhhhhHHHHHHHHHhHhhhCCCCCCCchhHHHHHHHHhhcccchhhhhHHHHHHhh--HHHHHHHHHHHHhccCChH-
Q psy15712 118 MRKIKYTQSNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARHL--IDNVAKDYLRLMKYADSLY- 194 (358)
Q Consensus 118 ~~~l~~~~~~~~~~l~~i~~~fp~~d~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~~--~~~l~~~~~~~~k~~~~~~- 194 (358)
...|+++|..+.++..++ +++||+ ..+|+||..++++++|.+||+.|++. .+++...|.++.+.+++.+
T Consensus 81 ~~~lsp~q~~nle~~~~~----~v~DR~----~lil~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~ 152 (426)
T PRK11058 81 DHALSPAQERNLERLCEC----RVIDRT----GLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGL 152 (426)
T ss_pred CCCCCHHHHHHHHHHHCC----eEecch----hHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCC
Confidence 366899999998888766 999999 99999999999999999999999994 4688888988888765332
Q ss_pred ------HHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCC
Q psy15712 195 ------RCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPY 268 (358)
Q Consensus 195 ------~~~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~ 268 (358)
....-++....++..+.+.+......-+.- +..+.....+.|+++|+||||||||+|+|++.++.+++.
T Consensus 153 ~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~-----r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~ 227 (426)
T PRK11058 153 RGPGETQLETDRRLLRNRIVQILSRLERVEKQREQG-----RRARIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQ 227 (426)
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccC
Confidence 222235566666666666543322211111 111122245789999999999999999999998888899
Q ss_pred CcceeeeEEEEEEecCc-eEEEEeCCCCCCC-CcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHH-HHHHHHHHH
Q psy15712 269 AFTTKSLYVGHTDYKYL-RWQVIDTPGILDH-SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQ-EQIGLFKSI 345 (358)
Q Consensus 269 ~~tT~~~~~~~~~~~~~-~~~liDTPG~~~~-~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~-~q~~ll~~i 345 (358)
+|+|.++..+.+.+.+. .+.+|||||+... +.+....+. .+...+.. +|++|+|+|+|++...... ....++..+
T Consensus 228 ~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~-~tl~~~~~-ADlIL~VvDaS~~~~~e~l~~v~~iL~el 305 (426)
T PRK11058 228 LFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFK-ATLQETRQ-ATLLLHVVDAADVRVQENIEAVNTVLEEI 305 (426)
T ss_pred CCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHH-HHHHHhhc-CCEEEEEEeCCCccHHHHHHHHHHHHHHh
Confidence 99999999988888765 8999999999654 332222221 12333334 4999999999986432111 123455555
Q ss_pred cccCCCCeEEEeC
Q psy15712 346 RPLFNNKVGPLEY 358 (358)
Q Consensus 346 ~~~f~~kPvilvf 358 (358)
.. .++|+++|+
T Consensus 306 ~~--~~~pvIiV~ 316 (426)
T PRK11058 306 DA--HEIPTLLVM 316 (426)
T ss_pred cc--CCCCEEEEE
Confidence 43 268988874
No 7
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.80 E-value=5.7e-19 Score=153.62 Aligned_cols=110 Identities=24% Similarity=0.264 Sum_probs=86.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh-hcc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA-HLR 318 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~-~~~ 318 (358)
+|+++|.||||||||+|+|+|.+..++++|++|.+...+.+.+.+..+.++||||+.+-.....+ |+.+..++. +-+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~l~~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE--ERVARDYLLSEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH--HHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH--HHHHHHHHhhcCC
Confidence 69999999999999999999999999999999999999999999999999999998765333222 333444543 446
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 319 AAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 319 d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
|++++|+|+++ +++.+.++.++.+. ++|+++++
T Consensus 80 D~ii~VvDa~~-----l~r~l~l~~ql~e~--g~P~vvvl 112 (156)
T PF02421_consen 80 DLIIVVVDATN-----LERNLYLTLQLLEL--GIPVVVVL 112 (156)
T ss_dssp SEEEEEEEGGG-----HHHHHHHHHHHHHT--TSSEEEEE
T ss_pred CEEEEECCCCC-----HHHHHHHHHHHHHc--CCCEEEEE
Confidence 99999999876 56677787887766 79999874
No 8
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.79 E-value=1.2e-18 Score=151.62 Aligned_cols=120 Identities=66% Similarity=1.080 Sum_probs=96.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLR 318 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~ 318 (358)
|+|+++|.+|||||||+|+|++..+.+++++++|.+...+...+++..+++|||||+.+.+...++.++..+..++.+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 47999999999999999999998887788899999999888888888999999999976655444445545555556666
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 319 AAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 319 d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
|++++|+|+++..+++.+.+..++..++..+.++|+++|.
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~ 120 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVL 120 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEE
Confidence 8999999999876655566667888887666678999873
No 9
>KOG0410|consensus
Probab=99.77 E-value=5.5e-18 Score=159.64 Aligned_cols=197 Identities=15% Similarity=0.141 Sum_probs=133.6
Q ss_pred HHHHHHHHhHhhhCCCCCCCchhHHHHHHHHhhcccchhhhhHHHHHHh--hHHHHHHHHHHHHhccCChHHHHHHHHHH
Q psy15712 126 SNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARH--LIDNVAKDYLRLMKYADSLYRCKQLKKAA 203 (358)
Q Consensus 126 ~~~~~~l~~i~~~fp~~d~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~--~~~~l~~~~~~~~k~~~~~~~~~~l~~~~ 203 (358)
+.....+..+ |++|+. ..+++||-+.+.+++|.+|+..|.. .-.++...|.++.+..++...- .-.+..
T Consensus 71 ~~ek~r~~~V----rvfDr~----~~vl~if~q~a~T~earlqvalAempy~~~rl~r~~~hl~r~~g~~v~g-sges~i 141 (410)
T KOG0410|consen 71 MYEKSRLVRV----RVFDRR----HTVLQIFEQEAVTAEARLQVALAEMPYVGGRLERELQHLRRQSGGQVKG-SGESII 141 (410)
T ss_pred HHHHhhhcce----eeecch----hhHHHHHHHHhhhHHHHHhhhhhcCccccchHHHHHHHHHhcCCCcccC-ccchHh
Confidence 3333445555 899998 7889999999999999999999987 4468889999988865432100 000111
Q ss_pred HHhHHHHHHHH-hhhhHHHHHHHHHh-ccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEE
Q psy15712 204 LGRMATIMKRQ-ASNLEYLEQVRQHL-SRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTD 281 (358)
Q Consensus 204 ~gr~~~i~~~~-~~~l~~l~~~~~~l-~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~ 281 (358)
-+++..+++.. ...-..|+.++++. .+..+.....++|++|||||+|||||+++|+++.+...+..|.|.+++.....
T Consensus 142 d~d~~rllr~kea~lrKeL~~vrrkr~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~ 221 (410)
T KOG0410|consen 142 DRDIRRLLRIKEAQLRKELQRVRRKRQRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAH 221 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhcc
Confidence 11121222111 11122345555443 34555666789999999999999999999998888888999999999876665
Q ss_pred ec-CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCC
Q psy15712 282 YK-YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCG 332 (358)
Q Consensus 282 ~~-~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~ 332 (358)
.. |..+.+.||.||+..-+...-....-++..+.+. |++|+|+|+|+|.-
T Consensus 222 Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaea-dlllHvvDiShP~a 272 (410)
T KOG0410|consen 222 LPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEA-DLLLHVVDISHPNA 272 (410)
T ss_pred CCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhc-ceEEEEeecCCccH
Confidence 54 5678999999999763332222222233333444 99999999999863
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=3.3e-18 Score=168.52 Aligned_cols=113 Identities=27% Similarity=0.348 Sum_probs=92.5
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCc-chHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL-EDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~-~~~~~ie~~~~~~l~~ 316 (358)
++|++||.||||||||+|+|++.+.. |+++|++|++...+...|.+..+.+|||+|+.+... .....+..++..++.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999965 999999999999999999999999999999986553 3445566778888888
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+ |++|||+|........++. +.+.++.. +||+|+|
T Consensus 84 A-DvilfvVD~~~Git~~D~~---ia~~Lr~~--~kpviLv 118 (444)
T COG1160 84 A-DVILFVVDGREGITPADEE---IAKILRRS--KKPVILV 118 (444)
T ss_pred C-CEEEEEEeCCCCCCHHHHH---HHHHHHhc--CCCEEEE
Confidence 8 9999999987754443333 44444332 6899987
No 11
>COG1159 Era GTPase [General function prediction only]
Probab=99.76 E-value=4e-18 Score=159.94 Aligned_cols=115 Identities=25% Similarity=0.320 Sum_probs=96.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
...-|+++|.||||||||+|+|.|.++. +++.|.||++...|....+..++.++||||+..+.......+...+..++.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 3457999999999999999999999975 899999999999999999999999999999998765555556666777777
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.. |++|||+|++++.+...+.+++.++. .+.|++++
T Consensus 85 dv-Dlilfvvd~~~~~~~~d~~il~~lk~-----~~~pvil~ 120 (298)
T COG1159 85 DV-DLILFVVDADEGWGPGDEFILEQLKK-----TKTPVILV 120 (298)
T ss_pred cC-cEEEEEEeccccCCccHHHHHHHHhh-----cCCCeEEE
Confidence 77 99999999999888767666666655 25677765
No 12
>KOG1490|consensus
Probab=99.73 E-value=3.7e-19 Score=175.30 Aligned_cols=58 Identities=40% Similarity=0.771 Sum_probs=55.1
Q ss_pred chhhhhhhHHHHhCCccccccccccCC-CCCcccccccccccCcccccccCcccccccc
Q psy15712 16 VKRKLERHIEEEMQDDYVLDLKKNYDL-PDEYKYDVIPEFMEGVNIADYIDPDIFKMPM 73 (358)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~p~~~~g~n~~d~~~~~~~~~l~ 73 (358)
++|+++||+|.||||+|+++|+++|.| ++|||||+|||||+|||||||+||||+.++.
T Consensus 387 ~~rk~~~die~e~g~~y~~~lk~~Y~l~~~e~k~di~pEi~dg~Nvadf~Dp~i~~kl~ 445 (620)
T KOG1490|consen 387 NRRKLARDIEAENGGAYNVELRDKYILQDPSWKYDIMPEILDGKNVADFVDPEIEAKLL 445 (620)
T ss_pred hhhhhHHHHHHHhCcchhHHhhhccccCChhhhhcccHHHhcCcchhhhcCHHHHHHHH
Confidence 369999999999999999999999999 5999999999999999999999999999874
No 13
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.72 E-value=1.3e-16 Score=131.39 Aligned_cols=112 Identities=25% Similarity=0.416 Sum_probs=84.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHH-HHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRN-IIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~-~ie~~~~~~l~~~ 317 (358)
.|+++|.||+|||||+|+|++.+. .+++.+++|+....+.+.+.+..+.++||||+.+....... .....+...+...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 489999999999999999999764 68899999999988888889999999999999876433321 1222244455444
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
|+++||+|+++. ..+....++++++ .++|+++|+
T Consensus 81 -d~ii~vv~~~~~---~~~~~~~~~~~l~---~~~~~i~v~ 114 (116)
T PF01926_consen 81 -DLIIYVVDASNP---ITEDDKNILRELK---NKKPIILVL 114 (116)
T ss_dssp -SEEEEEEETTSH---SHHHHHHHHHHHH---TTSEEEEEE
T ss_pred -CEEEEEEECCCC---CCHHHHHHHHHHh---cCCCEEEEE
Confidence 999999997662 1234456667774 478999885
No 14
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=2.6e-16 Score=153.32 Aligned_cols=115 Identities=19% Similarity=0.368 Sum_probs=86.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe-cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY-KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLR 318 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~ 318 (358)
.|++||+||||||||+|+|+++++.+++|||||..++.+.+.+ ++.++++|||||+.+....... +...+...++..
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~g-Lg~~flrhie~a- 237 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAG-LGHRFLKHIERT- 237 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcccc-HHHHHHHHhhhc-
Confidence 6899999999999999999999999999999999999999988 5568999999999875443221 222333444444
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHcc---cCCCCeEEEeC
Q psy15712 319 AAVLYFIDISEQCGHSIQEQIGLFKSIRP---LFNNKVGPLEY 358 (358)
Q Consensus 319 d~iL~VvD~s~~~~~~~~~q~~ll~~i~~---~f~~kPvilvf 358 (358)
++++||+|+++.. +.+....|..++.. .+.++|+++|.
T Consensus 238 ~vlI~ViD~s~~~--s~e~~~~~~~EL~~~~~~L~~kp~IIV~ 278 (335)
T PRK12299 238 RLLLHLVDIEAVD--PVEDYKTIRNELEKYSPELADKPRILVL 278 (335)
T ss_pred CEEEEEEcCCCCC--CHHHHHHHHHHHHHhhhhcccCCeEEEE
Confidence 8999999999754 34433345555543 23478998873
No 15
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.68 E-value=9.4e-16 Score=151.61 Aligned_cols=110 Identities=27% Similarity=0.353 Sum_probs=86.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHH----HHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEM----QAV 311 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~----~~~ 311 (358)
....++++|.||||||||+|+|++.+. -|++.|+||++....++..+|..+.++||+|+-+.. +.+|+ ++.
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~----d~VE~iGIeRs~ 291 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD----DVVERIGIERAK 291 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc----cHHHHHHHHHHH
Confidence 567899999999999999999999886 499999999999999999999999999999997553 23343 245
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
..+... |.+|||+|++.+... ....++..+ ..++|+++|
T Consensus 292 ~~i~~A-DlvL~v~D~~~~~~~---~d~~~~~~~---~~~~~~i~v 330 (454)
T COG0486 292 KAIEEA-DLVLFVLDASQPLDK---EDLALIELL---PKKKPIIVV 330 (454)
T ss_pred HHHHhC-CEEEEEEeCCCCCch---hhHHHHHhc---ccCCCEEEE
Confidence 566666 999999999986322 334444422 236788776
No 16
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.67 E-value=6.9e-16 Score=146.13 Aligned_cols=112 Identities=24% Similarity=0.329 Sum_probs=82.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLR 318 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~ 318 (358)
.|+++|.||||||||+|+|++.++ .+++.|+||++...+....++.++.+|||||+..........+...+..++...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a- 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV- 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC-
Confidence 589999999999999999999986 488999999998877776677789999999997653332222333344556655
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 319 AAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 319 d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
|++++|+|++...... ..++..+... ++|+++|+
T Consensus 81 Dvvl~VvD~~~~~~~~----~~i~~~l~~~--~~p~ilV~ 114 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG----EFVLTKLQNL--KRPVVLTR 114 (270)
T ss_pred CEEEEEEECCCCCchH----HHHHHHHHhc--CCCEEEEE
Confidence 9999999998754321 2233444332 68888763
No 17
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=4e-16 Score=154.88 Aligned_cols=117 Identities=23% Similarity=0.384 Sum_probs=85.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC-ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY-LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLR 318 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~ 318 (358)
.|++||+||||||||+|+|+++++.++++||||+.++.+.+.+.+ ..++++||||+......... +.......+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~-Lg~~~l~~i~ra- 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAG-LGIRFLKHLERC- 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhh-HHHHHHHHHHhC-
Confidence 599999999999999999999999999999999999999998875 46999999999875433221 222233455555
Q ss_pred cEEEEEEeCCCCCCC-CHHHHHHHHHHHcc---cCCCCeEEEeC
Q psy15712 319 AAVLYFIDISEQCGH-SIQEQIGLFKSIRP---LFNNKVGPLEY 358 (358)
Q Consensus 319 d~iL~VvD~s~~~~~-~~~~q~~ll~~i~~---~f~~kPvilvf 358 (358)
|++++|+|++..... ..+....+++++.. .+.++|+++|+
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVl 282 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVF 282 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEE
Confidence 999999999843222 22222334444433 23478998874
No 18
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.66 E-value=4e-15 Score=134.33 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=82.4
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc-eEEEEeCCCCCCCCcchH-HHHHHHHHH
Q psy15712 235 DPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL-RWQVIDTPGILDHSLEDR-NIIEMQAVT 312 (358)
Q Consensus 235 ~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~-~~~liDTPG~~~~~~~~~-~~ie~~~~~ 312 (358)
++..++|+++|.+|||||||+|+|++....+.+.+++|.+...+.+.+.+. .+++|||||+.+...... ..+. ....
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-~~~~ 116 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFR-STLE 116 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHH-HHHH
Confidence 445689999999999999999999998877777788888888877777665 899999999976532221 1111 1112
Q ss_pred HHhhcccEEEEEEeCCCCCCCCH-HHHHHHHHHHcccCCCCeEEEeC
Q psy15712 313 ALAHLRAAVLYFIDISEQCGHSI-QEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~~~-~~q~~ll~~i~~~f~~kPvilvf 358 (358)
.+.. .|++++|+|++++..... ....+++..+.. .++|+++|.
T Consensus 117 ~~~~-~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~--~~~~viiV~ 160 (204)
T cd01878 117 EVAE-ADLLLHVVDASDPDYEEQIETVEKVLKELGA--EDIPMILVL 160 (204)
T ss_pred HHhc-CCeEEEEEECCCCChhhHHHHHHHHHHHcCc--CCCCEEEEE
Confidence 2333 499999999998653322 122334444322 367888873
No 19
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=1.9e-15 Score=151.10 Aligned_cols=117 Identities=22% Similarity=0.358 Sum_probs=86.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec-CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK-YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLR 318 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~ 318 (358)
.|++||+||||||||+|+|+++++.++++||||..++.+.+.+. +.++.++||||+......... +...+...+..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~g-Lg~~fLrhier~- 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVG-LGHQFLRHIERT- 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccch-HHHHHHHHHhhC-
Confidence 69999999999999999999999999999999999999998887 679999999999865433211 222233333334
Q ss_pred cEEEEEEeCCCCCC-CCHHHHHHHHHHHcc---cCCCCeEEEeC
Q psy15712 319 AAVLYFIDISEQCG-HSIQEQIGLFKSIRP---LFNNKVGPLEY 358 (358)
Q Consensus 319 d~iL~VvD~s~~~~-~~~~~q~~ll~~i~~---~f~~kPvilvf 358 (358)
++++||+|+++..+ .+.+....+.+++.. .+.++|+++|.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~ 281 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVA 281 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEE
Confidence 99999999987522 333443445555543 23578998873
No 20
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=2.3e-15 Score=152.69 Aligned_cols=89 Identities=24% Similarity=0.433 Sum_probs=72.5
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLR 318 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~ 318 (358)
..|+|||+||||||||+|+|+++++.++++||||..++.+.+.+.+.+++++||||+........ .+...++..+...
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~-gLg~~fLrhiera- 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGK-GLGLDFLRHIERC- 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhh-HHHHHHHHHHHhc-
Confidence 47999999999999999999999999999999999999999999889999999999986543221 1222233334444
Q ss_pred cEEEEEEeCCC
Q psy15712 319 AAVLYFIDISE 329 (358)
Q Consensus 319 d~iL~VvD~s~ 329 (358)
|+++||+|+++
T Consensus 238 dvLv~VVD~s~ 248 (500)
T PRK12296 238 AVLVHVVDCAT 248 (500)
T ss_pred CEEEEEECCcc
Confidence 99999999986
No 21
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.63 E-value=1.8e-15 Score=147.11 Aligned_cols=117 Identities=21% Similarity=0.369 Sum_probs=85.5
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC-ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY-LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
..|++||+||||||||+|+|+++++.++++||||..++.+.+.+.+ .++++|||||+......... +...+...+...
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~g-Lg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAG-LGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccccc-HHHHHHHHHHhh
Confidence 3689999999999999999999998999999999999999998877 79999999999865433221 222333344444
Q ss_pred ccEEEEEEeCCCCCC-CCHHHHHHHHHHHc---ccCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCG-HSIQEQIGLFKSIR---PLFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~-~~~~~q~~ll~~i~---~~f~~kPvilv 357 (358)
++++||+|+++... .+.+....+.+++. +...++|+++|
T Consensus 237 -d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV 279 (329)
T TIGR02729 237 -RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVV 279 (329)
T ss_pred -CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEE
Confidence 89999999987532 22222223444443 22357898887
No 22
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.62 E-value=3.3e-14 Score=143.91 Aligned_cols=113 Identities=26% Similarity=0.313 Sum_probs=82.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHH-HHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNII-EMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~i-e~~~~~~l 314 (358)
..++|+++|+||||||||+|+|++.+. .+++.++||++.....+.+++..+.+|||||+.+.. ...+.. ...+...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~-~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD-DEVEKIGIERSREAI 292 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc-cHHHHHHHHHHHHHH
Confidence 357899999999999999999999875 478999999999999999999999999999986422 111111 11233445
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
... |++++|+|++++.... +..++.. ..++|+++|+
T Consensus 293 ~~a-D~il~VvD~s~~~s~~---~~~~l~~----~~~~piiiV~ 328 (449)
T PRK05291 293 EEA-DLVLLVLDASEPLTEE---DDEILEE----LKDKPVIVVL 328 (449)
T ss_pred HhC-CEEEEEecCCCCCChh---HHHHHHh----cCCCCcEEEE
Confidence 555 9999999998854332 3344433 3468888874
No 23
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.61 E-value=2.2e-15 Score=148.60 Aligned_cols=154 Identities=23% Similarity=0.227 Sum_probs=111.4
Q ss_pred HHHHHHHHhHHHHHHHHh-hhhHHHHHHHHHhc-cCC-CC-C-CCCcEEEEecCCCCCHHHHHHHHhCCC-CcccCCCcc
Q psy15712 198 QLKKAALGRMATIMKRQA-SNLEYLEQVRQHLS-RLP-SI-D-PFTRTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFT 271 (358)
Q Consensus 198 ~l~~~~~gr~~~i~~~~~-~~l~~l~~~~~~l~-~l~-~~-~-~~~~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~t 271 (358)
.....++|++..+...++ +..+.++.+.+.+. ... .. + .....|+++|.||||||||+|+|+|.+ +-+++.++|
T Consensus 133 efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGT 212 (444)
T COG1160 133 EFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGT 212 (444)
T ss_pred HHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCc
Confidence 345556777777777665 45567777777762 111 11 1 246899999999999999999999987 569999999
Q ss_pred eeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHH----HHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Q psy15712 272 TKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEM----QAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRP 347 (358)
Q Consensus 272 T~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~----~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~ 347 (358)
|++.....+.+++..|.++||+|+-....-. +.+|. .+..++... |++++|+|++.+... +..++...+..
T Consensus 213 TRD~I~~~~e~~~~~~~liDTAGiRrk~ki~-e~~E~~Sv~rt~~aI~~a-~vvllviDa~~~~~~---qD~~ia~~i~~ 287 (444)
T COG1160 213 TRDSIDIEFERDGRKYVLIDTAGIRRKGKIT-ESVEKYSVARTLKAIERA-DVVLLVIDATEGISE---QDLRIAGLIEE 287 (444)
T ss_pred cccceeeeEEECCeEEEEEECCCCCcccccc-cceEEEeehhhHhHHhhc-CEEEEEEECCCCchH---HHHHHHHHHHH
Confidence 9999999999999999999999997654322 11222 344566666 999999999996643 33445554444
Q ss_pred cCCCCeEEEeC
Q psy15712 348 LFNNKVGPLEY 358 (358)
Q Consensus 348 ~f~~kPvilvf 358 (358)
. +++++||+
T Consensus 288 ~--g~~~vIvv 296 (444)
T COG1160 288 A--GRGIVIVV 296 (444)
T ss_pred c--CCCeEEEE
Confidence 4 78888874
No 24
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.61 E-value=4.3e-15 Score=129.21 Aligned_cols=115 Identities=21% Similarity=0.330 Sum_probs=79.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc-eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL-RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLR 318 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~-~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~ 318 (358)
.|+++|.+|||||||+|+|++....++.++++|..+..+.+.+.+. .+.+|||||+.+....... +...+...+...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-~~~~~~~~~~~~- 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKG-LGHRFLRHIERT- 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCC-chHHHHHHHHhC-
Confidence 4899999999999999999998887888899999998888888776 9999999998643222111 112222334444
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHcc---cCCCCeEEEe
Q psy15712 319 AAVLYFIDISEQCGHSIQEQIGLFKSIRP---LFNNKVGPLE 357 (358)
Q Consensus 319 d~iL~VvD~s~~~~~~~~~q~~ll~~i~~---~f~~kPvilv 357 (358)
|++++|+|+++.. .+.+....+.+++.. ...++|+++|
T Consensus 80 d~vi~v~D~~~~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv 120 (170)
T cd01898 80 RLLLHVIDLSGDD-DPVEDYKTIRNELELYNPELLEKPRIVV 120 (170)
T ss_pred CEEEEEEecCCCC-CHHHHHHHHHHHHHHhCccccccccEEE
Confidence 9999999998751 222222234444332 2246788776
No 25
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.60 E-value=1e-14 Score=131.44 Aligned_cols=114 Identities=22% Similarity=0.244 Sum_probs=78.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccC--CCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHH---
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQP--YAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL--- 314 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~--~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l--- 314 (358)
+|+++|.||||||||+|+|+|.+..... .+++|..++.+...+++.++.++||||+.+..... ..+.......+
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~-~~~~~~i~~~~~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP-EQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh-HHHHHHHHHHHHhc
Confidence 6999999999999999999998754333 45789998888888899999999999999864322 11222112222
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCC---CCeEEEeC
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFN---NKVGPLEY 358 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~---~kPvilvf 358 (358)
....|++|||+|+.+ ..... ...++.++..|. .+++++||
T Consensus 81 ~~g~~~illVi~~~~-~t~~d---~~~l~~l~~~fg~~~~~~~ivv~ 123 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEE---EQAVETLQELFGEKVLDHTIVLF 123 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHH---HHHHHHHHHHhChHhHhcEEEEE
Confidence 233589999999876 44333 334444444342 25666664
No 26
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.59 E-value=2.3e-15 Score=142.40 Aligned_cols=95 Identities=31% Similarity=0.495 Sum_probs=80.0
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 235 DPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 235 ~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
..+..++++||+||||||||+|+||+.+.++++|+|||..+..|.+.++|-.+|++|+||++.....+++. -++.+++.
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~gr-G~~vlsv~ 138 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGR-GRQVLSVA 138 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCC-cceeeeee
Confidence 35667999999999999999999999999999999999999999999999999999999999875554431 12344455
Q ss_pred hhcccEEEEEEeCCCCC
Q psy15712 315 AHLRAAVLYFIDISEQC 331 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~ 331 (358)
+.+ |+|++|+|+....
T Consensus 139 R~A-DlIiiVld~~~~~ 154 (365)
T COG1163 139 RNA-DLIIIVLDVFEDP 154 (365)
T ss_pred ccC-CEEEEEEecCCCh
Confidence 555 9999999998754
No 27
>KOG1489|consensus
Probab=99.59 E-value=4e-15 Score=140.21 Aligned_cols=114 Identities=27% Similarity=0.463 Sum_probs=89.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCce-EEEEeCCCCCCCCcchHHHHHHHHHHHHhhc-
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLR-WQVIDTPGILDHSLEDRNIIEMQAVTALAHL- 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~-~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~- 317 (358)
.|++||+||+|||||+|+|+.+++.+++|+|||..++.+.+.+++.. +.+-|.||++...+.++. +....|+|+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkG----lG~~FLrHiE 273 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKG----LGYKFLRHIE 273 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCc----ccHHHHHHHH
Confidence 68999999999999999999999999999999999999998887764 999999999987654433 233455554
Q ss_pred -ccEEEEEEeCCCCCCCCHHHHHHHHH-HH---cccCCCCeEEEe
Q psy15712 318 -RAAVLYFIDISEQCGHSIQEQIGLFK-SI---RPLFNNKVGPLE 357 (358)
Q Consensus 318 -~d~iL~VvD~s~~~~~~~~~q~~ll~-~i---~~~f~~kPvilv 357 (358)
++.++||+|+|...-.+..+|+++|. ++ .+...++|.++|
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liV 318 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIV 318 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEE
Confidence 38899999999864444555555443 33 344578898887
No 28
>PRK15494 era GTPase Era; Provisional
Probab=99.59 E-value=1.7e-14 Score=141.07 Aligned_cols=115 Identities=29% Similarity=0.338 Sum_probs=83.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
....|+++|.||||||||+|+|++.++. +++.++||++...+.+.+++.++.+|||||+.+........+...+..++.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 4568999999999999999999998864 678899999988888888888999999999975433332333333445555
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+ |++++|+|++....... ..++..++.. ++|.++|
T Consensus 131 ~a-Dvil~VvD~~~s~~~~~---~~il~~l~~~--~~p~IlV 166 (339)
T PRK15494 131 SA-DLVLLIIDSLKSFDDIT---HNILDKLRSL--NIVPIFL 166 (339)
T ss_pred hC-CEEEEEEECCCCCCHHH---HHHHHHHHhc--CCCEEEE
Confidence 55 99999999876433211 2344444432 4565554
No 29
>PRK00089 era GTPase Era; Reviewed
Probab=99.59 E-value=1.5e-14 Score=138.30 Aligned_cols=116 Identities=24% Similarity=0.312 Sum_probs=83.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
+...|+++|.||||||||+|+|+|.++. +++.+.||+....+....++.++.++||||+.+........+...+..++.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3567999999999999999999999864 788899999888877766667999999999976543222223333444555
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
.. |++++|+|+++...... ..++..+... ++|+++|+
T Consensus 84 ~~-D~il~vvd~~~~~~~~~---~~i~~~l~~~--~~pvilVl 120 (292)
T PRK00089 84 DV-DLVLFVVDADEKIGPGD---EFILEKLKKV--KTPVILVL 120 (292)
T ss_pred cC-CEEEEEEeCCCCCChhH---HHHHHHHhhc--CCCEEEEE
Confidence 55 99999999988443322 2334444332 57888873
No 30
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=1.9e-14 Score=146.66 Aligned_cols=115 Identities=23% Similarity=0.250 Sum_probs=87.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..++|+++|.||||||||+|+|++... .+.+.|++|++...+...+.+..+++|||||+..........+..++..++.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 357899999999999999999998774 4788999999999998899999999999999864332222334455556667
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.. |++|+|+|+++........ ++..+.. .++|+++|
T Consensus 117 ~a-D~il~VvD~~~~~s~~~~~---i~~~l~~--~~~piilV 152 (472)
T PRK03003 117 TA-DAVLFVVDATVGATATDEA---VARVLRR--SGKPVILA 152 (472)
T ss_pred hC-CEEEEEEECCCCCCHHHHH---HHHHHHH--cCCCEEEE
Confidence 76 9999999999865543333 3333333 27899887
No 31
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.59 E-value=1.3e-14 Score=145.76 Aligned_cols=112 Identities=27% Similarity=0.275 Sum_probs=85.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLR 318 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~ 318 (358)
+|+++|.||||||||+|+|++... .+++.|++|++...+...+++..+.+|||||+..........+..++..++...
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a- 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA- 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC-
Confidence 489999999999999999999875 478899999999999999999999999999986443322344555666677776
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 319 AAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 319 d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
|++++|+|++......... +...++.. ++|+++|
T Consensus 80 d~vl~vvD~~~~~~~~d~~---i~~~l~~~--~~piilV 113 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEE---IAKWLRKS--GKPVILV 113 (429)
T ss_pred CEEEEEEeCCCCCCHHHHH---HHHHHHHh--CCCEEEE
Confidence 9999999998754332222 33333332 6888886
No 32
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.58 E-value=4e-14 Score=142.84 Aligned_cols=110 Identities=27% Similarity=0.373 Sum_probs=83.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHH----HHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEM----QAV 311 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~----~~~ 311 (358)
...+|+++|.||||||||+|+|++... .++++|+||++.....+.+++..+.+|||||+.+.. ..++. .+.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~----~~ie~~gi~~~~ 277 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA----DFVERLGIEKSF 277 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch----hHHHHHHHHHHH
Confidence 457899999999999999999998764 588999999999999999999999999999996532 11221 234
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.++... |++++|+|++++... +. . ++..+... ++|+++|
T Consensus 278 ~~~~~a-D~il~V~D~s~~~s~--~~-~-~l~~~~~~--~~piIlV 316 (442)
T TIGR00450 278 KAIKQA-DLVIYVLDASQPLTK--DD-F-LIIDLNKS--KKPFILV 316 (442)
T ss_pred HHHhhC-CEEEEEEECCCCCCh--hH-H-HHHHHhhC--CCCEEEE
Confidence 455555 999999999875432 22 2 55555432 6888876
No 33
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.57 E-value=1.8e-14 Score=136.49 Aligned_cols=87 Identities=24% Similarity=0.369 Sum_probs=71.3
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc-----------------eEEEEeCCCCCCCCcchH
Q psy15712 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL-----------------RWQVIDTPGILDHSLEDR 303 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTPG~~~~~~~~~ 303 (358)
|++||.||||||||+|+|++.+..++++||||.++..+.+.+.+. .++++||||+.......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~- 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG- 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh-
Confidence 589999999999999999999999999999999999998887654 48999999998654333
Q ss_pred HHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 304 NIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 304 ~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
..+...+...+++. |++++|+|+++
T Consensus 80 ~glg~~fL~~i~~~-D~li~VV~~f~ 104 (274)
T cd01900 80 EGLGNKFLSHIREV-DAIAHVVRCFE 104 (274)
T ss_pred hHHHHHHHHHHHhC-CEEEEEEeCcC
Confidence 22333455566666 99999999864
No 34
>PTZ00258 GTP-binding protein; Provisional
Probab=99.57 E-value=2.5e-14 Score=141.31 Aligned_cols=91 Identities=18% Similarity=0.283 Sum_probs=75.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc-----------------eEEEEeCCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL-----------------RWQVIDTPGILDHS 299 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTPG~~~~~ 299 (358)
....|++||.||||||||+|+|++.++.++++||||++++.+.+.+.+. +++++||||+....
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 5678999999999999999999999999999999999999999877633 48999999998654
Q ss_pred cchHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 300 ~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
... ..+...+...+++. |+++||+|+++
T Consensus 100 ~~g-~gLg~~fL~~Ir~a-D~il~VVd~f~ 127 (390)
T PTZ00258 100 SEG-EGLGNAFLSHIRAV-DGIYHVVRAFE 127 (390)
T ss_pred cch-hHHHHHHHHHHHHC-CEEEEEEeCCC
Confidence 433 22344556666776 99999999864
No 35
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=3.4e-14 Score=143.08 Aligned_cols=113 Identities=25% Similarity=0.251 Sum_probs=85.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
++|+++|.||||||||+|+|++.+. .+++.|++|++...+...+++..+.+|||||+.+........+..++..++...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999875 478899999999999999999999999999998633222233444455566666
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
|++++|+|+++...........++.. . ++|+++|
T Consensus 82 -d~il~vvd~~~~~~~~~~~~~~~l~~---~--~~piilv 115 (435)
T PRK00093 82 -DVILFVVDGRAGLTPADEEIAKILRK---S--NKPVILV 115 (435)
T ss_pred -CEEEEEEECCCCCCHHHHHHHHHHHH---c--CCcEEEE
Confidence 99999999988544333333344443 2 6888886
No 36
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.56 E-value=6.1e-14 Score=134.11 Aligned_cols=130 Identities=18% Similarity=0.233 Sum_probs=83.1
Q ss_pred HHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHH
Q psy15712 226 QHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRN 304 (358)
Q Consensus 226 ~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~ 304 (358)
..+.+++..+....+|+++|.+||||||++|+|+|.++ .+++...+|.........++|.++.+|||||+.+.......
T Consensus 26 ~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~ 105 (313)
T TIGR00991 26 ELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQ 105 (313)
T ss_pred HHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHH
Confidence 33445666667788999999999999999999999886 46666666665555555678889999999999875322222
Q ss_pred HHHHHHHHHH-hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCC---CCeEEEeC
Q psy15712 305 IIEMQAVTAL-AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFN---NKVGPLEY 358 (358)
Q Consensus 305 ~ie~~~~~~l-~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~---~kPvilvf 358 (358)
..+ ....++ ....|++|||..++....... ...+++.+...|. .++.|+||
T Consensus 106 ~~~-~ik~~l~~~g~DvVLyV~rLD~~R~~~~--DkqlLk~Iqe~FG~~iw~~~IVVf 160 (313)
T TIGR00991 106 AVN-IIKRFLLGKTIDVLLYVDRLDAYRVDTL--DGQVIRAITDSFGKDIWRKSLVVL 160 (313)
T ss_pred HHH-HHHHHhhcCCCCEEEEEeccCcccCCHH--HHHHHHHHHHHhhhhhhccEEEEE
Confidence 211 111112 223599999976554322212 2334444444442 35677765
No 37
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.55 E-value=1.7e-14 Score=125.78 Aligned_cols=114 Identities=29% Similarity=0.388 Sum_probs=79.3
Q ss_pred EecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec-CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEE
Q psy15712 243 ICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK-YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAV 321 (358)
Q Consensus 243 lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~i 321 (358)
++|.+|||||||+|+|++....+++++++|.++..+.+.++ +..+++|||||+.+.......... .....+... |++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~-~~~~~~~~~-d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGN-QFLAHIRRA-DAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccH-HHHHHHhcc-CEE
Confidence 58999999999999999988777889999999998888888 889999999998653222111111 122334444 999
Q ss_pred EEEEeCCCCC----CCCHHHHHHHHHHHccc--------CCCCeEEEeC
Q psy15712 322 LYFIDISEQC----GHSIQEQIGLFKSIRPL--------FNNKVGPLEY 358 (358)
Q Consensus 322 L~VvD~s~~~----~~~~~~q~~ll~~i~~~--------f~~kPvilvf 358 (358)
++|+|+++.. +....+...+..++... ..++|+++|+
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 127 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVL 127 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEE
Confidence 9999998863 13333333344444321 2368988873
No 38
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.55 E-value=3.9e-14 Score=145.52 Aligned_cols=112 Identities=22% Similarity=0.279 Sum_probs=90.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh-h
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA-H 316 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~-~ 316 (358)
..+|+++|.||||||||+|+|||.+..+++||++|.+-..|.+.+.+.+++++|+||..+-.....+ |..+..++. +
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D--E~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED--EKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch--HHHHHHHHhcC
Confidence 3469999999999999999999999999999999999999999999999999999999865332222 334555665 4
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
.+|+++.|+|+++ ++..+.+.-++.+. ++|+++++
T Consensus 81 ~~D~ivnVvDAtn-----LeRnLyltlQLlE~--g~p~ilaL 115 (653)
T COG0370 81 KPDLIVNVVDATN-----LERNLYLTLQLLEL--GIPMILAL 115 (653)
T ss_pred CCCEEEEEcccch-----HHHHHHHHHHHHHc--CCCeEEEe
Confidence 5799999999886 55666666666555 78888763
No 39
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.55 E-value=6.3e-14 Score=119.61 Aligned_cols=111 Identities=26% Similarity=0.258 Sum_probs=78.0
Q ss_pred EEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccE
Q psy15712 242 IICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAA 320 (358)
Q Consensus 242 ~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~ 320 (358)
+++|.+|||||||+|+|++... .+++.+++|.+.......+.+..+.+|||||+.+........+...+...+... |+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~-d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEA-DV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC-CE
Confidence 4789999999999999999874 467788999988888888888899999999997653311122222333445555 99
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 321 VLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 321 iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
+++|+|+++....... .++..++.. ++|+++|+
T Consensus 80 ii~v~d~~~~~~~~~~---~~~~~~~~~--~~piiiv~ 112 (157)
T cd01894 80 ILFVVDGREGLTPADE---EIAKYLRKS--KKPVILVV 112 (157)
T ss_pred EEEEEeccccCCccHH---HHHHHHHhc--CCCEEEEE
Confidence 9999999875433322 233333332 57888763
No 40
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.55 E-value=5.7e-14 Score=137.40 Aligned_cols=89 Identities=24% Similarity=0.351 Sum_probs=73.3
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc-----------------eEEEEeCCCCCCCCcc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL-----------------RWQVIDTPGILDHSLE 301 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTPG~~~~~~~ 301 (358)
.+|++||.||||||||+|+|++.++.++++||||.++..|.+.+.+. +++++||||+......
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 57999999999999999999999988999999999999998877653 4899999999865443
Q ss_pred hHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 302 DRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 302 ~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
. ..+...+...+++. |+++||+|++.
T Consensus 83 g-~glg~~fL~~i~~a-D~li~VVd~f~ 108 (364)
T PRK09601 83 G-EGLGNQFLANIREV-DAIVHVVRCFE 108 (364)
T ss_pred H-HHHHHHHHHHHHhC-CEEEEEEeCCc
Confidence 3 22334455566666 99999999974
No 41
>KOG1191|consensus
Probab=99.53 E-value=6.7e-14 Score=138.51 Aligned_cols=110 Identities=25% Similarity=0.270 Sum_probs=85.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHH-HHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNII-EMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~i-e~~~~~~l 314 (358)
....|+++|.||||||||+|+|++.+. -|++.|+||+|.....++.+|.++.|+||+|+.....+.-+.+ -+++...+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 357899999999999999999999886 5999999999999999999999999999999987222211111 12355566
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRP 347 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~ 347 (358)
... |++++|+|+......+...+.+.++....
T Consensus 347 ~~a-dvi~~vvda~~~~t~sd~~i~~~l~~~~~ 378 (531)
T KOG1191|consen 347 ERA-DVILLVVDAEESDTESDLKIARILETEGV 378 (531)
T ss_pred hhc-CEEEEEecccccccccchHHHHHHHHhcc
Confidence 666 99999999965445555566777776643
No 42
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.53 E-value=3e-14 Score=135.75 Aligned_cols=115 Identities=24% Similarity=0.371 Sum_probs=87.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe-cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc-
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY-KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL- 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~- 317 (358)
-|++||+||||||||+++++.+++.+++|||||..+..|.+.. .+.++.+-|.||++....+... +....|+|+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~G----LG~~FLrHIE 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVG----LGLRFLRHIE 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCC----ccHHHHHHHH
Confidence 4789999999999999999999999999999999999999886 4557999999999987655432 133345544
Q ss_pred -ccEEEEEEeCCCCCCCCHHHHHH-HHHHHc---ccCCCCeEEEeC
Q psy15712 318 -RAAVLYFIDISEQCGHSIQEQIG-LFKSIR---PLFNNKVGPLEY 358 (358)
Q Consensus 318 -~d~iL~VvD~s~~~~~~~~~q~~-ll~~i~---~~f~~kPvilvf 358 (358)
..+++||+|++.....+..++++ +..++. +.+.+||.+||+
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~ 282 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVL 282 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEE
Confidence 27899999999866443333333 334443 456789998874
No 43
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.53 E-value=1.8e-13 Score=116.64 Aligned_cols=112 Identities=29% Similarity=0.275 Sum_probs=79.5
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
.+|+++|.+|+|||||+|+|++... .+.+.+++|.+.....+.+.+.++.+|||||+.+................+...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 4799999999999999999998875 467788999998888888888899999999997654321111112233344444
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
|++++|+|+++...... ...+.. ..++|+++|+
T Consensus 82 -~~~v~v~d~~~~~~~~~---~~~~~~----~~~~~vi~v~ 114 (157)
T cd04164 82 -DLVLFVIDASRGLDEED---LEILEL----PADKPIIVVL 114 (157)
T ss_pred -CEEEEEEECCCCCCHHH---HHHHHh----hcCCCEEEEE
Confidence 99999999997443322 223322 2368888873
No 44
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=1.5e-13 Score=122.83 Aligned_cols=114 Identities=19% Similarity=0.139 Sum_probs=84.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC--CcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCC--CcchHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD--VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH--SLEDRNIIEMQAVT 312 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~--~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~--~~~~~~~ie~~~~~ 312 (358)
..+-|+++|.+|||||||||+|++.+ ..++..|+.|+.++.-.+. + .+.++|.||++-. +.+..+.+......
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~--~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD--D-ELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec--C-cEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 56789999999999999999999977 5699999999988765443 2 4889999999855 44455566666666
Q ss_pred HHhhcc--cEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 313 ALAHLR--AAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 313 ~l~~~~--d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
++..-. .++++++|+.+.....+.+.++++... +.|+++++
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~ 142 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVL 142 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEE
Confidence 665433 578999999886655444444444443 77888774
No 45
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.52 E-value=7.7e-14 Score=119.53 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=76.4
Q ss_pred EecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc-hHHHHHHHHHHHHh-hcccE
Q psy15712 243 ICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE-DRNIIEMQAVTALA-HLRAA 320 (358)
Q Consensus 243 lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~-~~~~ie~~~~~~l~-~~~d~ 320 (358)
++|.+|||||||+|++++....++.++++|.+.....+.+.+..+.+|||||+.+.... ....+ ...++. +..|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~---~~~~~~~~~~d~ 77 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKV---ARDFLLGEKPDL 77 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHH---HHHHhcCCCCcE
Confidence 58999999999999999988778889999999988888888889999999999754321 11112 222332 33499
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 321 VLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 321 iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
+++|+|+++.. ....++..+... ++|+++|+
T Consensus 78 vi~v~d~~~~~-----~~~~~~~~~~~~--~~~~iiv~ 108 (158)
T cd01879 78 IVNVVDATNLE-----RNLYLTLQLLEL--GLPVVVAL 108 (158)
T ss_pred EEEEeeCCcch-----hHHHHHHHHHHc--CCCEEEEE
Confidence 99999998732 122344444332 68888863
No 46
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.52 E-value=1.9e-13 Score=145.79 Aligned_cols=117 Identities=21% Similarity=0.194 Sum_probs=87.9
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...++|+++|.||||||||+|+|++.+. .+++.|++|++.......+.+..+.+|||||+..........+..++..++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 3457899999999999999999999875 478899999999998888989999999999987433222233444555666
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
... |++|||+|++....... ..+...++.. ++|+|+|.
T Consensus 353 ~~a-D~iL~VvDa~~~~~~~d---~~i~~~Lr~~--~~pvIlV~ 390 (712)
T PRK09518 353 SLA-DAVVFVVDGQVGLTSTD---ERIVRMLRRA--GKPVVLAV 390 (712)
T ss_pred HhC-CEEEEEEECCCCCCHHH---HHHHHHHHhc--CCCEEEEE
Confidence 666 99999999987433222 2344444443 78999873
No 47
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.52 E-value=2e-13 Score=127.95 Aligned_cols=119 Identities=23% Similarity=0.315 Sum_probs=79.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcch---HHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLED---RNIIEMQAVT 312 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~---~~~ie~~~~~ 312 (358)
...+|+++|.+|||||||+|+|+|... .++.++.+|.........+++..+.+|||||+.+..... ...++ ....
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~-~I~~ 108 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILS-SIKR 108 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHH-HHHH
Confidence 567999999999999999999999875 577777788888877777888899999999998764321 11121 1222
Q ss_pred HHhh-cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCC---CCeEEEeC
Q psy15712 313 ALAH-LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFN---NKVGPLEY 358 (358)
Q Consensus 313 ~l~~-~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~---~kPvilvf 358 (358)
++.. ..+++|||..++... ... ....+++.|...|. -+++++||
T Consensus 109 ~l~~~~idvIL~V~rlD~~r-~~~-~d~~llk~I~e~fG~~i~~~~ivV~ 156 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMYR-RDY-LDLPLLRAITDSFGPSIWRNAIVVL 156 (249)
T ss_pred HHhccCCCEEEEEEcCCCCC-CCH-HHHHHHHHHHHHhChhhHhCEEEEE
Confidence 3332 248899997766532 212 22345555444332 24666664
No 48
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.51 E-value=2.8e-13 Score=116.74 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=78.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||+|+|++.++..+..+++|.+.....+.+++. .+++|||||... ........+.+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~--------~~~~~~~~~~~~ 73 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER--------FRSLIPSYIRDS 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH--------HHHHHHHHhccC
Confidence 6899999999999999999999887777888888888877777664 578999999632 122233344555
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
|++++|+|++++.++ .....++..+.... .+.|++++
T Consensus 74 -~~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv 111 (161)
T cd01861 74 -SVAVVVYDITNRQSF--DNTDKWIDDVRDERGNDVIIVLV 111 (161)
T ss_pred -CEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEE
Confidence 999999999885543 33445666654332 25888886
No 49
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.51 E-value=1.4e-13 Score=127.73 Aligned_cols=89 Identities=29% Similarity=0.527 Sum_probs=72.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
+|+++|.||+|||||+|+|++....+++++|+|.++..+.+.+++..+++|||||+.+...... .+..+....+++. |
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~l~~~~~a-d 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK-GRGRQVIAVARTA-D 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccch-hHHHHHHHhhccC-C
Confidence 5899999999999999999999888899999999999999999999999999999876532222 1223344455555 9
Q ss_pred EEEEEEeCCCC
Q psy15712 320 AVLYFIDISEQ 330 (358)
Q Consensus 320 ~iL~VvD~s~~ 330 (358)
++++|+|++++
T Consensus 80 ~il~V~D~t~~ 90 (233)
T cd01896 80 LILMVLDATKP 90 (233)
T ss_pred EEEEEecCCcc
Confidence 99999999863
No 50
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.51 E-value=1.7e-13 Score=132.57 Aligned_cols=87 Identities=32% Similarity=0.473 Sum_probs=69.9
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe------------------------cCceEEEEeCCCCC
Q psy15712 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY------------------------KYLRWQVIDTPGIL 296 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~------------------------~~~~~~liDTPG~~ 296 (358)
|+++|.||||||||+|+|++....++++||||.+++.+...+ .+..+++|||||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999999999999999999999876654 22478999999997
Q ss_pred CCCcchHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 297 DHSLEDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 297 ~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
....... .+..+++..+++. |++++|+|+++
T Consensus 81 ~ga~~~~-glg~~fL~~ir~a-D~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGK-GLGNKFLDDLRDA-DALIHVVDASG 111 (318)
T ss_pred CCccchh-hHHHHHHHHHHHC-CEEEEEEeCCC
Confidence 6543332 2333455667777 99999999985
No 51
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.51 E-value=4.4e-13 Score=114.59 Aligned_cols=114 Identities=26% Similarity=0.321 Sum_probs=76.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
..+|+++|.+|+|||||+|+|++..+. +.+.+.+|+..........+..+.+|||||+..........+.......+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999998753 5566677777766666666678999999999765432222222223333444
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
. |++++|+|+++........ ++..+... +.|+++|
T Consensus 83 ~-d~i~~v~d~~~~~~~~~~~---~~~~~~~~--~~~~iiv 117 (168)
T cd04163 83 V-DLVLFVVDASEPIGEGDEF---ILELLKKS--KTPVILV 117 (168)
T ss_pred C-CEEEEEEECCCccCchHHH---HHHHHHHh--CCCEEEE
Confidence 4 9999999999864333322 23333222 4677765
No 52
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.50 E-value=2.1e-13 Score=135.70 Aligned_cols=89 Identities=35% Similarity=0.490 Sum_probs=70.7
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe------------------------cCceEEEEeCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY------------------------KYLRWQVIDTPG 294 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~------------------------~~~~~~liDTPG 294 (358)
.+|++||.||||||||+|+|++.++.+++|||||.+++.|.... ....++++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 47999999999999999999999998999999999999886542 124578999999
Q ss_pred CCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 295 ILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 295 ~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
+........ .+...++..+++. |++++|+|++.
T Consensus 82 l~~ga~~g~-glg~~fL~~ir~a-d~ll~Vvd~~~ 114 (396)
T PRK09602 82 LVPGAHEGR-GLGNQFLDDLRQA-DALIHVVDASG 114 (396)
T ss_pred cCCCccchh-hHHHHHHHHHHHC-CEEEEEEeCCC
Confidence 986543322 2333455667776 99999999984
No 53
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.50 E-value=3.7e-13 Score=115.82 Aligned_cols=105 Identities=18% Similarity=0.170 Sum_probs=68.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC---cccCCCcceeeeEEEEEEec-CceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADV---DVQPYAFTTKSLYVGHTDYK-YLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~---~v~~~~~tT~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
+|+++|.+|||||||+|+|++... .....+++|.+.....+.+. +..+++|||||..+ .......++.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~--------~~~~~~~~~~ 73 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK--------FIKNMLAGAG 73 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH--------HHHHHHhhhh
Confidence 689999999999999999997542 22234567877777667766 77899999999731 1112223344
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
. +|++++|+|+++.......+.+..+... ..+|++++
T Consensus 74 ~-ad~ii~V~d~~~~~~~~~~~~~~~~~~~----~~~~~ilv 110 (164)
T cd04171 74 G-IDLVLLVVAADEGIMPQTREHLEILELL----GIKRGLVV 110 (164)
T ss_pred c-CCEEEEEEECCCCccHhHHHHHHHHHHh----CCCcEEEE
Confidence 4 4999999999863322222223333222 23477776
No 54
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.50 E-value=4.1e-13 Score=136.88 Aligned_cols=115 Identities=23% Similarity=0.285 Sum_probs=84.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcch--HHHHH-HHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLED--RNIIE-MQAVT 312 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~--~~~ie-~~~~~ 312 (358)
..++|+++|.||||||||+|+|++... .+++.++||.+.....+.+++..+.+|||||+....... .+.+. ..+..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 468999999999999999999999874 578899999999888888889999999999986542211 11111 11223
Q ss_pred HHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 313 ALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+++.. |++++|+|+++.... +.+.++..+... ++|+|+|
T Consensus 290 ~i~~a-d~vilV~Da~~~~s~---~~~~~~~~~~~~--~~piIiV 328 (472)
T PRK03003 290 AIEAA-EVAVVLIDASEPISE---QDQRVLSMVIEA--GRALVLA 328 (472)
T ss_pred HHhcC-CEEEEEEeCCCCCCH---HHHHHHHHHHHc--CCCEEEE
Confidence 44555 999999999985433 233455555443 7898887
No 55
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.49 E-value=5.7e-13 Score=115.11 Aligned_cols=114 Identities=25% Similarity=0.261 Sum_probs=79.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchH--HHHH-HHHHHH
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDR--NIIE-MQAVTA 313 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~--~~ie-~~~~~~ 313 (358)
..+|+++|.+|+|||||+|+|++... ...+.+++|.......+..++..+.+|||||+.+...... +... ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 45799999999999999999998774 4677888998888888888888999999999976532111 1111 122334
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+... |++++|+|++++..... ..++..+... ++|++++
T Consensus 82 ~~~~-d~vi~v~d~~~~~~~~~---~~~~~~~~~~--~~~~iiv 119 (174)
T cd01895 82 IERA-DVVLLVIDATEGITEQD---LRIAGLILEE--GKALVIV 119 (174)
T ss_pred Hhhc-CeEEEEEeCCCCcchhH---HHHHHHHHhc--CCCEEEE
Confidence 4444 99999999988655322 2333333222 5788776
No 56
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.49 E-value=4.2e-13 Score=116.25 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=71.4
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec---CceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK---YLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
|+|+++|.+|+|||||+|+|++..+.....+++|.+.....+... +..+.+|||||... ........+.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~~~~~~~~ 72 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA--------FTNMRARGAS 72 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH--------HHHHHHHHHh
Confidence 479999999999999999999887665556677777665566554 66899999999732 1111222333
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
. +|++++|+|+++...... ...+..+.. .++|+++|
T Consensus 73 ~-~d~il~v~d~~~~~~~~~---~~~~~~~~~--~~~p~ivv 108 (168)
T cd01887 73 L-TDIAILVVAADDGVMPQT---IEAIKLAKA--ANVPFIVA 108 (168)
T ss_pred h-cCEEEEEEECCCCccHHH---HHHHHHHHH--cCCCEEEE
Confidence 3 499999999987542222 223333332 26788876
No 57
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.48 E-value=4.4e-13 Score=121.32 Aligned_cols=115 Identities=13% Similarity=0.092 Sum_probs=74.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||++++++.+......|+++.+.....+.+++. .+++|||||....+......+......++...
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 6899999999999999999987765444555555554445556664 67899999986544322222222233445554
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHccc----CCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPL----FNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~----f~~kPvilv 357 (358)
|++++|+|++++.. .+....++..+... ..+.|+++|
T Consensus 82 -d~iilv~D~~~~~S--~~~~~~~~~~i~~~~~~~~~~~piiiv 122 (198)
T cd04142 82 -RAFILVYDICSPDS--FHYVKLLRQQILETRPAGNKEPPIVVV 122 (198)
T ss_pred -CEEEEEEECCCHHH--HHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 99999999988543 33333344444332 246898886
No 58
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.46 E-value=1.3e-12 Score=115.72 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=75.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC--CcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc--hHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD--VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE--DRNIIEMQAVT 312 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~--~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~--~~~~ie~~~~~ 312 (358)
+.+.|+++|.+|+|||||+|+|++.. ..+++.+++|.++..... + ..+.+|||||+...... .+..+......
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 56799999999999999999999875 346778888887665433 2 47999999998654322 22223322333
Q ss_pred HHhhc--ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 313 ALAHL--RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 313 ~l~~~--~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
+++.. .+++++|+|++++...... .++..+... ++|+++++
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~~---~~~~~~~~~--~~pviiv~ 136 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELDL---EMLEWLRER--GIPVLIVL 136 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHHH---HHHHHHHHc--CCCEEEEE
Confidence 44432 3789999999875433222 333333332 68888763
No 59
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.45 E-value=1.5e-12 Score=112.82 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=76.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|++++.+......|+++.+.....+..++. .+++|||||... ........+.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~ 74 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER--------YRAITSAYYR 74 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH--------HHHHHHHHHC
Confidence 357999999999999999999988876666677666666666666664 678999999732 2222333444
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCC-CCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFN-NKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~-~kPvilv 357 (358)
.. +++++|+|+++... ......++..+..... +.|+++|
T Consensus 75 ~~-~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~pi~vv 114 (165)
T cd01868 75 GA-VGALLVYDITKKQT--FENVERWLKELRDHADSNIVIMLV 114 (165)
T ss_pred CC-CEEEEEEECcCHHH--HHHHHHHHHHHHHhCCCCCeEEEE
Confidence 44 99999999997543 3333456666554332 5888876
No 60
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.45 E-value=2.2e-12 Score=129.58 Aligned_cols=114 Identities=25% Similarity=0.224 Sum_probs=84.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHH----HHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEM----QAV 311 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~----~~~ 311 (358)
...+|+++|.||+|||||+|+|++... .+++.++||.+.....+.+++..+.+|||||+.+..... ..++. .+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~-~~~e~~~~~~~~ 249 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVT-EGVEKYSVLRTL 249 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccch-hhHHHHHHHHHH
Confidence 457899999999999999999998774 578899999999888888888899999999997654321 11222 233
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.++... |++++|+|++++... . ...++..+... ++|+++|
T Consensus 250 ~~~~~a-d~~ilV~D~~~~~~~--~-~~~~~~~~~~~--~~~iiiv 289 (429)
T TIGR03594 250 KAIERA-DVVLLVLDATEGITE--Q-DLRIAGLILEA--GKALVIV 289 (429)
T ss_pred HHHHhC-CEEEEEEECCCCccH--H-HHHHHHHHHHc--CCcEEEE
Confidence 455555 999999999975432 2 23444444333 6888886
No 61
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.44 E-value=1.6e-12 Score=131.04 Aligned_cols=114 Identities=25% Similarity=0.243 Sum_probs=84.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC-CcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHH----HHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEM----QAV 311 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~----~~~ 311 (358)
...+|+++|.||+|||||+|+|++.. ..+++.+++|++.....+.+++..+.+|||||+........ .++. .+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~-~~e~~~~~~~~ 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTE-GVEKYSVIRTL 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhh-HHHHHHHHHHH
Confidence 46899999999999999999999877 45788999999998888888888999999999976543221 1222 233
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.++... |++++|+|++.+.... ...++..+... ++|++++
T Consensus 251 ~~~~~a-d~~ilViD~~~~~~~~---~~~i~~~~~~~--~~~~ivv 290 (435)
T PRK00093 251 KAIERA-DVVLLVIDATEGITEQ---DLRIAGLALEA--GRALVIV 290 (435)
T ss_pred HHHHHC-CEEEEEEeCCCCCCHH---HHHHHHHHHHc--CCcEEEE
Confidence 455555 9999999999854332 23344443332 6788876
No 62
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.44 E-value=1.8e-12 Score=112.59 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=73.3
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||++++.+........++.+.+.....+..++. .+++|||||... ........++.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~ 74 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER--------FRTITSSYYRG 74 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh--------HHHHHHHHhCc
Confidence 57999999999999999999987765544455555555555555554 679999999632 22222334444
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
. |++++|+|+++.. +......++..+.... .+.|++++
T Consensus 75 ~-~~ii~v~d~~~~~--s~~~l~~~~~~~~~~~~~~~~~iiv 113 (166)
T cd01869 75 A-HGIIIVYDVTDQE--SFNNVKQWLQEIDRYASENVNKLLV 113 (166)
T ss_pred C-CEEEEEEECcCHH--HHHhHHHHHHHHHHhCCCCCcEEEE
Confidence 4 9999999998854 3444445666665432 35788876
No 63
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.44 E-value=1e-12 Score=120.24 Aligned_cols=118 Identities=23% Similarity=0.165 Sum_probs=74.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCc-cc-CCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHH--HHHh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVD-VQ-PYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAV--TALA 315 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~-v~-~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~--~~l~ 315 (358)
+|+++|.+|+||||++|.|+|.... .+ ....+|..+......++|..+.||||||+.+.............. ....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 6999999999999999999998864 22 234567888888888999999999999998876654433332221 1123
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
..++++|+|+.++ .........++.+..+.+.-..+.+||||
T Consensus 82 ~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvf 123 (212)
T PF04548_consen 82 PGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVF 123 (212)
T ss_dssp T-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred CCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHh
Confidence 3468999999987 44433444555555544321235677765
No 64
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.43 E-value=2.2e-12 Score=112.71 Aligned_cols=109 Identities=18% Similarity=0.097 Sum_probs=73.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|++++..+.....++.+.+.....+..++ ..+.+|||||.. .+......+++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~ 75 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE--------SFRSITRSYYR 75 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH--------HHHHHHHHHhc
Confidence 36899999999999999999998876544444444555444455554 467899999952 12222334455
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
.. |++++|+|++++. +......|+.+++.. ..+.|+++|
T Consensus 76 ~~-d~il~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~pvivv 115 (168)
T cd01866 76 GA-AGALLVYDITRRE--TFNHLTSWLEDARQHSNSNMTIMLI 115 (168)
T ss_pred cC-CEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 54 9999999998743 344445567666542 246888876
No 65
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.42 E-value=1.4e-12 Score=139.38 Aligned_cols=113 Identities=20% Similarity=0.191 Sum_probs=83.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc-hH-HHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE-DR-NIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~-~~-~~ie~~~~~~l~ 315 (358)
..+|+++|.||||||||+|+|+|.+..++++|++|.+...+.+.+++.++.++||||+.+.... .. ..-|..+..++.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~ 82 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHh
Confidence 3579999999999999999999998889999999999999999988899999999999764221 10 111222223332
Q ss_pred -hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 -HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 -~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+.+|++++|+|+++. ++.+.+..++.+. ++|++++
T Consensus 83 ~~~aD~vI~VvDat~l-----er~l~l~~ql~e~--giPvIvV 118 (772)
T PRK09554 83 SGDADLLINVVDASNL-----ERNLYLTLQLLEL--GIPCIVA 118 (772)
T ss_pred ccCCCEEEEEecCCcc-----hhhHHHHHHHHHc--CCCEEEE
Confidence 335999999999873 2334455555444 7898876
No 66
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.42 E-value=2.4e-12 Score=137.38 Aligned_cols=116 Identities=23% Similarity=0.304 Sum_probs=85.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchH--HHHH-HHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDR--NIIE-MQAVT 312 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~--~~ie-~~~~~ 312 (358)
..++|+++|.||||||||+|+|++.+. .++++++||++.....+.+++..+.+|||||+........ +... ..+..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 457999999999999999999999885 4788999999999888889999999999999875432221 1111 12234
Q ss_pred HHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 313 ALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
++... |++++|+|+++.... +...++..+... ++|+++|.
T Consensus 529 ~i~~a-dvvilViDat~~~s~---~~~~i~~~~~~~--~~piIiV~ 568 (712)
T PRK09518 529 AIERS-ELALFLFDASQPISE---QDLKVMSMAVDA--GRALVLVF 568 (712)
T ss_pred HhhcC-CEEEEEEECCCCCCH---HHHHHHHHHHHc--CCCEEEEE
Confidence 45555 999999999986543 224455555433 78998873
No 67
>KOG1423|consensus
Probab=99.42 E-value=1.6e-12 Score=122.15 Aligned_cols=108 Identities=21% Similarity=0.288 Sum_probs=81.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHH----HH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQ----AV 311 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~----~~ 311 (358)
....|+++|.||||||||.|.+.|.++ .++....||+....+.+.-+..++.+.||||++.....-+...++. ..
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 456899999999999999999999997 4899999999999999988888999999999997655443333332 23
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHH
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSI 345 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i 345 (358)
.++.+. |+|+.|+|++.+..+---..+..+...
T Consensus 151 ~a~q~A-D~vvVv~Das~tr~~l~p~vl~~l~~y 183 (379)
T KOG1423|consen 151 DAAQNA-DCVVVVVDASATRTPLHPRVLHMLEEY 183 (379)
T ss_pred HHHhhC-CEEEEEEeccCCcCccChHHHHHHHHH
Confidence 455555 999999999964332222334444443
No 68
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=7.3e-13 Score=128.28 Aligned_cols=90 Identities=22% Similarity=0.369 Sum_probs=74.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec------------------CceEEEEeCCCCCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK------------------YLRWQVIDTPGILDHS 299 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~------------------~~~~~liDTPG~~~~~ 299 (358)
..++++||.||||||||+|+||...+.+++|||||.++..|..... ...+.++|.+|+....
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3579999999999999999999999889999999999999987642 1257899999999876
Q ss_pred cchHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 300 ~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
...+. +--+.+.-+++. |+|++|+|+++
T Consensus 82 s~GeG-LGNkFL~~IRev-daI~hVVr~f~ 109 (372)
T COG0012 82 SKGEG-LGNKFLDNIREV-DAIIHVVRCFG 109 (372)
T ss_pred ccCCC-cchHHHHhhhhc-CeEEEEEEecC
Confidence 55432 233466777887 99999999995
No 69
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.41 E-value=3.8e-12 Score=109.65 Aligned_cols=107 Identities=21% Similarity=0.199 Sum_probs=73.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|+|||||++++++........+..+.+.....+.+++ ..+++|||||.. .........+.+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~~~ 73 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE--------RFRSITSSYYRGA 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH--------HHHHHHHHHhCCC
Confidence 689999999999999999998877555555555555555566665 467899999962 2223334455555
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
|++++|+|++++... +....++..+.... .+.|++++
T Consensus 74 -d~~ilv~d~~~~~s~--~~~~~~l~~~~~~~~~~~pivvv 111 (164)
T smart00175 74 -VGALLVYDITNRESF--ENLKNWLKELREYADPNVVIMLV 111 (164)
T ss_pred -CEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEE
Confidence 999999999885443 33334555543321 46888886
No 70
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.41 E-value=4e-12 Score=109.65 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=69.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||+|+|++........|..+.+.....+..++ ..+++|||||... ........+...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~~~ 73 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE--------YLEVRNEFYKDT 73 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHH--------HHHHHHHHhccC
Confidence 689999999999999999999876544444444444444444444 4678999999831 112222344444
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC------CCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF------NNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f------~~kPvilv 357 (358)
|++++|+|++++.. .+....++..+.... .+.|+++|
T Consensus 74 -d~~ilv~D~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~~piilv 116 (168)
T cd04119 74 -QGVLLVYDVTDRQS--FEALDSWLKEMKQEGGPHGNMENIVVVVC 116 (168)
T ss_pred -CEEEEEEECCCHHH--HHhHHHHHHHHHHhccccccCCCceEEEE
Confidence 99999999998543 233344555544322 35788876
No 71
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.40 E-value=4.5e-12 Score=110.55 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=72.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|++++.++.....|+.+.+.....+.+++. .+++|||||... ........+.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~~~~ 74 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER--------FRTITTAYYR 74 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH--------HHHHHHHHhC
Confidence 468999999999999999999988765444444444444444555554 678999999632 2222334455
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
+. |++++|+|+++... ......++..+.... .+.|+++|
T Consensus 75 ~a-d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv 114 (167)
T cd01867 75 GA-MGIILVYDITDEKS--FENIRNWMRNIEEHASEDVERMLV 114 (167)
T ss_pred CC-CEEEEEEECcCHHH--HHhHHHHHHHHHHhCCCCCcEEEE
Confidence 55 99999999987443 333445666554422 35787776
No 72
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.40 E-value=4.4e-12 Score=110.18 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=69.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||++++.+........+....+........++. .+++|||||... .......++.+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~~ 73 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER--------FQTMHASYYHKA 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHHHhCCC
Confidence 6899999999999999999987654322222222222223334433 678999999742 222233455555
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
|++++|+|++++.. ......++..++....+.|+++|
T Consensus 74 -d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~p~ivv 110 (161)
T cd04124 74 -HACILVFDVTRKIT--YKNLSKWYEELREYRPEIPCIVV 110 (161)
T ss_pred -CEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCcEEEE
Confidence 99999999987543 23334566666554457898886
No 73
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.40 E-value=2.6e-12 Score=111.43 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=71.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCc----ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVD----VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~----v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
+|+++|.+|||||||+|+|++.... ......+|.+...+.+.+++..+++|||||... +.......+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~ 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES--------LRSLWDKYYA 72 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh--------hHHHHHHHhC
Confidence 4899999999999999999875432 112234566666777888888999999999842 1112233444
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
.. |++++|+|+++.. +......++..+.. ...+.|++++
T Consensus 73 ~~-~~~v~vvd~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv 113 (167)
T cd04160 73 EC-HAIIYVIDSTDRE--RFEESKSALEKVLRNEALEGVPLLIL 113 (167)
T ss_pred CC-CEEEEEEECchHH--HHHHHHHHHHHHHhChhhcCCCEEEE
Confidence 44 9999999998743 23333344444432 1246898886
No 74
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.40 E-value=4.5e-12 Score=109.24 Aligned_cols=107 Identities=13% Similarity=0.104 Sum_probs=71.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec----CceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK----YLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~----~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
+|+++|.+|+|||||+|++++........++.+.+.....+.+. ...+++|||||.. ........+++
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~ 73 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE--------EFDAITKAYYR 73 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH--------HHHHhHHHHhc
Confidence 68999999999999999999876543333444444444444444 3478999999962 12223334555
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.. |++++|+|++++.+ ......++..+.....+.|+++|
T Consensus 74 ~~-~~~v~v~d~~~~~s--~~~l~~~~~~~~~~~~~~p~iiv 112 (162)
T cd04106 74 GA-QACILVFSTTDRES--FEAIESWKEKVEAECGDIPMVLV 112 (162)
T ss_pred CC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCEEEE
Confidence 54 99999999987543 33444555555544557898886
No 75
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.39 E-value=6e-12 Score=106.70 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=71.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec--CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK--YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||+|+|++........++.+.+.....+... ...+.+|||||... ........+.+.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~ 73 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER--------FRSITPSYYRGA 73 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH--------HHHHHHHHhcCC
Confidence 68999999999999999999888665444444444444444443 35788999999832 222344455665
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
|++++|+|++++.. ......++..+.... .++|++++
T Consensus 74 -d~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv 111 (159)
T cd00154 74 -HGAILVYDITNRES--FENLDKWLKELKEYAPENIPIILV 111 (159)
T ss_pred -CEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCcEEEE
Confidence 99999999988432 333344555554432 35788876
No 76
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.39 E-value=4.2e-12 Score=109.34 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=67.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
.|+++|.+|||||||+++|++.......+. .|.+.....+...+..+++|||||.... ......++... |
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~~~-d 70 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKGNLSFTAFDMSGQGKY--------RGLWEHYYKNI-Q 70 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEECCEEEEEEECCCCHhh--------HHHHHHHHccC-C
Confidence 378999999999999999998653322222 2333334445566778999999998421 12233445555 9
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHcc--cC--CCCeEEEeC
Q psy15712 320 AVLYFIDISEQCGHSIQEQIGLFKSIRP--LF--NNKVGPLEY 358 (358)
Q Consensus 320 ~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f--~~kPvilvf 358 (358)
++++|+|+++...+.. ...++..+.. .+ .++|+++|+
T Consensus 71 ~ii~v~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~iiv~ 111 (162)
T cd04157 71 GIIFVIDSSDRLRLVV--VKDELELLLNHPDIKHRRVPILFFA 111 (162)
T ss_pred EEEEEEeCCcHHHHHH--HHHHHHHHHcCcccccCCCCEEEEE
Confidence 9999999998553321 1223333322 11 368998874
No 77
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.39 E-value=7e-12 Score=108.99 Aligned_cols=107 Identities=16% Similarity=0.085 Sum_probs=69.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||+|++++........+..+.+.....+.+.+. .+.+|||||... ........++..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 73 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER--------FQSLGVAFYRGA 73 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH--------HHhHHHHHhcCC
Confidence 6899999999999999999988765433343344444445556554 456999999732 222334455555
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-----CCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-----FNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-----f~~kPvilv 357 (358)
|++++|+|++++.. .+....++..+... ..++|+++|
T Consensus 74 -d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ilv 115 (172)
T cd01862 74 -DCCVLVYDVTNPKS--FESLDSWRDEFLIQASPSDPENFPFVVL 115 (172)
T ss_pred -CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCccCCCCceEEEE
Confidence 99999999987543 23333444443322 236888876
No 78
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.38 E-value=7.2e-12 Score=108.14 Aligned_cols=107 Identities=19% Similarity=0.153 Sum_probs=70.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||+++|.+........+..+.+.....+..++ ..+++|||||... ........++..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~~~~ 73 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER--------FRSVTRSYYRGA 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHH--------HHHhHHHHhcCC
Confidence 689999999999999999998876544444444444444444444 3678999999732 222233444544
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
|++++|+|+++...+ .....++..+.... .+.|++++
T Consensus 74 -~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv 111 (161)
T cd04113 74 -AGALLVYDITNRTSF--EALPTWLSDARALASPNIVVILV 111 (161)
T ss_pred -CEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEE
Confidence 999999999985543 33344555554322 46888876
No 79
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.38 E-value=7.3e-12 Score=108.80 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=71.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|+|||||++++.+........+..+.+.....+.+++ ..+++|||||.. .........++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~~~~ 74 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE--------RFRTITQSYYR 74 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChH--------HHHHHHHHHhc
Confidence 46899999999999999999987765432223333344455566666 367899999962 12222334444
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
.. |++++|+|++++..+ +....++..+... -.+.|+++|
T Consensus 75 ~~-d~~llv~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv 114 (165)
T cd01864 75 SA-NGAIIAYDITRRSSF--ESVPHWIEEVEKYGASNVVLLLI 114 (165)
T ss_pred cC-CEEEEEEECcCHHHH--HhHHHHHHHHHHhCCCCCcEEEE
Confidence 44 999999999985433 3333456555432 236788776
No 80
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.38 E-value=7e-12 Score=109.13 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=69.7
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||+|+|++.++.....|+.+.+.....+..++ ..+++|||||... ........++.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~--------~~~~~~~~~~~ 73 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER--------YRTITTAYYRG 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH--------HHHHHHHHccC
Confidence 4799999999999999999998876433333333233323333333 4689999999732 22223344455
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
. |++++|+|+++.. +.+....++..+.... .+.|+++|
T Consensus 74 ~-~~~l~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piivv 112 (165)
T cd01865 74 A-MGFILMYDITNEE--SFNAVQDWSTQIKTYSWDNAQVILV 112 (165)
T ss_pred C-cEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 4 9999999998743 3444445666665432 36788776
No 81
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.38 E-value=6.9e-12 Score=108.19 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=70.5
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||+|++.+..+ +..++.++.+.......+++. .+++|||||..+. .......+..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~~ 73 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF--------SAMREQYMRT 73 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEEEEEEEEECCCCcch--------hHHHHHHHhh
Confidence 5799999999999999999997654 344455555444444555554 5789999997432 2222334555
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
. |++++|+|+++... ......++..+... ..+.|++++
T Consensus 74 ~-~~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piiiv 113 (164)
T cd04145 74 G-EGFLLVFSVTDRGS--FEEVDKFHTQILRVKDRDEFPMILV 113 (164)
T ss_pred C-CEEEEEEECCCHHH--HHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 4 99999999998543 33334455544332 236788876
No 82
>PRK04213 GTP-binding protein; Provisional
Probab=99.38 E-value=7.1e-12 Score=112.72 Aligned_cols=89 Identities=22% Similarity=0.207 Sum_probs=61.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCc-c--hHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL-E--DRNIIEMQAVTA 313 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~-~--~~~~ie~~~~~~ 313 (358)
..++|+++|.+|||||||+|+|++..+.++..|++|...... .++ .+++|||||+..... . ..+.+...+..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 457899999999999999999999887777888888775532 332 689999999743321 1 112232222233
Q ss_pred Hh---hcccEEEEEEeCCC
Q psy15712 314 LA---HLRAAVLYFIDISE 329 (358)
Q Consensus 314 l~---~~~d~iL~VvD~s~ 329 (358)
+. ...+++++|+|++.
T Consensus 84 ~~~~~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKS 102 (201)
T ss_pred HHhhhhhheEEEEEEeCcc
Confidence 33 12378999999875
No 83
>KOG1424|consensus
Probab=99.38 E-value=8e-13 Score=131.44 Aligned_cols=149 Identities=23% Similarity=0.245 Sum_probs=97.7
Q ss_pred HHHHHHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCChH------H---------HHHHHH------HHHH---
Q psy15712 150 ADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLY------R---------CKQLKK------AALG--- 205 (358)
Q Consensus 150 ~~ll~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~~------~---------~~~l~~------~~~g--- 205 (358)
.+|.+...+.+..|..++-||+|+++.+.....|..+++..+-.. . ..+-++ ...+
T Consensus 193 ~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~ 272 (562)
T KOG1424|consen 193 PDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIF 272 (562)
T ss_pred hhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhccccc
Confidence 366677778899999999999999999999999999886533100 0 000010 0111
Q ss_pred --hHHHHHHHHhhhhHHHHHHHHH-----hc---cCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCC-CcccCCCcceee
Q psy15712 206 --RMATIMKRQASNLEYLEQVRQH-----LS---RLPSIDPFTRTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKS 274 (358)
Q Consensus 206 --r~~~i~~~~~~~l~~l~~~~~~-----l~---~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~tT~~ 274 (358)
..-..+.+.......+..+.+. +. ..++..+ ..+|++||||||||||+||+|.|.+ +.|+..|+-|+.
T Consensus 273 ~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~-~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKH 351 (562)
T KOG1424|consen 273 VGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKD-VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKH 351 (562)
T ss_pred cccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCc-eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcce
Confidence 0000111111111122222222 11 1222222 5799999999999999999999987 689999999999
Q ss_pred eEEEEEEecCceEEEEeCCCCCCCCcch
Q psy15712 275 LYVGHTDYKYLRWQVIDTPGILDHSLED 302 (358)
Q Consensus 275 ~~~~~~~~~~~~~~liDTPG~~~~~~~~ 302 (358)
++.-.++ ..+.|+||||++.++...
T Consensus 352 FQTi~ls---~~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 352 FQTIFLS---PSVCLCDCPGLVFPSFSP 376 (562)
T ss_pred eEEEEcC---CCceecCCCCccccCCCc
Confidence 9987765 578999999999876544
No 84
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.37 E-value=8.2e-12 Score=107.03 Aligned_cols=108 Identities=14% Similarity=0.137 Sum_probs=70.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|+|||||+|++++........+.++.......+.+.+. .+.+|||||... ........+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~- 72 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER--------YHALGPIYYRD- 72 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHH--------HHHhhHHHhcc-
Confidence 6899999999999999999987765444444445555555555443 678999999632 12222233444
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCC-CCeEEEeC
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFN-NKVGPLEY 358 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~-~kPvilvf 358 (358)
+|++++|+|+++... .+....++.++..... ++|+++++
T Consensus 73 ~~~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piiiv~ 112 (162)
T cd04123 73 ADGAILVYDITDADS--FQKVKKWIKELKQMRGNNISLVIVG 112 (162)
T ss_pred CCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 499999999988543 3333345555544322 67888863
No 85
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.37 E-value=7.8e-12 Score=110.08 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=70.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCccc----------------CCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchH
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQ----------------PYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDR 303 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~----------------~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~ 303 (358)
+|+++|.+|+|||||+|+|++...... ...++|.........+.+..+.+|||||..+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 489999999999999999997664321 1234566666666677778999999999843
Q ss_pred HHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 304 NIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 304 ~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.......++... |++++|+|+++.......+ ++..+.. .++|++++
T Consensus 75 --~~~~~~~~~~~~-d~~i~v~d~~~~~~~~~~~---~~~~~~~--~~~~i~iv 120 (189)
T cd00881 75 --FSSEVIRGLSVS-DGAILVVDANEGVQPQTRE---HLRIARE--GGLPIIVA 120 (189)
T ss_pred --HHHHHHHHHHhc-CEEEEEEECCCCCcHHHHH---HHHHHHH--CCCCeEEE
Confidence 122234455555 9999999998865443333 3333322 36788876
No 86
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.36 E-value=9.7e-12 Score=112.20 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=73.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||++++.+..+.....|+.+.+.....+.+++. .+.+|||||... .......++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~ 76 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER--------FRTITSTYY 76 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchh--------HHHHHHHHh
Confidence 3578999999999999999999987754333343333444444555553 678999999732 112233445
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
... +++++|+|+++.. +.+....++..+.....+.|+++|
T Consensus 77 ~~a-~~iilv~D~~~~~--s~~~~~~~~~~i~~~~~~~piivV 116 (199)
T cd04110 77 RGT-HGVIVVYDVTNGE--SFVNVKRWLQEIEQNCDDVCKVLV 116 (199)
T ss_pred CCC-cEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCEEEE
Confidence 554 8999999998843 344445577777655556787775
No 87
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.36 E-value=1e-11 Score=113.42 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=71.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC---ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY---LRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~---~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
+|+++|.+|||||||+|+|++..+.....|+.+.+.....+.+.+ ..+++|||||... ........+..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~--------~~~l~~~~~~~ 73 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI--------GGKMLDKYIYG 73 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH--------HHHHHHHHhhc
Confidence 689999999999999999998876555556666666666666643 4779999999631 11122234444
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC----CCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF----NNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f----~~kPvilv 357 (358)
. |++++|+|++++.. .+....|+..+.... .+.|+++|
T Consensus 74 a-d~iilV~D~t~~~s--~~~~~~w~~~l~~~~~~~~~~~piilV 115 (215)
T cd04109 74 A-HAVFLVYDVTNSQS--FENLEDWYSMVRKVLKSSETQPLVVLV 115 (215)
T ss_pred C-CEEEEEEECCCHHH--HHHHHHHHHHHHHhccccCCCceEEEE
Confidence 4 99999999998543 333334555554322 23567766
No 88
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.35 E-value=1.2e-11 Score=108.71 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=71.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.+|||||||+++|+..... ...|+++ ............+++|||||... .......++..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g--~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~ 76 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKNVKFNVWDVGGQDK--------IRPLWRHYYTG 76 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcc--cceEEEEECCEEEEEEECCCCHH--------HHHHHHHHhcc
Confidence 4578999999999999999999865542 2233322 33334455667899999999842 22223344555
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEeC
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLEY 358 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilvf 358 (358)
. |+++||+|++++.. ..+..+++.++.. ...++|++||+
T Consensus 77 a-~~ii~v~D~t~~~s--~~~~~~~~~~~~~~~~~~~~piilv~ 117 (168)
T cd04149 77 T-QGLIFVVDSADRDR--IDEARQELHRIINDREMRDALLLVFA 117 (168)
T ss_pred C-CEEEEEEeCCchhh--HHHHHHHHHHHhcCHhhcCCcEEEEE
Confidence 5 99999999998653 3344445544432 24568988873
No 89
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.35 E-value=1.4e-11 Score=108.00 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=70.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
+|+++|.+|||||||+|++++... . . ...|.+.....+.+++..+++|||||... .......++... |
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~-~-~-~~~t~g~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~a-~ 68 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP-K-K-VAPTVGFTPTKLRLDKYEVCIFDLGGGAN--------FRGIWVNYYAEA-H 68 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC-c-c-ccCcccceEEEEEECCEEEEEEECCCcHH--------HHHHHHHHHcCC-C
Confidence 489999999999999999997622 1 1 12244444556667778999999999732 222344555555 9
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 320 AVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 320 ~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
+++||+|+++.. +......++..+.. ...++|+++|
T Consensus 69 ~ii~V~D~s~~~--s~~~~~~~l~~l~~~~~~~~~piliv 106 (167)
T cd04161 69 GLVFVVDSSDDD--RVQEVKEILRELLQHPRVSGKPILVL 106 (167)
T ss_pred EEEEEEECCchh--HHHHHHHHHHHHHcCccccCCcEEEE
Confidence 999999999854 33333445555543 2357898886
No 90
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.35 E-value=2e-11 Score=108.84 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=72.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC--CcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc--hHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD--VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE--DRNIIEMQAVT 312 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~--~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~--~~~~ie~~~~~ 312 (358)
..+.|+++|.+|||||||+|+|++.+ ..+++.+++|..+..... +..+.+|||||+...... ....+......
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 56789999999999999999999875 346677788877655332 368999999998654221 22233333333
Q ss_pred HHhhc--ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 313 ALAHL--RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 313 ~l~~~--~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
++... .+++++|+|++.+...... .+...+... ++|++++
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~---~i~~~l~~~--~~~~iiv 141 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDL---QMIEWLKEY--GIPVLIV 141 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHH---HHHHHHHHc--CCcEEEE
Confidence 44433 2678899998875433222 222333222 5776665
No 91
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.35 E-value=1.3e-11 Score=109.98 Aligned_cols=107 Identities=11% Similarity=0.138 Sum_probs=72.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
....|+++|.+|||||||+|++++..+.. + .+|.++....+.+++.++.+|||||... .......++..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 84 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ--H-QPTQHPTSEELAIGNIKFTTFDLGGHQQ--------ARRLWKDYFPE 84 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc--c-CCccccceEEEEECCEEEEEEECCCCHH--------HHHHHHHHhCC
Confidence 34789999999999999999999876531 1 2355556666777788999999999842 12223345555
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
. |+++||+|++++... ......+.++.. .+.++|+++|
T Consensus 85 a-d~ii~vvD~~~~~~~--~~~~~~l~~l~~~~~~~~~piliv 124 (184)
T smart00178 85 V-NGIVYLVDAYDKERF--AESKRELDALLSDEELATVPFLIL 124 (184)
T ss_pred C-CEEEEEEECCcHHHH--HHHHHHHHHHHcChhhcCCCEEEE
Confidence 5 999999999875322 222233443332 2357898886
No 92
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.34 E-value=1e-11 Score=107.02 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=69.4
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||++++.+..+. ..++.|+.+.....+..++. .+++|||||.... .......++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~ 72 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQF--------TAMRDLYIKN 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECCEEEEEEEEECCCcccc--------chHHHHHhhc
Confidence 47999999999999999999976643 33444444444444555554 5678999997432 1112234444
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
. |++++|+|++++.. .+....++..+... ..++|+++|
T Consensus 73 ~-~~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv 112 (163)
T cd04136 73 G-QGFVLVYSITSQSS--FNDLQDLREQILRVKDTENVPMVLV 112 (163)
T ss_pred C-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4 99999999988543 33344455555331 246898876
No 93
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.34 E-value=2e-11 Score=105.31 Aligned_cols=108 Identities=16% Similarity=0.185 Sum_probs=67.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||+|+|++.+......+..........+.+++ ..+.+|||||.. .........++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 73 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE--------RYRSLAPMYYRG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH--------HHHHHHHHHhcc
Confidence 4799999999999999999998875432223222222233333443 467899999962 122223334454
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
. |++++|+|++++.. ......++..+.... .+.|++++
T Consensus 74 ~-~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iivv 112 (163)
T cd01860 74 A-AAAIVVYDITSEES--FEKAKSWVKELQRNASPNIIIALV 112 (163)
T ss_pred C-CEEEEEEECcCHHH--HHHHHHHHHHHHHhCCCCCeEEEE
Confidence 4 99999999987443 333345555554433 45777765
No 94
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.34 E-value=2e-11 Score=106.19 Aligned_cols=107 Identities=21% Similarity=0.151 Sum_probs=68.5
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcce-eeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTT-KSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT-~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
.+|+++|.+|||||||++++++..... .++.|+ .+.....+..++. .+++|||||... ........++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~ 73 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER--------FRAVTRSYYR 73 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCcccceeEEEEEEEECCEEEEEEEEECCCcHH--------HHHHHHHHhc
Confidence 479999999999999999999876542 333332 2333333444443 678999999732 2223344555
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
.. |++++|+|++++.+ .+....++..+... -.+.|+++|
T Consensus 74 ~~-~~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iiiv 113 (166)
T cd04122 74 GA-AGALMVYDITRRST--YNHLSSWLTDARNLTNPNTVIFLI 113 (166)
T ss_pred CC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCeEEEE
Confidence 55 99999999998543 33334555555432 235788776
No 95
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.34 E-value=1.6e-11 Score=105.14 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=68.4
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||+|++++.++.. .+..|+.+.....+.+++. .+++|||||.... ......++..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~l~~~~~~~ 72 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--------SAMRDQYMRT 72 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC-CcCCcchheEEEEEEECCEEEEEEEEECCCCcch--------HHHHHHHHhc
Confidence 479999999999999999999876532 3334444444445555554 4678999997421 1222334444
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
. +++++|+|+++.. +.+....++..+... ..++|+++|
T Consensus 73 ~-~~~i~v~~~~~~~--s~~~~~~~~~~i~~~~~~~~~piivv 112 (162)
T cd04138 73 G-EGFLCVFAINSRK--SFEDIHTYREQIKRVKDSDDVPMVLV 112 (162)
T ss_pred C-CEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4 9999999998743 233333344444332 246888876
No 96
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.34 E-value=1.7e-11 Score=109.75 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=69.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCccee-eeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTK-SLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~-~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
+|+++|.+|||||||++++++.......++.|+. +.....+.+++ ..++||||||... +.......+..
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~ 73 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER--------FRSVTHAYYRD 73 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH--------HHHhhHHHccC
Confidence 6899999999999999999988765544443332 33333344544 3678999999621 22222334444
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
. |++++|+|+++.. +.+....++..+.... .+.|+++|
T Consensus 74 a-d~~i~v~D~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv 112 (191)
T cd04112 74 A-HALLLLYDITNKA--SFDNIRAWLTEIKEYAQEDVVIMLL 112 (191)
T ss_pred C-CEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 4 9999999998854 3333344555555433 26788876
No 97
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.33 E-value=1.5e-11 Score=109.86 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=70.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceee-eEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKS-LYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~-~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
+|+++|.+|||||||++++++.++..+++..|+.. .....+..++. .+.+|||||.... .......+..
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~~~~ 73 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY--------EAMSRIYYRG 73 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhh--------hhhhHhhcCC
Confidence 68999999999999999999887665455544433 22334556654 4569999997421 1112223334
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+|++++|+|+++... .+....++..+.....+.|+++|
T Consensus 74 -~d~iilv~d~~~~~s--~~~~~~~~~~i~~~~~~~piilv 111 (193)
T cd04118 74 -AKAAIVCYDLTDSSS--FERAKFWVKELQNLEEHCKIYLC 111 (193)
T ss_pred -CCEEEEEEECCCHHH--HHHHHHHHHHHHhcCCCCCEEEE
Confidence 499999999987532 33334566666554446898886
No 98
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.33 E-value=2.2e-11 Score=105.82 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=72.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||++++++..+.....++.+.+.....+.+.+. .+.+|||||... .......++.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 78 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER--------FRSITQSYYR 78 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH--------HHHHHHHHhc
Confidence 468999999999999999999977665445555555666666667664 578899999732 2222334455
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCC-CCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFN-NKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~-~kPvilv 357 (358)
.. |++++|+|+++... .+....++..+..... +.|++++
T Consensus 79 ~~-d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~~~i~v 118 (169)
T cd04114 79 SA-NALILTYDITCEES--FRCLPEWLREIEQYANNKVITILV 118 (169)
T ss_pred CC-CEEEEEEECcCHHH--HHHHHHHHHHHHHhCCCCCeEEEE
Confidence 54 99999999987432 3333344444433222 4676665
No 99
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.33 E-value=1.4e-11 Score=108.02 Aligned_cols=104 Identities=17% Similarity=0.244 Sum_probs=69.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
+|+++|.+|||||||+++|++.... . +.+|.+.....+.+.+..+++|||||.... ...+..++... |
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~--------~~~~~~~~~~a-d 68 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKL--------RPLWKHYYLNT-Q 68 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-C--cCCcCceeEEEEEECCEEEEEEECCCChhc--------chHHHHHhccC-C
Confidence 4789999999999999999987532 2 233555555566677789999999998432 11223344554 9
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 320 AVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 320 ~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
++++|+|++++.. ..+...++..+.. ...+.|++++
T Consensus 69 ~ii~V~D~s~~~s--~~~~~~~~~~~~~~~~~~~~piilv 106 (169)
T cd04158 69 AVVFVVDSSHRDR--VSEAHSELAKLLTEKELRDALLLIF 106 (169)
T ss_pred EEEEEEeCCcHHH--HHHHHHHHHHHhcChhhCCCCEEEE
Confidence 9999999988543 3333445555432 2345788876
No 100
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.33 E-value=2.5e-11 Score=106.21 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=70.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||++++++........++.+.+.....+.+++ ..+++|||||..... .......+.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 74 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR-------KSMVQHYYR 74 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH-------HhhHHHhhc
Confidence 35799999999999999999998765433334333444445555555 478899999973210 011222334
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
.. |++++|+|++++.. ......++..+... -.+.|+++|
T Consensus 75 ~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~iiv 115 (170)
T cd04115 75 NV-HAVVFVYDVTNMAS--FHSLPSWIEECEQHSLPNEVPRILV 115 (170)
T ss_pred CC-CEEEEEEECCCHHH--HHhHHHHHHHHHHhcCCCCCCEEEE
Confidence 44 99999999987443 33344455554432 146898886
No 101
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.33 E-value=1.5e-11 Score=107.58 Aligned_cols=104 Identities=10% Similarity=0.067 Sum_probs=68.6
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccE
Q psy15712 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAA 320 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~ 320 (358)
|+++|.+|||||||++++++..+.....| |.+.....+...+..+.+|||||.... ...+..+++.. |+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~p--t~g~~~~~i~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~a-d~ 70 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVP--TTGFNSVAIPTQDAIMELLEIGGSQNL--------RKYWKRYLSGS-QG 70 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccc--cCCcceEEEeeCCeEEEEEECCCCcch--------hHHHHHHHhhC-CE
Confidence 78999999999999999998764322222 222223345566778999999998432 12233455555 99
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 321 VLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 321 iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+++|+|+++... ......++..+.....++|+++|
T Consensus 71 ii~V~D~t~~~s--~~~~~~~l~~~~~~~~~~piilv 105 (164)
T cd04162 71 LIFVVDSADSER--LPLARQELHQLLQHPPDLPLVVL 105 (164)
T ss_pred EEEEEECCCHHH--HHHHHHHHHHHHhCCCCCcEEEE
Confidence 999999988542 23333445555433357899886
No 102
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.33 E-value=1.6e-11 Score=110.71 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=69.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec-C--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK-Y--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
+|+++|.+|||||||++++++..+.....|+.+.+.....+.++ + ..+++|||||... .......++..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~~~ 73 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER--------FGGMTRVYYRG 73 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh--------hhhhHHHHhCC
Confidence 68999999999999999999876544334444444444455555 3 3678999999832 12223345555
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-----CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-----FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-----f~~kPvilv 357 (358)
. +++++|+|++++..+ +....|+..+... -.+.|+++|
T Consensus 74 a-~~~ilv~D~t~~~s~--~~~~~~~~~i~~~~~~~~~~~~piilv 116 (201)
T cd04107 74 A-VGAIIVFDVTRPSTF--EAVLKWKADLDSKVTLPNGEPIPCLLL 116 (201)
T ss_pred C-CEEEEEEECCCHHHH--HHHHHHHHHHHHhhcccCCCCCcEEEE
Confidence 5 999999999885433 3333444444321 146798886
No 103
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.33 E-value=2.2e-11 Score=107.21 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=70.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec------------CceEEEEeCCCCCCCCcchHHH
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK------------YLRWQVIDTPGILDHSLEDRNI 305 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~------------~~~~~liDTPG~~~~~~~~~~~ 305 (358)
..+|+++|.+|||||||++++++........+..+.+.....+.+. ...+++|||||.. .
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~ 75 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE--------R 75 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH--------H
Confidence 3579999999999999999999877643333333333333333332 2468899999962 1
Q ss_pred HHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 306 IEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 306 ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
........+++. |++++|+|++++.. ......|+..+... ..+.|+++|
T Consensus 76 ~~~~~~~~~~~~-~~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piiiv 126 (180)
T cd04127 76 FRSLTTAFFRDA-MGFLLIFDLTNEQS--FLNVRNWMSQLQTHAYCENPDIVLC 126 (180)
T ss_pred HHHHHHHHhCCC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 222334455655 99999999987432 33334455555432 246788876
No 104
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.33 E-value=2.2e-11 Score=107.28 Aligned_cols=106 Identities=20% Similarity=0.201 Sum_probs=69.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
..+|+++|.+|||||||+++|++.... ... .|.+.....+.+.+..+.+|||||... .......++...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~~ 83 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV-HTS--PTIGSNVEEIVYKNIRFLMWDIGGQES--------LRSSWNTYYTNT 83 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-CcC--CccccceEEEEECCeEEEEEECCCCHH--------HHHHHHHHhhcC
Confidence 468999999999999999999876643 122 244444556667778999999999842 122233345554
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
|++++|+|+++... .....+.+.++.. ...++|++++
T Consensus 84 -d~vi~V~D~s~~~~--~~~~~~~l~~~~~~~~~~~~p~viv 122 (174)
T cd04153 84 -DAVILVIDSTDRER--LPLTKEELYKMLAHEDLRKAVLLVL 122 (174)
T ss_pred -CEEEEEEECCCHHH--HHHHHHHHHHHHhchhhcCCCEEEE
Confidence 99999999987532 2222233333321 2346888876
No 105
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.32 E-value=1.5e-11 Score=110.03 Aligned_cols=106 Identities=12% Similarity=0.100 Sum_probs=67.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||+++|++..+.. .++.|+.+.......+++. .+++|||||... .......++...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~~a 71 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE-TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE--------YTALRDQWIREG 71 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc-cCCCchHhhEEEEEEECCEEEEEEEEECCCchh--------hHHHHHHHHHhC
Confidence 38899999999999999999766532 3444443333334445554 478999999732 112233345555
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHccc----CCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPL----FNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~----f~~kPvilv 357 (358)
|++++|+|+++... .+....++..+... ..+.|+++|
T Consensus 72 -d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~piilv 112 (190)
T cd04144 72 -EGFILVYSITSRST--FERVERFREQIQRVKDESAADVPIMIV 112 (190)
T ss_pred -CEEEEEEECCCHHH--HHHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 99999999987443 33333444444321 246898876
No 106
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.32 E-value=2.4e-11 Score=106.62 Aligned_cols=107 Identities=17% Similarity=0.251 Sum_probs=70.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.+|||||||+|+|++..+. .+. .|.+.....+.+++..+++|||||... ....+..++..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~-~t~g~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~~~ 81 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID--TIS-PTLGFQIKTLEYEGYKLNIWDVGGQKT--------LRPYWRNYFES 81 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC--CcC-CccccceEEEEECCEEEEEEECCCCHH--------HHHHHHHHhCC
Confidence 4568999999999999999999987542 111 233344455566777899999999732 12223344555
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
. |++++|+|+++... ......++..+.. ...++|+++|
T Consensus 82 ~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~iiv 121 (173)
T cd04154 82 T-DALIWVVDSSDRLR--LDDCKRELKELLQEERLAGATLLIL 121 (173)
T ss_pred C-CEEEEEEECCCHHH--HHHHHHHHHHHHhChhhcCCCEEEE
Confidence 5 99999999988532 2333334444322 2347888886
No 107
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.32 E-value=2.3e-11 Score=104.82 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=67.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||+|+|++........|..+.+.....+.+++ ..+++|||||... ........++..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~ 73 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER--------FRTLTSSYYRGA 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchh--------hhhhhHHHhCCC
Confidence 689999999999999999998775433333333333333333443 4679999999632 122223344444
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
|++++|+|+++...+ +....++..+... -.+.|+++|
T Consensus 74 -d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~~iv 112 (161)
T cd01863 74 -QGVILVYDVTRRDTF--TNLETWLNELETYSTNNDIVKMLV 112 (161)
T ss_pred -CEEEEEEECCCHHHH--HhHHHHHHHHHHhCCCCCCcEEEE
Confidence 999999999875433 3334455555432 246777775
No 108
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.32 E-value=1.6e-11 Score=104.25 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=66.4
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccE
Q psy15712 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAA 320 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~ 320 (358)
|+++|.+|||||||+|+|++........|.. .........++..+.+|||||... .......++... |+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~-d~ 70 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTV--GFNMRKVTKGNVTLKVWDLGGQPR--------FRSMWERYCRGV-NA 70 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCC--CcceEEEEECCEEEEEEECCCCHh--------HHHHHHHHHhcC-CE
Confidence 7899999999999999999987654444433 333334556667899999999732 122223344444 99
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 321 VLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 321 iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
+++|+|++....+ .....++..+.. ...++|+++|
T Consensus 71 ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~iiv 107 (159)
T cd04159 71 IVYVVDAADRTAL--EAAKNELHDLLEKPSLEGIPLLVL 107 (159)
T ss_pred EEEEEECCCHHHH--HHHHHHHHHHHcChhhcCCCEEEE
Confidence 9999999874322 222223333322 2246888876
No 109
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.31 E-value=2.9e-11 Score=107.65 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=70.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||+|++++..+.....+..+.+.....+..++. .+++|||||... ........+...
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~--------~~~~~~~~~~~~ 73 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER--------FRSLNNSYYRGA 73 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH--------HHhhHHHHccCC
Confidence 6999999999999999999988765433344444444444555443 568999999632 222233444554
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
|++++|+|++++. +......|+.++.... .+.|++++
T Consensus 74 -d~iilv~d~~~~~--s~~~i~~~~~~i~~~~~~~~~~ivv 111 (188)
T cd04125 74 -HGYLLVYDVTDQE--SFENLKFWINEINRYARENVIKVIV 111 (188)
T ss_pred -CEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 9999999998854 3444445666655432 24677765
No 110
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.31 E-value=2.4e-11 Score=105.31 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=69.7
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||+++++.... +..++.|+.+.....+..++. .+++|||||.... .......++.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~ 72 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF--------TAMRDLYMKN 72 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEEEEEEEEECCCcccc--------hhHHHHHHhh
Confidence 4799999999999999999996554 334555555544445555554 4579999998431 1122334555
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
. |++++|+|+++...+ +....++..+.. ...+.|++++
T Consensus 73 ~-d~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv 112 (164)
T cd04175 73 G-QGFVLVYSITAQSTF--NDLQDLREQILRVKDTEDVPMILV 112 (164)
T ss_pred C-CEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEE
Confidence 5 999999999875433 233344444432 2357898886
No 111
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=99.31 E-value=3.4e-12 Score=91.48 Aligned_cols=54 Identities=61% Similarity=0.859 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 305 IIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 305 ~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
.+|++++.+++|++++|+|++|+|+.||++.++|+.+++++++.|+++|+++|+
T Consensus 1 ~IE~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~ 54 (58)
T PF06858_consen 1 EIEMQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVL 54 (58)
T ss_dssp HHHHHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE
T ss_pred ChhHHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 378999999999999999999999999999999999999999999999999874
No 112
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.31 E-value=2.1e-11 Score=104.21 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=70.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||+|++++.. ....+..++.+........++ ..+++|||||... ........+...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~ 71 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE--------FSAMRDLYIRQG 71 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH--------HHHHHHHHHhcC
Confidence 48999999999999999999876 344555566666666666654 4678999999743 122223344444
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
|++++|+|++++. +..+...++..+.... .++|++++
T Consensus 72 -~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv 110 (160)
T cd00876 72 -DGFILVYSITDRE--SFEEIKGYREQILRVKDDEDIPIVLV 110 (160)
T ss_pred -CEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 9999999998743 3333344444444333 36888876
No 113
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.31 E-value=3e-11 Score=101.73 Aligned_cols=109 Identities=27% Similarity=0.264 Sum_probs=75.4
Q ss_pred EecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEec-CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccE
Q psy15712 243 ICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYK-YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAA 320 (358)
Q Consensus 243 lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~ 320 (358)
++|.+|+|||||+|+|++.... ..+.+++|.........+. +..+.+|||||+.+........ ...+...+... |+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~-~~~~~~~~~~~-d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER-EELARRVLERA-DL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH-HHHHHHHHHhC-CE
Confidence 5899999999999999998765 7778888888877776665 6789999999998765433211 12233344444 99
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 321 VLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 321 iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
+++|+|++......... ++..... .++|+++|+
T Consensus 79 il~v~~~~~~~~~~~~~---~~~~~~~--~~~~~ivv~ 111 (163)
T cd00880 79 ILFVVDADLRADEEEEK---LLELLRE--RGKPVLLVL 111 (163)
T ss_pred EEEEEeCCCCCCHHHHH---HHHHHHh--cCCeEEEEE
Confidence 99999999865432222 2333222 267888764
No 114
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.31 E-value=3.4e-11 Score=107.14 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=73.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.+|||||||+|+|++..+. .. ..|..+..+.+.+++..+++|||||... ....+..++..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~--~~T~~~~~~~i~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~ 86 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QH--VPTLHPTSEELTIGNIKFKTFDLGGHEQ--------ARRLWKDYFPE 86 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-cc--CCccCcceEEEEECCEEEEEEECCCCHH--------HHHHHHHHhcc
Confidence 4578999999999999999999987653 11 2245556677778888999999999632 12223344555
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEeC
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLEY 358 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilvf 358 (358)
. |++++|+|+++.... .....++.++.. ...+.|++++.
T Consensus 87 a-d~iilV~D~~~~~s~--~~~~~~~~~i~~~~~~~~~pvivv~ 127 (190)
T cd00879 87 V-DGIVFLVDAADPERF--QESKEELDSLLSDEELANVPFLILG 127 (190)
T ss_pred C-CEEEEEEECCcHHHH--HHHHHHHHHHHcCccccCCCEEEEE
Confidence 5 999999999875332 223344444432 23568998863
No 115
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.30 E-value=2.4e-11 Score=104.87 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=66.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
+|+++|.+|||||||+++|+..... ...| |.+.....+.+.+..+++|||||... ....+..++... |
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~~-~ 68 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIP--TIGFNVETVTYKNLKFQVWDLGGQTS--------IRPYWRCYYSNT-D 68 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCC--ccCcCeEEEEECCEEEEEEECCCCHH--------HHHHHHHHhcCC-C
Confidence 4789999999999999999876542 2222 33344445566677899999999842 122233445554 9
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHH-Hcc-cCCCCeEEEe
Q psy15712 320 AVLYFIDISEQCGHSIQEQIGLFKS-IRP-LFNNKVGPLE 357 (358)
Q Consensus 320 ~iL~VvD~s~~~~~~~~~q~~ll~~-i~~-~f~~kPvilv 357 (358)
++++|+|+++.... ....+.+.. +.. ...++|+++|
T Consensus 69 ~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piiiv 106 (158)
T cd04151 69 AIIYVVDSTDRDRL--GTAKEELHAMLEEEELKGAVLLVF 106 (158)
T ss_pred EEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCcEEEE
Confidence 99999999875422 111222222 221 2347899887
No 116
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.30 E-value=1.7e-11 Score=127.92 Aligned_cols=104 Identities=25% Similarity=0.255 Sum_probs=77.0
Q ss_pred cCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh-hcccEEEE
Q psy15712 245 GFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA-HLRAAVLY 323 (358)
Q Consensus 245 G~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~-~~~d~iL~ 323 (358)
|.||||||||+|+|++.+..++++|++|.+...+.+.+++..+++|||||..+......+ |.....++. +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE--EEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH--HHHHHHHHhhcCCCEEEE
Confidence 899999999999999998889999999999999999888889999999999764322111 112222222 34599999
Q ss_pred EEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 324 FIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 324 VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
|+|+++. ++.+.+..++.+. ++|++++
T Consensus 79 VvDat~l-----er~l~l~~ql~~~--~~PiIIV 105 (591)
T TIGR00437 79 VVDASNL-----ERNLYLTLQLLEL--GIPMILA 105 (591)
T ss_pred EecCCcc-----hhhHHHHHHHHhc--CCCEEEE
Confidence 9999862 2334444555443 7898876
No 117
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.30 E-value=4.1e-11 Score=105.45 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=69.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||++++.+..+.....|....+.....+..++ ..+++|||||... ........++..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~~a 73 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQER--------FKCIASTYYRGA 73 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH--------HHhhHHHHhcCC
Confidence 589999999999999999998876433334444454445555554 3689999999832 222233445555
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcc-cCC-CCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRP-LFN-NKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~-~f~-~kPvilv 357 (358)
|++++|+|+++.. +......|+..+.. ... +.|+++|
T Consensus 74 -d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iilV 112 (170)
T cd04108 74 -QAIIIVFDLTDVA--SLEHTRQWLEDALKENDPSSVLLFLV 112 (170)
T ss_pred -CEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 9999999998743 33334456665532 222 3566665
No 118
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.30 E-value=2.9e-11 Score=103.99 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=69.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
+|+++|.+|||||||+|++++.... . ...|.......+.+.+..+.+|||||.... .......+... |
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~~-~ 68 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--T-TIPTIGFNVETVEYKNVSFTVWDVGGQDKI--------RPLWKHYYENT-N 68 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--C-CCCCcCcceEEEEECCEEEEEEECCCChhh--------HHHHHHHhccC-C
Confidence 4899999999999999999988732 1 123444555556677789999999998532 11233344454 9
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEeC
Q psy15712 320 AVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLEY 358 (358)
Q Consensus 320 ~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilvf 358 (358)
++++|+|++.+.. ......++..+... ..+.|++++.
T Consensus 69 ~~i~v~D~~~~~~--~~~~~~~~~~~~~~~~~~~~piiiv~ 107 (158)
T cd00878 69 GIIFVVDSSDRER--IEEAKEELHKLLNEEELKGVPLLIFA 107 (158)
T ss_pred EEEEEEECCCHHH--HHHHHHHHHHHHhCcccCCCcEEEEe
Confidence 9999999998542 22333344443221 2478988863
No 119
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.30 E-value=2.5e-11 Score=105.00 Aligned_cols=107 Identities=14% Similarity=0.151 Sum_probs=68.8
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||++++........ +..|+.+.....+..++. .+++|||||..... .....++.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ 72 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA--------SMRDLYIKN 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCchhheEEEEEEECCEEEEEEEEECCCccccc--------chHHHHHhh
Confidence 4799999999999999999998765432 333333344444555554 46789999974321 112234455
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
. |++++|+|+++... ..+...++..+... ..++|+++|
T Consensus 73 a-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piviv 112 (163)
T cd04176 73 G-QGFIVVYSLVNQQT--FQDIKPMRDQIVRVKGYEKVPIILV 112 (163)
T ss_pred C-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4 99999999988543 33444455554432 247898886
No 120
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.30 E-value=1.1e-10 Score=120.60 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=74.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC-cccCC-CcceeeeEEEEEEecCceEEEEeCCCCCCCCcchH--HHHHHHHHHH
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV-DVQPY-AFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDR--NIIEMQAVTA 313 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~-~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~--~~ie~~~~~~ 313 (358)
..+|+++|.|||||||++|+|+|... .++.. +.||. .......+.+..+.||||||+.+...+.. ..+......+
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 45899999999999999999999874 45554 45554 44444456788999999999998743321 1222222234
Q ss_pred Hhh-cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCC---CCeEEEeC
Q psy15712 314 LAH-LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFN---NKVGPLEY 358 (358)
Q Consensus 314 l~~-~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~---~kPvilvf 358 (358)
+.. .+|+||||..++..... . +...+++.+...|. -+-+||||
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D-~-eD~~aLr~Iq~lFG~~Iwk~tIVVF 243 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRD-S-NDLPLLRTITDVLGPSIWFNAIVTL 243 (763)
T ss_pred HhcCCCCEEEEEEeCCCcccc-H-HHHHHHHHHHHHhCHHhHcCEEEEE
Confidence 442 35899999877542221 1 22344444443332 35666665
No 121
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.30 E-value=4.7e-11 Score=103.79 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=71.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||++++++..+.....|+.+.+.....+..++. .+++|||||.... ......++.+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~~~~~~~~~~~ 73 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY--------QTITKQYYRRA 73 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhH--------HhhHHHHhcCC
Confidence 6899999999999999999987765444444444444445555553 5789999997321 11223344444
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
|++++|+|+++... .+....++..+.... .+.|+++|
T Consensus 74 -~~~i~v~d~~~~~s--f~~~~~~~~~~~~~~~~~~~iilv 111 (161)
T cd04117 74 -QGIFLVYDISSERS--YQHIMKWVSDVDEYAPEGVQKILI 111 (161)
T ss_pred -cEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCeEEEE
Confidence 99999999998543 344445666654432 25788776
No 122
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.30 E-value=2.4e-11 Score=108.86 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=58.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC-------CCcccCCCcceeeeEEEEEEec--------------CceEEEEeCCCCCCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA-------DVDVQPYAFTTKSLYVGHTDYK--------------YLRWQVIDTPGILDH 298 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~-------~~~v~~~~~tT~~~~~~~~~~~--------------~~~~~liDTPG~~~~ 298 (358)
+|+++|.+|+|||||+++|++. ....+..+++|.+.....+.+. +..+.+|||||..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 6899999999999999999973 1123345567877776666554 5689999999983
Q ss_pred CcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC
Q psy15712 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 299 ~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~ 331 (358)
.+......+... .|++++|+|++...
T Consensus 80 ------~~~~~~~~~~~~-~d~vi~VvD~~~~~ 105 (192)
T cd01889 80 ------SLIRTIIGGAQI-IDLMLLVVDATKGI 105 (192)
T ss_pred ------HHHHHHHHHHhh-CCEEEEEEECCCCc
Confidence 111222233333 49999999998743
No 123
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.30 E-value=1.8e-11 Score=106.30 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=68.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||++++++... ...++.++.........+++. .+++|||||........ ....+...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~~~~~~~ 72 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQ-------LERSIRWA 72 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccch-------HHHHHHhC
Confidence 389999999999999999987554 344555554444444555554 57899999986421110 12234444
Q ss_pred ccEEEEEEeCCCCCCCC-HHHHHHHHHHHcccCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHS-IQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~-~~~q~~ll~~i~~~f~~kPvilv 357 (358)
|++++|+|+++..++. ......++........+.|+++|
T Consensus 73 -d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv 112 (165)
T cd04146 73 -DGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILV 112 (165)
T ss_pred -CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 9999999999865432 12223334443321346888876
No 124
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.30 E-value=4.5e-11 Score=104.21 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=69.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||++++.+........+..+.+.....+.+++. .+++|||||... .......++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~ 75 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER--------FRSLRTPFY 75 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH--------HHHhHHHHh
Confidence 3568999999999999999999987765444444344443444455554 568999999632 222233445
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcc---c--CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRP---L--FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~---~--f~~kPvilv 357 (358)
+.. |++++|+|+++...+ +....+...+.. . -.+.|+++|
T Consensus 76 ~~~-d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~piilv 120 (170)
T cd04116 76 RGS-DCCLLTFAVDDSQSF--QNLSNWKKEFIYYADVKEPESFPFVVL 120 (170)
T ss_pred cCC-CEEEEEEECCCHHHH--HhHHHHHHHHHHhcccccCCCCcEEEE
Confidence 554 999999999875432 222233333322 1 135788876
No 125
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.30 E-value=4.1e-11 Score=100.88 Aligned_cols=83 Identities=25% Similarity=0.275 Sum_probs=61.4
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|+|||||+|+|++.....+..+++|.+.....+.+++ ..+.+|||||..+.. .. .......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----~~---~~~~~~~ 73 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYR-----AI---RRLYYRA 73 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccch-----HH---HHHHHhh
Confidence 5799999999999999999999886667778889888887777777 678899999954321 11 1122333
Q ss_pred cccEEEEEEeCCCC
Q psy15712 317 LRAAVLYFIDISEQ 330 (358)
Q Consensus 317 ~~d~iL~VvD~s~~ 330 (358)
. +.++.++|.+..
T Consensus 74 ~-~~~i~~~d~~~~ 86 (161)
T TIGR00231 74 V-ESSLRVFDIVIL 86 (161)
T ss_pred h-hEEEEEEEEeee
Confidence 3 667777776654
No 126
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.29 E-value=1.1e-11 Score=115.55 Aligned_cols=117 Identities=20% Similarity=0.195 Sum_probs=77.6
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
..+..|+++|.||+|||||+|+|++.... ++..+-+|.....-...+++..+.+|||||+.+....+.. .....+..+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~-~r~~~~d~l 115 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAE-HRQLYRDYL 115 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHH-HHHHHHHHh
Confidence 34567889999999999999999976654 4444545554444445667788999999999987554432 233345566
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
... |++|+++|+.++.-...+ .++..+.-...++|++++
T Consensus 116 ~~~-DLvL~l~~~~draL~~d~---~f~~dVi~~~~~~~~i~~ 154 (296)
T COG3596 116 PKL-DLVLWLIKADDRALGTDE---DFLRDVIILGLDKRVLFV 154 (296)
T ss_pred hhc-cEEEEeccCCCccccCCH---HHHHHHHHhccCceeEEE
Confidence 666 999999999886533222 334433322223666654
No 127
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.29 E-value=3.7e-11 Score=104.42 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=67.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
+|+++|.+|||||||++++...... ...| |.+.....+......+++|||||... .......+++.. |
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~p--t~g~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~a-d 69 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT-Q 69 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCC--CCCcceEEEEECCEEEEEEECCCCHh--------HHHHHHHHhcCC-C
Confidence 6899999999999999999765543 2233 23333334555667899999999832 222234455665 9
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 320 AVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 320 ~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
+++||+|+++..+ ..+..+++.++.. .+.++|++|+
T Consensus 70 ~~i~v~D~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv 107 (159)
T cd04150 70 GLIFVVDSNDRER--IGEAREELQRMLNEDELRDAVLLVF 107 (159)
T ss_pred EEEEEEeCCCHHH--HHHHHHHHHHHHhcHHhcCCCEEEE
Confidence 9999999988543 3333344444422 2346888876
No 128
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.29 E-value=3.6e-11 Score=107.00 Aligned_cols=109 Identities=10% Similarity=0.080 Sum_probs=66.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe---cCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY---KYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~---~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
..+|+++|.+|||||||++++++.... ...|+.+.+.....+.. .+..+.+|||||... ....+...+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~ 73 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK--------LRPLWKSYT 73 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCcHh--------HHHHHHHHh
Confidence 457999999999999999999876643 23443332332222322 345789999999731 122223334
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEeC
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLEY 358 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilvf 358 (358)
+.. |++++|+|+++... ......++.++... ..++|+++|+
T Consensus 74 ~~~-d~ii~v~D~~~~~~--~~~~~~~~~~i~~~~~~~~~p~iiv~ 116 (183)
T cd04152 74 RCT-DGIVFVVDSVDVER--MEEAKTELHKITRFSENQGVPVLVLA 116 (183)
T ss_pred ccC-CEEEEEEECCCHHH--HHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 444 99999999988532 22223344433321 2368998873
No 129
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.29 E-value=5.8e-11 Score=106.78 Aligned_cols=109 Identities=13% Similarity=0.038 Sum_probs=73.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|..|||||||++++.+........+..+.+.....+..++ ..+++|||||... .......+++
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~--------~~~l~~~~~~ 77 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR--------FCTIFRSYSR 77 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHH--------HHHHHHHHhc
Confidence 46899999999999999999998665322223334444444455555 4678999999832 2222333444
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.. |++|+|+|++++..+ +....|+.++.....+.|+|||
T Consensus 78 ~a-d~illVfD~t~~~Sf--~~~~~w~~~i~~~~~~~piilV 116 (189)
T cd04121 78 GA-QGIILVYDITNRWSF--DGIDRWIKEIDEHAPGVPKILV 116 (189)
T ss_pred CC-CEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEE
Confidence 44 999999999985543 4444577777655567888886
No 130
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.29 E-value=3.8e-11 Score=107.73 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=68.2
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC--CCccc--------------CCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcch
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA--DVDVQ--------------PYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLED 302 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~--~~~v~--------------~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~ 302 (358)
.+|+++|.+|||||||+|+|++. .+... ...++|.......+.+.+..+++|||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~----- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD----- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-----
Confidence 48999999999999999999863 21110 1134455555566677788999999999843
Q ss_pred HHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 303 RNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 303 ~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+......+++.. |++++|+|+++.... ....++..+... ++|++++
T Consensus 78 ---~~~~~~~~~~~~-d~~ilV~d~~~~~~~---~~~~~~~~~~~~--~~p~iiv 123 (194)
T cd01891 78 ---FGGEVERVLSMV-DGVLLLVDASEGPMP---QTRFVLKKALEL--GLKPIVV 123 (194)
T ss_pred ---HHHHHHHHHHhc-CEEEEEEECCCCccH---HHHHHHHHHHHc--CCCEEEE
Confidence 222334455555 999999999874321 112233333322 6787776
No 131
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.29 E-value=3.1e-12 Score=124.24 Aligned_cols=127 Identities=22% Similarity=0.302 Sum_probs=81.6
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhccCChH--HHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEE
Q psy15712 166 LGQLNQARHLIDNVAKDYLRLMKYADSLY--RCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIII 243 (358)
Q Consensus 166 l~~v~~a~~~~~~l~~~~~~~~k~~~~~~--~~~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~l 243 (358)
+..+|++++......+.|...+....... ......+.....+....... .++..+++.. ........++++
T Consensus 65 i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~------~~~~i~~~~~-~~~~~~~~~v~v 137 (322)
T COG1161 65 LLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKL------SEEKIKRLKK-KGLLKRKIRVGV 137 (322)
T ss_pred EEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCccchHHHHHHH------HHHHHHHHhh-cCCCccceEEEE
Confidence 77799999999999999999887653110 00000011111111111110 0011111211 111234567999
Q ss_pred ecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcch
Q psy15712 244 CGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLED 302 (358)
Q Consensus 244 vG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~ 302 (358)
||+||||||||||+|.+.+. .+++.|++|++.+.-.+. ..+.|+||||++.+...+
T Consensus 138 vG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 138 VGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred EcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeEEecCCCcCCCCccc
Confidence 99999999999999999885 799999999999876654 458999999999776544
No 132
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.28 E-value=4.8e-11 Score=108.43 Aligned_cols=107 Identities=17% Similarity=0.168 Sum_probs=72.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
.|+++|.+|||||||++++....+.....++.+.+.....+.+++ ..+++|||+|... ....+..+++..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~--------~~~l~~~y~~~a 73 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQER--------FNSITSAYYRSA 73 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchh--------hHHHHHHHhcCC
Confidence 489999999999999999998776433334445566556667766 4678999999832 222334455655
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
|++++|+|+++..++ +....|+..+... ..+.|+++|
T Consensus 74 -d~iIlVfDvtd~~Sf--~~l~~w~~~i~~~~~~~~piilV 111 (202)
T cd04120 74 -KGIILVYDITKKETF--DDLPKWMKMIDKYASEDAELLLV 111 (202)
T ss_pred -CEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCcEEEE
Confidence 999999999986544 3333455544432 236788776
No 133
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.28 E-value=6.5e-11 Score=102.34 Aligned_cols=107 Identities=17% Similarity=0.228 Sum_probs=67.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC-CcccCCCcce-eeeEEEEEEec---CceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 240 TIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTT-KSLYVGHTDYK---YLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~tT-~~~~~~~~~~~---~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
+|+++|.+|||||||+++|.+.. .....+..|+ .+.....+... ...+++|||||.. .........+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--------~~~~~~~~~~ 73 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE--------LYSDMVSNYW 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH--------HHHHHHHHHh
Confidence 68999999999999999998642 2333444433 23333333332 2478999999962 1222233445
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|+++... ......++..+.....+.|+++|
T Consensus 74 ~~~-d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~p~ilv 113 (164)
T cd04101 74 ESP-SVFILVYDVSNKAS--FENCSRWVNKVRTASKHMPGVLV 113 (164)
T ss_pred CCC-CEEEEEEECcCHHH--HHHHHHHHHHHHHhCCCCCEEEE
Confidence 544 99999999987543 23334566665543346788876
No 134
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.28 E-value=2.5e-11 Score=106.09 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=68.7
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcc
Q psy15712 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLR 318 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~ 318 (358)
|+++|.+|||||||++++.+..+.....+ ++.......+..++. .+++|||||..... ......+...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~~~- 70 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVP-TVFENYSADVEVDGKPVELGLWDTAGQEDYD--------RLRPLSYPDT- 70 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCC-cEEeeeeEEEEECCEEEEEEEEECCCCcccc--------hhchhhcCCC-
Confidence 58999999999999999998775433223 333333334445554 57899999974321 1112233444
Q ss_pred cEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 319 AAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 319 d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
|++++|+|+++... .+... .|+..+.....++|+++|
T Consensus 71 d~~ilv~d~~~~~s--~~~~~~~~~~~i~~~~~~~piilv 108 (174)
T smart00174 71 DVFLICFSVDSPAS--FENVKEKWYPEVKHFCPNTPIILV 108 (174)
T ss_pred CEEEEEEECCCHHH--HHHHHHHHHHHHHhhCCCCCEEEE
Confidence 99999999987543 33332 366777665668999986
No 135
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.28 E-value=4e-11 Score=103.65 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=66.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||+|++++..... .+..|+.+........++ ..+++|||||..+.. ......+...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~--------~~~~~~~~~~ 72 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS--------AMRDQYMRTG 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECCEEEEEEEEECCCcccch--------HHHHHHHhhC
Confidence 68999999999999999999876532 233344444444444444 367899999975321 1122334444
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
|++++|+|+++... .+....+...+.. ...++|+++|
T Consensus 73 -~~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~pii~v 111 (164)
T smart00173 73 -EGFLLVYSITDRQS--FEEIKKFREQILRVKDRDDVPIVLV 111 (164)
T ss_pred -CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 99999999987433 2232333333322 1236898876
No 136
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.28 E-value=4.3e-11 Score=104.15 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=65.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe--cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY--KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||+|++++..+.....| |+.......+.. ....+++|||||....+ .....++..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ 72 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-TIEDTYRQVISCSKNICTLQITDTTGSHQFP--------AMQRLSISK 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCC-cchheEEEEEEECCEEEEEEEEECCCCCcch--------HHHHHHhhc
Confidence 4799999999999999999998775432222 222222222222 23467899999985422 112234444
Q ss_pred cccEEEEEEeCCCCCCCC-HHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHS-IQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~-~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
. +++++|+|+++...+. ....+..+.++... ..+.|+++|
T Consensus 73 ~-~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 114 (165)
T cd04140 73 G-HAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLV 114 (165)
T ss_pred C-CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 4 9999999998855332 12223334443321 246898887
No 137
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.28 E-value=4.8e-11 Score=109.61 Aligned_cols=111 Identities=12% Similarity=0.052 Sum_probs=72.1
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec--CceEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK--YLRWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
....+|+++|.+|||||||+++++.........|+...+.....+..+ ...+.+|||||.... ......+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~ 82 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGY 82 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhh--------hhhhHHH
Confidence 456799999999999999999998766543222322222232233333 347899999998432 1112233
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+... +++|+|+|+++..+ ......|+..+.....+.|+++|
T Consensus 83 ~~~~-~~~ilvfD~~~~~s--~~~i~~w~~~i~~~~~~~piilv 123 (219)
T PLN03071 83 YIHG-QCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLC 123 (219)
T ss_pred cccc-cEEEEEEeCCCHHH--HHHHHHHHHHHHHhCCCCcEEEE
Confidence 4444 99999999998543 34444577776655567899887
No 138
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.28 E-value=9.5e-12 Score=110.32 Aligned_cols=56 Identities=38% Similarity=0.555 Sum_probs=48.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~ 295 (358)
...+++++|+||||||||+|+|++.+. .+++.|++|++.+.... +..++++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 457899999999999999999999875 69999999998776554 247899999996
No 139
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.28 E-value=2.3e-11 Score=110.75 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=61.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCccc-------------------------------CCCcceeeeEEEEEEecCceEE
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQ-------------------------------PYAFTTKSLYVGHTDYKYLRWQ 288 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~-------------------------------~~~~tT~~~~~~~~~~~~~~~~ 288 (358)
+|+++|.+|+|||||+|+|+.....+. ...++|.+.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999975331111 1257888888888889999999
Q ss_pred EEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC
Q psy15712 289 VIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 289 liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~ 331 (358)
+|||||+.+ +......++... |++++|+|++...
T Consensus 81 liDTpG~~~--------~~~~~~~~~~~a-d~~llVvD~~~~~ 114 (208)
T cd04166 81 IADTPGHEQ--------YTRNMVTGASTA-DLAILLVDARKGV 114 (208)
T ss_pred EEECCcHHH--------HHHHHHHhhhhC-CEEEEEEECCCCc
Confidence 999999732 112233445554 9999999998754
No 140
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.27 E-value=4.1e-11 Score=104.88 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=65.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEE--EEec--CceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGH--TDYK--YLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~--~~~~--~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
+|+++|.+|||||||+++++.........+ |.+..... +..+ ...+.+|||||...... .....+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~ 71 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVA--TLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG--------LRDGYYI 71 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEECCCChhhcc--------ccHHHhc
Confidence 689999999999999999986554322222 33222222 2222 34678999999853221 1111233
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
. +|++++|+|++++. +......++..+.....+.|+++|
T Consensus 72 ~-~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~piiiv 110 (166)
T cd00877 72 G-GQCAIIMFDVTSRV--TYKNVPNWHRDLVRVCGNIPIVLC 110 (166)
T ss_pred C-CCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCcEEEE
Confidence 3 49999999998743 333344566666554447899886
No 141
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.27 E-value=6.6e-11 Score=104.50 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=69.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
..+|+++|.+|||||||++++...... ...| |.........+....+++|||||... .......+++..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~~~a 81 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIP--TIGFNVETVTYKNISFTVWDVGGQDK--------IRPLWRHYYTNT 81 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCC--ccccceEEEEECCEEEEEEECCCChh--------hHHHHHHHhCCC
Confidence 468999999999999999999754432 2223 33333334456677899999999842 122233445555
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
|++++|+|++++.+ .++..+++..+.. ...+.|++||
T Consensus 82 -d~ii~v~D~t~~~s--~~~~~~~l~~~~~~~~~~~~piilv 120 (175)
T smart00177 82 -QGLIFVVDSNDRDR--IDEAREELHRMLNEDELRDAVILVF 120 (175)
T ss_pred -CEEEEEEECCCHHH--HHHHHHHHHHHhhCHhhcCCcEEEE
Confidence 99999999998543 3333445554422 2346788876
No 142
>PTZ00369 Ras-like protein; Provisional
Probab=99.27 E-value=5.3e-11 Score=106.36 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=68.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||++++.+..+.. .+..|+.......+.+++. .+++|||||..+.. .....++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~l~~~~~ 74 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFID-EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS--------AMRDQYM 74 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCc-CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccch--------hhHHHHh
Confidence 45789999999999999999999876532 2323332333334444444 56789999985321 1122344
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
... |++++|+|++++.+ .+....++..+... ..+.|+++|
T Consensus 75 ~~~-d~iilv~D~s~~~s--~~~~~~~~~~i~~~~~~~~~piiiv 116 (189)
T PTZ00369 75 RTG-QGFLCVYSITSRSS--FEEIASFREQILRVKDKDRVPMILV 116 (189)
T ss_pred hcC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 444 99999999998543 23333444444322 236788775
No 143
>PLN03110 Rab GTPase; Provisional
Probab=99.27 E-value=8.7e-11 Score=107.57 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=74.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+++|++........++.+.+.....+.+++. .+++|||||... +......+++
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~~ 83 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER--------YRAITSAYYR 83 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH--------HHHHHHHHhC
Confidence 468999999999999999999988765545555555555566666553 778999999732 2222334455
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
.. +++++|+|+++...+ +....|+..+.... .+.|+++|
T Consensus 84 ~~-~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~piiiv 123 (216)
T PLN03110 84 GA-VGALLVYDITKRQTF--DNVQRWLRELRDHADSNIVIMMA 123 (216)
T ss_pred CC-CEEEEEEECCChHHH--HHHHHHHHHHHHhCCCCCeEEEE
Confidence 44 999999999885543 33334555554432 36888886
No 144
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.27 E-value=7.8e-11 Score=104.89 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=70.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.+|||||||+++++..... ...| |.+.....+.+.+..+++|||||.. .....+..+++.
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~p--t~g~~~~~~~~~~~~~~i~D~~Gq~--------~~~~~~~~~~~~ 84 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQN 84 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccC--CcceeEEEEEECCEEEEEEECCCCH--------HHHHHHHHHhcc
Confidence 3468999999999999999999865542 2223 3334344456677889999999972 122234445566
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
. |+++||+|+++... ..+....+..+.. .+.+.|++|+
T Consensus 85 a-~~iI~V~D~s~~~s--~~~~~~~l~~~l~~~~~~~~piilv 124 (181)
T PLN00223 85 T-QGLIFVVDSNDRDR--VVEARDELHRMLNEDELRDAVLLVF 124 (181)
T ss_pred C-CEEEEEEeCCcHHH--HHHHHHHHHHHhcCHhhCCCCEEEE
Confidence 5 99999999998543 2332334444322 2357888886
No 145
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.27 E-value=5.1e-11 Score=105.37 Aligned_cols=107 Identities=15% Similarity=0.076 Sum_probs=70.1
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||++++....+. ..+..|+.......+.+++ ..+++|||||.... ......++++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~ 72 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY--------DRLRPLSYPQ 72 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEECCCccch--------hhhhhhhccc
Confidence 47999999999999999999987653 3343344333333445555 36789999999432 1112234555
Q ss_pred cccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
. |++++|+|++++..+ +... .|+..+.....+.|+++|
T Consensus 73 a-~~~ilv~d~~~~~s~--~~~~~~w~~~i~~~~~~~piilv 111 (175)
T cd01874 73 T-DVFLVCFSVVSPSSF--ENVKEKWVPEITHHCPKTPFLLV 111 (175)
T ss_pred C-CEEEEEEECCCHHHH--HHHHHHHHHHHHHhCCCCCEEEE
Confidence 5 999999999885533 2222 356666544457898886
No 146
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.27 E-value=9.8e-12 Score=102.09 Aligned_cols=109 Identities=20% Similarity=0.152 Sum_probs=67.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCc----ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVD----VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~----v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
+|+++|.+|||||||+++|++.... ..+....+..............+.+||++|........ ...+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~~ 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH--------QFFLK 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS--------HHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc--------cchhh
Confidence 5899999999999999999987654 12222333333333333333458899999994322211 11244
Q ss_pred hcccEEEEEEeCCCCCCCCH-HHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSI-QEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~-~~q~~ll~~i~~~f~~kPvilv 357 (358)
.. |++++|+|++++..... .+.+.++..+...-.+.|+++|
T Consensus 73 ~~-d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv 114 (119)
T PF08477_consen 73 KA-DAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILV 114 (119)
T ss_dssp HS-CEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred cC-cEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEE
Confidence 44 99999999998543322 2234456666554457898886
No 147
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.26 E-value=6.1e-11 Score=104.11 Aligned_cols=104 Identities=19% Similarity=0.165 Sum_probs=61.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcc------c---------CCCcceeeeEEEEEEe-----cCceEEEEeCCCCCCCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDV------Q---------PYAFTTKSLYVGHTDY-----KYLRWQVIDTPGILDHS 299 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v------~---------~~~~tT~~~~~~~~~~-----~~~~~~liDTPG~~~~~ 299 (358)
+|+++|.+|||||||+++|++....+ . ...++|.........+ .+..+++|||||+.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 69999999999999999998643111 0 1112343333222323 2346789999999532
Q ss_pred cchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 300 ~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
......++... |++++|+|+++....... ..+..+.. .++|+++|
T Consensus 81 -------~~~~~~~~~~a-d~~i~v~D~~~~~~~~~~---~~~~~~~~--~~~~iiiv 125 (179)
T cd01890 81 -------SYEVSRSLAAC-EGALLLVDATQGVEAQTL---ANFYLALE--NNLEIIPV 125 (179)
T ss_pred -------HHHHHHHHHhc-CeEEEEEECCCCccHhhH---HHHHHHHH--cCCCEEEE
Confidence 12233455555 999999999875432222 22222222 26787776
No 148
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.26 E-value=7.7e-11 Score=104.53 Aligned_cols=106 Identities=13% Similarity=0.126 Sum_probs=66.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec-C--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK-Y--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
+|+++|.+|||||||++++.+........| |+.......+... + ..+++|||||... ........+..
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~-t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~~ 72 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVP-TVFENYVTNIQGPNGKIIELALWDTAGQEE--------YDRLRPLSYPD 72 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCC-eeeeeeEEEEEecCCcEEEEEEEECCCchh--------HHHHHHHhCCC
Confidence 689999999999999999998776433223 3222222333333 3 3678999999632 11122223444
Q ss_pred cccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
. |++++|+|+++...+ +... .|+..+.....+.|+++|
T Consensus 73 a-d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv 111 (187)
T cd04132 73 V-DVLLICYAVDNPTSL--DNVEDKWFPEVNHFCPGTPIMLV 111 (187)
T ss_pred C-CEEEEEEECCCHHHH--HHHHHHHHHHHHHhCCCCCEEEE
Confidence 4 999999999875433 3222 355555433347898886
No 149
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.25 E-value=7.8e-11 Score=104.93 Aligned_cols=106 Identities=16% Similarity=0.237 Sum_probs=69.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
..+|+++|.+|||||||++++...... ...| |.......+...+..+++|||||... ...++..+++..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~~~~--T~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~a 85 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV-TTIP--TIGFNVETVEYKNLKFTMWDVGGQDK--------LRPLWRHYYQNT 85 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--ccccceEEEEECCEEEEEEECCCCHh--------HHHHHHHHhcCC
Confidence 468999999999999999999755432 2223 33344445566677899999999832 222334455555
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHc-c-cCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIR-P-LFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~-~-~f~~kPvilv 357 (358)
|+++||+|+++..+ ..+....+.++. . ...++|++||
T Consensus 86 -d~iI~v~D~t~~~s--~~~~~~~l~~~~~~~~~~~~piilv 124 (182)
T PTZ00133 86 -NGLIFVVDSNDRER--IGDAREELERMLSEDELRDAVLLVF 124 (182)
T ss_pred -CEEEEEEeCCCHHH--HHHHHHHHHHHHhCHhhcCCCEEEE
Confidence 99999999987433 333333444432 2 2346888887
No 150
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.25 E-value=7.9e-11 Score=101.24 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=68.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||++++++.... ..+.+++.+........++ ..+++|||||.... ......++++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~~~ 72 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY--------AAIRDNYHRSG 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECCEEEEEEEEECCChhhh--------hHHHHHHhhcC
Confidence 6899999999999999999976643 3444455444444444443 46899999997432 22233455565
Q ss_pred ccEEEEEEeCCCCCCC-CHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 318 RAAVLYFIDISEQCGH-SIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~-~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
+++++|+|++++..+ ........+..+.. ..++|+++|+
T Consensus 73 -~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~ 112 (164)
T cd04139 73 -EGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVG 112 (164)
T ss_pred -CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEE
Confidence 999999999875422 12233333333322 2468988873
No 151
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.24 E-value=8.5e-11 Score=107.29 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=70.6
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec-C--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK-Y--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
.+|+++|.+|||||||+|++++.+......|+.+.+.....+.+. + ..+++|||||... .......++.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~ 74 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER--------FRSITRSYYR 74 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchh--------HHHHHHHHhc
Confidence 579999999999999999999877644344444445555555443 3 3678999999732 2223334555
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
.. |++++|+|++++.. ......++..+.... ...|+++|
T Consensus 75 ~~-d~iilv~D~~~~~S--f~~l~~~~~~i~~~~~~~~~~iilv 115 (211)
T cd04111 75 NS-VGVLLVFDITNRES--FEHVHDWLEEARSHIQPHRPVFILV 115 (211)
T ss_pred CC-cEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 55 99999999988543 334445666554322 24566654
No 152
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.24 E-value=6.6e-11 Score=106.58 Aligned_cols=106 Identities=13% Similarity=0.155 Sum_probs=69.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||++++++.... ..+..|+.+.....+.+++ ..+++|||||..... .....++...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------~~~~~~~~~a 71 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP--------AMRKLSIQNS 71 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh--------HHHHHHhhcC
Confidence 4799999999999999999987654 2344455455555566666 467899999975321 1122344444
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
|++++|+|++++..+ +....++..+.... .++|+++|
T Consensus 72 -d~vilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv 110 (198)
T cd04147 72 -DAFALVYAVDDPESF--EEVERLREEILEVKEDKFVPIVVV 110 (198)
T ss_pred -CEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEE
Confidence 999999999875433 33333444443321 36899887
No 153
>KOG1491|consensus
Probab=99.24 E-value=3.4e-11 Score=114.72 Aligned_cols=91 Identities=22% Similarity=0.348 Sum_probs=74.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec-----------------CceEEEEeCCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK-----------------YLRWQVIDTPGILDHS 299 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~-----------------~~~~~liDTPG~~~~~ 299 (358)
....+++||.||||||||+|+||......+++||||.++..+.+... ...+++.|++|+....
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 56799999999999999999999999889999999999999877653 1256899999999775
Q ss_pred cchHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 300 ~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
..... +.-..++.+++. |++++|+++++
T Consensus 99 s~G~G-LGN~FLs~iR~v-DaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEG-LGNKFLSHIRHV-DAIFHVVRAFE 126 (391)
T ss_pred ccCcC-chHHHHHhhhhc-cceeEEEEecC
Confidence 54432 222356677777 99999999887
No 154
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.24 E-value=5.3e-11 Score=103.35 Aligned_cols=108 Identities=16% Similarity=0.106 Sum_probs=66.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||+|+|++........+ +..+.........+ ..+++|||||...... .....+..
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~--------~~~~~~~~- 71 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVP-TVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR--------LRPLSYPN- 71 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeEEEEEECCEEEEEEEEeCCCcccccc--------cchhhcCC-
Confidence 689999999999999999998775322222 22222222233333 3689999999864311 11112233
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
+|++++|+|+++...+.. ....++..+.....++|+++|.
T Consensus 72 ~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~ 111 (171)
T cd00157 72 TDVFLICFSVDSPSSFEN-VKTKWIPEIRHYCPNVPIILVG 111 (171)
T ss_pred CCEEEEEEECCCHHHHHH-HHHHHHHHHHhhCCCCCEEEEE
Confidence 499999999987433211 1223455554444579998873
No 155
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.24 E-value=9.6e-11 Score=100.84 Aligned_cols=105 Identities=20% Similarity=0.244 Sum_probs=65.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec-CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK-YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLR 318 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~ 318 (358)
.|+++|.+|||||||+|++++.... ...| |.......+... ...+.+|||||... ........+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~~~~- 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIP--TVGFNVEMLQLEKHLSLTVWDVGGQEK--------MRTVWKCYLENT- 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccC--ccCcceEEEEeCCceEEEEEECCCCHh--------HHHHHHHHhccC-
Confidence 3789999999999999999987753 2222 222333333333 35789999999842 222233345554
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEeC
Q psy15712 319 AAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLEY 358 (358)
Q Consensus 319 d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilvf 358 (358)
|++++|+|++++. +......++.++.. ...+.|+++|.
T Consensus 69 ~~iv~v~D~~~~~--~~~~~~~~~~~~~~~~~~~~~piilv~ 108 (160)
T cd04156 69 DGLVYVVDSSDEA--RLDESQKELKHILKNEHIKGVPVVLLA 108 (160)
T ss_pred CEEEEEEECCcHH--HHHHHHHHHHHHHhchhhcCCCEEEEE
Confidence 9999999998753 23333334444322 22578988873
No 156
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.23 E-value=5.1e-11 Score=116.79 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=72.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCc-----------------eEEEEeCCCCCCCCc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYL-----------------RWQVIDTPGILDHSL 300 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTPG~~~~~~ 300 (358)
..+++||.||+|||||+|+||+..+ .+++|||||..+..|.+.+.+. .++++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5789999999999999999999998 8999999999999999887653 579999999987643
Q ss_pred chHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 301 EDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 301 ~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
.... +.......+++. |++++|+|+.+
T Consensus 83 ~g~G-lgn~fL~~ir~~-d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEG-LGNQFLANIREV-DIIQHVVRCFE 109 (368)
T ss_pred cccC-cchHHHHHHHhC-CEEEEEEeCCC
Confidence 3221 122345556666 99999999975
No 157
>KOG1486|consensus
Probab=99.23 E-value=9.1e-12 Score=114.27 Aligned_cols=94 Identities=29% Similarity=0.462 Sum_probs=77.1
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
.+..+|+++|+|.||||||+.++++.+.+.+.|.|||..+..|.+.++|-.+|+.|.||++......+.. .++. .+..
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGR-GRQv-iavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGR-GRQV-IAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCC-CceE-EEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999764333221 1122 2334
Q ss_pred hcccEEEEEEeCCCCC
Q psy15712 316 HLRAAVLYFIDISEQC 331 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~ 331 (358)
..+|+||.|+|++...
T Consensus 138 rtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 138 RTADLILMVLDATKSE 153 (364)
T ss_pred ecccEEEEEecCCcch
Confidence 4569999999998743
No 158
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.22 E-value=1.4e-10 Score=103.19 Aligned_cols=107 Identities=19% Similarity=0.119 Sum_probs=69.3
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||++++.+..... .+..|........+.+++. .+++|||||.... ......+++.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~--------~~~~~~~~~~ 72 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPE-TYVPTVFENYTASFEIDEQRIELSLWDTSGSPYY--------DNVRPLCYPD 72 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCC-CcCCceEEEEEEEEEECCEEEEEEEEECCCchhh--------hhcchhhcCC
Confidence 469999999999999999999876543 3333322222334445544 5789999997321 1112234444
Q ss_pred cccEEEEEEeCCCCCCCCHHHH-HHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQ-IGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q-~~ll~~i~~~f~~kPvilv 357 (358)
. |++++|+|++++..+ +.. -.|+..+....++.|++||
T Consensus 73 a-~~~ilvfdit~~~Sf--~~~~~~w~~~i~~~~~~~~iilV 111 (178)
T cd04131 73 S-DAVLICFDISRPETL--DSVLKKWRGEIQEFCPNTKVLLV 111 (178)
T ss_pred C-CEEEEEEECCChhhH--HHHHHHHHHHHHHHCCCCCEEEE
Confidence 4 999999999986544 332 3566666554457888876
No 159
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.22 E-value=1.8e-11 Score=117.08 Aligned_cols=65 Identities=32% Similarity=0.426 Sum_probs=53.3
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDR 303 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~ 303 (358)
....+++++|+||||||||+|+|++.+. .+++.|++|++.+.... +..+.++||||+..+...+.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~~~~~ 184 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL---GKGLELLDTPGILWPKLEDQ 184 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe---CCcEEEEECCCcCCCCCCcH
Confidence 3467899999999999999999999885 78999999999864332 34789999999987755443
No 160
>KOG0084|consensus
Probab=99.22 E-value=1.1e-10 Score=103.69 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=80.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
..++|+++|.+|||||+|+-++++..+.-.-..+...+.....+.++|. ++|||||+|.- .+...+.+++
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE--------RFrtit~syY 79 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE--------RFRTITSSYY 79 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccH--------HHhhhhHhhc
Confidence 4578999999999999999999987765444444445566666777765 67999999993 2334456677
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
+.. ++||+|+|++...++ ...-.|+.++...- .+.|.++|
T Consensus 80 R~a-hGii~vyDiT~~~SF--~~v~~Wi~Ei~~~~~~~v~~lLV 120 (205)
T KOG0084|consen 80 RGA-HGIIFVYDITKQESF--NNVKRWIQEIDRYASENVPKLLV 120 (205)
T ss_pred cCC-CeEEEEEEcccHHHh--hhHHHHHHHhhhhccCCCCeEEE
Confidence 777 999999999985544 34456888886532 35577665
No 161
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.22 E-value=1.1e-10 Score=101.90 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=67.6
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||++++.+.... ..+..++.......+.+++ ..+++|||||..... ......+..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~~ 72 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI-ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT--------AMRELYIKS 72 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcchheEEEEEEECCEEEEEEEEeCCCcccch--------hhhHHHHhh
Confidence 47999999999999999999976643 2333344333344444544 367899999975321 112223344
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
++++++|+|++++. +.+....+...+... -.+.|++++
T Consensus 73 -~~~~vlv~~~~~~~--s~~~~~~~~~~i~~~~~~~~~piiiv 112 (168)
T cd04177 73 -GQGFLLVYSVTSEA--SLNELGELREQVLRIKDSDNVPMVLV 112 (168)
T ss_pred -CCEEEEEEECCCHH--HHHHHHHHHHHHHHhhCCCCCCEEEE
Confidence 48999999998743 334444445544322 236898876
No 162
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.22 E-value=2.1e-10 Score=101.10 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=67.6
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||++++.+.++.. .+..|+.......+.+++. .+++|||||... .......++..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~l~~~~~~~ 73 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD-YHDPTIEDAYKQQARIDNEPALLDILDTAGQAE--------FTAMRDQYMRC 73 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC-CcCCcccceEEEEEEECCEEEEEEEEeCCCchh--------hHHHhHHHhhc
Confidence 579999999999999999999876542 2222332333334455553 578999999842 12223344555
Q ss_pred cccEEEEEEeCCCCCCCCHHH-HHHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQE-QIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~-q~~ll~~i~~~f~~kPvilv 357 (358)
. |++++|+|+++..++.... ....+..... ..+.|+++|
T Consensus 74 ~-d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv 113 (172)
T cd04141 74 G-EGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLV 113 (172)
T ss_pred C-CEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEE
Confidence 4 9999999999866543322 1223333321 246898876
No 163
>PLN03108 Rab family protein; Provisional
Probab=99.22 E-value=1.9e-10 Score=104.87 Aligned_cols=109 Identities=18% Similarity=0.081 Sum_probs=71.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++..+.....++.+.+.....+.+++. .+++|||||... ...+....+.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~--------~~~~~~~~~~ 77 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--------FRSITRSYYR 77 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHH--------HHHHHHHHhc
Confidence 468999999999999999999987765444444444444445555553 578999999732 2223334455
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
.. |++++|+|+++...+ .....++..+... ..+.|+++|
T Consensus 78 ~a-d~~vlv~D~~~~~s~--~~l~~~~~~~~~~~~~~~piiiv 117 (210)
T PLN03108 78 GA-AGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLI 117 (210)
T ss_pred cC-CEEEEEEECCcHHHH--HHHHHHHHHHHHhcCCCCcEEEE
Confidence 54 999999999885533 2222444444322 236788876
No 164
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.21 E-value=1.7e-10 Score=101.63 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=66.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||++++++..... .+..++.......+.+.+. .+++|||||..+ +.......+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~ 72 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE-SYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE--------YSILPQKYSIG 72 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc-ccCcchhhhEEEEEEECCEEEEEEEEECCChHh--------hHHHHHHHHhh
Confidence 479999999999999999999876533 2333443333344445443 568999999742 12222233344
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
. +++++|+|+++.. +.+....++..+... ..+.|++++
T Consensus 73 ~-~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv 112 (180)
T cd04137 73 I-HGYILVYSVTSRK--SFEVVKVIYDKILDMLGKESVPIVLV 112 (180)
T ss_pred C-CEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4 8999999998733 233333333433322 135788876
No 165
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.21 E-value=1.5e-10 Score=109.76 Aligned_cols=104 Identities=18% Similarity=0.134 Sum_probs=71.7
Q ss_pred EEEEecCCCCCHHHHHHHHh---CCCC---cc------------cCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc
Q psy15712 240 TIIICGFPNVGKSSFLNKIT---RADV---DV------------QPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE 301 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~---~~~~---~v------------~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 301 (358)
+|+++|.+|+|||||+|+|. |..- .+ ....++|.+....++.|++.++.+|||||..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 48999999999999999996 3110 01 123477888888889999999999999998542
Q ss_pred hHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 302 DRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 302 ~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
...+..++... |++++|+|++....... ..++..+... ++|++++
T Consensus 78 -----~~~~~~~l~~a-D~ailVVDa~~g~~~~t---~~~~~~~~~~--~~p~ivv 122 (270)
T cd01886 78 -----TIEVERSLRVL-DGAVAVFDAVAGVEPQT---ETVWRQADRY--NVPRIAF 122 (270)
T ss_pred -----HHHHHHHHHHc-CEEEEEEECCCCCCHHH---HHHHHHHHHc--CCCEEEE
Confidence 12244566666 99999999988543222 2333333332 6787764
No 166
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.21 E-value=2.2e-10 Score=102.39 Aligned_cols=109 Identities=18% Similarity=0.148 Sum_probs=71.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||++++.+..... .+..|........+..++. .+++|||+|... .......++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~-~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~--------~~~~~~~~~ 74 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQRIELSLWDTSGSPY--------YDNVRPLSY 74 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCC-ccCCceeeeeEEEEEECCEEEEEEEEECCCchh--------hHhhhhhhc
Confidence 35689999999999999999999876532 3332332222334445544 678999999732 122223344
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHH-HHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQ-IGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q-~~ll~~i~~~f~~kPvilv 357 (358)
+.. |++++|+|++++.. .+.. -.|+..+....++.|++||
T Consensus 75 ~~a-d~~ilvyDit~~~S--f~~~~~~w~~~i~~~~~~~piilV 115 (182)
T cd04172 75 PDS-DAVLICFDISRPET--LDSVLKKWKGEIQEFCPNTKMLLV 115 (182)
T ss_pred CCC-CEEEEEEECCCHHH--HHHHHHHHHHHHHHHCCCCCEEEE
Confidence 555 99999999998543 3332 3566666654557888886
No 167
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.20 E-value=1.8e-10 Score=100.47 Aligned_cols=107 Identities=16% Similarity=0.182 Sum_probs=67.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
+..+|+++|.+|||||||+++|++..... ...|.+.....+.+.+..+.+|||||... ........+..
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 81 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDGFKLNVWDIGGQRA--------IRPYWRNYFEN 81 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECCEEEEEEECCCCHH--------HHHHHHHHhcC
Confidence 36789999999999999999999875431 12234444455667788999999999732 11222233444
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
. |++++|+|+++.... .....++..+.. ...++|++++
T Consensus 82 ~-~~ii~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv 121 (173)
T cd04155 82 T-DCLIYVIDSADKKRL--EEAGAELVELLEEEKLAGVPVLVF 121 (173)
T ss_pred C-CEEEEEEeCCCHHHH--HHHHHHHHHHHhChhhcCCCEEEE
Confidence 4 899999999874322 222223222221 1236788775
No 168
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.20 E-value=1.6e-10 Score=100.81 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=64.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe--cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY--KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||+|++.+.+.. ..++.++.+.. ....+ ...++++|||||..... ......+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~~- 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEIT-IPADVTPERVPTTIVDTSSRPQDR--------ANLAAEIRK- 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCcccceE-eeeeecCCeEEEEEEeCCCchhhh--------HHHhhhccc-
Confidence 6899999999999999999987653 22443322221 21222 33478899999974321 112233444
Q ss_pred ccEEEEEEeCCCCCCCCHHHH-HHHHHHHcccCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQ-IGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q-~~ll~~i~~~f~~kPvilv 357 (358)
+|++++|+|++++..+ +.. ..|+..++....+.|+++|
T Consensus 71 ad~~ilv~d~~~~~s~--~~~~~~~~~~i~~~~~~~pviiv 109 (166)
T cd01893 71 ANVICLVYSVDRPSTL--ERIRTKWLPLIRRLGVKVPIILV 109 (166)
T ss_pred CCEEEEEEECCCHHHH--HHHHHHHHHHHHHhCCCCCEEEE
Confidence 4999999999875432 221 1344444433346888886
No 169
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.20 E-value=1.4e-10 Score=101.89 Aligned_cols=109 Identities=15% Similarity=0.031 Sum_probs=70.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCccee-eeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTK-SLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~-~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
+..+|+++|.+|||||||++++++..+.+..+..|+. +.....+.+++. .+++|||+|..... .....+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--------~~~~~~ 74 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI--------LLNDAE 74 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc--------ccchhh
Confidence 4568999999999999999999988765344444433 333344555553 57899999975321 112234
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+... |++++|+|++++. +.+....++..+... .+.|+++|
T Consensus 75 ~~~~-d~~llv~d~~~~~--s~~~~~~~~~~~~~~-~~~p~iiv 114 (169)
T cd01892 75 LAAC-DVACLVYDSSDPK--SFSYCAEVYKKYFML-GEIPCLFV 114 (169)
T ss_pred hhcC-CEEEEEEeCCCHH--HHHHHHHHHHHhccC-CCCeEEEE
Confidence 4454 9999999998753 233333455554322 36898886
No 170
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.20 E-value=1.8e-10 Score=98.74 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=65.4
Q ss_pred EEEecCCCCCHHHHHHHHhCCC--CcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc--hHHHHHHHHHHHHhh
Q psy15712 241 IIICGFPNVGKSSFLNKITRAD--VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE--DRNIIEMQAVTALAH 316 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~~--~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~--~~~~ie~~~~~~l~~ 316 (358)
|+++|.+|+|||||+|+|++.. ...++.+++|...... ... ..+++|||||+...... ....+......++..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--Ecc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999433 3466666666655433 233 38899999998765221 112222222223322
Q ss_pred c--ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 317 L--RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~--~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
. .+++++|+|.+............++... +.|++++
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v 116 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVV 116 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEE
Confidence 2 2678999998765432222223333332 4677665
No 171
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.19 E-value=1.8e-10 Score=107.86 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=69.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||++++++..+.. .+..|+.+.....+.+++. .+++|||+|..+.. .....++...
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~-~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~--------~~~~~~~~~a 72 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE-QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP--------AMRRLSILTG 72 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC-CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh--------HHHHHHhccC
Confidence 68999999999999999999776543 3444444555555566664 56799999974321 1111233344
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcc----------cCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRP----------LFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~----------~f~~kPvilv 357 (358)
|++++|+|+++.. +.+....+++++.. ...++|+|++
T Consensus 73 -d~iIlVfdv~~~~--Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIiv 119 (247)
T cd04143 73 -DVFILVFSLDNRE--SFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119 (247)
T ss_pred -CEEEEEEeCCCHH--HHHHHHHHHHHHHHhhcccccccccCCCCcEEEE
Confidence 9999999999843 34444445555432 2246898886
No 172
>PLN03118 Rab family protein; Provisional
Probab=99.19 E-value=1.7e-10 Score=104.95 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=57.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+++|++..+. ...|.++.+.....+.+++ ..+++|||||.... ......+++
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~~~~~~~ 84 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF--------RTLTSSYYR 84 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhh--------HHHHHHHHh
Confidence 568999999999999999999987653 1223333333344444544 36789999997432 222334555
Q ss_pred hcccEEEEEEeCCCCC
Q psy15712 316 HLRAAVLYFIDISEQC 331 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~ 331 (358)
.. |++++|+|+++..
T Consensus 85 ~~-d~~vlv~D~~~~~ 99 (211)
T PLN03118 85 NA-QGIILVYDVTRRE 99 (211)
T ss_pred cC-CEEEEEEECCCHH
Confidence 55 9999999998754
No 173
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.19 E-value=3e-10 Score=103.29 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=64.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec-----C--ceEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK-----Y--LRWQVIDTPGILDHSLEDRNIIEMQAVT 312 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~-----~--~~~~liDTPG~~~~~~~~~~~ie~~~~~ 312 (358)
+|+++|.+|||||||++++++..+.....|+...+.....+.++ + ..+++|||+|... .......
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~--------~~~l~~~ 73 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES--------VKSTRAV 73 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh--------HHHHHHH
Confidence 68999999999999999999877654433333333444444442 2 3679999999842 2222334
Q ss_pred HHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHc
Q psy15712 313 ALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIR 346 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~ 346 (358)
+++.. |++++|+|+++.. +.+....|+.++.
T Consensus 74 ~yr~a-d~iIlVyDvtn~~--Sf~~l~~W~~ei~ 104 (202)
T cd04102 74 FYNQV-NGIILVHDLTNRK--SSQNLQRWSLEAL 104 (202)
T ss_pred HhCcC-CEEEEEEECcChH--HHHHHHHHHHHHH
Confidence 55555 9999999999954 4444445666664
No 174
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.18 E-value=1.9e-10 Score=104.07 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=65.7
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCC----------------cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcch
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADV----------------DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLED 302 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~----------------~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~ 302 (358)
.+|+++|.+|+|||||+++|++... ......++|.+.....+.+++.++.++||||..+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 5799999999999999999985310 0111457788777777777788999999999842
Q ss_pred HHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHH
Q psy15712 303 RNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLF 342 (358)
Q Consensus 303 ~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll 342 (358)
+...+..++... |++++|+|++........+.+.++
T Consensus 78 ---~~~~~~~~~~~~-D~~ilVvda~~g~~~~~~~~~~~~ 113 (195)
T cd01884 78 ---YIKNMITGAAQM-DGAILVVSATDGPMPQTREHLLLA 113 (195)
T ss_pred ---HHHHHHHHhhhC-CEEEEEEECCCCCcHHHHHHHHHH
Confidence 222344555555 999999999875433333333333
No 175
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.18 E-value=1.7e-10 Score=101.28 Aligned_cols=106 Identities=17% Similarity=0.101 Sum_probs=69.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+++++|.+|+|||||++++.+.... ..++.|+.+.....+..++ ..+++|||||..... .....+++..
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~~a 72 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP-TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFD--------KLRPLCYPDT 72 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhc--------cccccccCCC
Confidence 5899999999999999999876543 3455555555444555555 367899999984321 1111233444
Q ss_pred ccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
|++++|+|++++..+ +... .++..+.....+.|++++
T Consensus 73 -~~~i~v~d~~~~~sf--~~~~~~~~~~~~~~~~~~piilv 110 (173)
T cd04130 73 -DVFLLCFSVVNPSSF--QNISEKWIPEIRKHNPKAPIILV 110 (173)
T ss_pred -cEEEEEEECCCHHHH--HHHHHHHHHHHHhhCCCCCEEEE
Confidence 999999999985543 2322 356666554457888876
No 176
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.17 E-value=3.1e-10 Score=100.25 Aligned_cols=107 Identities=16% Similarity=0.115 Sum_probs=67.2
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||+.++.+..... .+..|..+.....+..++ ..+++|||||.... ......++..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~ 72 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY--------DRLRPLSYPQ 72 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-cCCCcceeeeEEEEEECCEEEEEEEEECCCchhh--------hhhhhhhcCC
Confidence 479999999999999999999766432 232233333222334444 36789999997322 1122234555
Q ss_pred cccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
. |++++|+|++++..+ .... .|+..+.....+.|+++|
T Consensus 73 ~-d~~ilv~d~~~~~sf--~~~~~~~~~~~~~~~~~~piilv 111 (174)
T cd01871 73 T-DVFLICFSLVSPASF--ENVRAKWYPEVRHHCPNTPIILV 111 (174)
T ss_pred C-CEEEEEEECCCHHHH--HHHHHHHHHHHHHhCCCCCEEEE
Confidence 4 999999999985433 2221 255545443346898886
No 177
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.17 E-value=4.3e-10 Score=104.38 Aligned_cols=108 Identities=16% Similarity=0.078 Sum_probs=70.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||++++++..+.....| |........+..++ ..++||||+|... .......+++
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~p-Ti~~~~~~~i~~~~~~v~l~iwDTaG~e~--------~~~~~~~~~~ 83 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVP-TVFENYTAGLETEEQRVELSLWDTSGSPY--------YDNVRPLCYS 83 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCC-ceeeeeEEEEEECCEEEEEEEEeCCCchh--------hHHHHHHHcC
Confidence 46899999999999999999998765432223 22222222344444 3679999999732 2222334555
Q ss_pred hcccEEEEEEeCCCCCCCCHHH-HHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQE-QIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~-q~~ll~~i~~~f~~kPvilv 357 (358)
.. |++++|+|+++...+ +. .-.|+..+.....+.|+|||
T Consensus 84 ~a-d~vIlVyDit~~~Sf--~~~~~~w~~~i~~~~~~~piilV 123 (232)
T cd04174 84 DS-DAVLLCFDISRPETV--DSALKKWKAEIMDYCPSTRILLI 123 (232)
T ss_pred CC-cEEEEEEECCChHHH--HHHHHHHHHHHHHhCCCCCEEEE
Confidence 55 999999999985443 32 23466666544456788876
No 178
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.17 E-value=4.4e-11 Score=113.76 Aligned_cols=64 Identities=31% Similarity=0.373 Sum_probs=52.3
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCC-CcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcch
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLED 302 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~ 302 (358)
....+++++|+||||||||+|+|++.+ ..+++.|++|+..+...+ +..++++||||+......+
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKFED 180 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCCCc
Confidence 345789999999999999999999887 468999999998765443 2478999999998765444
No 179
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.17 E-value=2.8e-10 Score=118.54 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=75.3
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc-eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 235 DPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL-RWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 235 ~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~-~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
.++.++|+++|.+|+|||||+++|.+.++.....++.|.+.....+.+.+. .+.+|||||..+.. ......
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~--------~~r~rg 155 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT--------SMRARG 155 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchh--------hHHHhh
Confidence 346789999999999999999999998876666677888777666777555 89999999985321 111223
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
... .|++++|+|+++.......+ .+..... .+.|++++
T Consensus 156 a~~-aDiaILVVda~dgv~~qT~e---~i~~~~~--~~vPiIVv 193 (587)
T TIGR00487 156 AKV-TDIVVLVVAADDGVMPQTIE---AISHAKA--ANVPIIVA 193 (587)
T ss_pred hcc-CCEEEEEEECCCCCCHhHHH---HHHHHHH--cCCCEEEE
Confidence 333 49999999998754322222 2333222 26787765
No 180
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.17 E-value=5.3e-10 Score=105.94 Aligned_cols=105 Identities=20% Similarity=0.233 Sum_probs=66.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCC---c-------------ccCCC------cceeeeEEEEEEecCceEEEEeCCCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADV---D-------------VQPYA------FTTKSLYVGHTDYKYLRWQVIDTPGIL 296 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~---~-------------v~~~~------~tT~~~~~~~~~~~~~~~~liDTPG~~ 296 (358)
++|+++|.+|+|||||+++|+.... . +.++. +.|.......+.+++.++.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5799999999999999999974211 0 11111 233345556778889999999999985
Q ss_pred CCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 297 DHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 297 ~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+.. ..+..+++.. |++++|+|++.......+ .++..... .++|++++
T Consensus 83 df~--------~~~~~~l~~a-D~~IlVvda~~g~~~~~~---~i~~~~~~--~~~P~iiv 129 (267)
T cd04169 83 DFS--------EDTYRTLTAV-DSAVMVIDAAKGVEPQTR---KLFEVCRL--RGIPIITF 129 (267)
T ss_pred HHH--------HHHHHHHHHC-CEEEEEEECCCCccHHHH---HHHHHHHh--cCCCEEEE
Confidence 321 1234455555 999999999874322121 23332222 26787664
No 181
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.16 E-value=3.1e-10 Score=107.33 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=67.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCc------c------cCC------CcceeeeEEEEEEecCceEEEEeCCCCCCCCcc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVD------V------QPY------AFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE 301 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~------v------~~~------~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 301 (358)
+|+++|.+|+|||||+|+|.+.... + .++ .+.|.......+.+++.++.+|||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 4899999999999999999743211 1 111 134455566777888889999999998531
Q ss_pred hHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 302 DRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 302 ~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
...+..++... |++++|+|++..........++ .+... ++|++++
T Consensus 78 -----~~~~~~~l~~a-D~~i~Vvd~~~g~~~~~~~~~~---~~~~~--~~p~iiv 122 (268)
T cd04170 78 -----VGETRAALRAA-DAALVVVSAQSGVEVGTEKLWE---FADEA--GIPRIIF 122 (268)
T ss_pred -----HHHHHHHHHHC-CEEEEEEeCCCCCCHHHHHHHH---HHHHc--CCCEEEE
Confidence 22344555555 9999999998854433333333 33222 5677765
No 182
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.16 E-value=3.6e-10 Score=103.94 Aligned_cols=106 Identities=18% Similarity=0.193 Sum_probs=65.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCccee-eeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTK-SLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~-~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
+|+++|.+|||||||++++++.......++.+.. +.....+.+.+ ..+++|||||... .+. ...+..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~-------~~~---~~~~~~ 71 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM-------WTE---DSCMQY 71 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch-------HHH---hHHhhc
Confidence 6899999999999999999876654233332221 33334444433 4688999999951 111 112331
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
.+|++++|+|++++..+ .....++..+... ..++|+|+|
T Consensus 72 ~ad~iilV~d~td~~S~--~~~~~~~~~l~~~~~~~~~piilV 112 (221)
T cd04148 72 QGDAFVVVYSVTDRSSF--ERASELRIQLRRNRQLEDRPIILV 112 (221)
T ss_pred CCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEE
Confidence 44999999999986543 3223344444332 246899887
No 183
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.16 E-value=2.5e-10 Score=99.78 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=67.5
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||++++.+..... .+..|........+.+++. .+.+|||||.... .......+..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~ 72 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEVDGKQVELALWDTAGQEDY--------DRLRPLSYPD 72 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccccceEEEEEECCEEEEEEEEeCCCchhh--------hhccccccCC
Confidence 479999999999999999999876532 2333333333345555554 5689999997421 1111123333
Q ss_pred cccEEEEEEeCCCCCCCCHHHH-HHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQ-IGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q-~~ll~~i~~~f~~kPvilv 357 (358)
. |++++|+|+++..++ +.. ..++..+.....+.|+++|
T Consensus 73 ~-d~~i~v~~~~~~~s~--~~~~~~~~~~~~~~~~~~piilv 111 (175)
T cd01870 73 T-DVILMCFSIDSPDSL--ENIPEKWTPEVKHFCPNVPIILV 111 (175)
T ss_pred C-CEEEEEEECCCHHHH--HHHHHHHHHHHHhhCCCCCEEEE
Confidence 3 899999999875432 221 1245555544457898886
No 184
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.16 E-value=1.5e-10 Score=101.12 Aligned_cols=107 Identities=14% Similarity=0.069 Sum_probs=66.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|+|||||++++++.... ..+..++.+.....+..++. .+.+|||||...... .....+...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~ 72 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR--------LRPLSYPMT 72 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc--------cccccCCCC
Confidence 6899999999999999999987653 22333333333334445554 467999999754211 111223333
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
|++++|+|++++..+... ...++..+.....++|+++|
T Consensus 73 -~~~ilv~~~~~~~s~~~~-~~~~~~~l~~~~~~~piivv 110 (174)
T cd04135 73 -DVFLICFSVVNPASFQNV-KEEWVPELKEYAPNVPYLLV 110 (174)
T ss_pred -CEEEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCEEEE
Confidence 899999999885443211 12345555443457898886
No 185
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.16 E-value=5e-10 Score=99.84 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=63.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||++++.+..+.....|+...+.....+..++ ..+++|||+|.... ......++++.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~--------~~~~~~~~~~a 73 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF--------INMLPLVCNDA 73 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhH--------HHhhHHHCcCC
Confidence 689999999999999999998765433334333344444555555 36799999998421 11222344554
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRP 347 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~ 347 (358)
|++++|+|++++.++ .....++..+..
T Consensus 74 -~~iilv~D~t~~~s~--~~i~~~~~~~~~ 100 (182)
T cd04128 74 -VAILFMFDLTRKSTL--NSIKEWYRQARG 100 (182)
T ss_pred -CEEEEEEECcCHHHH--HHHHHHHHHHHH
Confidence 999999999985433 333345555543
No 186
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.15 E-value=6.8e-11 Score=102.74 Aligned_cols=56 Identities=34% Similarity=0.450 Sum_probs=46.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~ 295 (358)
...+|+++|.||||||||+|+|.+... .+++.|++|++...... +..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 346889999999999999999998774 68999999988664332 346899999996
No 187
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.15 E-value=3.3e-10 Score=121.11 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=77.3
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 235 DPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 235 ~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
.++.++|+++|.+|+|||||+++|.+.++..+..++.|.+.....+.+++..+.+|||||..+.. ......+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~--------~m~~rga 358 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT--------AMRARGA 358 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccch--------hHHHhhh
Confidence 45788999999999999999999998777666667778777777778888899999999985431 1112233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.. .|++++|+|+++.......+.+ ..... .+.|+|++
T Consensus 359 ~~-aDiaILVVdAddGv~~qT~e~i---~~a~~--~~vPiIVv 395 (787)
T PRK05306 359 QV-TDIVVLVVAADDGVMPQTIEAI---NHAKA--AGVPIIVA 395 (787)
T ss_pred hh-CCEEEEEEECCCCCCHhHHHHH---HHHHh--cCCcEEEE
Confidence 33 4999999999875433232223 22222 26787765
No 188
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.15 E-value=4.9e-10 Score=103.33 Aligned_cols=107 Identities=19% Similarity=0.160 Sum_probs=68.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||++++++..+... +..|........+.+++. .+.+|||+|... .......++..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~-y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~--------~~~l~~~~~~~ 72 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGS-YVPTVFENYTASFEIDKRRIELNMWDTSGSSY--------YDNVRPLAYPD 72 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCc-cCCccccceEEEEEECCEEEEEEEEeCCCcHH--------HHHHhHHhccC
Confidence 4799999999999999999998765332 333332222234445544 578999999832 22223334455
Q ss_pred cccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
. |++|+|+|++++.. .+... .|...+.....+.|+|||
T Consensus 73 ~-d~illvfdis~~~S--f~~i~~~w~~~~~~~~~~~piiLV 111 (222)
T cd04173 73 S-DAVLICFDISRPET--LDSVLKKWQGETQEFCPNAKVVLV 111 (222)
T ss_pred C-CEEEEEEECCCHHH--HHHHHHHHHHHHHhhCCCCCEEEE
Confidence 5 99999999998543 33322 344555544567899887
No 189
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.14 E-value=3.5e-10 Score=97.55 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=72.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||++++.+........++...+.....+..++. .+++|||+|... ........+...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--------~~~~~~~~~~~~ 72 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQER--------FDSLRDIFYRNS 72 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGG--------GHHHHHHHHTTE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccc--------cccccccccccc
Confidence 4899999999999999999987654333333335555556666554 578999999732 111222345555
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCC-CCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFN-NKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~-~kPvilv 357 (358)
|++++|+|++++. +.+....|+..+..... +.|++++
T Consensus 73 -~~~ii~fd~~~~~--S~~~~~~~~~~i~~~~~~~~~iivv 110 (162)
T PF00071_consen 73 -DAIIIVFDVTDEE--SFENLKKWLEEIQKYKPEDIPIIVV 110 (162)
T ss_dssp -SEEEEEEETTBHH--HHHTHHHHHHHHHHHSTTTSEEEEE
T ss_pred -ccccccccccccc--cccccccccccccccccccccceee
Confidence 9999999998843 34444467777665554 5788876
No 190
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.14 E-value=6.5e-10 Score=99.71 Aligned_cols=108 Identities=14% Similarity=0.081 Sum_probs=68.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||++++....+.....| |..+.....+..++ ..+++|||||... .......+++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~--------~~~l~~~~~~ 73 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIP-TVFDNYSAQTAVDGRTVSLNLWDTAGQEE--------YDRLRTLSYP 73 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCC-ceEeeeEEEEEECCEEEEEEEEECCCchh--------hhhhhhhhcc
Confidence 35899999999999999999997665322222 22222222334444 3678999999842 2222333445
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
.. |++++|+|++++.++ +... .|+..+.....+.|++||
T Consensus 74 ~a-~~~ilvydit~~~Sf--~~~~~~w~~~i~~~~~~~piilv 113 (191)
T cd01875 74 QT-NVFIICFSIASPSSY--ENVRHKWHPEVCHHCPNVPILLV 113 (191)
T ss_pred CC-CEEEEEEECCCHHHH--HHHHHHHHHHHHhhCCCCCEEEE
Confidence 54 999999999985543 3322 355555544457898886
No 191
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.13 E-value=3.7e-10 Score=100.97 Aligned_cols=107 Identities=17% Similarity=0.096 Sum_probs=66.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||++++++..+.....|+ ........+..++ ..+++|||||..... .....++...
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t-~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--------~l~~~~~~~a 72 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPT-VFENYVHDIFVDGLHIELSLWDTAGQEEFD--------RLRSLSYADT 72 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCc-ceeeeEEEEEECCEEEEEEEEECCCChhcc--------ccccccccCC
Confidence 6899999999999999999987653222222 2122222333444 467999999984321 1111233444
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
|++++|+|+++...+.... ..|+..+.....+.|+++|
T Consensus 73 -~~~ilv~dv~~~~sf~~~~-~~~~~~i~~~~~~~piilv 110 (189)
T cd04134 73 -DVIMLCFSVDSPDSLENVE-SKWLGEIREHCPGVKLVLV 110 (189)
T ss_pred -CEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCEEEE
Confidence 9999999999865432111 2356666654457898886
No 192
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.13 E-value=5e-10 Score=103.16 Aligned_cols=104 Identities=17% Similarity=0.106 Sum_probs=65.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
+|+++|.+|||||||++++.+.++.. ..| |.........+....+.+|||||..... .....+++.. |
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~--------~l~~~~~~~a-d 69 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVS--TVGGAFYLKQWGPYNISIWDTAGREQFH--------GLGSMYCRGA-A 69 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCC--ccceEEEEEEeeEEEEEEEeCCCcccch--------hhHHHHhccC-C
Confidence 68999999999999999999877642 233 3322222333445678999999984321 1122344555 9
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 320 AVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 320 ~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
++++|+|++++..+ +....++..+... ..+.|+|||
T Consensus 70 ~~IlV~Dvt~~~Sf--~~l~~~~~~l~~~~~~~~piIlV 106 (220)
T cd04126 70 AVILTYDVSNVQSL--EELEDRFLGLTDTANEDCLFAVV 106 (220)
T ss_pred EEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEE
Confidence 99999999985443 3322333333321 235788776
No 193
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.13 E-value=5.3e-10 Score=104.09 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=67.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCc------cc------C------CCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVD------VQ------P------YAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE 301 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~------v~------~------~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 301 (358)
+|+++|.+|+|||||+++|+..... +. + .-+.|.......+.+++.++.+|||||..+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 4899999999999999999743210 11 1 11334555667778888999999999996421
Q ss_pred hHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 302 DRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 302 ~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
..+..+++.. |++++|+|+++......+. ++..+... ++|++++
T Consensus 79 ------~~~~~~l~~a-D~~IlVvd~~~g~~~~~~~---~~~~~~~~--~~P~iiv 122 (237)
T cd04168 79 ------AEVERSLSVL-DGAILVISAVEGVQAQTRI---LWRLLRKL--NIPTIIF 122 (237)
T ss_pred ------HHHHHHHHHh-CeEEEEEeCCCCCCHHHHH---HHHHHHHc--CCCEEEE
Confidence 1234456665 9999999999854322222 23333222 6787765
No 194
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.13 E-value=8.2e-10 Score=100.30 Aligned_cols=107 Identities=14% Similarity=0.233 Sum_probs=65.6
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe----cCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY----KYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~----~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
++|+++|.+|||||||+++|++..... .++.++ ........ .+..+.+|||||... +.......+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-t~~s~~--~~~~~~~~~~~~~~~~~~l~D~pG~~~--------~~~~~~~~~ 69 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS-TVTSIE--PNVATFILNSEGKGKKFRLVDVPGHPK--------LRDKLLETL 69 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC-ccCcEe--ecceEEEeecCCCCceEEEEECCCCHH--------HHHHHHHHH
Confidence 479999999999999999999875421 122222 22222222 356899999999842 222233444
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHc----ccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIR----PLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~----~~f~~kPvilv 357 (358)
....++++||+|++... ....+..+++..+. ....+.|++++
T Consensus 70 ~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv 115 (203)
T cd04105 70 KNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIA 115 (203)
T ss_pred hccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEE
Confidence 44448999999998842 22333333333321 11247898886
No 195
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.12 E-value=5e-10 Score=97.57 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=56.1
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEE-------------e-------------------------
Q psy15712 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTD-------------Y------------------------- 282 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~-------------~------------------------- 282 (358)
|+++|..++|||||+|+|+|..+...+...+|..+..-+.. +
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999999875433333344433322111 0
Q ss_pred ------------------cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCC
Q psy15712 283 ------------------KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCG 332 (358)
Q Consensus 283 ------------------~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~ 332 (358)
....+.|+||||+.+...... ..+..++.+. |++|||+++++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~----~~~~~~~~~~-d~vi~V~~~~~~~~ 143 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT----EITEEYLPKA-DVVIFVVDANQDLT 143 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS----HHHHHHHSTT-EEEEEEEETTSTGG
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH----HHHHHhhccC-CEEEEEeccCcccc
Confidence 023578999999977432222 2344556444 99999999988443
No 196
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.12 E-value=1.9e-09 Score=100.40 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=75.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEE-----------Ee-----------------------
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHT-----------DY----------------------- 282 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~-----------~~----------------------- 282 (358)
..|.+++||.+|+||||++++|+|..........+|+.+..-.+ ..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 56789999999999999999999875221111122222211100 00
Q ss_pred ------------------cCceEEEEeCCCCCCCC-----cchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHH
Q psy15712 283 ------------------KYLRWQVIDTPGILDHS-----LEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQI 339 (358)
Q Consensus 283 ------------------~~~~~~liDTPG~~~~~-----~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~ 339 (358)
....+.++||||+...+ ......++.++..++.+..+.+|+|+|++.... ....+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~--~~d~l 182 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA--NSDAL 182 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC--chhHH
Confidence 01467899999997542 122344666777888877689999999876432 22335
Q ss_pred HHHHHHcccCCCCeEEEeC
Q psy15712 340 GLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 340 ~ll~~i~~~f~~kPvilvf 358 (358)
++.+.+.+. ++|+++|+
T Consensus 183 ~ia~~ld~~--~~rti~Vi 199 (240)
T smart00053 183 KLAKEVDPQ--GERTIGVI 199 (240)
T ss_pred HHHHHHHHc--CCcEEEEE
Confidence 666666554 67888763
No 197
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.12 E-value=6.4e-10 Score=118.00 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=72.1
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe----cCceEEEEeCCCCCCCCcchHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY----KYLRWQVIDTPGILDHSLEDRNIIEMQAV 311 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~----~~~~~~liDTPG~~~~~~~~~~~ie~~~~ 311 (358)
.+.+.|+++|++|+|||||+++|++..+.....++.|.+.....+.+ .+..+.+|||||... +.....
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~--------F~~mr~ 313 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA--------FSSMRS 313 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHH--------HHHHHH
Confidence 46789999999999999999999987766555566666554434333 246899999999731 222233
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
..+.. +|++++|+|+++.......+ .+..+.. .+.|+|++
T Consensus 314 rg~~~-aDiaILVVDA~dGv~~QT~E---~I~~~k~--~~iPiIVV 353 (742)
T CHL00189 314 RGANV-TDIAILIIAADDGVKPQTIE---AINYIQA--ANVPIIVA 353 (742)
T ss_pred HHHHH-CCEEEEEEECcCCCChhhHH---HHHHHHh--cCceEEEE
Confidence 34444 49999999998754332223 3333333 26787775
No 198
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.11 E-value=5.2e-10 Score=99.40 Aligned_cols=107 Identities=13% Similarity=0.045 Sum_probs=69.6
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||+.++....+.....| |..+.....+..++ ..+++|||+|..... .....++++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~-Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~--------~~~~~~~~~ 72 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVSVDGNTVNLGLWDTAGQEDYN--------RLRPLSYRG 72 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCC-cceeeeEEEEEECCEEEEEEEEECCCCcccc--------ccchhhcCC
Confidence 3689999999999999999998776433223 33233333344444 367899999984321 112234555
Q ss_pred cccEEEEEEeCCCCCCCCHHHH-HHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQ-IGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q-~~ll~~i~~~f~~kPvilv 357 (358)
. +++|+|+|+++..++ +.. -.|+..++..-.+.|++||
T Consensus 73 a-~~~ilvyd~~~~~Sf--~~~~~~w~~~i~~~~~~~piilv 111 (176)
T cd04133 73 A-DVFVLAFSLISRASY--ENVLKKWVPELRHYAPNVPIVLV 111 (176)
T ss_pred C-cEEEEEEEcCCHHHH--HHHHHHHHHHHHHhCCCCCEEEE
Confidence 5 999999999986554 332 2466666543346788876
No 199
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.10 E-value=2e-09 Score=102.47 Aligned_cols=115 Identities=23% Similarity=0.216 Sum_probs=69.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccC---------CCcce-eeeEEEEEEecC--ceEEEEeCCCCCCCCcchH--
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQP---------YAFTT-KSLYVGHTDYKY--LRWQVIDTPGILDHSLEDR-- 303 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~---------~~~tT-~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~-- 303 (358)
.++|+++|.+|+|||||+|+|++....... .+.|+ .......+..+| .++.+|||||+.+......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 468999999999999999999988754221 22222 233333444455 3689999999987632211
Q ss_pred ----HHHHHHHHHHH-------h--h----cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 304 ----NIIEMQAVTAL-------A--H----LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 304 ----~~ie~~~~~~l-------~--~----~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+.++.+...++ + . -.|+++|+++++..... ...+++++.+.. +.|+++|
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~--~~D~~~lk~l~~---~v~vi~V 149 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLK--PLDIEFMKRLSK---RVNIIPV 149 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCC--HHHHHHHHHHhc---cCCEEEE
Confidence 11112221211 1 0 12789999998763221 223677777764 4787776
No 200
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.09 E-value=4.2e-10 Score=100.57 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=70.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcc------------------cCCCcceeeeEEEEEE--ecCceEEEEeCCCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDV------------------QPYAFTTKSLYVGHTD--YKYLRWQVIDTPGILD 297 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v------------------~~~~~tT~~~~~~~~~--~~~~~~~liDTPG~~~ 297 (358)
..+|+++|..++|||||+++|++....+ ....+.|.+.....+. ..+..+.++||||..+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 4689999999999999999998433111 1113556666777777 7888999999999832
Q ss_pred CCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 298 HSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 298 ~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.......++... |++++|+|+.+.......+.+.++. .. +.|+|++
T Consensus 83 --------f~~~~~~~~~~~-D~ailvVda~~g~~~~~~~~l~~~~---~~--~~p~ivv 128 (188)
T PF00009_consen 83 --------FIKEMIRGLRQA-DIAILVVDANDGIQPQTEEHLKILR---EL--GIPIIVV 128 (188)
T ss_dssp --------HHHHHHHHHTTS-SEEEEEEETTTBSTHHHHHHHHHHH---HT--T-SEEEE
T ss_pred --------eeecccceeccc-ccceeeeeccccccccccccccccc---cc--ccceEEe
Confidence 222334455544 9999999998754333333333333 32 6776665
No 201
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.09 E-value=8.6e-10 Score=96.14 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=49.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
+|+++|.+|||||||+|+|+|..... ..|.. ..+.+. .+|||||+...... +......++... |
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~~~-----v~~~~~--~~iDtpG~~~~~~~----~~~~~~~~~~~a-d 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKTQA-----VEFNDK--GDIDTPGEYFSHPR----WYHALITTLQDV-D 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC----ccceE-----EEECCC--CcccCCccccCCHH----HHHHHHHHHhcC-C
Confidence 69999999999999999999865211 12222 223322 27999998543211 122223344444 9
Q ss_pred EEEEEEeCCCCCC
Q psy15712 320 AVLYFIDISEQCG 332 (358)
Q Consensus 320 ~iL~VvD~s~~~~ 332 (358)
++++|+|++....
T Consensus 67 ~il~v~d~~~~~s 79 (158)
T PRK15467 67 MLIYVHGANDPES 79 (158)
T ss_pred EEEEEEeCCCccc
Confidence 9999999997543
No 202
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.09 E-value=9.9e-10 Score=114.43 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=64.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec------------------CceEEEEeCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK------------------YLRWQVIDTPGILDH 298 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~------------------~~~~~liDTPG~~~~ 298 (358)
+.|.|+++|.+|+|||||+|+|++..+......++|.+.-...+.+. ...+.+|||||...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~- 81 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA- 81 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh-
Confidence 46899999999999999999999887643333334543222222111 12488999999732
Q ss_pred CcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 299 ~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+.......+.. +|++++|+|+++.......+.+.+ +... ++|++++
T Consensus 82 -------f~~l~~~~~~~-aD~~IlVvD~~~g~~~qt~e~i~~---l~~~--~vpiIVv 127 (590)
T TIGR00491 82 -------FTNLRKRGGAL-ADLAILIVDINEGFKPQTQEALNI---LRMY--KTPFVVA 127 (590)
T ss_pred -------HHHHHHHHHhh-CCEEEEEEECCcCCCHhHHHHHHH---HHHc--CCCEEEE
Confidence 11122233333 499999999987433322222333 3222 6788776
No 203
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.08 E-value=2.5e-10 Score=102.27 Aligned_cols=55 Identities=31% Similarity=0.413 Sum_probs=46.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC---------CcccCCCcceeeeEEEEEEecCceEEEEeCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD---------VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~---------~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~ 295 (358)
..+++++|.||||||||+|+|.+.. +.++..|+||++.....+. ..+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 4589999999999999999999743 3577889999998876653 26799999996
No 204
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.08 E-value=1.4e-09 Score=98.75 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=65.6
Q ss_pred ecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEE
Q psy15712 244 CGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAV 321 (358)
Q Consensus 244 vG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~i 321 (358)
+|.+|||||||+++++...+.....|+...+.....+.+++ ..+.+|||||... ...+...+++.. |++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~--------~~~l~~~~~~~a-d~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK--------FGGLRDGYYIQG-QCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchh--------hhhhhHHHhcCC-CEE
Confidence 69999999999999997654322222222233333333333 4789999999842 222233455555 999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 322 LYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 322 L~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
++|+|+++... ......|+.++.....+.|+++|
T Consensus 72 ilV~D~t~~~S--~~~i~~w~~~i~~~~~~~piilv 105 (200)
T smart00176 72 IIMFDVTARVT--YKNVPNWHRDLVRVCENIPIVLC 105 (200)
T ss_pred EEEEECCChHH--HHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999998543 33334566666654457898886
No 205
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.08 E-value=1.1e-09 Score=114.35 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=71.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC---cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADV---DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~---~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
+|+++|.+|+|||||+|+|++... .....++.|.+.....+.+++..+.+|||||.. .+...+...+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe--------~f~~~~~~g~~~ 73 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE--------KFISNAIAGGGG 73 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH--------HHHHHHHhhhcc
Confidence 689999999999999999998542 223345778888777788888899999999962 122223344445
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCe-EEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKV-GPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kP-vilv 357 (358)
. |++++|+|+++.......+.+.++... +.| ++++
T Consensus 74 a-D~aILVVDa~~G~~~qT~ehl~il~~l-----gi~~iIVV 109 (581)
T TIGR00475 74 I-DAALLVVDADEGVMTQTGEHLAVLDLL-----GIPHTIVV 109 (581)
T ss_pred C-CEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEE
Confidence 4 999999999985433333444444332 455 6654
No 206
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.08 E-value=7.9e-10 Score=93.52 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=49.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
+|+++|.+|||||||+|+|++.... +.. |. ...+.+ .+|||||.... ....... ....++.. |
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t~-----~~~~~~---~~iDt~G~~~~---~~~~~~~-~~~~~~~a-d 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-TQ-----AVEYND---GAIDTPGEYVE---NRRLYSA-LIVTAADA-D 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc-ce-----eEEEcC---eeecCchhhhh---hHHHHHH-HHHHhhcC-C
Confidence 6899999999999999999987642 111 21 122322 68999997311 1111111 12234454 9
Q ss_pred EEEEEEeCCCCCCC
Q psy15712 320 AVLYFIDISEQCGH 333 (358)
Q Consensus 320 ~iL~VvD~s~~~~~ 333 (358)
++++|+|++++..+
T Consensus 65 ~vilv~d~~~~~s~ 78 (142)
T TIGR02528 65 VIALVQSATDPESR 78 (142)
T ss_pred EEEEEecCCCCCcC
Confidence 99999999987655
No 207
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.07 E-value=8.3e-10 Score=91.47 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=61.8
Q ss_pred EecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe--cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccE
Q psy15712 243 ICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY--KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAA 320 (358)
Q Consensus 243 lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~ 320 (358)
++|.+|+|||||+|+|++..........+..+........ .+..+.+|||||...... .....+.. .|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~-~~~ 71 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS--------LRRLYYRG-ADG 71 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh--------HHHHHhcC-CCE
Confidence 5899999999999999987763223233333333333332 245789999999853211 11223333 499
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 321 VLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 321 iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+++|+|++.+....................++|++++
T Consensus 72 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv 108 (157)
T cd00882 72 IILVYDVTDRESFENVKEWLLLILINKEGENIPIILV 108 (157)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEE
Confidence 9999999985433222221111222222346888876
No 208
>KOG2484|consensus
Probab=99.07 E-value=6.4e-11 Score=114.95 Aligned_cols=146 Identities=20% Similarity=0.257 Sum_probs=95.3
Q ss_pred HHHHHHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHhHHHHHHHHh-hhhHHHHHHHH
Q psy15712 150 ADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSL--YRCKQLKKAALGRMATIMKRQA-SNLEYLEQVRQ 226 (358)
Q Consensus 150 ~~ll~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~--~~~~~l~~~~~gr~~~i~~~~~-~~l~~l~~~~~ 226 (358)
.+..+.+.+...-|.-.+.+|+.++...+..++|..+++..... ..+.......- ....+ ...-..+.+..
T Consensus 165 ~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~~~------~~~~~~s~c~gae~l~~ 238 (435)
T KOG2484|consen 165 PEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQNSN------SKNLQSSVCFGAETLMK 238 (435)
T ss_pred hhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccccccccc------ccccccchhhhHHHHHH
Confidence 45566665544448888889999999999999999999874321 11111000000 00000 00001122223
Q ss_pred HhccCCCC--CCCCcEEEEecCCCCCHHHHHHHHhCCC-CcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchH
Q psy15712 227 HLSRLPSI--DPFTRTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDR 303 (358)
Q Consensus 227 ~l~~l~~~--~~~~~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~ 303 (358)
.+....+. -....+++|+|+|||||||+||+|...+ +.+++.|+.|+..+..++. ..+.|+|.||++-.+.++.
T Consensus 239 ~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld---k~i~llDsPgiv~~~~~~~ 315 (435)
T KOG2484|consen 239 VLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD---KKIRLLDSPGIVPPSIDEK 315 (435)
T ss_pred HhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc---CCceeccCCceeecCCCcc
Confidence 33222111 1357799999999999999999999887 4799999999999887664 6889999999997766554
Q ss_pred H
Q psy15712 304 N 304 (358)
Q Consensus 304 ~ 304 (358)
.
T Consensus 316 ~ 316 (435)
T KOG2484|consen 316 D 316 (435)
T ss_pred c
Confidence 3
No 209
>KOG0094|consensus
Probab=99.07 E-value=1.7e-09 Score=95.92 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=76.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+++++|..+|||||||++++-..+...-.++...+.....+.+.+. ++|+|||+|+- .+..+..++++
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE--------RFrslipsY~R 93 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYIR 93 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHH--------HHhhhhhhhcc
Confidence 468999999999999999999977765555555566666667777665 77999999993 33444556777
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL 348 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~ 348 (358)
.. .+++.|+|+++ ..+.+..-.|++.++..
T Consensus 94 ds-~vaviVyDit~--~~Sfe~t~kWi~dv~~e 123 (221)
T KOG0094|consen 94 DS-SVAVIVYDITD--RNSFENTSKWIEDVRRE 123 (221)
T ss_pred CC-eEEEEEEeccc--cchHHHHHHHHHHHHhc
Confidence 76 99999999998 44556666788887653
No 210
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.06 E-value=5.1e-10 Score=99.17 Aligned_cols=107 Identities=16% Similarity=0.227 Sum_probs=76.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.+|+||||++++|....... ...|.+.....+.+.+..+.+||.+|..... . .+..++..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~----~----~w~~y~~~ 81 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKYKGYSLTIWDLGGQESFR----P----LWKSYFQN 81 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEETTEEEEEEEESSSGGGG----G----GGGGGHTT
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc---cCcccccccceeeeCcEEEEEEecccccccc----c----cceeeccc
Confidence 56799999999999999999999765321 2236677788888899999999999974321 1 12234455
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
. |+++||+|+++... ..+..+.|.++.. ...++|++++
T Consensus 82 ~-~~iIfVvDssd~~~--l~e~~~~L~~ll~~~~~~~~piLIl 121 (175)
T PF00025_consen 82 A-DGIIFVVDSSDPER--LQEAKEELKELLNDPELKDIPILIL 121 (175)
T ss_dssp E-SEEEEEEETTGGGG--HHHHHHHHHHHHTSGGGTTSEEEEE
T ss_pred c-ceeEEEEeccccee--ecccccchhhhcchhhcccceEEEE
Confidence 5 99999999998543 3444455555433 3467898876
No 211
>KOG0073|consensus
Probab=99.06 E-value=2.9e-09 Score=91.97 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=78.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
..+|.++|..|+||||++++|.+.... ++| |...+...+.+++.++++||.-|... +...+..+++.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGGq~~--------lr~~W~nYfes 83 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGGQKT--------LRSYWKNYFES 83 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCCcch--------hHHHHHHhhhc
Confidence 568999999999999999999998854 444 78888888889999999999999842 33445667776
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHc--ccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIR--PLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~--~~f~~kPvilv 357 (358)
. |+++||+|.++..+. ++-...+.++- ...+++|++++
T Consensus 84 t-dglIwvvDssD~~r~--~e~~~~L~~lL~eerlaG~~~Lvl 123 (185)
T KOG0073|consen 84 T-DGLIWVVDSSDRMRM--QECKQELTELLVEERLAGAPLLVL 123 (185)
T ss_pred c-CeEEEEEECchHHHH--HHHHHHHHHHHhhhhhcCCceEEE
Confidence 6 999999999885432 33233333322 34567777765
No 212
>PLN00023 GTP-binding protein; Provisional
Probab=99.05 E-value=1.8e-09 Score=104.18 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=65.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC---------------ceEEEEeCCCCCCCCcc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY---------------LRWQVIDTPGILDHSLE 301 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~---------------~~~~liDTPG~~~~~~~ 301 (358)
...+|+++|..|||||||++++++..+.....++...+.....+.+++ ..++||||+|...
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr---- 95 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER---- 95 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh----
Confidence 346899999999999999999998765433333333333344444431 3589999999842
Q ss_pred hHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Q psy15712 302 DRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRP 347 (358)
Q Consensus 302 ~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~ 347 (358)
...+...+++.. +++|+|+|+++.. +.+....|+..+..
T Consensus 96 ----frsL~~~yyr~A-dgiILVyDITdr~--SFenL~kWl~eI~~ 134 (334)
T PLN00023 96 ----YKDCRSLFYSQI-NGVIFVHDLSQRR--TKTSLQKWASEVAA 134 (334)
T ss_pred ----hhhhhHHhccCC-CEEEEEEeCCCHH--HHHHHHHHHHHHHH
Confidence 222233445555 9999999999854 33334456666653
No 213
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.05 E-value=1.1e-09 Score=110.33 Aligned_cols=84 Identities=14% Similarity=0.209 Sum_probs=62.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcc-------------------------------cCCCcceeeeEEEEEEecCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDV-------------------------------QPYAFTTKSLYVGHTDYKYL 285 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v-------------------------------~~~~~tT~~~~~~~~~~~~~ 285 (358)
...+|+++|.+|+|||||+|+|+.....+ ...+++|.+.....+.+++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 45689999999999999999998432111 11478999999999988899
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 286 RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 286 ~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
.+.+|||||..+.. ......+.. +|++++|+|+++
T Consensus 85 ~i~liDtpG~~~~~--------~~~~~~~~~-aD~~ilVvDa~~ 119 (425)
T PRK12317 85 YFTIVDCPGHRDFV--------KNMITGASQ-ADAAVLVVAADD 119 (425)
T ss_pred EEEEEECCCcccch--------hhHhhchhc-CCEEEEEEEccc
Confidence 99999999963211 112223334 499999999987
No 214
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.05 E-value=3.9e-10 Score=97.85 Aligned_cols=56 Identities=34% Similarity=0.393 Sum_probs=48.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC-CcccCCCcceeeeEEEEEEecCceEEEEeCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~ 295 (358)
...+++++|.||||||||+|+|++.. ..+++.++||+......+ +..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 46789999999999999999999877 468889999999887654 257899999996
No 215
>CHL00071 tufA elongation factor Tu
Probab=99.04 E-value=1.8e-09 Score=108.28 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=63.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc----------------ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD----------------VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~----------------v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~ 300 (358)
...+|+++|.+|+|||||+|+|++.... .....++|.+.....+.+++.++.++||||..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~---- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence 4578999999999999999999864211 11236778877766676777889999999963
Q ss_pred chHHHHHHHHHHHHhhcccEEEEEEeCCCCCC
Q psy15712 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCG 332 (358)
Q Consensus 301 ~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~ 332 (358)
.+-.....++... |++++|+|++....
T Consensus 87 ----~~~~~~~~~~~~~-D~~ilVvda~~g~~ 113 (409)
T CHL00071 87 ----DYVKNMITGAAQM-DGAILVVSAADGPM 113 (409)
T ss_pred ----HHHHHHHHHHHhC-CEEEEEEECCCCCc
Confidence 1222334555555 99999999987543
No 216
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.04 E-value=1.2e-09 Score=98.62 Aligned_cols=107 Identities=19% Similarity=0.190 Sum_probs=60.7
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcc-c----CCCcceeeeEEEEEEe-cCceEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDV-Q----PYAFTTKSLYVGHTDY-KYLRWQVIDTPGILDHSLEDRNIIEMQAVT 312 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v-~----~~~~tT~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~ie~~~~~ 312 (358)
..|+++|.+|||||||+|+|++..... . ....+|.... .+.. ....+.+|||||+.+........++. .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~---~ 76 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFPPDDYLEE---M 76 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCCHHHHHHH---h
Confidence 479999999999999999999854211 1 1111232221 1111 13478999999998654332222221 1
Q ss_pred HHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 313 ALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
.+... |++++|.| .... .....+++.++.. ++|+++|+
T Consensus 77 ~~~~~-d~~l~v~~--~~~~---~~d~~~~~~l~~~--~~~~ilV~ 114 (197)
T cd04104 77 KFSEY-DFFIIISS--TRFS---SNDVKLAKAIQCM--GKKFYFVR 114 (197)
T ss_pred CccCc-CEEEEEeC--CCCC---HHHHHHHHHHHHh--CCCEEEEE
Confidence 12233 78777743 2222 2334555555554 67888774
No 217
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.04 E-value=3.8e-09 Score=96.28 Aligned_cols=108 Identities=15% Similarity=0.097 Sum_probs=65.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEE--EEe--cCceEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGH--TDY--KYLRWQVIDTPGILDHSLEDRNIIEMQAVT 312 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~--~~~--~~~~~~liDTPG~~~~~~~~~~~ie~~~~~ 312 (358)
...+|+++|.+|||||||++++..........+ |.+..... +.. +...+.+|||||.... ......
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~--------~~~~~~ 77 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIP--TLGVEVHPLKFYTNCGPICFNVWDTAGQEKF--------GGLRDG 77 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ccceEEEEEEEEECCeEEEEEEEECCCchhh--------hhhhHH
Confidence 456899999999999999987665443222222 33332222 222 2347889999997321 111223
Q ss_pred HHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 313 ALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+... +++++|+|+++...+ .....++..+.....+.|++++
T Consensus 78 ~~~~~-~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~i~lv 119 (215)
T PTZ00132 78 YYIKG-QCAIIMFDVTSRITY--KNVPNWHRDIVRVCENIPIVLV 119 (215)
T ss_pred HhccC-CEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEE
Confidence 33444 899999999985533 3334556655544457787765
No 218
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.02 E-value=2.3e-09 Score=99.05 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=68.3
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCC--CCccc-CCCcceeeeEEEEEEec---CceEEEEeCCCCCCCCcch-HHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRA--DVDVQ-PYAFTTKSLYVGHTDYK---YLRWQVIDTPGILDHSLED-RNIIEM 308 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~--~~~v~-~~~~tT~~~~~~~~~~~---~~~~~liDTPG~~~~~~~~-~~~ie~ 308 (358)
.+...|+++|.+++|||||+|.|++. .+.++ ..+.||+++..+...+. +..+.++||||+.+..... ......
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34568999999999999999999998 55544 45788998888776653 5789999999999876544 333333
Q ss_pred HHHHHHhhcccEEEEEEeCCC
Q psy15712 309 QAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 309 ~~~~~l~~~~d~iL~VvD~s~ 329 (358)
.+..++ +.++++|.++...
T Consensus 85 ~~l~~l--lss~~i~n~~~~~ 103 (224)
T cd01851 85 FALATL--LSSVLIYNSWETI 103 (224)
T ss_pred HHHHHH--HhCEEEEeccCcc
Confidence 333333 3588999988654
No 219
>PRK09866 hypothetical protein; Provisional
Probab=99.02 E-value=4.6e-09 Score=108.42 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=29.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCccee
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTK 273 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~ 273 (358)
.++++++|++|+|||||+|+|+|..+. +++.++||.
T Consensus 69 ~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 69 EMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 379999999999999999999998765 335555555
No 220
>KOG2423|consensus
Probab=99.02 E-value=8.8e-11 Score=113.68 Aligned_cols=159 Identities=23% Similarity=0.297 Sum_probs=101.9
Q ss_pred hHHHHHHHHHhHhhhCC----CCCCCchh---HHHHHHHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCC-h-H
Q psy15712 124 TQSNFHERLSQIIQEFP----KLDNIHPF---YADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADS-L-Y 194 (358)
Q Consensus 124 ~~~~~~~~l~~i~~~fp----~~d~~~pf---y~~ll~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~-~-~ 194 (358)
..+++...|-+++++-- ++|--+|. -.-+.+.+-.....|.....+|++++....+.+.|++.+..... + +
T Consensus 199 QSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAf 278 (572)
T KOG2423|consen 199 QSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAF 278 (572)
T ss_pred chhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceee
Confidence 34456666766655432 24443333 13444555666677788889999999999999999998765321 1 1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCccee
Q psy15712 195 RCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTK 273 (358)
Q Consensus 195 ~~~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~ 273 (358)
.+.--..-+.|-+ +.-+|+ +.++.. +.....|+++|||||||||+||+|-..++ .+++.|+-|+
T Consensus 279 HAsi~nsfGKgal-------------I~llRQ-f~kLh~-dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETK 343 (572)
T KOG2423|consen 279 HASINNSFGKGAL-------------IQLLRQ-FAKLHS-DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETK 343 (572)
T ss_pred ehhhcCccchhHH-------------HHHHHH-HHhhcc-CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcch
Confidence 1110001112222 222222 222221 22456899999999999999999998885 6999999998
Q ss_pred eeEEEEEEecCceEEEEeCCCCCCCCc
Q psy15712 274 SLYVGHTDYKYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 274 ~~~~~~~~~~~~~~~liDTPG~~~~~~ 300 (358)
-.+...+. .++.|||+||+.-...
T Consensus 344 VWQYItLm---krIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 344 VWQYITLM---KRIFLIDCPGVVYPSS 367 (572)
T ss_pred HHHHHHHH---hceeEecCCCccCCCC
Confidence 76654443 5899999999986554
No 221
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.01 E-value=3.6e-09 Score=97.11 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=59.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC-------------------------------cccCCCcceeeeEEEEEEecCceEE
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADV-------------------------------DVQPYAFTTKSLYVGHTDYKYLRWQ 288 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~-------------------------------~v~~~~~tT~~~~~~~~~~~~~~~~ 288 (358)
+|+++|.+++|||||+.+|+.... ......++|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999952100 0112347888988889999999999
Q ss_pred EEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCC
Q psy15712 289 VIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 289 liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~ 330 (358)
+|||||..+. ......++.. +|++++|+|+++.
T Consensus 81 liDtpG~~~~--------~~~~~~~~~~-~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRDF--------VPNMITGASQ-ADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHHH--------HHHHHHHhhh-CCEEEEEEECCCC
Confidence 9999997321 1122334444 4999999999984
No 222
>KOG0078|consensus
Probab=99.01 E-value=5.4e-09 Score=93.92 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=78.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
....|+++|.+|||||+++-++....+..+.......+.....+..++. .+|+|||.|... ...++..++
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQer--------f~ti~~sYy 82 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQER--------FRTITTAYY 82 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchh--------HHHHHHHHH
Confidence 4578999999999999999999987776555444455666666777765 569999999942 333444555
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
+.. +++++|+|+++.- +.+....|+..|.+.- .+.|.+||
T Consensus 83 rgA-~gi~LvyDitne~--Sfeni~~W~~~I~e~a~~~v~~~Lv 123 (207)
T KOG0078|consen 83 RGA-MGILLVYDITNEK--SFENIRNWIKNIDEHASDDVVKILV 123 (207)
T ss_pred hhc-CeeEEEEEccchH--HHHHHHHHHHHHHhhCCCCCcEEEe
Confidence 555 9999999999854 3444555777776533 26777775
No 223
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.00 E-value=4.6e-09 Score=91.46 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=65.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|||||||++++....+.. .++. |.+.....+.+++. .+++|||+|.... .+...
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~-~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-------------~~~~~- 65 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQ-LESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPDA-------------QFASW- 65 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC-CCCC-CccceEEEEEECCEEEEEEEEECCCCCch-------------hHHhc-
Confidence 68999999999999999988665432 2222 22333345566663 5789999999420 12233
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
+|++++|+|+++...+ +....++..+... ..+.|+++|
T Consensus 66 ~~~~ilv~d~~~~~sf--~~~~~~~~~i~~~~~~~~~piilv 105 (158)
T cd04103 66 VDAVIFVFSLENEASF--QTVYNLYHQLSSYRNISEIPLILV 105 (158)
T ss_pred CCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4999999999995544 3333455555432 246788876
No 224
>KOG0087|consensus
Probab=99.00 E-value=1.9e-09 Score=96.64 Aligned_cols=110 Identities=20% Similarity=0.201 Sum_probs=79.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
..+.|+++|.++||||-|+.+++.-.+.....++....+....+..++. ..|+|||+|+... ...+ +++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERy--------rAit-SaY 83 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERY--------RAIT-SAY 83 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhh--------cccc-chh
Confidence 4568999999999999999999988877666665555555555666665 5699999999432 1111 233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
-..+-++|+|+|++.... .+...+||.+++... .+.+++||
T Consensus 84 YrgAvGAllVYDITr~~T--fenv~rWL~ELRdhad~nivimLv 125 (222)
T KOG0087|consen 84 YRGAVGALLVYDITRRQT--FENVERWLKELRDHADSNIVIMLV 125 (222)
T ss_pred hcccceeEEEEechhHHH--HHHHHHHHHHHHhcCCCCeEEEEe
Confidence 333488999999998544 456778999998755 56777765
No 225
>KOG0092|consensus
Probab=99.00 E-value=1.5e-09 Score=96.07 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=71.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|..|||||||+-++...++.-...|++........+..++ .++.+|||+|.-. ...++..++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQER--------y~slapMYy 75 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQER--------YHSLAPMYY 75 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccc--------cccccccee
Confidence 356899999999999999999987776433344444444555555555 5778999999953 222344566
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF 349 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f 349 (358)
+.. +++|+|+|+++.. +...--.|+.+++...
T Consensus 76 RgA-~AAivvYDit~~~--SF~~aK~WvkeL~~~~ 107 (200)
T KOG0092|consen 76 RGA-NAAIVVYDITDEE--SFEKAKNWVKELQRQA 107 (200)
T ss_pred cCC-cEEEEEEecccHH--HHHHHHHHHHHHHhhC
Confidence 666 9999999999844 4455566888887653
No 226
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.00 E-value=3.1e-09 Score=101.85 Aligned_cols=208 Identities=16% Similarity=0.192 Sum_probs=123.1
Q ss_pred hhhhhhHHHHHHHHHhHhhhCCCCCCCchhHHHHHHHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCChHHHHH
Q psy15712 119 RKIKYTQSNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLYRCKQ 198 (358)
Q Consensus 119 ~~l~~~~~~~~~~l~~i~~~fp~~d~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~~~~~~ 198 (358)
+.+..+.+.+...+..+......-....+|+.+|.++|+..| ..++.+..+++.+++. ....+...+ ...
T Consensus 39 ~gl~k~~~~~~~~~~~~~~~~~~~~~de~~~eeLE~~Li~aD------vg~e~~~~i~~~l~~~-~~~~~~~~~---~~~ 108 (340)
T COG0552 39 QGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEAD------VGVETAEEIIEELRKR-EGKKKKIKD---EET 108 (340)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHcc------ccHHHHHHHHHHHHHH-hcccccCCC---HHH
Confidence 346666777777665443322232234468999999999988 5688888888888875 222222222 222
Q ss_pred HHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHh------CCCCcccCCCcc-
Q psy15712 199 LKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKIT------RADVDVQPYAFT- 271 (358)
Q Consensus 199 l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~------~~~~~v~~~~~t- 271 (358)
++......+..++..... ...... .+ ...++..|++||.+|+||||.+.+|+ |.++-.+...+.
T Consensus 109 v~~~l~~~l~~il~~~~~-~~~~~~-------~~-~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR 179 (340)
T COG0552 109 VKEALREALIEILRPVDK-VDLPLE-------IP-KEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR 179 (340)
T ss_pred HHHHHHHHHHHHhccccc-ccchhh-------hc-cCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH
Confidence 233223333333332100 000001 11 13346789999999999999999997 222222111100
Q ss_pred --------------eeeeEEEE-------E--------EecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc---cc
Q psy15712 272 --------------TKSLYVGH-------T--------DYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL---RA 319 (358)
Q Consensus 272 --------------T~~~~~~~-------~--------~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~---~d 319 (358)
...+..+. + .-.+..+.++||+|-+.+..+.++++++.....-... ++
T Consensus 180 AaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~ 259 (340)
T COG0552 180 AAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPH 259 (340)
T ss_pred HHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCc
Confidence 00011111 0 0136789999999999999899998887654432222 34
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHcc
Q psy15712 320 AVLYFIDISEQCGHSIQEQIGLFKSIRP 347 (358)
Q Consensus 320 ~iL~VvD~s~~~~~~~~~q~~ll~~i~~ 347 (358)
=+++|+|++. |.+.-+|.+.|++..+
T Consensus 260 e~llvlDAtt--Gqnal~QAk~F~eav~ 285 (340)
T COG0552 260 EILLVLDATT--GQNALSQAKIFNEAVG 285 (340)
T ss_pred eEEEEEEccc--ChhHHHHHHHHHHhcC
Confidence 4899999987 8888899999998654
No 227
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.00 E-value=3e-09 Score=113.33 Aligned_cols=107 Identities=18% Similarity=0.137 Sum_probs=74.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC------cccC------------CCcceeeeEEEEEEecCceEEEEeCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV------DVQP------------YAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~------~v~~------------~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~ 298 (358)
+-++|+++|.+|+|||||+|+|..... .+.+ ..++|.+.....+.|++.++.+|||||..+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 345899999999999999999963211 1111 3577888888899999999999999999653
Q ss_pred CcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 299 ~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.. .+..+++.. |++++|+|+++....... .++..+... ++|++++
T Consensus 89 ~~--------~~~~~l~~~-D~~ilVvda~~g~~~~~~---~~~~~~~~~--~~p~ivv 133 (689)
T TIGR00484 89 TV--------EVERSLRVL-DGAVAVLDAVGGVQPQSE---TVWRQANRY--EVPRIAF 133 (689)
T ss_pred hH--------HHHHHHHHh-CEEEEEEeCCCCCChhHH---HHHHHHHHc--CCCEEEE
Confidence 21 234556666 999999999885433222 333333322 5787765
No 228
>KOG0079|consensus
Probab=99.00 E-value=2.3e-09 Score=91.07 Aligned_cols=107 Identities=20% Similarity=0.180 Sum_probs=75.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
..+++|.||||||||+-++....+.-+...++..+.....++.+|. .++||||+|.- .+...+-.+++ .
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqE--------rFrtitstyyr-g 80 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQE--------RFRTITSTYYR-G 80 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHH--------HHHHHHHHHcc-C
Confidence 4678999999999999998876554443334445677778888776 56999999982 22222323333 4
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
++++++|+|+++ +.+....-+|++++++.....|-++|
T Consensus 81 thgv~vVYDVTn--~ESF~Nv~rWLeei~~ncdsv~~vLV 118 (198)
T KOG0079|consen 81 THGVIVVYDVTN--GESFNNVKRWLEEIRNNCDSVPKVLV 118 (198)
T ss_pred CceEEEEEECcc--hhhhHhHHHHHHHHHhcCccccceec
Confidence 599999999998 44555567899998876555565554
No 229
>PRK12735 elongation factor Tu; Reviewed
Probab=98.99 E-value=3.7e-09 Score=105.57 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=69.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC-------CC---------cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA-------DV---------DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~-------~~---------~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~ 300 (358)
+..+|+++|.+|+|||||+++|++. +. ......++|.+.....+..++..+.++||||..
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 4568999999999999999999862 11 011245777777666666677789999999973
Q ss_pred chHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEE
Q psy15712 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPL 356 (358)
Q Consensus 301 ~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvil 356 (358)
.+-..+...+... |++++|+|++........+.+.++.. . ++|.++
T Consensus 87 ----~f~~~~~~~~~~a-D~~llVvda~~g~~~qt~e~l~~~~~---~--gi~~ii 132 (396)
T PRK12735 87 ----DYVKNMITGAAQM-DGAILVVSAADGPMPQTREHILLARQ---V--GVPYIV 132 (396)
T ss_pred ----HHHHHHHhhhccC-CEEEEEEECCCCCchhHHHHHHHHHH---c--CCCeEE
Confidence 1222233444444 99999999987543333333333332 2 567553
No 230
>KOG0095|consensus
Probab=98.98 E-value=7e-09 Score=88.27 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=73.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
.++|++||..|||||+|+.+++..-+..+...+...+.....+..+|. ++|+|||+|.. .+...+.++++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqe--------rfrsitqsyyr 78 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQE--------RFRSITQSYYR 78 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchH--------HHHHHHHHHhh
Confidence 368999999999999999999987765444444445556667777765 67999999983 34455667777
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRP 347 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~ 347 (358)
.. +++++|+|+|-+..+. -.-+|+.+|.+
T Consensus 79 sa-halilvydiscqpsfd--clpewlreie~ 107 (213)
T KOG0095|consen 79 SA-HALILVYDISCQPSFD--CLPEWLREIEQ 107 (213)
T ss_pred hc-ceEEEEEecccCcchh--hhHHHHHHHHH
Confidence 66 9999999998765543 34567887755
No 231
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.98 E-value=5.4e-09 Score=109.11 Aligned_cols=109 Identities=18% Similarity=0.179 Sum_probs=63.0
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe------------------cCceEEEEeCCCCC
Q psy15712 235 DPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY------------------KYLRWQVIDTPGIL 296 (358)
Q Consensus 235 ~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~------------------~~~~~~liDTPG~~ 296 (358)
..+.|.|+++|.+|+|||||+|+|++..+........|.+.......+ ....+.+|||||..
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 346789999999999999999999876543222222232221111110 00137899999984
Q ss_pred CCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 297 DHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 297 ~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+. .......... +|++++|+|+++.......+.+.++ .. .+.|++++
T Consensus 83 ~f--------~~~~~~~~~~-aD~~IlVvDa~~g~~~qt~e~i~~~---~~--~~vpiIvv 129 (586)
T PRK04004 83 AF--------TNLRKRGGAL-ADIAILVVDINEGFQPQTIEAINIL---KR--RKTPFVVA 129 (586)
T ss_pred HH--------HHHHHHhHhh-CCEEEEEEECCCCCCHhHHHHHHHH---HH--cCCCEEEE
Confidence 32 1112223333 4999999999874333222333333 22 26787765
No 232
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.97 E-value=4.7e-09 Score=95.78 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=61.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCccc----------CC---------CcceeeeEEEEEEec-----CceEEEEeCCCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQ----------PY---------AFTTKSLYVGHTDYK-----YLRWQVIDTPGI 295 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~----------~~---------~~tT~~~~~~~~~~~-----~~~~~liDTPG~ 295 (358)
+|+++|.+|+|||||+++|+....... .+ .+.|.......+.+. ...+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986432211 00 122222222222222 257899999998
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 296 LDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 296 ~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+. ...+..++... |++++|+|+++...... ..++...... ++|++++
T Consensus 82 ~~f--------~~~~~~~~~~a-D~~llVvD~~~~~~~~~---~~~~~~~~~~--~~p~iiv 129 (213)
T cd04167 82 VNF--------MDEVAAALRLS-DGVVLVVDVVEGVTSNT---ERLIRHAILE--GLPIVLV 129 (213)
T ss_pred cch--------HHHHHHHHHhC-CEEEEEEECCCCCCHHH---HHHHHHHHHc--CCCEEEE
Confidence 643 11233455555 99999999987543322 2233333222 5787775
No 233
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.96 E-value=1.5e-09 Score=92.80 Aligned_cols=55 Identities=31% Similarity=0.404 Sum_probs=45.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILD 297 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~ 297 (358)
+++++|.||||||||+|+|++... .++..+++|+......+ + ..+.+|||||+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~DtpG~~~ 140 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--T-PTITLCDCPGLVF 140 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--C-CCEEEEECCCcCC
Confidence 799999999999999999998874 67788888887665433 3 3689999999964
No 234
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.96 E-value=5.4e-09 Score=93.20 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=66.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|.+|+|||||++++....... .+..++.......+.+++. .+.+|||||....... ....+.+.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~--------~~~~~~~a 73 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL--------RPLSYSKA 73 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCChhcccc--------chhhcCCC
Confidence 79999999999999999998655432 2222333333334444543 4689999997532110 11133444
Q ss_pred ccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
+++++|+|+++... ..... .|+..+.....+.|+++|
T Consensus 74 -~~~llv~~i~~~~s--~~~~~~~~~~~i~~~~~~~piilv 111 (187)
T cd04129 74 -HVILIGFAVDTPDS--LENVRTKWIEEVRRYCPNVPVILV 111 (187)
T ss_pred -CEEEEEEECCCHHH--HHHHHHHHHHHHHHhCCCCCEEEE
Confidence 89999999987542 33222 366666555567899887
No 235
>PRK12739 elongation factor G; Reviewed
Probab=98.96 E-value=5.8e-09 Score=111.18 Aligned_cols=107 Identities=19% Similarity=0.178 Sum_probs=75.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC-----C-ccc------------CCCcceeeeEEEEEEecCceEEEEeCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD-----V-DVQ------------PYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~-----~-~v~------------~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~ 298 (358)
+.++|+++|.+|+|||||+|+|+... . .+. ...++|.+.....+.|++..+.++||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 34689999999999999999996321 1 111 2457888888888999999999999999853
Q ss_pred CcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 299 ~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
....+..++... |++++|+|++.......+ .++..+... ++|+|++
T Consensus 86 -------f~~e~~~al~~~-D~~ilVvDa~~g~~~qt~---~i~~~~~~~--~~p~iv~ 131 (691)
T PRK12739 86 -------FTIEVERSLRVL-DGAVAVFDAVSGVEPQSE---TVWRQADKY--GVPRIVF 131 (691)
T ss_pred -------HHHHHHHHHHHh-CeEEEEEeCCCCCCHHHH---HHHHHHHHc--CCCEEEE
Confidence 112355667666 999999999885432222 334433332 5777654
No 236
>PRK00007 elongation factor G; Reviewed
Probab=98.95 E-value=7.6e-09 Score=110.30 Aligned_cols=106 Identities=18% Similarity=0.115 Sum_probs=73.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHh---CCCCc---cc------------CCCcceeeeEEEEEEecCceEEEEeCCCCCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT---RADVD---VQ------------PYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~---~~~~~---v~------------~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~ 299 (358)
-++|+++|.+|+|||||+|+|. |.... +. ...++|.+.....+.|.+..+.++||||..+.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f- 88 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF- 88 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH-
Confidence 4589999999999999999996 32111 21 24578888888889999999999999998532
Q ss_pred cchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 300 ~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
......++... |++++|+|++..........+..+. .. ++|+|++
T Consensus 89 -------~~ev~~al~~~-D~~vlVvda~~g~~~qt~~~~~~~~---~~--~~p~iv~ 133 (693)
T PRK00007 89 -------TIEVERSLRVL-DGAVAVFDAVGGVEPQSETVWRQAD---KY--KVPRIAF 133 (693)
T ss_pred -------HHHHHHHHHHc-CEEEEEEECCCCcchhhHHHHHHHH---Hc--CCCEEEE
Confidence 11244566666 9999999998754333333333333 32 5676654
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=98.95 E-value=5.8e-09 Score=104.20 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=70.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-------c---------ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-------D---------VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-------~---------v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~ 300 (358)
...+|+++|.+++|||||+++|++... . .....++|.+.....+..++.++.++||||..
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 456899999999999999999986211 0 11145778887766666677789999999973
Q ss_pred chHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEE
Q psy15712 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPL 356 (358)
Q Consensus 301 ~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvil 356 (358)
.+-......+.. +|++++|+|++........+.+.++... ++|.++
T Consensus 87 ----~f~~~~~~~~~~-aD~~llVVDa~~g~~~qt~~~~~~~~~~-----g~p~ii 132 (396)
T PRK00049 87 ----DYVKNMITGAAQ-MDGAILVVSAADGPMPQTREHILLARQV-----GVPYIV 132 (396)
T ss_pred ----HHHHHHHhhhcc-CCEEEEEEECCCCCchHHHHHHHHHHHc-----CCCEEE
Confidence 122223344444 4999999999875433333333333332 578654
No 238
>PLN03127 Elongation factor Tu; Provisional
Probab=98.95 E-value=7.1e-09 Score=105.00 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=70.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC------CC----------cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA------DV----------DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~------~~----------~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~ 300 (358)
...+|+++|..++|||||+++|++. .. ......++|.+.....+..++.++.++||||..+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 4568999999999999999999732 10 1122368888888777777778999999999842
Q ss_pred chHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeE
Q psy15712 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVG 354 (358)
Q Consensus 301 ~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPv 354 (358)
+-......+.. +|++++|+|++........+.+.++... ++|.
T Consensus 137 -----f~~~~~~g~~~-aD~allVVda~~g~~~qt~e~l~~~~~~-----gip~ 179 (447)
T PLN03127 137 -----YVKNMITGAAQ-MDGGILVVSAPDGPMPQTKEHILLARQV-----GVPS 179 (447)
T ss_pred -----hHHHHHHHHhh-CCEEEEEEECCCCCchhHHHHHHHHHHc-----CCCe
Confidence 11223334444 4999999999875433333334444333 5674
No 239
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.94 E-value=2.1e-09 Score=94.83 Aligned_cols=58 Identities=33% Similarity=0.464 Sum_probs=48.4
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCC
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGIL 296 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~ 296 (358)
+..++++++|.||||||||+|+|++... .+++.++||.......+. ..+.++||||++
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~~ 171 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGIL 171 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCCC
Confidence 3457899999999999999999998775 678889999887765442 578999999984
No 240
>KOG2485|consensus
Probab=98.93 E-value=5.2e-09 Score=99.12 Aligned_cols=76 Identities=28% Similarity=0.230 Sum_probs=60.5
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHhC------CCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHH
Q psy15712 235 DPFTRTIIICGFPNVGKSSFLNKITR------ADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEM 308 (358)
Q Consensus 235 ~~~~~~I~lvG~~nvGKSSLin~L~~------~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~ 308 (358)
.+....+.++|.||||||||+|++-. +...+++.|+.|+.+.....-.+...++++||||++.+...+.+...+
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lK 219 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLK 219 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhh
Confidence 44678999999999999999999863 224689999999998875554556689999999999887777666555
Q ss_pred HH
Q psy15712 309 QA 310 (358)
Q Consensus 309 ~~ 310 (358)
++
T Consensus 220 LA 221 (335)
T KOG2485|consen 220 LA 221 (335)
T ss_pred hh
Confidence 44
No 241
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.92 E-value=1.5e-08 Score=91.96 Aligned_cols=109 Identities=15% Similarity=0.067 Sum_probs=67.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec--CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK--YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.+|+++|.+|||||||+++|.+..+.....++.+........... ...+++|||+|+. .+...+..+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~--------~~~~~~~~y~~~ 77 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE--------EYRSLRPEYYRG 77 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHH--------HHHHHHHHHhcC
Confidence 689999999999999999999887654333332222222111111 2468999999994 233333333344
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
++++++|+|.+...+. .+....++..+.... .+.|+++|
T Consensus 78 -~~~~l~~~d~~~~~~~-~~~~~~~~~~l~~~~~~~~~iilv 117 (219)
T COG1100 78 -ANGILIVYDSTLRESS-DELTEEWLEELRELAPDDVPILLV 117 (219)
T ss_pred -CCEEEEEEecccchhh-hHHHHHHHHHHHHhCCCCceEEEE
Confidence 4899999998873222 222334555554443 25788876
No 242
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.92 E-value=1e-08 Score=94.54 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=62.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCccc-C---------------CCcceeeeEEEEEEec----------CceEEEEeCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQ-P---------------YAFTTKSLYVGHTDYK----------YLRWQVIDTP 293 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~-~---------------~~~tT~~~~~~~~~~~----------~~~~~liDTP 293 (358)
+|+++|..++|||||+.+|......+. . .-+.|.......+.+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999974321110 0 0122333222233333 4578899999
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 294 GILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 294 G~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
|..+. ...+..+++.. |++++|+|++.......+. ++...... ++|++++
T Consensus 82 G~~~f--------~~~~~~~l~~a-D~~ilVvD~~~g~~~~t~~---~l~~~~~~--~~p~ilv 131 (222)
T cd01885 82 GHVDF--------SSEVTAALRLC-DGALVVVDAVEGVCVQTET---VLRQALKE--RVKPVLV 131 (222)
T ss_pred Ccccc--------HHHHHHHHHhc-CeeEEEEECCCCCCHHHHH---HHHHHHHc--CCCEEEE
Confidence 99652 22344566666 9999999999865433322 33332222 4676665
No 243
>PRK12736 elongation factor Tu; Reviewed
Probab=98.91 E-value=1.3e-08 Score=101.59 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=65.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC----------------cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV----------------DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~----------------~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~ 300 (358)
...+|+++|.+++|||||+++|++... ......++|.+.....+..++..+.+|||||..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH----
Confidence 457899999999999999999986311 011145778777666666667789999999963
Q ss_pred chHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHH
Q psy15712 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFK 343 (358)
Q Consensus 301 ~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~ 343 (358)
.+-......+... |++++|+|+++.......+.+.++.
T Consensus 87 ----~f~~~~~~~~~~~-d~~llVvd~~~g~~~~t~~~~~~~~ 124 (394)
T PRK12736 87 ----DYVKNMITGAAQM-DGAILVVAATDGPMPQTREHILLAR 124 (394)
T ss_pred ----HHHHHHHHHHhhC-CEEEEEEECCCCCchhHHHHHHHHH
Confidence 1222233444444 9999999998754333334444443
No 244
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.90 E-value=2e-08 Score=103.72 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=67.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC--CCC----cc----------cCC------CcceeeeEEEEEEecCceEEEEeCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR--ADV----DV----------QPY------AFTTKSLYVGHTDYKYLRWQVIDTPG 294 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~--~~~----~v----------~~~------~~tT~~~~~~~~~~~~~~~~liDTPG 294 (358)
+..+|+++|.+|+|||||+++|+. ... .+ +++ -+.|.......+.+++..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 346899999999999999999962 111 11 111 12333444556778888999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 295 ILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 295 ~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
..+.. ..+..++... |++++|+|+++...... ..++..... .++|++++
T Consensus 89 ~~df~--------~~~~~~l~~a-D~aIlVvDa~~gv~~~t---~~l~~~~~~--~~iPiiv~ 137 (526)
T PRK00741 89 HEDFS--------EDTYRTLTAV-DSALMVIDAAKGVEPQT---RKLMEVCRL--RDTPIFTF 137 (526)
T ss_pred chhhH--------HHHHHHHHHC-CEEEEEEecCCCCCHHH---HHHHHHHHh--cCCCEEEE
Confidence 85432 1234455555 99999999988542222 223333222 26787664
No 245
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.88 E-value=2.2e-08 Score=95.56 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=65.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccC--CC------cceeeeEEEEEEe--cCc--eEEEEeCCCCCCCCcch---
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQP--YA------FTTKSLYVGHTDY--KYL--RWQVIDTPGILDHSLED--- 302 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~--~~------~tT~~~~~~~~~~--~~~--~~~liDTPG~~~~~~~~--- 302 (358)
.++|++||.+|+|||||+|.|++....... .+ ..|..+....... ++. .+.++||||+.+.....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 368999999999999999999987643221 11 1122222222222 232 56899999998763321
Q ss_pred ---HHHHHHHHHHHHhhc------------ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEE
Q psy15712 303 ---RNIIEMQAVTALAHL------------RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGP 355 (358)
Q Consensus 303 ---~~~ie~~~~~~l~~~------------~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvi 355 (358)
.+.++.+...++.+- -|++||+++++... .. ...++.++++.....=.|+|
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~-~~Di~~mk~Ls~~vNvIPvI 149 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LK-PLDIEFMKRLSKRVNVIPVI 149 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S--HHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-ch-HHHHHHHHHhcccccEEeEE
Confidence 123344444444321 16899999987532 22 23577888887764445554
No 246
>KOG0098|consensus
Probab=98.88 E-value=3.1e-08 Score=87.38 Aligned_cols=105 Identities=21% Similarity=0.167 Sum_probs=71.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEE--EEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYV--GHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAV 311 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~--~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~ 311 (358)
..+++.++|.+|||||+|+-+++...+. +.+ .|.++-. ..+..++. ++++|||.|.- .+...+.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe--------~frsv~~ 73 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQE--------SFRSVTR 73 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcH--------HHHHHHH
Confidence 3467899999999999999999988864 322 4555443 34445544 77999999993 3344456
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEE
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGP 355 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvi 355 (358)
++++.. .++|+|+|++....++ ..-.||..++... .|.-++
T Consensus 74 syYr~a-~GalLVydit~r~sF~--hL~~wL~D~rq~~~~NmvIm 115 (216)
T KOG0098|consen 74 SYYRGA-AGALLVYDITRRESFN--HLTSWLEDARQHSNENMVIM 115 (216)
T ss_pred HHhccC-cceEEEEEccchhhHH--HHHHHHHHHHHhcCCCcEEE
Confidence 677776 7899999999865543 3345777776542 344433
No 247
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.88 E-value=3.8e-09 Score=104.22 Aligned_cols=57 Identities=32% Similarity=0.505 Sum_probs=47.1
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCC------CcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRAD------VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~------~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~ 298 (358)
..+++||.||||||||+|+|++.. ..++++|+||++.....+ +..+.++||||+...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCCh
Confidence 589999999999999999999753 368899999998775443 235689999999864
No 248
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.88 E-value=2e-08 Score=105.00 Aligned_cols=105 Identities=20% Similarity=0.175 Sum_probs=69.8
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCc------c----------cCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcch
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVD------V----------QPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLED 302 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~------v----------~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~ 302 (358)
++|+++|..++|||||+++|+..... + ...-+.|.......+.|++..+.+|||||..+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF---- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF---- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH----
Confidence 37999999999999999999842110 1 112256766667778899999999999998542
Q ss_pred HHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 303 RNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 303 ~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
......+++.. |++++|+|+++...... ..++..+... +.|+|++
T Consensus 78 ----~~ev~~~l~~a-D~alLVVDa~~G~~~qT---~~~l~~a~~~--~ip~IVv 122 (594)
T TIGR01394 78 ----GGEVERVLGMV-DGVLLLVDASEGPMPQT---RFVLKKALEL--GLKPIVV 122 (594)
T ss_pred ----HHHHHHHHHhC-CEEEEEEeCCCCCcHHH---HHHHHHHHHC--CCCEEEE
Confidence 11233455555 99999999987432222 2334433332 5676654
No 249
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.87 E-value=1.7e-08 Score=100.75 Aligned_cols=97 Identities=16% Similarity=0.116 Sum_probs=64.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC-------C---------cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD-------V---------DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~-------~---------~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~ 300 (358)
+..+|+++|..++|||||+++|++.. . ......++|.+.....+..++.++.+|||||..+
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~--- 87 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--- 87 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH---
Confidence 45789999999999999999998421 0 0112257788877666666677899999999842
Q ss_pred chHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHH
Q psy15712 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLF 342 (358)
Q Consensus 301 ~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll 342 (358)
+-......+... |++++|+|+++.......+.+.++
T Consensus 88 -----f~~~~~~~~~~~-D~~ilVvda~~g~~~qt~e~l~~~ 123 (394)
T TIGR00485 88 -----YVKNMITGAAQM-DGAILVVSATDGPMPQTREHILLA 123 (394)
T ss_pred -----HHHHHHHHHhhC-CEEEEEEECCCCCcHHHHHHHHHH
Confidence 112233344444 999999999875433333334433
No 250
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.87 E-value=2.7e-08 Score=90.19 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=51.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCc--ccC-CCcceeeeEEEEEEec---------------------------C-----
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVD--VQP-YAFTTKSLYVGHTDYK---------------------------Y----- 284 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~--v~~-~~~tT~~~~~~~~~~~---------------------------~----- 284 (358)
+|+++|..++|||||+.+|++.... ... .-+.|.......+.+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 6899999999999999999875211 000 0011222221111111 2
Q ss_pred -ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCC
Q psy15712 285 -LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 285 -~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~ 330 (358)
.++.+|||||.. .+...+..++... |++++|+|++.+
T Consensus 82 ~~~i~~iDtPG~~--------~~~~~~~~~~~~~-D~~llVvd~~~~ 119 (203)
T cd01888 82 VRHVSFVDCPGHE--------ILMATMLSGAAVM-DGALLLIAANEP 119 (203)
T ss_pred ccEEEEEECCChH--------HHHHHHHHhhhcC-CEEEEEEECCCC
Confidence 678999999952 2333344555555 999999999974
No 251
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.86 E-value=1.7e-08 Score=106.60 Aligned_cols=108 Identities=15% Similarity=0.100 Sum_probs=69.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCccc-----------CC----------------------CcceeeeEEEEEEec
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQ-----------PY----------------------AFTTKSLYVGHTDYK 283 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~-----------~~----------------------~~tT~~~~~~~~~~~ 283 (358)
...+|+++|.+|+|||||+|+|+.....+. .. .+.|.+.....+.++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 346799999999999999999985332110 01 245666666677788
Q ss_pred CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 284 YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 284 ~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+.++.++||||..+ +.......+... |++++|+|++........+.+.++..+ ..+|+|++
T Consensus 103 ~~~~~liDtPG~~~--------f~~~~~~~~~~a-D~~llVvda~~g~~~~t~e~~~~~~~~----~~~~iivv 163 (632)
T PRK05506 103 KRKFIVADTPGHEQ--------YTRNMVTGASTA-DLAIILVDARKGVLTQTRRHSFIASLL----GIRHVVLA 163 (632)
T ss_pred CceEEEEECCChHH--------HHHHHHHHHHhC-CEEEEEEECCCCccccCHHHHHHHHHh----CCCeEEEE
Confidence 88999999999631 112223344444 999999999875443334444444443 12566543
No 252
>PLN03126 Elongation factor Tu; Provisional
Probab=98.86 E-value=2.7e-08 Score=101.55 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=66.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC----------------cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV----------------DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~----------------~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~ 300 (358)
...+|+++|.+++|||||+++|++... ......+.|.+.....+.+++.++.+|||||..+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~--- 156 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD--- 156 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH---
Confidence 457899999999999999999985211 1122346777777777777888999999999842
Q ss_pred chHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHH
Q psy15712 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLF 342 (358)
Q Consensus 301 ~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll 342 (358)
+-......+... |++++|+|+.........+.+.++
T Consensus 157 -----f~~~~~~g~~~a-D~ailVVda~~G~~~qt~e~~~~~ 192 (478)
T PLN03126 157 -----YVKNMITGAAQM-DGAILVVSGADGPMPQTKEHILLA 192 (478)
T ss_pred -----HHHHHHHHHhhC-CEEEEEEECCCCCcHHHHHHHHHH
Confidence 222234445444 999999999875433333333333
No 253
>PRK10218 GTP-binding protein; Provisional
Probab=98.86 E-value=2.9e-08 Score=103.90 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=62.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcc----------------cCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDV----------------QPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE 301 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v----------------~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 301 (358)
..+|+++|..++|||||+++|+...... ....+.|.......+.+++..+.+|||||..+..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~-- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG-- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH--
Confidence 4589999999999999999998632110 1123566666667778888999999999986532
Q ss_pred hHHHHHHHHHHHHhhcccEEEEEEeCCCCC
Q psy15712 302 DRNIIEMQAVTALAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 302 ~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~ 331 (358)
..+..+++.. |++++|+|+++..
T Consensus 83 ------~~v~~~l~~a-Dg~ILVVDa~~G~ 105 (607)
T PRK10218 83 ------GEVERVMSMV-DSVLLVVDAFDGP 105 (607)
T ss_pred ------HHHHHHHHhC-CEEEEEEecccCc
Confidence 1233455555 9999999998743
No 254
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.86 E-value=2.9e-08 Score=104.23 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=64.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC---cccCCCcceeeeEEEEEEe-cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADV---DVQPYAFTTKSLYVGHTDY-KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~---~v~~~~~tT~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
.|+++|.+++|||||+++|+|.+. ......+.|.+.....+.. ++..+.+|||||.. .+-..+...+.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe--------~fi~~m~~g~~ 73 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE--------KFLSNMLAGVG 73 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH--------HHHHHHHHHhh
Confidence 689999999999999999998543 2233356777766555544 45678999999972 12222334444
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHH
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFK 343 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~ 343 (358)
.. |++++|+|+++.......+.+.++.
T Consensus 74 ~~-D~~lLVVda~eg~~~qT~ehl~il~ 100 (614)
T PRK10512 74 GI-DHALLVVACDDGVMAQTREHLAILQ 100 (614)
T ss_pred cC-CEEEEEEECCCCCcHHHHHHHHHHH
Confidence 54 9999999998855443344444443
No 255
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.85 E-value=3.1e-08 Score=102.26 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=67.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC--CCC----ccc----------CC------CcceeeeEEEEEEecCceEEEEeCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR--ADV----DVQ----------PY------AFTTKSLYVGHTDYKYLRWQVIDTPG 294 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~--~~~----~v~----------~~------~~tT~~~~~~~~~~~~~~~~liDTPG 294 (358)
+.++|+++|.+|+|||||+++|+. ... .+. ++ -+.|.......+.+++..+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 356899999999999999999852 111 111 11 13344455566788889999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 295 ILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 295 ~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
..+. ...+..++... |++++|+|++.......+. +++.... .++|++++
T Consensus 90 ~~df--------~~~~~~~l~~a-D~aIlVvDa~~gv~~~t~~---l~~~~~~--~~~Piivv 138 (527)
T TIGR00503 90 HEDF--------SEDTYRTLTAV-DNCLMVIDAAKGVETRTRK---LMEVTRL--RDTPIFTF 138 (527)
T ss_pred hhhH--------HHHHHHHHHhC-CEEEEEEECCCCCCHHHHH---HHHHHHh--cCCCEEEE
Confidence 9432 12234456655 9999999998743222222 2222222 36787765
No 256
>PRK13796 GTPase YqeH; Provisional
Probab=98.85 E-value=4.6e-09 Score=103.80 Aligned_cols=57 Identities=30% Similarity=0.409 Sum_probs=45.4
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCC------CcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRAD------VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~------~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~ 298 (358)
..+++||.||||||||+|+|.+.. ..+++.|+||++.....+. ....++||||+...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~---~~~~l~DTPGi~~~ 223 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD---DGSFLYDTPGIIHR 223 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC---CCcEEEECCCcccc
Confidence 479999999999999999998532 3478999999998765442 23589999999754
No 257
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.85 E-value=1.9e-08 Score=101.42 Aligned_cols=85 Identities=14% Similarity=0.156 Sum_probs=62.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC--Cc-----------------------------ccCCCcceeeeEEEEEEecCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD--VD-----------------------------VQPYAFTTKSLYVGHTDYKYL 285 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~--~~-----------------------------v~~~~~tT~~~~~~~~~~~~~ 285 (358)
...+|+++|.+++|||||+++|+... +. .....++|.+.....+.+++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 45789999999999999999998421 10 011347788888888888888
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCC
Q psy15712 286 RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 286 ~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~ 330 (358)
.+.+|||||..+ +-......+... |++++|+|+++.
T Consensus 86 ~i~iiDtpGh~~--------f~~~~~~~~~~a-D~~ilVvDa~~~ 121 (426)
T TIGR00483 86 EVTIVDCPGHRD--------FIKNMITGASQA-DAAVLVVAVGDG 121 (426)
T ss_pred EEEEEECCCHHH--------HHHHHHhhhhhC-CEEEEEEECCCC
Confidence 999999999621 111223334444 999999999986
No 258
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.85 E-value=1.2e-08 Score=100.66 Aligned_cols=118 Identities=15% Similarity=0.089 Sum_probs=78.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC----CC------------cccCCCc---ceeeeEE---EEEEec-----CceEEE
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA----DV------------DVQPYAF---TTKSLYV---GHTDYK-----YLRWQV 289 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~----~~------------~v~~~~~---tT~~~~~---~~~~~~-----~~~~~l 289 (358)
+...|+++|..|+|||||+|++++. +. .+++.++ +|.++.. ..+... ..++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 5678999999999999999999987 32 2566777 7777765 333332 148899
Q ss_pred EeCCCCCCCCcchHHHH---------------------HHHHHHHHh-hcccEEEEEE-eCCCC----CCCCHHHHHHHH
Q psy15712 290 IDTPGILDHSLEDRNII---------------------EMQAVTALA-HLRAAVLYFI-DISEQ----CGHSIQEQIGLF 342 (358)
Q Consensus 290 iDTPG~~~~~~~~~~~i---------------------e~~~~~~l~-~~~d~iL~Vv-D~s~~----~~~~~~~q~~ll 342 (358)
+||+|+.+...-+.... +-=+...+. |. |..|+|. |.|-. ..+ .+...+++
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhs-tIgivVtTDgsi~dI~Re~y-~~aEe~~i 173 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHS-TIGVVVTTDGTITDIPREDY-VEAEERVI 173 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcC-cEEEEEEcCCCccccccccc-hHHHHHHH
Confidence 99999987532221111 111556677 55 8777887 76510 122 23346677
Q ss_pred HHHcccCCCCeEEEeC
Q psy15712 343 KSIRPLFNNKVGPLEY 358 (358)
Q Consensus 343 ~~i~~~f~~kPvilvf 358 (358)
+++++. +||+++|.
T Consensus 174 ~eLk~~--~kPfiivl 187 (492)
T TIGR02836 174 EELKEL--NKPFIILL 187 (492)
T ss_pred HHHHhc--CCCEEEEE
Confidence 777776 89999873
No 259
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.84 E-value=8.3e-09 Score=89.28 Aligned_cols=56 Identities=29% Similarity=0.417 Sum_probs=43.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~ 295 (358)
...+++++|.+|||||||+|+|.+... .+++.+++|....... . +..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVK--I-TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEE--c-CCCEEEEECcCC
Confidence 456789999999999999999997664 4677788876654322 2 347899999996
No 260
>KOG0080|consensus
Probab=98.83 E-value=2.9e-08 Score=85.60 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=67.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+-+++...+......+...+..+..+..+|. ++.+|||+|.-. +..++.++++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqEr--------FRtLTpSyyR 82 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQER--------FRTLTPSYYR 82 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHh--------hhccCHhHhc
Confidence 468999999999999999999876654222222334556666777776 568999999942 3334556666
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHH
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSI 345 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i 345 (358)
.. .++|+|+|++....+ ...-.|++++
T Consensus 83 ga-qGiIlVYDVT~Rdtf--~kLd~W~~El 109 (209)
T KOG0080|consen 83 GA-QGIILVYDVTSRDTF--VKLDIWLKEL 109 (209)
T ss_pred cC-ceeEEEEEccchhhH--HhHHHHHHHH
Confidence 65 899999999985443 2223456665
No 261
>PRK13351 elongation factor G; Reviewed
Probab=98.82 E-value=3e-08 Score=105.75 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=70.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC------cc------cC------CCcceeeeEEEEEEecCceEEEEeCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV------DV------QP------YAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~------~v------~~------~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~ 298 (358)
..++|+++|..|+|||||+++|+.... .+ .+ ..+.|.......+.|.+..+.+|||||..+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 346899999999999999999974211 01 11 1234555556677888899999999998542
Q ss_pred CcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 299 ~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
...+..+++.. |++++|+|++......... ++..+... ++|++++
T Consensus 87 --------~~~~~~~l~~a-D~~ilVvd~~~~~~~~~~~---~~~~~~~~--~~p~iiv 131 (687)
T PRK13351 87 --------TGEVERSLRVL-DGAVVVFDAVTGVQPQTET---VWRQADRY--GIPRLIF 131 (687)
T ss_pred --------HHHHHHHHHhC-CEEEEEEeCCCCCCHHHHH---HHHHHHhc--CCCEEEE
Confidence 22344566666 9999999998855433333 33333222 6787765
No 262
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.81 E-value=4.8e-08 Score=102.29 Aligned_cols=85 Identities=22% Similarity=0.254 Sum_probs=56.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc---------ccC------CCcceeeeEEEEEEec---C--ceEEEEeCCCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD---------VQP------YAFTTKSLYVGHTDYK---Y--LRWQVIDTPGILD 297 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~---------v~~------~~~tT~~~~~~~~~~~---~--~~~~liDTPG~~~ 297 (358)
.++++++|.+|+|||||+++|+..... ..+ ..+.|.......+.|. + ..+.+|||||..+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 358999999999999999999854211 111 1244555444445442 2 4689999999964
Q ss_pred CCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC
Q psy15712 298 HSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 298 ~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~ 331 (358)
. ......+++.. |++++|+|+++..
T Consensus 83 F--------~~~v~~~l~~a-D~aILVvDat~g~ 107 (595)
T TIGR01393 83 F--------SYEVSRSLAAC-EGALLLVDAAQGI 107 (595)
T ss_pred H--------HHHHHHHHHhC-CEEEEEecCCCCC
Confidence 2 11233456665 9999999999854
No 263
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.80 E-value=2.3e-08 Score=90.30 Aligned_cols=106 Identities=16% Similarity=0.085 Sum_probs=62.2
Q ss_pred cEEEEecCCCCCHHHHHH-HHhCCCCc----ccCCCccee--eeEEEE--------EEecC--ceEEEEeCCCCCCCCcc
Q psy15712 239 RTIIICGFPNVGKSSFLN-KITRADVD----VQPYAFTTK--SLYVGH--------TDYKY--LRWQVIDTPGILDHSLE 301 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin-~L~~~~~~----v~~~~~tT~--~~~~~~--------~~~~~--~~~~liDTPG~~~~~~~ 301 (358)
.+|+++|.+|||||||++ .+.+..+. ...+..|.. +..... ..+++ ..+++|||+|....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 579999999999999996 55544321 222322221 111111 12333 36799999998431
Q ss_pred hHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 302 DRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 302 ~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
+ ...+++.. |++++|+|++++..+ +... .|+..+.....+.|+++|
T Consensus 80 ----~---~~~~~~~a-d~iilv~d~t~~~Sf--~~~~~~w~~~i~~~~~~~piilv 126 (195)
T cd01873 80 ----D---RRFAYGRS-DVVLLCFSIASPNSL--RNVKTMWYPEIRHFCPRVPVILV 126 (195)
T ss_pred ----h---hcccCCCC-CEEEEEEECCChhHH--HHHHHHHHHHHHHhCCCCCEEEE
Confidence 1 11234444 999999999985443 3222 355656543346788876
No 264
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.80 E-value=7e-09 Score=90.72 Aligned_cols=73 Identities=26% Similarity=0.256 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCC-Cc---c----cCCCcceeeeEEEEEEecCceEEE
Q psy15712 218 LEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRAD-VD---V----QPYAFTTKSLYVGHTDYKYLRWQV 289 (358)
Q Consensus 218 l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~-~~---v----~~~~~tT~~~~~~~~~~~~~~~~l 289 (358)
...++.++..++ ..+++++|.+|||||||+|.|.+.. .. + +..-+||.......+ . ....|
T Consensus 23 ~~g~~~l~~~l~--------~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l--~-~g~~i 91 (161)
T PF03193_consen 23 GEGIEELKELLK--------GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL--P-DGGYI 91 (161)
T ss_dssp TTTHHHHHHHHT--------TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE--T-TSEEE
T ss_pred CcCHHHHHHHhc--------CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec--C-CCcEE
Confidence 455677777775 3589999999999999999999863 22 2 223466666555444 2 35689
Q ss_pred EeCCCCCCCCcc
Q psy15712 290 IDTPGILDHSLE 301 (358)
Q Consensus 290 iDTPG~~~~~~~ 301 (358)
|||||+-+....
T Consensus 92 IDTPGf~~~~l~ 103 (161)
T PF03193_consen 92 IDTPGFRSFGLW 103 (161)
T ss_dssp ECSHHHHT--GC
T ss_pred EECCCCCccccc
Confidence 999999876554
No 265
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.79 E-value=5.2e-08 Score=89.97 Aligned_cols=105 Identities=14% Similarity=0.056 Sum_probs=61.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCC--------------Ccceeee------------------------EEEEEE
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPY--------------AFTTKSL------------------------YVGHTD 281 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~--------------~~tT~~~------------------------~~~~~~ 281 (358)
+|+++|..++|||||+++++......+.. .+.|... ....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 37899999999999999998533211000 0111100 001223
Q ss_pred ecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh-hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 282 YKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA-HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 282 ~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~-~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
..+..+.++||||..+ +...+...+. ..+|++++|+|+......... +++..+... ++|++++
T Consensus 81 ~~~~~i~liDtpG~~~--------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~---~~l~~l~~~--~ip~ivv 144 (224)
T cd04165 81 KSSKLVTFIDLAGHER--------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK---EHLGLALAL--NIPVFVV 144 (224)
T ss_pred eCCcEEEEEECCCcHH--------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHH---HHHHHHHHc--CCCEEEE
Confidence 4467899999999732 1222333443 346999999999876543333 333333333 6787776
No 266
>PRK12289 GTPase RsgA; Reviewed
Probab=98.79 E-value=9.9e-09 Score=100.78 Aligned_cols=58 Identities=26% Similarity=0.286 Sum_probs=44.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC-CcccCCCc-------ceeeeEEEEEEecCceEEEEeCCCCCCCCc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRAD-VDVQPYAF-------TTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~-------tT~~~~~~~~~~~~~~~~liDTPG~~~~~~ 300 (358)
+++|+|.||||||||+|+|.+.. ..++..+. ||++.....+.- | ..|+||||+.....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g--~~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-G--GLLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-C--cEEEeCCCcccccc
Confidence 58999999999999999999765 44555554 888876544422 2 37999999987655
No 267
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.79 E-value=3.8e-07 Score=88.55 Aligned_cols=201 Identities=19% Similarity=0.247 Sum_probs=111.7
Q ss_pred HHHHhhhhhhHHHHHHHHHhHhhhCCCCCCCchhHHHHHHHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCChH
Q psy15712 115 SFYMRKIKYTQSNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLY 194 (358)
Q Consensus 115 ~~~~~~l~~~~~~~~~~l~~i~~~fp~~d~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~~ 194 (358)
+.+...++.+...+.+.+.++.. -..+|+ +|+.+|.+.+...| ...+.|+.++.++.+.... ....+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~--~~~~~l~~~L~~~d------v~~~~a~~i~~~~~~~~~~--~~~~~-- 84 (318)
T PRK10416 18 ERLKKGLSKTRENFGEGINGLFA-KKKIDE--DLLEELEELLIEAD------VGVETTEEIIEELRERVKR--KNLKD-- 84 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHhc--cCCCC--
Confidence 34556688888999999999875 355665 58889988888888 4466677777776654322 11111
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhC------CCCcccCC
Q psy15712 195 RCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITR------ADVDVQPY 268 (358)
Q Consensus 195 ~~~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~------~~~~v~~~ 268 (358)
...++......+..++.... ..+.........++++|.+|+||||++..|.+ .++.+.+.
T Consensus 85 -~~~~~~~l~~~l~~~l~~~~-------------~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 85 -PEELKELLKEELAEILEPVE-------------KPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred -HHHHHHHHHHHHHHHhCcCC-------------ccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 11222222222222221000 00111112456899999999999999999873 22221111
Q ss_pred -Ccc-----------e-eeeEEEEE-----------------EecCceEEEEeCCCCCCCCcchHHHHHHHHHH---HHh
Q psy15712 269 -AFT-----------T-KSLYVGHT-----------------DYKYLRWQVIDTPGILDHSLEDRNIIEMQAVT---ALA 315 (358)
Q Consensus 269 -~~t-----------T-~~~~~~~~-----------------~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~---~l~ 315 (358)
++. . .+...... ...+..+.+|||||........++++.+.... .+.
T Consensus 151 D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~ 230 (318)
T PRK10416 151 DTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADP 230 (318)
T ss_pred CccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcC
Confidence 110 0 01100000 01345789999999987655555555443221 112
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHH
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKS 344 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~ 344 (358)
..++.+++|+|++. +.+.-.|...+.+
T Consensus 231 ~~p~~~~LVl~a~~--g~~~~~~a~~f~~ 257 (318)
T PRK10416 231 DAPHEVLLVLDATT--GQNALSQAKAFHE 257 (318)
T ss_pred CCCceEEEEEECCC--ChHHHHHHHHHHh
Confidence 34678999999985 5544445555543
No 268
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.78 E-value=5.3e-08 Score=95.80 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=60.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC---ccc--CCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV---DVQ--PYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVT 312 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~---~v~--~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~ 312 (358)
...|+|+|.+|+|||||||+|.|-.. ..+ ...-||........ -....+.+||.||+..........++..
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~--- 110 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEV--- 110 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHT---
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHc---
Confidence 46899999999999999999986321 111 11234444443221 2224799999999986654443333321
Q ss_pred HHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 313 ALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
-+... |.+|+|.+ . .+ .+..+.+...+... +||+.+|
T Consensus 111 ~~~~y-D~fiii~s--~--rf-~~ndv~La~~i~~~--gK~fyfV 147 (376)
T PF05049_consen 111 KFYRY-DFFIIISS--E--RF-TENDVQLAKEIQRM--GKKFYFV 147 (376)
T ss_dssp TGGG--SEEEEEES--S--S---HHHHHHHHHHHHT--T-EEEEE
T ss_pred ccccc-CEEEEEeC--C--CC-chhhHHHHHHHHHc--CCcEEEE
Confidence 12233 87777654 2 22 23457788888776 7888876
No 269
>KOG1547|consensus
Probab=98.78 E-value=7e-08 Score=88.47 Aligned_cols=117 Identities=26% Similarity=0.384 Sum_probs=71.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc--------ccCCCcceeeeEEEEE-EecCc--eEEEEeCCCCCCCCcchH--
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD--------VQPYAFTTKSLYVGHT-DYKYL--RWQVIDTPGILDHSLEDR-- 303 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~--------v~~~~~tT~~~~~~~~-~~~~~--~~~liDTPG~~~~~~~~~-- 303 (358)
-.+.|++||.+|.|||||+|.|+..++. ..++|.||.--...|. .-++. ++.++|||||.|.-.++.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 3579999999999999999999865432 1244544443333333 22333 568999999998744321
Q ss_pred H----HHHHHHHHHHh---------hcc----cEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEE
Q psy15712 304 N----IIEMQAVTALA---------HLR----AAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGP 355 (358)
Q Consensus 304 ~----~ie~~~~~~l~---------~~~----d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvi 355 (358)
+ .+..+.-.+|+ +.+ +++||++-+++.+-..+ .++.++.+.....-.|+|
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrpl--DieflkrLt~vvNvvPVI 191 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPL--DIEFLKRLTEVVNVVPVI 191 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcc--cHHHHHHHhhhheeeeeE
Confidence 1 12222222332 122 58999999887764433 366777776655446765
No 270
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.77 E-value=9e-08 Score=97.77 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=65.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccC---------------------------------CCcceeeeEEEEEEec
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQP---------------------------------YAFTTKSLYVGHTDYK 283 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~---------------------------------~~~tT~~~~~~~~~~~ 283 (358)
...+|+++|.+++|||||+++|+...-.+.. .-+.|.+.....+.++
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 4578999999999999999999743211100 0134566666677778
Q ss_pred CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHH
Q psy15712 284 YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSI 345 (358)
Q Consensus 284 ~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i 345 (358)
+.++.+|||||..+ +.......+.. +|++++|+|++........+.+.++..+
T Consensus 106 ~~~i~~iDTPGh~~--------f~~~~~~~l~~-aD~allVVDa~~G~~~qt~~~~~l~~~l 158 (474)
T PRK05124 106 KRKFIIADTPGHEQ--------YTRNMATGAST-CDLAILLIDARKGVLDQTRRHSFIATLL 158 (474)
T ss_pred CcEEEEEECCCcHH--------HHHHHHHHHhh-CCEEEEEEECCCCccccchHHHHHHHHh
Confidence 88999999999521 21223334444 4999999999875443333444444443
No 271
>PRK12288 GTPase RsgA; Reviewed
Probab=98.76 E-value=3.2e-08 Score=97.14 Aligned_cols=59 Identities=29% Similarity=0.350 Sum_probs=43.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC-CcccCCC-------cceeeeEEEEEEecCceEEEEeCCCCCCCCcc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRAD-VDVQPYA-------FTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE 301 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~-------~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 301 (358)
+++++|.||||||||+|+|.+.. ..++..+ +||+......+..+ ..|+||||+......
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~l~ 273 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFGLW 273 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcccCC
Confidence 58999999999999999999865 3344443 57777666555322 369999999877554
No 272
>KOG0070|consensus
Probab=98.75 E-value=1.2e-08 Score=89.83 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|..|+||||++++|...++-.. .| |.+..+..+.+.+.++++||.-|...- ...+..++.+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vP--TiGfnVE~v~ykn~~f~vWDvGGq~k~--------R~lW~~Y~~~ 84 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VP--TIGFNVETVEYKNISFTVWDVGGQEKL--------RPLWKHYFQN 84 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CC--ccccceeEEEEcceEEEEEecCCCccc--------ccchhhhccC
Confidence 456899999999999999999987664322 33 888899999999999999999999432 2234456666
Q ss_pred cccEEEEEEeCCCCCCC
Q psy15712 317 LRAAVLYFIDISEQCGH 333 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~ 333 (358)
. ++++||+|.++..+.
T Consensus 85 t-~~lIfVvDS~Dr~Ri 100 (181)
T KOG0070|consen 85 T-QGLIFVVDSSDRERI 100 (181)
T ss_pred C-cEEEEEEeCCcHHHH
Confidence 6 999999999986544
No 273
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.75 E-value=6.8e-08 Score=96.86 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=65.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcc---------------c------------------CCCcceeeeEEEEEEecCce
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDV---------------Q------------------PYAFTTKSLYVGHTDYKYLR 286 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v---------------~------------------~~~~tT~~~~~~~~~~~~~~ 286 (358)
+|+++|..++|||||+++|+...-.+ + ..-+.|.+.....+.+++.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 68999999999999999996322100 0 01245677777778888889
Q ss_pred EEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHH
Q psy15712 287 WQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSI 345 (358)
Q Consensus 287 ~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i 345 (358)
+.++||||..+ +-......+... |++++|+|++........+.+.++..+
T Consensus 82 ~~liDtPGh~~--------f~~~~~~~~~~a-D~allVVda~~G~~~qt~~~~~~~~~~ 131 (406)
T TIGR02034 82 FIVADTPGHEQ--------YTRNMATGASTA-DLAVLLVDARKGVLEQTRRHSYIASLL 131 (406)
T ss_pred EEEEeCCCHHH--------HHHHHHHHHhhC-CEEEEEEECCCCCccccHHHHHHHHHc
Confidence 99999999632 211223445544 999999999886544444445554443
No 274
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.73 E-value=2.4e-08 Score=93.51 Aligned_cols=59 Identities=29% Similarity=0.332 Sum_probs=43.8
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCC-cccC-------CCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADV-DVQP-------YAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE 301 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~-~v~~-------~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 301 (358)
..++++|.||||||||+|+|.+... .+++ ..+||++...-.+ . ...++||||+......
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~--~~~liDtPG~~~~~l~ 187 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H--GGLIADTPGFNEFGLW 187 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C--CcEEEeCCCccccCCC
Confidence 3789999999999999999997642 2222 3468887776554 2 2389999999876543
No 275
>KOG0086|consensus
Probab=98.72 E-value=1.4e-07 Score=80.73 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=65.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
.++++++|..|.|||+|+..+...+..-..-.....+.-...+.++++ ++|+|||+|.. .+...+.++++
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQE--------rFRSVtRsYYR 80 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQE--------RFRSVTRSYYR 80 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHH--------HHHHHHHHHhc
Confidence 357899999999999999999876654222111122222223344443 67999999993 34445666666
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL 348 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~ 348 (358)
.. .+.++|+|+++...+ ...-.|+..++..
T Consensus 81 GA-AGAlLVYD~Tsrdsf--naLtnWL~DaR~l 110 (214)
T KOG0086|consen 81 GA-AGALLVYDITSRDSF--NALTNWLTDARTL 110 (214)
T ss_pred cc-cceEEEEeccchhhH--HHHHHHHHHHHhh
Confidence 66 778999999985544 4455677776654
No 276
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.71 E-value=1.8e-08 Score=89.76 Aligned_cols=109 Identities=13% Similarity=0.200 Sum_probs=57.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe---cCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY---KYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~---~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
.+.|+++|.+|+|||+|+..|+..... .-+|....... ... .+..+.+||+||...-. ..+.. ....+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~---~T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr----~~~~~-~~~~~ 73 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV---PTVTSMENNIA-YNVNNSKGKKLRLVDIPGHPRLR----SKLLD-ELKYL 73 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS------B---SSEEEE-CCGSSTCGTCECEEEETT-HCCC----HHHHH-HHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC---CeeccccCCce-EEeecCCCCEEEEEECCCcHHHH----HHHHH-hhhch
Confidence 468999999999999999999976321 00112222222 222 45689999999985432 11110 11134
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcc----cCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRP----LFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~----~f~~kPvilv 357 (358)
..+ .+|+||+|++. ...+..+..+.|..+.. .-...|++|+
T Consensus 74 ~~~-k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIa 118 (181)
T PF09439_consen 74 SNA-KGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIA 118 (181)
T ss_dssp GGE-EEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEE
T ss_pred hhC-CEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEE
Confidence 444 88999999874 11123333444444321 1234677665
No 277
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.71 E-value=1e-07 Score=87.96 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=52.3
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCC--cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADV--DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
.....|+++|.+|+|||||+|+|.+... .+....++ .. .....+.++.++||||.. . .....
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i~--i~~~~~~~i~~vDtPg~~------~-----~~l~~ 100 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP---IT--VVTGKKRRLTFIECPNDI------N-----AMIDI 100 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc---EE--EEecCCceEEEEeCCchH------H-----HHHHH
Confidence 3556899999999999999999987521 12222221 11 122356789999999853 1 12223
Q ss_pred HhhcccEEEEEEeCCCCCC
Q psy15712 314 LAHLRAAVLYFIDISEQCG 332 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~ 332 (358)
+. .+|++++|+|++....
T Consensus 101 ak-~aDvVllviDa~~~~~ 118 (225)
T cd01882 101 AK-VADLVLLLIDASFGFE 118 (225)
T ss_pred HH-hcCEEEEEEecCcCCC
Confidence 33 3499999999987543
No 278
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.71 E-value=1.5e-07 Score=98.75 Aligned_cols=85 Identities=25% Similarity=0.290 Sum_probs=56.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc---------c------cCCCcceeeeEEEEEEec-----CceEEEEeCCCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD---------V------QPYAFTTKSLYVGHTDYK-----YLRWQVIDTPGILD 297 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~---------v------~~~~~tT~~~~~~~~~~~-----~~~~~liDTPG~~~ 297 (358)
.++++++|..++|||||+.+|...... + ....+.|.......+.|. +..+.+|||||..+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 458999999999999999999753211 0 011244444444444443 35789999999965
Q ss_pred CCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC
Q psy15712 298 HSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 298 ~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~ 331 (358)
.. .....+++.. |++|+|+|+++..
T Consensus 87 F~--------~~v~~sl~~a-D~aILVVDas~gv 111 (600)
T PRK05433 87 FS--------YEVSRSLAAC-EGALLVVDASQGV 111 (600)
T ss_pred HH--------HHHHHHHHHC-CEEEEEEECCCCC
Confidence 31 1233455555 9999999999854
No 279
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.71 E-value=1.2e-07 Score=95.16 Aligned_cols=108 Identities=18% Similarity=0.148 Sum_probs=62.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcc---cCCCcceeeeEEEEE--------------------------EecCceE
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDV---QPYAFTTKSLYVGHT--------------------------DYKYLRW 287 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v---~~~~~tT~~~~~~~~--------------------------~~~~~~~ 287 (358)
...+|+++|.+++|||||+++|++..... .-..+.|.+.....+ ...+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 35689999999999999999998743211 001122222221110 0113578
Q ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC-CCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 288 QVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC-GHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 288 ~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~-~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+|||||..+ +...+...+.. +|++++|+|+++.+ .....+.+.++... ..+|++++
T Consensus 83 ~liDtPGh~~--------f~~~~~~g~~~-aD~aIlVVDa~~g~~~~qt~e~l~~l~~~----gi~~iIVv 140 (406)
T TIGR03680 83 SFVDAPGHET--------LMATMLSGAAL-MDGALLVIAANEPCPQPQTKEHLMALEII----GIKNIVIV 140 (406)
T ss_pred EEEECCCHHH--------HHHHHHHHHHH-CCEEEEEEECCCCccccchHHHHHHHHHc----CCCeEEEE
Confidence 9999999732 22223333333 49999999999865 33333444444322 23566554
No 280
>KOG0091|consensus
Probab=98.71 E-value=4.8e-08 Score=84.47 Aligned_cols=107 Identities=21% Similarity=0.185 Sum_probs=73.7
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec-C--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK-Y--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
+++.++|.+-||||||+..++..+..--.-|+...+...+.+... | .++|+|||+|. +.....+.++++
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq--------erfrsitksyyr 80 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ--------ERFRSITKSYYR 80 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch--------HHHHHHHHHHhh
Confidence 578899999999999999999887643334544444444433332 2 36799999999 345566778888
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEE
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPL 356 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvil 356 (358)
+. -++++|+|+++.. +.+..-.|+.+-.-. -+.|++++
T Consensus 81 ns-vgvllvyditnr~--sfehv~~w~~ea~m~~q~P~k~VFl 120 (213)
T KOG0091|consen 81 NS-VGVLLVYDITNRE--SFEHVENWVKEAAMATQGPDKVVFL 120 (213)
T ss_pred cc-cceEEEEeccchh--hHHHHHHHHHHHHHhcCCCCeeEEE
Confidence 87 7899999999844 445555666654321 14566554
No 281
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.70 E-value=6.1e-08 Score=92.30 Aligned_cols=69 Identities=25% Similarity=0.289 Sum_probs=48.6
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCC-Cc---cc----CCCcceeeeEEEEEEecCceEEEEeC
Q psy15712 221 LEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRAD-VD---VQ----PYAFTTKSLYVGHTDYKYLRWQVIDT 292 (358)
Q Consensus 221 l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~-~~---v~----~~~~tT~~~~~~~~~~~~~~~~liDT 292 (358)
++.+...+. ..+.+++|.+|||||||+|+|.+.. .. ++ ..-+||+....-++.-+| .|+||
T Consensus 155 ~~~l~~~l~--------~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDT 223 (301)
T COG1162 155 LEELAELLA--------GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDT 223 (301)
T ss_pred HHHHHHHhc--------CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeC
Confidence 445555554 3488999999999999999998643 12 22 334788777766654333 89999
Q ss_pred CCCCCCCc
Q psy15712 293 PGILDHSL 300 (358)
Q Consensus 293 PG~~~~~~ 300 (358)
|||-....
T Consensus 224 PGf~~~~l 231 (301)
T COG1162 224 PGFRSLGL 231 (301)
T ss_pred CCCCccCc
Confidence 99987654
No 282
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.67 E-value=2.4e-07 Score=89.86 Aligned_cols=117 Identities=22% Similarity=0.225 Sum_probs=74.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCccc----CCCc----ceeeeEEEEEEe--cCc--eEEEEeCCCCCCCCcch--
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQ----PYAF----TTKSLYVGHTDY--KYL--RWQVIDTPGILDHSLED-- 302 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~----~~~~----tT~~~~~~~~~~--~~~--~~~liDTPG~~~~~~~~-- 302 (358)
-.++|++||..|.||||++|.|++....-. +... .|..+......+ +|. .+.++||||+++.-.+.
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999998743211 1111 222233322222 232 66899999999863322
Q ss_pred ----HHHHHHHHHHHHhhc-------------ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEE
Q psy15712 303 ----RNIIEMQAVTALAHL-------------RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGP 355 (358)
Q Consensus 303 ----~~~ie~~~~~~l~~~-------------~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvi 355 (358)
.+.++.+...++.+- .+++||++-+++.+-.. -.++.++++.+.+.-.|||
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~--~DIe~Mk~ls~~vNlIPVI 169 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKP--LDIEAMKRLSKRVNLIPVI 169 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCH--HHHHHHHHHhcccCeeeee
Confidence 133444555555422 16899999987654322 2578888888776667876
No 283
>KOG0394|consensus
Probab=98.65 E-value=5.2e-08 Score=85.82 Aligned_cols=85 Identities=22% Similarity=0.258 Sum_probs=57.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCccc-----CCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQ-----PYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAV 311 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~-----~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~ 311 (358)
...+|.+.|.+|||||||+|.+...++... ...|.|++..+..- -..+|||||+|.-.. ..+..
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~---~vtlQiWDTAGQERF--------qsLg~ 76 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDR---SVTLQIWDTAGQERF--------QSLGV 76 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCe---EEEEEEEecccHHHh--------hhccc
Confidence 456899999999999999999997765432 33455665554311 136799999999432 22222
Q ss_pred HHHhhcccEEEEEEeCCCCCCC
Q psy15712 312 TALAHLRAAVLYFIDISEQCGH 333 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~ 333 (358)
..++. +|+.++|+|+.....+
T Consensus 77 aFYRg-aDcCvlvydv~~~~Sf 97 (210)
T KOG0394|consen 77 AFYRG-ADCCVLVYDVNNPKSF 97 (210)
T ss_pred ceecC-CceEEEEeecCChhhh
Confidence 33444 4999999999885543
No 284
>KOG0093|consensus
Probab=98.65 E-value=3.9e-07 Score=77.62 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=73.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..++.++|.+.||||||+-+.++..+..+-+.+...+..+..+.-+. .++|+|||+|... ....+-.+++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr--------yrtiTTayyR 92 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER--------YRTITTAYYR 92 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchh--------hhHHHHHHhh
Confidence 45899999999999999999998877655554444454444443333 4679999999942 2223334455
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcc-cCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRP-LFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~-~f~~kPvilv 357 (358)
.. +++++++|+++..++ .....|.-.|+- ...|.|+|+|
T Consensus 93 ga-mgfiLmyDitNeeSf--~svqdw~tqIktysw~naqvilv 132 (193)
T KOG0093|consen 93 GA-MGFILMYDITNEESF--NSVQDWITQIKTYSWDNAQVILV 132 (193)
T ss_pred cc-ceEEEEEecCCHHHH--HHHHHHHHHheeeeccCceEEEE
Confidence 54 999999999986544 223344444442 2348899987
No 285
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.64 E-value=1.3e-07 Score=101.19 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=58.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC----------cccCC------CcceeeeEEE----EEEecCceEEEEeCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV----------DVQPY------AFTTKSLYVG----HTDYKYLRWQVIDTPGIL 296 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~----------~v~~~------~~tT~~~~~~----~~~~~~~~~~liDTPG~~ 296 (358)
..++|+++|..++|||||+++|+.... ...++ .+.|...... .+.+.+..+.+|||||..
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 346899999999999999999963210 00011 2334333222 245567789999999997
Q ss_pred CCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCH
Q psy15712 297 DHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSI 335 (358)
Q Consensus 297 ~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~ 335 (358)
+.. ..+..++... |++++|+|+........
T Consensus 98 ~f~--------~~~~~al~~a-D~~llVvda~~g~~~~t 127 (720)
T TIGR00490 98 DFG--------GDVTRAMRAV-DGAIVVVCAVEGVMPQT 127 (720)
T ss_pred ccH--------HHHHHHHHhc-CEEEEEEecCCCCCccH
Confidence 532 1234566666 99999999987543333
No 286
>KOG1487|consensus
Probab=98.64 E-value=1.5e-08 Score=93.66 Aligned_cols=94 Identities=30% Similarity=0.494 Sum_probs=77.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
..++.++|.|.+||||+++.|++...+++.|-|||.....|...+.+-++|+.|.||+++...+.+.. .++.+ +....
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgr-g~qvi-avart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGR-GKQVI-AVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCC-ccEEE-EEeec
Confidence 34799999999999999999999999999999999999999999999999999999999876554332 12222 23334
Q ss_pred ccEEEEEEeCCCCCCC
Q psy15712 318 RAAVLYFIDISEQCGH 333 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~ 333 (358)
..+++.|+|+..+.++
T Consensus 137 cnli~~vld~~kp~~h 152 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSH 152 (358)
T ss_pred ccEEEEEeeccCcccH
Confidence 4889999999987754
No 287
>KOG0075|consensus
Probab=98.64 E-value=7.3e-08 Score=81.99 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=72.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
...+.++|.-|+|||||+|.+......- +-..|.+.....++-+...+.+||.||.-.. +.. +-.+++..
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~e--dmiptvGfnmrk~tkgnvtiklwD~gGq~rf----rsm----WerycR~v 89 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF----RSM----WERYCRGV 89 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchh--hhcccccceeEEeccCceEEEEEecCCCccH----HHH----HHHHhhcC
Confidence 3468999999999999999998765431 1223777888888777789999999998432 222 33455555
Q ss_pred ccEEEEEEeCCCCCCCCHHH--HHHHHHHHcccCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQE--QIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~--q~~ll~~i~~~f~~kPvilv 357 (358)
++++||+|++++...+... ...++.. +...+.|++++
T Consensus 90 -~aivY~VDaad~~k~~~sr~EL~~LL~k--~~l~gip~LVL 128 (186)
T KOG0075|consen 90 -SAIVYVVDAADPDKLEASRSELHDLLDK--PSLTGIPLLVL 128 (186)
T ss_pred -cEEEEEeecCCcccchhhHHHHHHHhcc--hhhcCCcEEEe
Confidence 9999999999965443322 2222322 34456787653
No 288
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.62 E-value=3.7e-07 Score=92.63 Aligned_cols=86 Identities=13% Similarity=0.139 Sum_probs=61.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-------------------------------cccCCCcceeeeEEEEEEecCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-------------------------------DVQPYAFTTKSLYVGHTDYKYL 285 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-------------------------------~v~~~~~tT~~~~~~~~~~~~~ 285 (358)
...+|+++|..++|||||+.+|+.... ......+.|.+.....+.+++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 456899999999999999999873110 0011236788887888888888
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC
Q psy15712 286 RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 286 ~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~ 331 (358)
.+.++||||..+ +-......+.. +|++++|+|++...
T Consensus 86 ~i~lIDtPGh~~--------f~~~~~~g~~~-aD~ailVVda~~G~ 122 (446)
T PTZ00141 86 YFTIIDAPGHRD--------FIKNMITGTSQ-ADVAILVVASTAGE 122 (446)
T ss_pred EEEEEECCChHH--------HHHHHHHhhhh-cCEEEEEEEcCCCc
Confidence 999999999632 22223344444 49999999998753
No 289
>KOG2655|consensus
Probab=98.62 E-value=4e-07 Score=88.74 Aligned_cols=117 Identities=24% Similarity=0.257 Sum_probs=74.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-------ccCCCcceeeeEEEEEEe--cCc--eEEEEeCCCCCCCCcch---
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-------VQPYAFTTKSLYVGHTDY--KYL--RWQVIDTPGILDHSLED--- 302 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-------v~~~~~tT~~~~~~~~~~--~~~--~~~liDTPG~~~~~~~~--- 302 (358)
-.+++.+||..|.|||||+|.|++.... ....+..|..+....... +|. ++.|+||||+.+.-.+.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 3589999999999999999999977432 111222244443333333 232 66899999999753221
Q ss_pred ---HHHHHHHHHHHHhhc------------ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEE
Q psy15712 303 ---RNIIEMQAVTALAHL------------RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGP 355 (358)
Q Consensus 303 ---~~~ie~~~~~~l~~~------------~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvi 355 (358)
.+.++.+...++.+- .+++||++.+++..-.. -.++.++.+...+.=.|+|
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p--~Di~~Mk~l~~~vNiIPVI 165 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKP--LDIEFMKKLSKKVNLIPVI 165 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcH--hhHHHHHHHhcccccccee
Confidence 133444544454321 16899999877653222 2577888888777667876
No 290
>PTZ00416 elongation factor 2; Provisional
Probab=98.61 E-value=3.5e-07 Score=99.43 Aligned_cols=107 Identities=17% Similarity=0.115 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcc-cCCC---------------cceeeeEEEEEEec----------CceEEEE
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDV-QPYA---------------FTTKSLYVGHTDYK----------YLRWQVI 290 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v-~~~~---------------~tT~~~~~~~~~~~----------~~~~~li 290 (358)
...+|+++|..++|||||+++|......+ .... +.|.......+.|. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 34589999999999999999998532111 0111 23333322334443 4568999
Q ss_pred eCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 291 DTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 291 DTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
||||..+. ......+++.. |++++|+|++.......+. ++..+... ++|+|++
T Consensus 98 DtPG~~~f--------~~~~~~al~~~-D~ailVvda~~g~~~~t~~---~~~~~~~~--~~p~iv~ 150 (836)
T PTZ00416 98 DSPGHVDF--------SSEVTAALRVT-DGALVVVDCVEGVCVQTET---VLRQALQE--RIRPVLF 150 (836)
T ss_pred cCCCHHhH--------HHHHHHHHhcC-CeEEEEEECCCCcCccHHH---HHHHHHHc--CCCEEEE
Confidence 99999652 12234555555 9999999999865544443 33443332 5677665
No 291
>KOG2486|consensus
Probab=98.61 E-value=4.1e-07 Score=85.15 Aligned_cols=115 Identities=20% Similarity=0.176 Sum_probs=78.7
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCC---cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCC--CcchHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADV---DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH--SLEDRNIIEMQA 310 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~---~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~--~~~~~~~ie~~~ 310 (358)
.+.+.+++.|.+|||||||+|.++..+. ...+.++.|+.++..++ +.+|.++|.||+... +.+....+...+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHhH
Confidence 4568999999999999999999998663 23346777777665544 479999999995433 223333444455
Q ss_pred HHHHhhcc--cEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 311 VTALAHLR--AAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 311 ~~~l~~~~--d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
..++.+-. -.+++++|++-+....+...++++.+- +.|..+||
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~-----~VP~t~vf 255 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN-----NVPMTSVF 255 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc-----CCCeEEee
Confidence 55554432 347778899987766555556666553 67887776
No 292
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.61 E-value=1.7e-07 Score=80.34 Aligned_cols=75 Identities=23% Similarity=0.403 Sum_probs=49.1
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCC-CCCCcchHHHHHHHHHHHHhhc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI-LDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~-~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
.+|+++|.+|+|||||+++|.+....... |..+. +.+ .+|||||- ++.+ ... .++.....-
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~K----Tq~i~-----~~~---~~IDTPGEyiE~~----~~y--~aLi~ta~d 63 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKK----TQAIE-----YYD---NTIDTPGEYIENP----RFY--HALIVTAQD 63 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCc----cceeE-----ecc---cEEECChhheeCH----HHH--HHHHHHHhh
Confidence 37999999999999999999996653221 33322 211 45999995 3322 211 222333334
Q ss_pred ccEEEEEEeCCCCC
Q psy15712 318 RAAVLYFIDISEQC 331 (358)
Q Consensus 318 ~d~iL~VvD~s~~~ 331 (358)
+|+|++|.|++.+.
T Consensus 64 ad~V~ll~dat~~~ 77 (143)
T PF10662_consen 64 ADVVLLLQDATEPR 77 (143)
T ss_pred CCEEEEEecCCCCC
Confidence 59999999999853
No 293
>KOG0074|consensus
Probab=98.61 E-value=2.5e-07 Score=78.27 Aligned_cols=85 Identities=21% Similarity=0.364 Sum_probs=64.7
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecC-ceEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKY-LRWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
.+..+|++.|..|+||||++..|.+.++. +.+ |.++....+.+.+ .++.+||.-|.-. +.-.+-.+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~f~LnvwDiGGqr~--------IRpyWsNY 82 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGTFHLNVWDIGGQRG--------IRPYWSNY 82 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCcEEEEEEecCCccc--------cchhhhhh
Confidence 35778999999999999999999998864 333 5666666666666 6899999999843 22235567
Q ss_pred HhhcccEEEEEEeCCCCCCC
Q psy15712 314 LAHLRAAVLYFIDISEQCGH 333 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~ 333 (358)
+.+. |.++||+|.++.-.+
T Consensus 83 yenv-d~lIyVIDS~D~krf 101 (185)
T KOG0074|consen 83 YENV-DGLIYVIDSTDEKRF 101 (185)
T ss_pred hhcc-ceEEEEEeCCchHhH
Confidence 7777 999999997765443
No 294
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.57 E-value=2.6e-07 Score=85.65 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=55.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC-CcccCCCcceeeeEEEEEEec-CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYK-YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~tT~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+|+++|..++||||..+.+++.- +.-..+...|.++...++... ...+.+||+||....-... ...+....+++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~---~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY---FNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT---HTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc---ccccHHHHHhcc
Confidence 58999999999999999999764 333345566777777777544 4599999999997542211 111122345666
Q ss_pred ccEEEEEEeCCCC
Q psy15712 318 RAAVLYFIDISEQ 330 (358)
Q Consensus 318 ~d~iL~VvD~s~~ 330 (358)
++++||+|+...
T Consensus 78 -~~LIyV~D~qs~ 89 (232)
T PF04670_consen 78 -GVLIYVFDAQSD 89 (232)
T ss_dssp -SEEEEEEETT-S
T ss_pred -CEEEEEEEcccc
Confidence 899999999843
No 295
>PRK12740 elongation factor G; Reviewed
Probab=98.57 E-value=4.7e-07 Score=96.35 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=65.8
Q ss_pred ecCCCCCHHHHHHHHhCCC---Cc---------ccC------CCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHH
Q psy15712 244 CGFPNVGKSSFLNKITRAD---VD---------VQP------YAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNI 305 (358)
Q Consensus 244 vG~~nvGKSSLin~L~~~~---~~---------v~~------~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ 305 (358)
+|.+|+|||||+++|.... .. +.+ ..+.|.......+.+.+..+.+|||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~------- 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF------- 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence 6999999999999995321 11 111 2355666777788889999999999998531
Q ss_pred HHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 306 IEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 306 ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
...+..++... |++++|+|++....... ..++..+... ++|++++
T Consensus 74 -~~~~~~~l~~a-D~vllvvd~~~~~~~~~---~~~~~~~~~~--~~p~iiv 118 (668)
T PRK12740 74 -TGEVERALRVL-DGAVVVVCAVGGVEPQT---ETVWRQAEKY--GVPRIIF 118 (668)
T ss_pred -HHHHHHHHHHh-CeEEEEEeCCCCcCHHH---HHHHHHHHHc--CCCEEEE
Confidence 12234455555 99999999988543222 2333333332 6787775
No 296
>PRK00098 GTPase RsgA; Reviewed
Probab=98.53 E-value=1.7e-07 Score=90.14 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=41.8
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCC-cccCCC-------cceeeeEEEEEEecCceEEEEeCCCCCCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADV-DVQPYA-------FTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~-------~tT~~~~~~~~~~~~~~~~liDTPG~~~~~ 299 (358)
.+++++|.+|||||||+|+|++... .++..+ +||+......+.. ...++||||+....
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~~~ 230 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSSFG 230 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCccC
Confidence 4789999999999999999998652 333333 4776665544432 34899999998543
No 297
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.53 E-value=7e-07 Score=89.73 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=62.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc---ccCCCcceeeeEEEEEEec--------------------------CceE
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD---VQPYAFTTKSLYVGHTDYK--------------------------YLRW 287 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~---v~~~~~tT~~~~~~~~~~~--------------------------~~~~ 287 (358)
...+|+++|..++|||||+.+|++.... -.-..+.|.+.......+. ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 4578999999999999999999874211 1112234544432221110 2478
Q ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC-CCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 288 QVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC-GHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 288 ~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~-~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+|||||..+ +...+...+... |++++|+|++++. .....+.+.++... ..+|+++|
T Consensus 88 ~liDtPG~~~--------f~~~~~~~~~~~-D~~llVVDa~~~~~~~~t~~~l~~l~~~----~i~~iiVV 145 (411)
T PRK04000 88 SFVDAPGHET--------LMATMLSGAALM-DGAILVIAANEPCPQPQTKEHLMALDII----GIKNIVIV 145 (411)
T ss_pred EEEECCCHHH--------HHHHHHHHHhhC-CEEEEEEECCCCCCChhHHHHHHHHHHc----CCCcEEEE
Confidence 9999999621 222233333444 9999999999754 33333344443322 22455554
No 298
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.50 E-value=1.2e-06 Score=95.32 Aligned_cols=107 Identities=17% Similarity=0.102 Sum_probs=65.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcc----------cC------CCcceeeeEEEEEEec----------------C
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDV----------QP------YAFTTKSLYVGHTDYK----------------Y 284 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v----------~~------~~~tT~~~~~~~~~~~----------------~ 284 (358)
+-++|+++|..++|||||+++|+.....+ .+ .-+.|.......+.|. +
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 45689999999999999999997432110 01 0133333333334442 4
Q ss_pred ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 285 LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 285 ~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
..+.++||||..+. -.....+++.. |++++|+|+++......+.. ++.+... ++|+|++
T Consensus 98 ~~inliDtPGh~dF--------~~e~~~al~~~-D~ailVvda~~Gv~~~t~~~---~~~~~~~--~~p~i~~ 156 (843)
T PLN00116 98 YLINLIDSPGHVDF--------SSEVTAALRIT-DGALVVVDCIEGVCVQTETV---LRQALGE--RIRPVLT 156 (843)
T ss_pred eEEEEECCCCHHHH--------HHHHHHHHhhc-CEEEEEEECCCCCcccHHHH---HHHHHHC--CCCEEEE
Confidence 57789999999542 12234455555 99999999998654444433 3333222 5676654
No 299
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.46 E-value=2.3e-06 Score=75.55 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=73.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC--------cccCC--CcceeeeEEEEEEecC-ceEEEEeCCCCCCCCcchHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV--------DVQPY--AFTTKSLYVGHTDYKY-LRWQVIDTPGILDHSLEDRNI 305 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~--------~v~~~--~~tT~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~ 305 (358)
...+|++.|.-++||||++.+++.... ..+.. ..||...-.|++.+.+ ..+.++||||..+
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R-------- 80 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER-------- 80 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH--------
Confidence 356899999999999999999997652 11111 2478888888888777 7899999999943
Q ss_pred HHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 306 IEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 306 ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+.. .+..+...+.++++++|.+.+........++.+....+ .|+++.
T Consensus 81 F~f-m~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa 127 (187)
T COG2229 81 FKF-MWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVA 127 (187)
T ss_pred HHH-HHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEE
Confidence 222 33445555689999999998766533333444433211 566653
No 300
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.45 E-value=1.6e-06 Score=93.22 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=60.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcc----------cCC------CcceeeeEEEEEEe----cCceEEEEeCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDV----------QPY------AFTTKSLYVGHTDY----KYLRWQVIDTPGIL 296 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v----------~~~------~~tT~~~~~~~~~~----~~~~~~liDTPG~~ 296 (358)
+.++|+++|..++|||||+.+|+.....+ .++ -+.|.......+.| .+..+.++||||..
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 35589999999999999999997422110 011 12344443333333 35578899999997
Q ss_pred CCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHH
Q psy15712 297 DHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGL 341 (358)
Q Consensus 297 ~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~l 341 (358)
+.. .....++... |++++|+|+........+..+..
T Consensus 99 df~--------~~~~~~l~~~-D~avlVvda~~g~~~~t~~~~~~ 134 (731)
T PRK07560 99 DFG--------GDVTRAMRAV-DGAIVVVDAVEGVMPQTETVLRQ 134 (731)
T ss_pred ChH--------HHHHHHHHhc-CEEEEEEECCCCCCccHHHHHHH
Confidence 631 1234556565 99999999988654444444433
No 301
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.40 E-value=1.4e-06 Score=83.53 Aligned_cols=58 Identities=24% Similarity=0.218 Sum_probs=40.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCC-ccc-------CCCcceeeeEEEEEEecCceEEEEeCCCCCCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADV-DVQ-------PYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~-~v~-------~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~ 299 (358)
.+++++|.+|||||||+|.|++... .++ ...+||.......+.. ...++||||+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCccC
Confidence 4799999999999999999998642 222 2335677665444432 23799999996543
No 302
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.37 E-value=2.3e-05 Score=78.81 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=59.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHh------CCCCc-ccCCCc-----------cee-ee-EEEEEE-e--------------
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT------RADVD-VQPYAF-----------TTK-SL-YVGHTD-Y-------------- 282 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~------~~~~~-v~~~~~-----------tT~-~~-~~~~~~-~-------------- 282 (358)
...|+++|.+||||||++.+|. |.++. ++.-++ +.. +. ...... .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999997 44433 221111 111 00 111000 0
Q ss_pred -cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHH
Q psy15712 283 -KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKS 344 (358)
Q Consensus 283 -~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~ 344 (358)
.+..+.||||||..........++.... .. ..++.+++|+|++. |.....+.+.|.+
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~--~~-~~p~e~lLVlda~~--Gq~a~~~a~~F~~ 237 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVA--EA-IQPDNIIFVMDGSI--GQAAEAQAKAFKD 237 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHh--hh-cCCcEEEEEecccc--ChhHHHHHHHHHh
Confidence 2468899999998654323333222211 11 12578999999875 6666667777764
No 303
>KOG0071|consensus
Probab=98.34 E-value=4.5e-06 Score=70.71 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=63.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...|+.+|.+++||||++.+|+-... .+-+ |.++.+..+++.+..+.+||.-|.. .+..++..++..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~ip----TvGFnvetVtykN~kfNvwdvGGqd--------~iRplWrhYy~g 84 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYKNVKFNVWDVGGQD--------KIRPLWRHYYTG 84 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCccccc----ccceeEEEEEeeeeEEeeeeccCch--------hhhHHHHhhccC
Confidence 56799999999999999999986553 2322 6778888889999999999999983 345555556555
Q ss_pred cccEEEEEEeCCCCC
Q psy15712 317 LRAAVLYFIDISEQC 331 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~ 331 (358)
. .++|||+|+++..
T Consensus 85 t-qglIFV~Dsa~~d 98 (180)
T KOG0071|consen 85 T-QGLIFVVDSADRD 98 (180)
T ss_pred C-ceEEEEEeccchh
Confidence 5 8899999988753
No 304
>KOG0395|consensus
Probab=98.33 E-value=2.8e-06 Score=76.95 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=71.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||+|+..+.+..+. ..|..|.-+.....+..++. .+.|+||+|..+.+ .+ ...++.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~-~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~-----~~---~~~~~~ 73 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV-EDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS-----AM---RDLYIR 73 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc-cccCCCccccceEEEEECCEEEEEEEEcCCCcccCh-----HH---HHHhhc
Confidence 457999999999999999999877653 34555666666666666655 56799999953322 11 122444
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
.. ++.++|+++++...+ +..-.++..|.. .-...|+++|
T Consensus 74 ~~-~gF~lVysitd~~SF--~~~~~l~~~I~r~~~~~~~PivlV 114 (196)
T KOG0395|consen 74 NG-DGFLLVYSITDRSSF--EEAKQLREQILRVKGRDDVPIILV 114 (196)
T ss_pred cC-cEEEEEEECCCHHHH--HHHHHHHHHHHHhhCcCCCCEEEE
Confidence 55 999999999996554 333344444421 1234688886
No 305
>PRK14974 cell division protein FtsY; Provisional
Probab=98.31 E-value=3.3e-06 Score=82.48 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=59.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC------CCCc-ccCCCc-----------ce-eee--EEEEE---------------
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR------ADVD-VQPYAF-----------TT-KSL--YVGHT--------------- 280 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~------~~~~-v~~~~~-----------tT-~~~--~~~~~--------------- 280 (358)
+...|+++|.||+||||++.+|.. .++. +....+ .. .+. .....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 356899999999999998888862 2221 111100 00 000 00000
Q ss_pred EecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHH
Q psy15712 281 DYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKS 344 (358)
Q Consensus 281 ~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~ 344 (358)
...+..+.||||||........+..+.... .. ..+|.+++|+|++. +.+..+|...|..
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~-~~--~~pd~~iLVl~a~~--g~d~~~~a~~f~~ 277 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIV-RV--TKPDLVIFVGDALA--GNDAVEQAREFNE 277 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHH-Hh--hCCceEEEeecccc--chhHHHHHHHHHh
Confidence 012457899999999876544444443321 11 12588999999976 5666666666654
No 306
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.28 E-value=6.4e-06 Score=83.64 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=60.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC----------C---------------------cccCCCcceeeeEEEEEEecCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD----------V---------------------DVQPYAFTTKSLYVGHTDYKYL 285 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~----------~---------------------~v~~~~~tT~~~~~~~~~~~~~ 285 (358)
...+|+++|..++|||||+-+|+... + .....-+.|.+....++.+.+.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 45689999999999999999886210 0 0011236777777777888888
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCC
Q psy15712 286 RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 286 ~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~ 330 (358)
.+.++||||..+ +-......+... |++++|+|++..
T Consensus 86 ~i~liDtPGh~d--------f~~~~~~g~~~a-D~aIlVVda~~G 121 (447)
T PLN00043 86 YCTVIDAPGHRD--------FIKNMITGTSQA-DCAVLIIDSTTG 121 (447)
T ss_pred EEEEEECCCHHH--------HHHHHHhhhhhc-cEEEEEEEcccC
Confidence 999999999732 222334455444 999999999874
No 307
>KOG4252|consensus
Probab=98.25 E-value=7e-07 Score=78.41 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=74.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe--cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY--KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
...++++|.-+|||||++.+.|..-+..........+.....+.. .+.+.++|||+|.-+ ....+..+++
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeE--------fDaItkAyyr 91 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEE--------FDAITKAYYR 91 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchh--------HHHHHHHHhc
Confidence 467899999999999999999965433222222222333333322 234678999999932 3333445555
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.. .+.++|+.-++ .++.+...+|.+++.......|.++|
T Consensus 92 ga-qa~vLVFSTTD--r~SFea~~~w~~kv~~e~~~IPtV~v 130 (246)
T KOG4252|consen 92 GA-QASVLVFSTTD--RYSFEATLEWYNKVQKETERIPTVFV 130 (246)
T ss_pred cc-cceEEEEeccc--HHHHHHHHHHHHHHHHHhccCCeEEe
Confidence 55 77778887666 67778889999999877778898876
No 308
>KOG0090|consensus
Probab=98.21 E-value=5.5e-06 Score=74.89 Aligned_cols=97 Identities=13% Similarity=0.244 Sum_probs=66.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh-
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH- 316 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~- 316 (358)
...|.++|..++|||+|+-.|..... ....|+..+..+.+.++.....++|.||-.. +.......+.+
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~---~~TvtSiepn~a~~r~gs~~~~LVD~PGH~r--------lR~kl~e~~~~~ 106 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSH---RGTVTSIEPNEATYRLGSENVTLVDLPGHSR--------LRRKLLEYLKHN 106 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCc---cCeeeeeccceeeEeecCcceEEEeCCCcHH--------HHHHHHHHcccc
Confidence 35899999999999999999986532 1223455567777777777889999999832 22333344554
Q ss_pred -cccEEEEEEeCCCCCCCCHHHHHHHHHHHc
Q psy15712 317 -LRAAVLYFIDISEQCGHSIQEQIGLFKSIR 346 (358)
Q Consensus 317 -~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~ 346 (358)
.+-+|+||+|+..- ..+..+..++|..+.
T Consensus 107 ~~akaiVFVVDSa~f-~k~vrdvaefLydil 136 (238)
T KOG0090|consen 107 YSAKAIVFVVDSATF-LKNVRDVAEFLYDIL 136 (238)
T ss_pred ccceeEEEEEecccc-chhhHHHHHHHHHHH
Confidence 34789999997753 334555566666543
No 309
>KOG0088|consensus
Probab=98.20 E-value=1e-06 Score=75.91 Aligned_cols=101 Identities=20% Similarity=0.265 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccC-----CCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQP-----YAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAV 311 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~-----~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~ 311 (358)
-.+++++.|..-||||||+-+.+..++.-.. ..|.++....+-. ...+.||||+|.-. +..+..
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~---ra~L~IWDTAGQEr--------fHALGP 80 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDC---RADLHIWDTAGQER--------FHALGP 80 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccc---eeeeeeeeccchHh--------hhccCc
Confidence 4578999999999999999988866543222 2244444433221 23568999999843 222233
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCC
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNN 351 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~ 351 (358)
.+++.. +++|+|+|+++ ..+.+..-.|..+++....+
T Consensus 81 IYYRgS-nGalLVyDITD--rdSFqKVKnWV~Elr~mlGn 117 (218)
T KOG0088|consen 81 IYYRGS-NGALLVYDITD--RDSFQKVKNWVLELRTMLGN 117 (218)
T ss_pred eEEeCC-CceEEEEeccc--hHHHHHHHHHHHHHHHHhCC
Confidence 344555 89999999998 44556667788887765544
No 310
>KOG0076|consensus
Probab=98.19 E-value=3.7e-06 Score=73.61 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=64.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC---ccc--CCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV---DVQ--PYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVT 312 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~---~v~--~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~ 312 (358)
...|+++|..|+|||||+-++..... ... ..-.+|.....+++.+++..+.+||.-|.- ....++..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe--------~lrSlw~~ 88 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE--------SLRSLWKK 88 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH--------HHHHHHHH
Confidence 45799999999999999998864322 111 223568889999999998899999999983 23333444
Q ss_pred HHhhcccEEEEEEeCCCCCCC
Q psy15712 313 ALAHLRAAVLYFIDISEQCGH 333 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~ 333 (358)
++..+ ++++||+|++++.++
T Consensus 89 yY~~~-H~ii~viDa~~~eR~ 108 (197)
T KOG0076|consen 89 YYWLA-HGIIYVIDATDRERF 108 (197)
T ss_pred HHHHh-ceeEEeecCCCHHHH
Confidence 55555 899999999985544
No 311
>KOG0097|consensus
Probab=98.18 E-value=2e-05 Score=66.71 Aligned_cols=97 Identities=21% Similarity=0.156 Sum_probs=63.3
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeee--EEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSL--YVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~--~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
+.-.++|.-|||||+|+..++.+++. ++.|+ |.++ -.+.+.+.|. ++|+|||+|.. .+...+.+++
T Consensus 12 fkyiiigdmgvgkscllhqftekkfm-adcph-tigvefgtriievsgqkiklqiwdtagqe--------rfravtrsyy 81 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPH-TIGVEFGTRIIEVSGQKIKLQIWDTAGQE--------RFRAVTRSYY 81 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHh-hcCCc-ccceecceeEEEecCcEEEEEEeecccHH--------HHHHHHHHHh
Confidence 46688999999999999999987653 34443 2222 2233444444 67999999983 2333455566
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL 348 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~ 348 (358)
+.. .+.|.|+|++....++- .-.|+..-+..
T Consensus 82 rga-agalmvyditrrstynh--lsswl~dar~l 112 (215)
T KOG0097|consen 82 RGA-AGALMVYDITRRSTYNH--LSSWLTDARNL 112 (215)
T ss_pred ccc-cceeEEEEehhhhhhhh--HHHHHhhhhcc
Confidence 655 77899999998665533 23455554443
No 312
>KOG0077|consensus
Probab=98.12 E-value=9e-06 Score=70.74 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=70.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
..++++.|..|+|||||++.|...+... -.| |.+++...+..++.+++.+|.-|-.. ..+.+..++...
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvP--TlHPTSE~l~Ig~m~ftt~DLGGH~q--------Arr~wkdyf~~v 88 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVP--TLHPTSEELSIGGMTFTTFDLGGHLQ--------ARRVWKDYFPQV 88 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccc-cCC--CcCCChHHheecCceEEEEccccHHH--------HHHHHHHHHhhh
Confidence 4589999999999999999998776431 122 66677777788899999999999742 122233444444
Q ss_pred ccEEEEEEeCCCCCCCCH-HHHHHHHHHHcccCCCCeEEE
Q psy15712 318 RAAVLYFIDISEQCGHSI-QEQIGLFKSIRPLFNNKVGPL 356 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~-~~q~~ll~~i~~~f~~kPvil 356 (358)
|+++|++|+-+..++.. ...++.+-.... .++.|+++
T Consensus 89 -~~iv~lvda~d~er~~es~~eld~ll~~e~-la~vp~li 126 (193)
T KOG0077|consen 89 -DAIVYLVDAYDQERFAESKKELDALLSDES-LATVPFLI 126 (193)
T ss_pred -ceeEeeeehhhHHHhHHHHHHHHHHHhHHH-HhcCccee
Confidence 99999999987554422 222333322221 24566665
No 313
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.11 E-value=7.1e-05 Score=71.21 Aligned_cols=105 Identities=20% Similarity=0.266 Sum_probs=57.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC------CCCcccC-CCc-----------ce-eeeEEEEE-----------------
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR------ADVDVQP-YAF-----------TT-KSLYVGHT----------------- 280 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~------~~~~v~~-~~~-----------tT-~~~~~~~~----------------- 280 (358)
+...|+++|.+|+||||++..|.. .++.+-+ -++ .. .+......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 456889999999999999988862 2222111 000 00 00000000
Q ss_pred EecCceEEEEeCCCCCCCCcchHHHHHHHHHHH---HhhcccEEEEEEeCCCCCCCCHHHHHHHHH
Q psy15712 281 DYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTA---LAHLRAAVLYFIDISEQCGHSIQEQIGLFK 343 (358)
Q Consensus 281 ~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~---l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~ 343 (358)
...+..+.++||||..........++....... +...+|.+++|+|++. +.....+...+.
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~ 214 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFN 214 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHH
Confidence 013468899999999765333333333322111 1223588999999974 444444444444
No 314
>PRK13768 GTPase; Provisional
Probab=98.09 E-value=7.8e-06 Score=76.88 Aligned_cols=72 Identities=18% Similarity=0.098 Sum_probs=37.2
Q ss_pred ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh-cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 285 LRWQVIDTPGILDHSLEDRNIIEMQAVTALAH-LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 285 ~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~-~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
..+.+|||||..+.... +.. .......+.. .+++++||+|++............++........++|+++|+
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~-~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~ 169 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RES-GRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVL 169 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHH-HHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 37899999998653211 111 1112222322 158999999997744322222222222211112368888874
No 315
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=0.00024 Score=76.01 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...+++||.+||||||++.+|++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 45899999999999999999985
No 316
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=4.3e-05 Score=81.12 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=68.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh---CCCC---ccc------CC------CcceeeeEEEEEEecC-ceEEEEeCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT---RADV---DVQ------PY------AFTTKSLYVGHTDYKY-LRWQVIDTPGILD 297 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~---~~~~---~v~------~~------~~tT~~~~~~~~~~~~-~~~~liDTPG~~~ 297 (358)
+.++|+++|+-.+|||||.-+|. |.-. .+. ++ -+.|.......+.|.+ .++.+|||||..|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 45689999999999999999986 2111 111 11 2667677777788996 9999999999998
Q ss_pred CCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHH
Q psy15712 298 HSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFK 343 (358)
Q Consensus 298 ~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~ 343 (358)
...+ ...+++-+ |+++.|+|+........+..++...
T Consensus 89 Ft~E--------V~rslrvl-DgavvVvdaveGV~~QTEtv~rqa~ 125 (697)
T COG0480 89 FTIE--------VERSLRVL-DGAVVVVDAVEGVEPQTETVWRQAD 125 (697)
T ss_pred cHHH--------HHHHHHhh-cceEEEEECCCCeeecHHHHHHHHh
Confidence 6422 23456666 9999999999865444444444333
No 317
>KOG0393|consensus
Probab=98.03 E-value=3.6e-06 Score=75.79 Aligned_cols=110 Identities=14% Similarity=0.029 Sum_probs=73.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec-Cc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK-YL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~-~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+++||..++|||+|+...+...+...-.|... +-....+..+ |. .+.+|||+|..+-. ++...++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYD--------rlRplsY 74 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYD--------RLRPLSY 74 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccc--------cccccCC
Confidence 45799999999999999998886654433333322 3333344453 55 45799999996531 1111133
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
... |++|.+++++++..+.. -.-+|+-+++...++.|+|||.
T Consensus 75 ~~t-dvfl~cfsv~~p~S~~n-v~~kW~pEi~~~cp~vpiiLVG 116 (198)
T KOG0393|consen 75 PQT-DVFLLCFSVVSPESFEN-VKSKWIPEIKHHCPNVPIILVG 116 (198)
T ss_pred CCC-CEEEEEEEcCChhhHHH-HHhhhhHHHHhhCCCCCEEEEe
Confidence 444 89999999988654422 1356788888777889999983
No 318
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=1.9e-05 Score=80.17 Aligned_cols=126 Identities=25% Similarity=0.366 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHh---ccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcc
Q psy15712 195 RCKQLKKAALGRMATIMKRQASNLEYLEQVRQHL---SRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFT 271 (358)
Q Consensus 195 ~~~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l---~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~t 271 (358)
.++..-.++.|+|+....+... +++-..+. .+.|.-.|.++.+++||.||+||||||..|...-.. .
T Consensus 27 naKafavAa~G~mar~~~rtad----i~ekklhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk------~ 96 (1077)
T COG5192 27 NAKAFAVAAIGQMARQAMRTAD----IEEKKLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK------Q 96 (1077)
T ss_pred chhhhhhhchHHHHHHHhhccc----hhhhccccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHH------h
Confidence 3455667788888865554322 22222232 245666678888999999999999999999853211 1
Q ss_pred eeeeEEEEE---EecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHH
Q psy15712 272 TKSLYVGHT---DYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSI 345 (358)
Q Consensus 272 T~~~~~~~~---~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i 345 (358)
|.+-..|.+ .....++.+..+|.-+ + ....+...+|+||+++|.+ ||+..+. ++.|+-+
T Consensus 97 ti~~i~GPiTvvsgK~RRiTflEcp~Dl-------~-----~miDvaKIaDLVlLlIdgn--fGfEMET-mEFLnil 158 (1077)
T COG5192 97 TIDEIRGPITVVSGKTRRITFLECPSDL-------H-----QMIDVAKIADLVLLLIDGN--FGFEMET-MEFLNIL 158 (1077)
T ss_pred hhhccCCceEEeecceeEEEEEeChHHH-------H-----HHHhHHHhhheeEEEeccc--cCceehH-HHHHHHH
Confidence 111111111 1223578888888432 1 2233445569999999974 5775543 4444443
No 319
>KOG0072|consensus
Probab=98.00 E-value=5.3e-06 Score=70.57 Aligned_cols=88 Identities=30% Similarity=0.387 Sum_probs=67.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
...+|.+.|..|+||+|++-.+--.++ ...| |.+..+..+.+++.++++||.-|... +.-.++-+++
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkP----tigfnve~v~yKNLk~~vwdLggqtS--------irPyWRcYy~ 84 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKP----TIGFNVETVPYKNLKFQVWDLGGQTS--------IRPYWRCYYA 84 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCC----CCCcCccccccccccceeeEccCccc--------ccHHHHHHhc
Confidence 456899999999999999888865443 3333 45566677778888999999999854 2334556677
Q ss_pred hcccEEEEEEeCCCCCCCCHHH
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQE 337 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~ 337 (358)
+. |+++||+|.++.|..+...
T Consensus 85 dt-~avIyVVDssd~dris~a~ 105 (182)
T KOG0072|consen 85 DT-DAVIYVVDSSDRDRISIAG 105 (182)
T ss_pred cc-ceEEEEEeccchhhhhhhH
Confidence 77 9999999999998776654
No 320
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=9.3e-05 Score=75.11 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=76.9
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec---CceEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK---YLRWQVIDTPGILDHSLEDRNIIEMQAVT 312 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTPG~~~~~~~~~~~ie~~~~~ 312 (358)
.+.|.|.++|.---|||||+-.+-+.++.....-+.|.++-..++.++ ...+.++||||.... ..++++-
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF-------t~mRaRG 75 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF-------TAMRARG 75 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH-------HHHHhcC
Confidence 357899999999999999999999988877777788888877777764 468999999998321 1111111
Q ss_pred HHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 313 ALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
..+.|.+++|+|+.+...... .+.++..+.. +.|+++.
T Consensus 76 --a~vtDIaILVVa~dDGv~pQT---iEAI~hak~a--~vP~iVA 113 (509)
T COG0532 76 --ASVTDIAILVVAADDGVMPQT---IEAINHAKAA--GVPIVVA 113 (509)
T ss_pred --CccccEEEEEEEccCCcchhH---HHHHHHHHHC--CCCEEEE
Confidence 144699999999998554333 3344444333 7788764
No 321
>KOG3859|consensus
Probab=97.91 E-value=5.9e-05 Score=70.85 Aligned_cols=109 Identities=22% Similarity=0.388 Sum_probs=64.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec----C--ceEEEEeCCCCCCCCcch------HH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK----Y--LRWQVIDTPGILDHSLED------RN 304 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~----~--~~~~liDTPG~~~~~~~~------~~ 304 (358)
-.+.|+-||.+|.|||||+..|++.++...+.+++-.++.....++. + ..+.++||.|+.+.-..+ -.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 35789999999999999999999887664444443333332222221 2 266899999998753221 12
Q ss_pred HHHHHHHHHHh----------hcc----cEEEEEEeCCCCCCCCHHH-HHHHHHHHccc
Q psy15712 305 IIEMQAVTALA----------HLR----AAVLYFIDISEQCGHSIQE-QIGLFKSIRPL 348 (358)
Q Consensus 305 ~ie~~~~~~l~----------~~~----d~iL~VvD~s~~~~~~~~~-q~~ll~~i~~~ 348 (358)
.+..+.-.+|. ... +++||++.+++ +++.. .+..++.+...
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG---H~LKslDLvtmk~Ldsk 176 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG---HSLKSLDLVTMKKLDSK 176 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC---cchhHHHHHHHHHHhhh
Confidence 33333333332 111 57899998664 44443 23344554443
No 322
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.00014 Score=71.89 Aligned_cols=85 Identities=14% Similarity=0.246 Sum_probs=59.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh---CC------------------C----------CcccCCCcceeeeEEEEEEecCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT---RA------------------D----------VDVQPYAFTTKSLYVGHTDYKYL 285 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~---~~------------------~----------~~v~~~~~tT~~~~~~~~~~~~~ 285 (358)
...+++++|...+|||||+.+|+ |. . ......-+.|.+.....+..+..
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 45689999999999999999986 21 0 01123347788888878877777
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCC
Q psy15712 286 RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 286 ~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~ 330 (358)
.+.|+||||.-+. -+..+.-... +|+.++|+|++..
T Consensus 86 ~~tIiDaPGHrdF--------vknmItGasq-AD~aVLVV~a~~~ 121 (428)
T COG5256 86 NFTIIDAPGHRDF--------VKNMITGASQ-ADVAVLVVDARDG 121 (428)
T ss_pred eEEEeeCCchHHH--------HHHhhcchhh-ccEEEEEEECCCC
Confidence 8999999995321 1112222233 4999999999986
No 323
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=8.5e-05 Score=73.71 Aligned_cols=104 Identities=21% Similarity=0.253 Sum_probs=68.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHh--CCC--------------CcccCC------CcceeeeEEEEEEecCceEEEEeCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT--RAD--------------VDVQPY------AFTTKSLYVGHTDYKYLRWQVIDTPGI 295 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~--~~~--------------~~v~~~------~~tT~~~~~~~~~~~~~~~~liDTPG~ 295 (358)
..+.+|+-.|-+|||||.-+|. |.- ...++| -+.+....+-.++|.+..+.|.||||.
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 3589999999999999999886 211 112222 244445556677888999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEE
Q psy15712 296 LDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGP 355 (358)
Q Consensus 296 ~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvi 355 (358)
.|.+.+ +..+|... |+++.|+|+..... . +-+++++-.+- .+.|++
T Consensus 92 eDFSED--------TYRtLtAv-DsAvMVIDaAKGiE--~-qT~KLfeVcrl--R~iPI~ 137 (528)
T COG4108 92 EDFSED--------TYRTLTAV-DSAVMVIDAAKGIE--P-QTLKLFEVCRL--RDIPIF 137 (528)
T ss_pred cccchh--------HHHHHHhh-heeeEEEecccCcc--H-HHHHHHHHHhh--cCCceE
Confidence 876522 44555555 99999999977432 2 22444443222 366765
No 324
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.85 E-value=0.00011 Score=74.91 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
...+|+++|.-..|||||+.+|++..
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~ 58 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVK 58 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999754
No 325
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.00046 Score=68.66 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
....|+++|.+||||||++..|.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999999997
No 326
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.82 E-value=0.00014 Score=70.07 Aligned_cols=53 Identities=26% Similarity=0.402 Sum_probs=36.0
Q ss_pred HHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 202 AALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 202 ~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.+++|+.+++.+.... ....+..+.........|+++|.||+|||||++.|..
T Consensus 4 ~~~~~~~~~~e~~~~~------~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 4 RALARAITLVENRHPE------AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHHHHHHhCCChH------HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4566777766654332 2223344444445678999999999999999999864
No 327
>KOG1532|consensus
Probab=97.82 E-value=3.8e-05 Score=72.10 Aligned_cols=25 Identities=20% Similarity=0.547 Sum_probs=21.9
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.+++.|+++|..|+||||++.+|..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHH
Confidence 3567899999999999999999973
No 328
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.80 E-value=0.00011 Score=66.53 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.3
Q ss_pred cEEEEecCCCCCHHHHHHHHh
Q psy15712 239 RTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~ 259 (358)
..|++||.+||||||.+-+|.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHH
Confidence 478999999999999999986
No 329
>KOG0083|consensus
Probab=97.79 E-value=1.4e-05 Score=67.13 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=58.1
Q ss_pred EecCCCCCHHHHHHHHhCCCCcccCC-CcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 243 ICGFPNVGKSSFLNKITRADVDVQPY-AFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 243 lvG~~nvGKSSLin~L~~~~~~v~~~-~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
++|.+++|||+|+-+.....+..++. .....+.....++.++. ++|+|||+|... +...+..+++.. |
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqer--------frsvt~ayyrda-~ 72 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQER--------FRSVTHAYYRDA-D 72 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHH--------HhhhhHhhhccc-c
Confidence 68999999999987665443332222 11222333334444554 679999999942 333344555665 9
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHcc
Q psy15712 320 AVLYFIDISEQCGHSIQEQIGLFKSIRP 347 (358)
Q Consensus 320 ~iL~VvD~s~~~~~~~~~q~~ll~~i~~ 347 (358)
++|+++|+.+..++ +.-..|+.+|++
T Consensus 73 allllydiankasf--dn~~~wlsei~e 98 (192)
T KOG0083|consen 73 ALLLLYDIANKASF--DNCQAWLSEIHE 98 (192)
T ss_pred eeeeeeecccchhH--HHHHHHHHHHHH
Confidence 99999999996654 333456666543
No 330
>PRK01889 GTPase RsgA; Reviewed
Probab=97.78 E-value=3.1e-05 Score=76.47 Aligned_cols=69 Identities=26% Similarity=0.314 Sum_probs=43.3
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCC-cccCC-------CcceeeeEEEEEEecCceEEEEeC
Q psy15712 221 LEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADV-DVQPY-------AFTTKSLYVGHTDYKYLRWQVIDT 292 (358)
Q Consensus 221 l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~-------~~tT~~~~~~~~~~~~~~~~liDT 292 (358)
++.+...+. ...+++++|.+|+|||||+|.|++... .++.. .++|.......+. + ...++||
T Consensus 185 l~~L~~~L~-------~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~--~-~~~l~Dt 254 (356)
T PRK01889 185 LDVLAAWLS-------GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLP--S-GGLLIDT 254 (356)
T ss_pred HHHHHHHhh-------cCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEec--C-CCeecCC
Confidence 455555553 234899999999999999999997542 22221 2344443333332 2 2368899
Q ss_pred CCCCCCC
Q psy15712 293 PGILDHS 299 (358)
Q Consensus 293 PG~~~~~ 299 (358)
||+....
T Consensus 255 pG~~~~~ 261 (356)
T PRK01889 255 PGMRELQ 261 (356)
T ss_pred Cchhhhc
Confidence 9996543
No 331
>KOG0448|consensus
Probab=97.77 E-value=0.0004 Score=72.22 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=65.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEE-------------------------------------
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGH------------------------------------- 279 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~------------------------------------- 279 (358)
...+|++.|.+++||||++|++...++..++..+||--....+
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 4568999999999999999999977665555444443221110
Q ss_pred ------EEec-------CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHc
Q psy15712 280 ------TDYK-------YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIR 346 (358)
Q Consensus 280 ------~~~~-------~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~ 346 (358)
+.|+ ...+.++|.||+.-.+... .++.....-+|+++||+.+-+.... ...+.|....
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~t------swid~~cldaDVfVlV~NaEntlt~---sek~Ff~~vs 258 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELT------SWIDSFCLDADVFVLVVNAENTLTL---SEKQFFHKVS 258 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhh------HHHHHHhhcCCeEEEEecCccHhHH---HHHHHHHHhh
Confidence 0111 1257899999996543222 1222222334999999988765433 2344555554
Q ss_pred ccCCCCeEEE
Q psy15712 347 PLFNNKVGPL 356 (358)
Q Consensus 347 ~~f~~kPvil 356 (358)
.. ||-|.
T Consensus 259 ~~---KpniF 265 (749)
T KOG0448|consen 259 EE---KPNIF 265 (749)
T ss_pred cc---CCcEE
Confidence 43 55443
No 332
>KOG1707|consensus
Probab=97.76 E-value=0.00012 Score=74.94 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=68.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc--ccC-CCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD--VQP-YAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~--v~~-~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
...+|+++|..||||||||-+|.+.... +-+ .|-.|.- ..+.-......++||..-.+ +++. ....
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~~----~~~~----l~~E 76 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDSD----DRLC----LRKE 76 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccCcCcCceEEEecccccc----hhHH----HHHH
Confidence 4678999999999999999999987632 222 1112211 11112233568999984322 1221 1233
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC---CCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF---NNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f---~~kPvilv 357 (358)
++.. |++..|+..+++.... .-+..|+-.+++.+ .+.|+|+|
T Consensus 77 irkA-~vi~lvyavd~~~T~D-~ist~WLPlir~~~~~~~~~PVILv 121 (625)
T KOG1707|consen 77 IRKA-DVICLVYAVDDESTVD-RISTKWLPLIRQLFGDYHETPVILV 121 (625)
T ss_pred Hhhc-CEEEEEEecCChHHhh-hhhhhhhhhhhcccCCCccCCEEEE
Confidence 4444 9999999888754431 22567887777776 78999987
No 333
>KOG0081|consensus
Probab=97.76 E-value=2.4e-05 Score=67.59 Aligned_cols=95 Identities=18% Similarity=0.215 Sum_probs=55.2
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec---------C--ceEEEEeCCCCCCCCcchHHHHHHH
Q psy15712 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK---------Y--LRWQVIDTPGILDHSLEDRNIIEMQ 309 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~---------~--~~~~liDTPG~~~~~~~~~~~ie~~ 309 (358)
.+..|.+||||||++...+..++...-..+...+.....+.++ + ..+|+|||+|.. .+..+
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE--------RFRSL 83 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE--------RFRSL 83 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHH--------HHHHH
Confidence 3456999999999999888666543222222222222222221 1 256999999993 23333
Q ss_pred HHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHc
Q psy15712 310 AVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIR 346 (358)
Q Consensus 310 ~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~ 346 (358)
+-...+.. -++|+++|++++- +......|+..++
T Consensus 84 TTAFfRDA-MGFlLiFDlT~eq--SFLnvrnWlSQL~ 117 (219)
T KOG0081|consen 84 TTAFFRDA-MGFLLIFDLTSEQ--SFLNVRNWLSQLQ 117 (219)
T ss_pred HHHHHHhh-ccceEEEeccchH--HHHHHHHHHHHHH
Confidence 33333443 6799999998843 2333444555543
No 334
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.76 E-value=0.0014 Score=67.01 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...++++|.+||||||++.+|++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 46899999999999999999984
No 335
>KOG1954|consensus
Probab=97.75 E-value=0.00018 Score=70.02 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=63.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC---cccCCCcceeeeEEEEEEe-----------c-------------------
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV---DVQPYAFTTKSLYVGHTDY-----------K------------------- 283 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~---~v~~~~~tT~~~~~~~~~~-----------~------------------- 283 (358)
..|-|+++|.-..||||+||-|+..++ .+++.|+|..-..+-+..- +
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 467899999999999999999998774 3666664443332211110 0
Q ss_pred ---------CceEEEEeCCCCCCCCcc--hHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc
Q psy15712 284 ---------YLRWQVIDTPGILDHSLE--DRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL 348 (358)
Q Consensus 284 ---------~~~~~liDTPG~~~~~~~--~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~ 348 (358)
-.++.++||||++..... .+..=.--...-..+-.|.|++++|+..-. .+. +.-+.+..++..
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD-Isd-Ef~~vi~aLkG~ 210 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD-ISD-EFKRVIDALKGH 210 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc-ccH-HHHHHHHHhhCC
Confidence 136789999999875322 111000011122233349999999986522 112 234455555543
No 336
>KOG3883|consensus
Probab=97.73 E-value=0.00039 Score=59.93 Aligned_cols=87 Identities=17% Similarity=0.266 Sum_probs=58.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh-CCCCcccCCCcceeeeEEEEEEecC---ceEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT-RADVDVQPYAFTTKSLYVGHTDYKY---LRWQVIDTPGILDHSLEDRNIIEMQAVT 312 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~-~~~~~v~~~~~tT~~~~~~~~~~~~---~~~~liDTPG~~~~~~~~~~~ie~~~~~ 312 (358)
...+|+++|.-+||||+++..|. |..+.-.++-.|--++....++-+. ..+.+.||.|+...+.+. ..
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eL--------pr 79 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQEL--------PR 79 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhh--------hH
Confidence 35689999999999999999987 4444333333444556666654432 367899999997653221 12
Q ss_pred HHhhcccEEEEEEeCCCCC
Q psy15712 313 ALAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~ 331 (358)
.+-..+|+.++|++..++.
T Consensus 80 hy~q~aDafVLVYs~~d~e 98 (198)
T KOG3883|consen 80 HYFQFADAFVLVYSPMDPE 98 (198)
T ss_pred hHhccCceEEEEecCCCHH
Confidence 3334469999999977644
No 337
>PRK10867 signal recognition particle protein; Provisional
Probab=97.73 E-value=0.00034 Score=70.67 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=19.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
....|+++|.+|+||||+...|.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 35688999999999999877765
No 338
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.0023 Score=63.90 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
....|+++|.+||||||++..|.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999886
No 339
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.66 E-value=0.00032 Score=70.16 Aligned_cols=107 Identities=23% Similarity=0.222 Sum_probs=70.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc------cc----------CCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD------VQ----------PYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE 301 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~------v~----------~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 301 (358)
...|+++-.---|||||+..|...... ++ ..-+.|.-...-.+.|++.++.++||||..+...+
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 457999999999999999999854311 11 11255554444566789999999999999887643
Q ss_pred hHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 302 DRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 302 ~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.|+ .+.-. |++|+++|+++.+.-... +-+-+.+.. .-+|+++|
T Consensus 85 ----VER----vl~MV-DgvlLlVDA~EGpMPQTr--FVlkKAl~~--gL~PIVVv 127 (603)
T COG1217 85 ----VER----VLSMV-DGVLLLVDASEGPMPQTR--FVLKKALAL--GLKPIVVI 127 (603)
T ss_pred ----hhh----hhhhc-ceEEEEEEcccCCCCchh--hhHHHHHHc--CCCcEEEE
Confidence 332 23334 999999999996654332 222233322 24777765
No 340
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.64 E-value=0.00032 Score=71.01 Aligned_cols=102 Identities=21% Similarity=0.323 Sum_probs=55.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC------CCCc-ccCCCcce------------eee-EEEEE--------------Ee
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR------ADVD-VQPYAFTT------------KSL-YVGHT--------------DY 282 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~------~~~~-v~~~~~tT------------~~~-~~~~~--------------~~ 282 (358)
.+..|+++|.+|+||||++..|.. .++. +..-.+.. .+. ..+.. ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 456899999999999999988862 2221 11100000 000 01000 00
Q ss_pred cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHH
Q psy15712 283 KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFK 343 (358)
Q Consensus 283 ~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~ 343 (358)
....+.|+||||.........+++. ....+. .+|.+++|+|++. +....++.+.|.
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~--~l~~~~-~pdevlLVvda~~--gq~av~~a~~F~ 229 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMK--EIKEAV-KPDEVLLVIDATI--GQQAKNQAKAFH 229 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHH--HHHHHh-cccceeEEEeccc--cHHHHHHHHHHH
Confidence 1347899999999765333333222 222222 2488999999876 443334444443
No 341
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.64 E-value=0.00031 Score=68.62 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.2
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHh
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
.+...|++.|.||+|||||++.|.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999999999875
No 342
>KOG0781|consensus
Probab=97.64 E-value=0.00025 Score=71.08 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHh----CC--CCcccCCCcceee-----------e----
Q psy15712 217 NLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKIT----RA--DVDVQPYAFTTKS-----------L---- 275 (358)
Q Consensus 217 ~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~----~~--~~~v~~~~~tT~~-----------~---- 275 (358)
..+.|+.+....++ .++.+|++||..||||||-+.+++ .- ++.++...+...+ .
T Consensus 362 sVDlLRdI~sar~~-----krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~ 436 (587)
T KOG0781|consen 362 SVDLLRDIMSARRR-----KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALH 436 (587)
T ss_pred hhhHHHHHHHHHhc-----CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhc
Confidence 44556665544332 257899999999999999999986 21 2223222211110 0
Q ss_pred --EEEEEE-------------------ecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCC
Q psy15712 276 --YVGHTD-------------------YKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHS 334 (358)
Q Consensus 276 --~~~~~~-------------------~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~ 334 (358)
.+..+. -.|..+.+|||+|-.......+..+.+.. -.+-+|.||||-.+.- |..
T Consensus 437 ~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~---~~~~pd~i~~vgealv--g~d 511 (587)
T KOG0781|consen 437 GTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLI---KVNKPDLILFVGEALV--GND 511 (587)
T ss_pred cchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHH---hcCCCceEEEehhhhh--CcH
Confidence 000000 12678999999999876655554443321 1234699999977643 555
Q ss_pred HHHHHHHHHH
Q psy15712 335 IQEQIGLFKS 344 (358)
Q Consensus 335 ~~~q~~ll~~ 344 (358)
.-+|+.-|+.
T Consensus 512 sv~q~~~fn~ 521 (587)
T KOG0781|consen 512 SVDQLKKFNR 521 (587)
T ss_pred HHHHHHHHHH
Confidence 5566666654
No 343
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.0045 Score=62.22 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=20.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...++++|.+||||||++..|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999873
No 344
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.0009 Score=66.35 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....++++|.|||||||++.+|..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 345
>KOG0780|consensus
Probab=97.59 E-value=0.00088 Score=65.78 Aligned_cols=105 Identities=19% Similarity=0.243 Sum_probs=64.5
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHh------CCCCc-ccCC-------------CcceeeeEEEEEEe-------------
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKIT------RADVD-VQPY-------------AFTTKSLYVGHTDY------------- 282 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~------~~~~~-v~~~-------------~~tT~~~~~~~~~~------------- 282 (358)
.++-.|.+||.-|+||||.+.+|. |.++. ++.- ..-++-+.++..+.
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 455689999999999999999886 22211 1110 01122223333211
Q ss_pred ---cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHH
Q psy15712 283 ---KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSI 345 (358)
Q Consensus 283 ---~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i 345 (358)
++..+.|+||.|-.....+..+++ ..+ .=.-.||.+|||+|+|- |+..+.|...|++-
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM--~~v-~~ai~Pd~vi~VmDasi--GQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEM--KQV-SKAIKPDEIIFVMDASI--GQAAEAQARAFKET 239 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHH--HHH-HhhcCCCeEEEEEeccc--cHhHHHHHHHHHHh
Confidence 256789999999865433322221 111 11122799999999987 88888899888864
No 346
>KOG0462|consensus
Probab=97.57 E-value=0.00025 Score=72.19 Aligned_cols=98 Identities=24% Similarity=0.277 Sum_probs=66.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC---------------CcccCCCcceeeeEEEEEEecC---ceEEEEeCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD---------------VDVQPYAFTTKSLYVGHTDYKY---LRWQVIDTPGILDH 298 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~---------------~~v~~~~~tT~~~~~~~~~~~~---~~~~liDTPG~~~~ 298 (358)
+-+++++|-.--=|||||..+|.... ..+...-+.|...+...+.|.+ .-+.+|||||..|.
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 34578888888999999999986321 1233445778777777777766 67789999999988
Q ss_pred CcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHH
Q psy15712 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSI 345 (358)
Q Consensus 299 ~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i 345 (358)
..+- + ..+... +++|+|+|+++ |-..+....++..+
T Consensus 139 s~EV----s----Rslaac-~G~lLvVDA~q--GvqAQT~anf~lAf 174 (650)
T KOG0462|consen 139 SGEV----S----RSLAAC-DGALLVVDASQ--GVQAQTVANFYLAF 174 (650)
T ss_pred ccee----h----ehhhhc-CceEEEEEcCc--CchHHHHHHHHHHH
Confidence 6432 1 123334 89999999998 44344434444443
No 347
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.55 E-value=0.00039 Score=76.89 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=57.7
Q ss_pred CCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC------------------ceEEEEeCCCCCCCCcchHHHHHHHH
Q psy15712 249 VGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY------------------LRWQVIDTPGILDHSLEDRNIIEMQA 310 (358)
Q Consensus 249 vGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~------------------~~~~liDTPG~~~~~~~~~~~ie~~~ 310 (358)
++||||+-+|.+.++.-...-+.|.++-...+.++. ..+.+|||||... +....
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~--------F~~lr 543 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA--------FTSLR 543 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH--------HHHHH
Confidence 469999999999887655555667665444444331 1389999999522 11111
Q ss_pred HHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 311 VTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 311 ~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.... ..+|++++|+|+++.......+.+. .+... ++|++++
T Consensus 544 ~~g~-~~aDivlLVVDa~~Gi~~qT~e~I~---~lk~~--~iPiIVV 584 (1049)
T PRK14845 544 KRGG-SLADLAVLVVDINEGFKPQTIEAIN---ILRQY--KTPFVVA 584 (1049)
T ss_pred Hhhc-ccCCEEEEEEECcccCCHhHHHHHH---HHHHc--CCCEEEE
Confidence 1222 3359999999998754332333333 33332 6788876
No 348
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.54 E-value=0.0085 Score=60.61 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~ 259 (358)
...++++|.+||||||++..|.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999988875
No 349
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.52 E-value=0.0019 Score=65.24 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=31.5
Q ss_pred CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHH
Q psy15712 284 YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFK 343 (358)
Q Consensus 284 ~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~ 343 (358)
+..+.|+||||...........+... .... .++.+++|+|++. +....++...|.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i--~~~~-~p~e~lLVvda~t--gq~~~~~a~~f~ 236 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAI--KEIL-NPDEILLVVDAMT--GQDAVNTAKTFN 236 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHH--HHhh-CCceEEEEEeccc--hHHHHHHHHHHH
Confidence 45789999999875432222222221 1111 2578999999864 444444555444
No 350
>KOG1145|consensus
Probab=97.51 E-value=0.00073 Score=68.86 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=73.8
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe-cCceEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy15712 234 IDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY-KYLRWQVIDTPGILDHSLEDRNIIEMQAVT 312 (358)
Q Consensus 234 ~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~ie~~~~~ 312 (358)
..+++|.|-++|.--=|||||+.+|-+..+..+..-+.|.++-...+.. .|.++.+.||||.... ..|+++
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF-------~aMRaR- 220 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAF-------SAMRAR- 220 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHH-------HHHHhc-
Confidence 4567899999999999999999999998876656566676553333322 5789999999998421 112221
Q ss_pred HHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 313 ALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
-....|.+++|+-+.+...... .+.++-.+. ++.|+|+.
T Consensus 221 -GA~vtDIvVLVVAadDGVmpQT---~EaIkhAk~--A~VpiVvA 259 (683)
T KOG1145|consen 221 -GANVTDIVVLVVAADDGVMPQT---LEAIKHAKS--ANVPIVVA 259 (683)
T ss_pred -cCccccEEEEEEEccCCccHhH---HHHHHHHHh--cCCCEEEE
Confidence 1234588999998877554322 334444333 37888874
No 351
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.49 E-value=0.00016 Score=63.02 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.1
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
|.++++|+.|+|||||++.+.+.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 36789999999999999998754
No 352
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.49 E-value=0.00047 Score=68.37 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...|++||+|||||||.+.+|...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 678999999999999999999743
No 353
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.0019 Score=65.01 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
....++++|.+|+||||+++.|.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998753
No 354
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0097 Score=59.14 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
+...++++|.+||||||++..|.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45688999999999999999987
No 355
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.40 E-value=0.00026 Score=66.41 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.3
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHh
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
.+..+|++.|.||+|||||+++|.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHH
Confidence 357899999999999999999996
No 356
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00064 Score=64.81 Aligned_cols=56 Identities=27% Similarity=0.374 Sum_probs=34.2
Q ss_pred HHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHh
Q psy15712 202 AALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 202 ~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
.++.|..+++.........+ .++.+..+.....+..+|++.|.||+|||||+.+|.
T Consensus 17 rAlARaITlvEs~~~~h~~~--a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 17 RALARAITLVESRRPDHRAL--ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred HHHHHHHHHHhcCCchhhhH--HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHH
Confidence 35556555555433322111 122223333334567799999999999999999986
No 357
>KOG1144|consensus
Probab=97.33 E-value=0.00086 Score=70.33 Aligned_cols=108 Identities=19% Similarity=0.124 Sum_probs=72.1
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec------------------CceEEEEeCCCCCC
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK------------------YLRWQVIDTPGILD 297 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~------------------~~~~~liDTPG~~~ 297 (358)
-+.|.++++|.-.+|||-|+..|.+.++.-+.+.+.|..+-...+... --.+.+|||||.-.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 357899999999999999999999998877777776765433333221 22578999999532
Q ss_pred CCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 298 HSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 298 ~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.. . .++.-..+.|.+|+|+|+.+...... ++.++-++.. +.|+|+.
T Consensus 553 Ft-------n--lRsrgsslC~~aIlvvdImhGlepqt---iESi~lLR~r--ktpFivA 598 (1064)
T KOG1144|consen 553 FT-------N--LRSRGSSLCDLAILVVDIMHGLEPQT---IESINLLRMR--KTPFIVA 598 (1064)
T ss_pred hh-------h--hhhccccccceEEEEeehhccCCcch---hHHHHHHHhc--CCCeEEe
Confidence 11 0 12223345688999999998654333 3444444443 6788875
No 358
>KOG3886|consensus
Probab=97.31 E-value=0.00016 Score=66.40 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=59.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecC-ceEEEEeCCCCCCCCcchHHHHHHHH----H
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKY-LRWQVIDTPGILDHSLEDRNIIEMQA----V 311 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~ie~~~----~ 311 (358)
..+|+++|.+|+||||+=..++.... .-...++.|.++..+|..+-| .-+.+||+.|.- ..+|-+. -
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe-------~fmen~~~~q~d 76 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE-------EFMENYLSSQED 76 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH-------HHHHHHHhhcch
Confidence 35799999999999998666653221 123456779999999887766 466899999983 2233221 1
Q ss_pred HHHhhcccEEEEEEeCCCC
Q psy15712 312 TALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~ 330 (358)
..+++. ++++||+|++..
T Consensus 77 ~iF~nV-~vli~vFDves~ 94 (295)
T KOG3886|consen 77 NIFRNV-QVLIYVFDVESR 94 (295)
T ss_pred hhheeh-eeeeeeeeccch
Confidence 233444 899999999874
No 359
>KOG0096|consensus
Probab=97.31 E-value=0.0004 Score=61.89 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=65.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEE--EecCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHT--DYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~--~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
....++++|..|.||+|++++...+.++....+.+....+.-.+ ..+..++.+|||.|.-....- .-.+.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ggl--------rdgyy 80 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGL--------RDGYY 80 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccc--------ccccE
Confidence 35789999999999999999998877764333333332222222 122368899999998533110 00111
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEE
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPL 356 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvil 356 (358)
-+. .++++++|++....+ ...-+|...+.....|.|+++
T Consensus 81 I~~-qcAiimFdVtsr~t~--~n~~rwhrd~~rv~~NiPiv~ 119 (216)
T KOG0096|consen 81 IQG-QCAIIMFDVTSRFTY--KNVPRWHRDLVRVRENIPIVL 119 (216)
T ss_pred Eec-ceeEEEeeeeehhhh--hcchHHHHHHHHHhcCCCeee
Confidence 222 678899999985433 333344444444344677664
No 360
>KOG0468|consensus
Probab=97.29 E-value=0.0026 Score=66.16 Aligned_cols=108 Identities=16% Similarity=0.147 Sum_probs=64.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cc-----c--CCC---------cceeeeEEEEEE---ecCc--eEEEEeCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DV-----Q--PYA---------FTTKSLYVGHTD---YKYL--RWQVIDTPG 294 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v-----~--~~~---------~tT~~~~~~~~~---~~~~--~~~liDTPG 294 (358)
....++++|.-..|||+|+..|.+... .. . .|+ +++...+...+. .+++ -++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 456899999999999999999986432 11 1 111 112111111111 1233 458999999
Q ss_pred CCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 295 ILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 295 ~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
..+... -+..+++.. |++++|+|+.+....+.+. +++..-+. +.|+++|+
T Consensus 207 HVnF~D--------E~ta~l~~s-DgvVlvvDv~EGVmlntEr---~ikhaiq~--~~~i~vvi 256 (971)
T KOG0468|consen 207 HVNFSD--------ETTASLRLS-DGVVLVVDVAEGVMLNTER---IIKHAIQN--RLPIVVVI 256 (971)
T ss_pred cccchH--------HHHHHhhhc-ceEEEEEEcccCceeeHHH---HHHHHHhc--cCcEEEEE
Confidence 986431 123345555 9999999999977665554 33322222 57777764
No 361
>KOG1673|consensus
Probab=97.27 E-value=0.00042 Score=59.88 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=66.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
...|+++|.+.+|||||+-+..+.............++....+...| ..+-+||.-|..+. +.+ ...++.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~-------~n~-lPiac~ 91 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREF-------INM-LPIACK 91 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhh-------hcc-Cceeec
Confidence 45799999999999999999988765322222222333344444444 36789999998421 111 111222
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEE
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPL 356 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvil 356 (358)
.. -+|||++|.+.+|. +....+|+..-+..- ...|+++
T Consensus 92 ds-vaIlFmFDLt~r~T--LnSi~~WY~QAr~~NktAiPilv 130 (205)
T KOG1673|consen 92 DS-VAILFMFDLTRRST--LNSIKEWYRQARGLNKTAIPILV 130 (205)
T ss_pred Cc-EEEEEEEecCchHH--HHHHHHHHHHHhccCCccceEEe
Confidence 22 57999999999775 445667877766541 1356553
No 362
>PTZ00099 rab6; Provisional
Probab=97.25 E-value=0.0021 Score=56.94 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=43.1
Q ss_pred eeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-C
Q psy15712 274 SLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-N 350 (358)
Q Consensus 274 ~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~ 350 (358)
+.....+.+++ ..+++|||||.... ......+++.. |++|+|+|++++.++ +....++..+.... .
T Consensus 16 ~~~~~~~~~~~~~v~l~iwDt~G~e~~--------~~~~~~~~~~a-d~~ilv~D~t~~~sf--~~~~~w~~~i~~~~~~ 84 (176)
T PTZ00099 16 DFLSKTLYLDEGPVRLQLWDTAGQERF--------RSLIPSYIRDS-AAAIVVYDITNRQSF--ENTTKWIQDILNERGK 84 (176)
T ss_pred EEEEEEEEECCEEEEEEEEECCChHHh--------hhccHHHhCCC-cEEEEEEECCCHHHH--HHHHHHHHHHHHhcCC
Confidence 33333444444 46789999998432 11223345554 999999999985443 33345666554322 3
Q ss_pred CCeEEEe
Q psy15712 351 NKVGPLE 357 (358)
Q Consensus 351 ~kPvilv 357 (358)
+.|+++|
T Consensus 85 ~~piilV 91 (176)
T PTZ00099 85 DVIIALV 91 (176)
T ss_pred CCeEEEE
Confidence 5777765
No 363
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.21 E-value=0.0072 Score=60.44 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=61.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh------CCCCc-ccC-------------------CCccee----eeEE------EEE
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT------RADVD-VQP-------------------YAFTTK----SLYV------GHT 280 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~------~~~~~-v~~-------------------~~~tT~----~~~~------~~~ 280 (358)
.+.+|.+||.-|+||||...+|. +.++. ++. .||... ++.. ...
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 35578999999999999999886 22221 110 011110 0000 000
Q ss_pred EecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHH
Q psy15712 281 DYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSI 345 (358)
Q Consensus 281 ~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i 345 (358)
...+..+.|+||+|-+.-....++++.. +.... -||=+|+|+|+.. |+....+.+.|++-
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~--Ik~~~-~P~E~llVvDam~--GQdA~~~A~aF~e~ 238 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKE--IKEVI-NPDETLLVVDAMI--GQDAVNTAKAFNEA 238 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHH--HHhhc-CCCeEEEEEeccc--chHHHHHHHHHhhh
Confidence 0124589999999997654344443322 22211 2588999999987 77676777777764
No 364
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.15 E-value=0.00053 Score=63.97 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=15.3
Q ss_pred EecCCCCCHHHHHHHHh
Q psy15712 243 ICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 243 lvG~~nvGKSSLin~L~ 259 (358)
|+|.+|+||||+++++.
T Consensus 1 ViGpaGSGKTT~~~~~~ 17 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLS 17 (238)
T ss_dssp -EESTTSSHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 68999999999999997
No 365
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.13 E-value=0.00055 Score=57.18 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=47.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLR 318 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~ 318 (358)
.++++||..|+|||||+|+|-|....... |.. ++|.+ =..|||||-.-... .-. .++.+...-+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK----TQA-----ve~~d--~~~IDTPGEy~~~~---~~Y--~aL~tt~~da 65 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK----TQA-----VEFND--KGDIDTPGEYFEHP---RWY--HALITTLQDA 65 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc----cce-----eeccC--ccccCCchhhhhhh---HHH--HHHHHHhhcc
Confidence 37999999999999999999997643211 221 22221 13699999753211 101 1223333334
Q ss_pred cEEEEEEeCCCC
Q psy15712 319 AAVLYFIDISEQ 330 (358)
Q Consensus 319 d~iL~VvD~s~~ 330 (358)
|++++|-.++++
T Consensus 66 dvi~~v~~and~ 77 (148)
T COG4917 66 DVIIYVHAANDP 77 (148)
T ss_pred ceeeeeecccCc
Confidence 889999888875
No 366
>KOG0458|consensus
Probab=97.11 E-value=0.0015 Score=66.96 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=58.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh---CC----------------------------CCcccCCCcceeeeEEEEEEecCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT---RA----------------------------DVDVQPYAFTTKSLYVGHTDYKYL 285 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~---~~----------------------------~~~v~~~~~tT~~~~~~~~~~~~~ 285 (358)
....++++|..++|||||+..|. |. +.......+.|.+.-..+++-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 45678999999999999999986 10 001122347777777777777777
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 286 RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 286 ~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
.+.|+|+||.-+.-. | ++.-... +|+.++|+|++.
T Consensus 256 ~~tliDaPGhkdFi~---n-----mi~g~sq-aD~avLvvd~s~ 290 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIP---N-----MISGASQ-ADVAVLVVDAST 290 (603)
T ss_pred eEEEecCCCccccch---h-----hhccccc-cceEEEEEECCc
Confidence 899999999655422 1 1122222 489999999998
No 367
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.0071 Score=52.93 Aligned_cols=110 Identities=21% Similarity=0.198 Sum_probs=60.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC---C-CcccCCCcceeeeEEEEEEecCc--eEEEEeCC-C---CCC-----CC--
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA---D-VDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTP-G---ILD-----HS-- 299 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~---~-~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTP-G---~~~-----~~-- 299 (358)
...+|++.|.|||||||++.++... + +.++. |-|..+.. +|. .|.++|+. | ++. .+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~-----gGkR~GF~Ivdl~tg~~~~la~~~~~~~rv 76 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVRE-----GGKRIGFKIVDLATGEEGILARVGFSRPRV 76 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeec-----CCeEeeeEEEEccCCceEEEEEcCCCCccc
Confidence 3568999999999999999988731 1 33333 22333322 222 34555555 1 111 11
Q ss_pred ---cchHHHHHHHHHHHHhhc---ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 300 ---LEDRNIIEMQAVTALAHL---RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 300 ---~~~~~~ie~~~~~~l~~~---~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.-+-..++..+..+++.+ +|+ .++|=-.+.........+.+.++... ++|+|.+
T Consensus 77 GkY~V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElks~~f~~~ve~vl~~--~kpliat 136 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRALEEADV--IIIDEIGPMELKSKKFREAVEEVLKS--GKPLIAT 136 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhccHHHHHHHHHHhcC--CCcEEEE
Confidence 112234555555555532 355 56786666555555556666666543 7887765
No 368
>KOG0447|consensus
Probab=97.05 E-value=0.045 Score=56.15 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=58.3
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCC--------------------------------------------
Q psy15712 234 IDPFTRTIIICGFPNVGKSSFLNKITRADVD-VQPY-------------------------------------------- 268 (358)
Q Consensus 234 ~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~-------------------------------------------- 268 (358)
...+.|+|++||.-.+||||.+..+..++.. -++.
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 4467789999999999999999999865421 1111
Q ss_pred ---------CcceeeeEEEEEEecC---ceEEEEeCCCCCCCCc-----chHHHHHHHHHHHHhhcccEEEEEE
Q psy15712 269 ---------AFTTKSLYVGHTDYKY---LRWQVIDTPGILDHSL-----EDRNIIEMQAVTALAHLRAAVLYFI 325 (358)
Q Consensus 269 ---------~~tT~~~~~~~~~~~~---~~~~liDTPG~~~~~~-----~~~~~ie~~~~~~l~~~~d~iL~Vv 325 (358)
.++|.+..+..+.+.| .++.++|.||++..-. +-.+.+..++..++.+- ++||+++
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NP-NAIILCI 456 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNP-NAIILCI 456 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCC-CeEEEEe
Confidence 1334433333333333 3778999999986522 23345656666666554 7777666
No 369
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.019 Score=59.41 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+|+|.+|+||||++.+|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999874
No 370
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=97.00 E-value=0.0025 Score=60.24 Aligned_cols=65 Identities=25% Similarity=0.287 Sum_probs=44.5
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHhCCC--CcccC-CCcceeeeEEEEEEe---cCceEEEEeCCCCCCC
Q psy15712 234 IDPFTRTIIICGFPNVGKSSFLNKITRAD--VDVQP-YAFTTKSLYVGHTDY---KYLRWQVIDTPGILDH 298 (358)
Q Consensus 234 ~~~~~~~I~lvG~~nvGKSSLin~L~~~~--~~v~~-~~~tT~~~~~~~~~~---~~~~~~liDTPG~~~~ 298 (358)
.+.+-..|+|+|...+|||.|+|.|.+.. +.+++ ...+|.++-...... ....+.++||.|+.+.
T Consensus 17 ~~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 17 IDQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp TTSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred CCCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 33345688999999999999999999754 23444 235666655443322 2347899999999883
No 371
>KOG2749|consensus
Probab=96.95 E-value=0.0029 Score=61.59 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=27.8
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 220 YLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 220 ~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|++.|....+ .+...|++++||.+++|||||...|++
T Consensus 88 ale~~R~~~e~---~~~~GPrv~vVGp~d~GKsTl~r~L~n 125 (415)
T KOG2749|consen 88 ALEKRRMQAEE---ESSYGPRVMVVGPTDVGKSTLCRILLN 125 (415)
T ss_pred HHHHHhhhhhh---hhccCCEEEEECCCccchHHHHHHHHH
Confidence 34444443332 334678999999999999999999974
No 372
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.94 E-value=0.0058 Score=46.99 Aligned_cols=73 Identities=22% Similarity=0.182 Sum_probs=45.1
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccE
Q psy15712 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAA 320 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~ 320 (358)
+++.|.+|+||||+.+.|...-.. ..+ .+..++ .+.++|+||........ ....+. .+|.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~-------~v~~~~----d~iivD~~~~~~~~~~~-------~~~~~~-~~~~ 61 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGK-------RVLLID----DYVLIDTPPGLGLLVLL-------CLLALL-AADL 61 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCC-------eEEEEC----CEEEEeCCCCccchhhh-------hhhhhh-hCCE
Confidence 678899999999999988743211 011 111111 78999999997643110 112222 3488
Q ss_pred EEEEEeCCCCCCC
Q psy15712 321 VLYFIDISEQCGH 333 (358)
Q Consensus 321 iL~VvD~s~~~~~ 333 (358)
++++++.+..+..
T Consensus 62 vi~v~~~~~~~~~ 74 (99)
T cd01983 62 VIIVTTPEALAVL 74 (99)
T ss_pred EEEecCCchhhHH
Confidence 9999987765543
No 373
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0068 Score=57.79 Aligned_cols=108 Identities=14% Similarity=0.115 Sum_probs=66.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC-------C---C-cccCC-----CcceeeeEEEEEEecCceEEEEeCCCCCCCCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA-------D---V-DVQPY-----AFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~-------~---~-~v~~~-----~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~ 300 (358)
...+|+.+|.-+-|||||..+|+.. . . .+... -+.|.+.....+......+--+|+||..|
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD--- 87 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD--- 87 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH---
Confidence 4568999999999999999999841 1 0 01111 26666665555566678899999999853
Q ss_pred chHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 301 ~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
+-+..+....+. |..|+|+.+++...-...+.+-+-.. -+.|-|+||
T Consensus 88 -----YvKNMItgAaqm-DgAILVVsA~dGpmPqTrEHiLlarq-----vGvp~ivvf 134 (394)
T COG0050 88 -----YVKNMITGAAQM-DGAILVVAATDGPMPQTREHILLARQ-----VGVPYIVVF 134 (394)
T ss_pred -----HHHHHhhhHHhc-CccEEEEEcCCCCCCcchhhhhhhhh-----cCCcEEEEE
Confidence 112222333334 77777777777433333333322222 267888876
No 374
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.91 E-value=0.0054 Score=69.52 Aligned_cols=114 Identities=15% Similarity=0.047 Sum_probs=63.3
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCC--------CcceeeeEEEEEEecCceEEEEeCCCCCCCCc----chHHHH
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPY--------AFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL----EDRNII 306 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~--------~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~----~~~~~i 306 (358)
|=.+++|.+|+||||+++.- |-++..... .+.|+++... =..+..++||+|..-... .+...+
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww----f~~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW----FTDEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE----ecCCEEEEcCCCccccCCCcccccHHHH
Confidence 45789999999999999976 444322210 1123322221 124668999999654322 223334
Q ss_pred HHHHHHHHhhc-----ccEEEEEEeCCCCCCCCHHHHH-------HHHHHHcccC-CCCeEEEeC
Q psy15712 307 EMQAVTALAHL-----RAAVLYFIDISEQCGHSIQEQI-------GLFKSIRPLF-NNKVGPLEY 358 (358)
Q Consensus 307 e~~~~~~l~~~-----~d~iL~VvD~s~~~~~~~~~q~-------~ll~~i~~~f-~~kPvilvf 358 (358)
... ...|+.. -++||+++|+++-...+.++.. .-+.++...+ ..-||.+||
T Consensus 187 ~~f-L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~ 250 (1169)
T TIGR03348 187 LGF-LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVL 250 (1169)
T ss_pred HHH-HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 332 2233211 2899999999875544333211 1233444332 368988875
No 375
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.83 E-value=0.015 Score=50.92 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=17.3
Q ss_pred EEEEecCCCCCHHHHHHHHh
Q psy15712 240 TIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~ 259 (358)
.++++|.||+||||+...+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999977765
No 376
>KOG0464|consensus
Probab=96.78 E-value=0.0024 Score=63.17 Aligned_cols=84 Identities=32% Similarity=0.356 Sum_probs=61.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHh---CC-----CCc----------ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT---RA-----DVD----------VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~---~~-----~~~----------v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~ 299 (358)
...|+++..-.+||||...++. |. ++. ....-+.|.......++|.|.++.+|||||..+..
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 3478999999999999988875 22 111 11223566666667789999999999999998875
Q ss_pred cchHHHHHHHHHHHHhhcccEEEEEEeCCCC
Q psy15712 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 300 ~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~ 330 (358)
.+ +|+ .++-+ |+++.|+|+|..
T Consensus 117 le----ver----clrvl-dgavav~dasag 138 (753)
T KOG0464|consen 117 LE----VER----CLRVL-DGAVAVFDASAG 138 (753)
T ss_pred EE----HHH----HHHHh-cCeEEEEeccCC
Confidence 43 232 44555 999999999874
No 377
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.73 E-value=0.0016 Score=58.41 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=32.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEE
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVG 278 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~ 278 (358)
....|+++|.+|+|||||++.|...... ....+.||+.+..+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~g 45 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPG 45 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCC
Confidence 3567999999999999999999876532 34457888876554
No 378
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.68 E-value=0.0018 Score=57.55 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
..+.++++|++|+|||||+++|...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3568999999999999999999853
No 379
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.67 E-value=0.0016 Score=56.96 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=20.3
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
+.++++|++|+|||||+++|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 380
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.66 E-value=0.0047 Score=62.21 Aligned_cols=96 Identities=24% Similarity=0.323 Sum_probs=60.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC---------------CcccCCCcceeeeEEEEEEecC-----ceEEEEeCCCCCCCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRAD---------------VDVQPYAFTTKSLYVGHTDYKY-----LRWQVIDTPGILDHS 299 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~---------------~~v~~~~~tT~~~~~~~~~~~~-----~~~~liDTPG~~~~~ 299 (358)
+.+++..---|||||-.+|.... ..+...-+.|.-.+...+.|.. ..+.+|||||..|..
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 56777777889999999987422 1123334677766666665542 356799999999876
Q ss_pred cchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHc
Q psy15712 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIR 346 (358)
Q Consensus 300 ~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~ 346 (358)
.+-. .+|... .++|+|+|+++ |-..+.....+-.+.
T Consensus 91 YEVS--------RSLAAC-EGalLvVDAsQ--GveAQTlAN~YlAle 126 (603)
T COG0481 91 YEVS--------RSLAAC-EGALLVVDASQ--GVEAQTLANVYLALE 126 (603)
T ss_pred EEeh--------hhHhhC-CCcEEEEECcc--chHHHHHHHHHHHHH
Confidence 4321 123333 67899999998 443444344444443
No 381
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.61 E-value=0.011 Score=56.09 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
+...++++|.+|+||||++..|++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 446999999999999999998864
No 382
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.58 E-value=0.0021 Score=54.64 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=35.7
Q ss_pred EEEecCCCCCHHHHHHHHhCCCC--cccCCCcceeeeEEEEEEecCceEEEEeCCCC
Q psy15712 241 IIICGFPNVGKSSFLNKITRADV--DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~ 295 (358)
|+++|.+|+|||||++.|.+... .....+.||+.+..+. .++..+.++|...+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~ 56 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEF 56 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHH
Confidence 68999999999999999997532 1234455677665443 34556666665443
No 383
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.52 E-value=0.014 Score=56.96 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=67.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC-----------------Cc----------------ccCCCcceeeeEEEEEEecC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD-----------------VD----------------VQPYAFTTKSLYVGHTDYKY 284 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~-----------------~~----------------v~~~~~tT~~~~~~~~~~~~ 284 (358)
..+.+-||.--=||||||.+|.-.. .. .....+.|.++....+.-..
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence 4578899999999999999996210 00 01234889999999888888
Q ss_pred ceEEEEeCCCCCCCCcchHHHHHHHHHHH--HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEE
Q psy15712 285 LRWQVIDTPGILDHSLEDRNIIEMQAVTA--LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGP 355 (358)
Q Consensus 285 ~~~~liDTPG~~~~~~~~~~~ie~~~~~~--l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvi 355 (358)
.++.+.||||... .++.. -...+|++++++|+.. ...+|-+-...|.....=+.++
T Consensus 86 RkFIiADTPGHeQ-----------YTRNMaTGASTadlAIlLVDAR~----Gvl~QTrRHs~I~sLLGIrhvv 143 (431)
T COG2895 86 RKFIIADTPGHEQ-----------YTRNMATGASTADLAILLVDARK----GVLEQTRRHSFIASLLGIRHVV 143 (431)
T ss_pred ceEEEecCCcHHH-----------HhhhhhcccccccEEEEEEecch----hhHHHhHHHHHHHHHhCCcEEE
Confidence 8999999999832 22222 2233589999999855 3445555444444333223333
No 384
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.0017 Score=58.05 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=32.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEE
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHT 280 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~ 280 (358)
...+++.|++||||||++++|....-.--+...||+.+..|..
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv 46 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEV 46 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCc
Confidence 4578999999999999999999776222244568887766643
No 385
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.45 E-value=0.0021 Score=56.51 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=33.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG 294 (358)
..|+++|.+|+|||||++.|.+.... ....+.+|+.+..+. ..+..+.++++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~ 56 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEE 56 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHH
Confidence 36899999999999999999985432 223344555444333 2334445555444
No 386
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.012 Score=56.77 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=22.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...+|+.||.---|||||..+|+|
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsG 32 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSG 32 (415)
T ss_pred cceEeeeeeecccchhhheehhhc
Confidence 467899999999999999999997
No 387
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.025 Score=56.62 Aligned_cols=97 Identities=20% Similarity=0.135 Sum_probs=68.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCc---ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVD---VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~---v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.|+-+|.---|||||+.+++|.... -...-++|.+........++..+.++|+||.-+. +. .....+ .
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~-------i~-~miag~-~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF-------IS-NLLAGL-G 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH-------HH-HHHhhh-c
Confidence 5778888899999999999987643 3345689999988888888889999999999431 11 111222 2
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHH
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSI 345 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i 345 (358)
..|.+++|+|+.+.......+.+..+..+
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~iLdll 101 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLLILDLL 101 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHHHHHHhc
Confidence 34899999999775544444445555543
No 388
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.35 E-value=0.07 Score=51.33 Aligned_cols=108 Identities=16% Similarity=0.112 Sum_probs=63.2
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCC----------------CC
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILD----------------HS 299 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~----------------~~ 299 (358)
.+.+.+++||.+|.|||++++++...++...+.. .+ ...+..+.+|.--+ ++
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~~-----------~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~ 126 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-AE-----------RIPVVYVQMPPEPDERRFYSAILEALGAPYRP 126 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-Cc-----------cccEEEEecCCCCChHHHHHHHHHHhCcccCC
Confidence 3567899999999999999999998775432211 00 12556666665322 12
Q ss_pred cchHHHHHHHHHHHHhhcccEEEEEEeCCCCC-CCCHHHHH---HHHHHHcccCCCCeEEEe
Q psy15712 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISEQC-GHSIQEQI---GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 300 ~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~-~~~~~~q~---~ll~~i~~~f~~kPvilv 357 (358)
.......+.+....++.. .+=++|+|=-+.+ .-+..+|- .+++.+.+.+ +.|+|.+
T Consensus 127 ~~~~~~~~~~~~~llr~~-~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL-~ipiV~v 186 (302)
T PF05621_consen 127 RDRVAKLEQQVLRLLRRL-GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL-QIPIVGV 186 (302)
T ss_pred CCCHHHHHHHHHHHHHHc-CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc-CCCeEEe
Confidence 222233444555666666 6667888866652 22333344 4455554443 5677654
No 389
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.28 E-value=0.004 Score=56.64 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=27.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceee
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKS 274 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~ 274 (358)
....|+|+|.+|+|||||++.|...... ....+.||+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~ 50 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRP 50 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCC
Confidence 4567889999999999999999754322 2344456654
No 390
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.27 E-value=0.0046 Score=55.59 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
....|+++|.+|+|||||++.|.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45589999999999999999998753
No 391
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.26 E-value=0.0036 Score=51.16 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
+|+|+|.||+||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 392
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.22 E-value=0.022 Score=45.35 Aligned_cols=72 Identities=24% Similarity=0.200 Sum_probs=39.9
Q ss_pred EEEec-CCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 241 IIICG-FPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 241 I~lvG-~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
|+++| ..|+||||+...|...-.. ...+ ...-..+.. ..+.++||||..... ...++... |
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~-----vl~~d~d~~-~d~viiD~p~~~~~~----------~~~~l~~a-d 63 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKR-----VLLIDLDPQ-YDYIIIDTPPSLGLL----------TRNALAAA-D 63 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCc-----EEEEeCCCC-CCEEEEeCcCCCCHH----------HHHHHHHC-C
Confidence 56666 6799999987766531110 0100 000000000 478999999975321 12334444 9
Q ss_pred EEEEEEeCCCC
Q psy15712 320 AVLYFIDISEQ 330 (358)
Q Consensus 320 ~iL~VvD~s~~ 330 (358)
.++.+++.+..
T Consensus 64 ~viv~~~~~~~ 74 (104)
T cd02042 64 LVLIPVQPSPL 74 (104)
T ss_pred EEEEeccCCHH
Confidence 99999987653
No 393
>PF05729 NACHT: NACHT domain
Probab=96.13 E-value=0.021 Score=48.66 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.2
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.++|.|.+|+||||++..++.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 688999999999999999874
No 394
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.07 E-value=0.0051 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++|+|.+|+|||||++.|+|..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3478999999999999999999854
No 395
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.02 E-value=0.032 Score=45.67 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=19.0
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q psy15712 241 IIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~ 261 (358)
|++.|.||+||||+++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 679999999999999999863
No 396
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.0049 Score=57.42 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.2
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
-.|+++|.+|+|||||+|.+.|-.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999743
No 397
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.95 E-value=0.0082 Score=55.39 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.2
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.+...|+++|.+|+|||||++.|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999985
No 398
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=95.94 E-value=0.027 Score=54.68 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=54.5
Q ss_pred eeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC--------CCCHHHHHHHHH
Q psy15712 272 TKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC--------GHSIQEQIGLFK 343 (358)
Q Consensus 272 T~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~--------~~~~~~q~~ll~ 343 (358)
|.++....+.+++..+.+||++|... .+ ..+..++... ++|+||+|+|+-+ .....+-+.++.
T Consensus 148 T~Gi~~~~f~~~~~~~~~~DvgGq~~----~R----~kW~~~f~~v-~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~ 218 (317)
T cd00066 148 TTGIVETKFTIKNLKFRMFDVGGQRS----ER----KKWIHCFEDV-TAIIFVVALSEYDQVLFEDESTNRMQESLNLFD 218 (317)
T ss_pred cCCeeEEEEEecceEEEEECCCCCcc----cc----hhHHHHhCCC-CEEEEEEEchhcccccccCCcchHHHHHHHHHH
Confidence 55677777888888999999999842 12 2344555555 9999999999732 122444566777
Q ss_pred HHcc--cCCCCeEEEeC
Q psy15712 344 SIRP--LFNNKVGPLEY 358 (358)
Q Consensus 344 ~i~~--~f~~kPvilvf 358 (358)
++.. .|.++|++|+|
T Consensus 219 ~i~~~~~~~~~pill~~ 235 (317)
T cd00066 219 SICNSRWFANTSIILFL 235 (317)
T ss_pred HHHhCccccCCCEEEEc
Confidence 7664 67889999875
No 399
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.94 E-value=0.029 Score=45.37 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=45.4
Q ss_pred ecCCCCCHHHHHHHHhC-------CCCc-c-cCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 244 CGFPNVGKSSFLNKITR-------ADVD-V-QPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 244 vG~~nvGKSSLin~L~~-------~~~~-v-~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
-+..|+||||+.-.|.. .++. + .+..+. ..+.++|||+.... .....+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~-------------~D~IIiDtpp~~~~----------~~~~~l 62 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG-------------DDYVVVDLGRSLDE----------VSLAAL 62 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC-------------CCEEEEeCCCCcCH----------HHHHHH
Confidence 45688999997666642 1221 1 111111 17899999997632 122344
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHH
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSI 345 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i 345 (358)
... |.+++|++.+...-......++++.+.
T Consensus 63 ~~a-D~vlvvv~~~~~s~~~~~~~~~~l~~~ 92 (106)
T cd03111 63 DQA-DRVFLVTQQDLPSIRNAKRLLELLRVL 92 (106)
T ss_pred HHc-CeEEEEecCChHHHHHHHHHHHHHHHc
Confidence 444 999999987765444444445555544
No 400
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=95.91 E-value=0.039 Score=54.27 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=55.8
Q ss_pred ceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC--------CCCHHHHHHHH
Q psy15712 271 TTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC--------GHSIQEQIGLF 342 (358)
Q Consensus 271 tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~--------~~~~~~q~~ll 342 (358)
.|.++....+.+++..+.+||..|... .+ ..+..++... ++|+||+|+|+-+ .....+-+.+|
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~----~R----~kW~~~f~~v-~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f 240 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRS----ER----KKWIHCFDNV-TAIIFCVALSEYDQVLEEDESTNRMQESLNLF 240 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchh----hh----hhHHHHhCCC-CEEEEEEECcccccchhccCcchHHHHHHHHH
Confidence 355677777888888999999999832 22 2344555555 9999999999732 12244556677
Q ss_pred HHHcc--cCCCCeEEEeC
Q psy15712 343 KSIRP--LFNNKVGPLEY 358 (358)
Q Consensus 343 ~~i~~--~f~~kPvilvf 358 (358)
+++.. .|.+.|++|+|
T Consensus 241 ~~l~~~~~~~~~piil~~ 258 (342)
T smart00275 241 ESICNSRWFANTSIILFL 258 (342)
T ss_pred HHHHcCccccCCcEEEEE
Confidence 77764 67899999875
No 401
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=95.87 E-value=0.0069 Score=65.36 Aligned_cols=77 Identities=26% Similarity=0.320 Sum_probs=50.6
Q ss_pred ecCCCCCHHHHHHHHhCCCCcccC---CCcceeeeEEEEEEe---cCceEEEEeCCCCCCCC-cchHHHHHHHH-HHHHh
Q psy15712 244 CGFPNVGKSSFLNKITRADVDVQP---YAFTTKSLYVGHTDY---KYLRWQVIDTPGILDHS-LEDRNIIEMQA-VTALA 315 (358)
Q Consensus 244 vG~~nvGKSSLin~L~~~~~~v~~---~~~tT~~~~~~~~~~---~~~~~~liDTPG~~~~~-~~~~~~ie~~~-~~~l~ 315 (358)
.|.-++|||||+|.|+|..+.+.+ ...||+++...+... ....+.++|+=|...+- .++.. +|+++ .-++.
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~-fe~~~alf~la 79 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQD-FERKSALFALA 79 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccc-hHHHHHHHHHH
Confidence 488899999999999999976543 456888876554433 23578999999986542 23333 66543 33443
Q ss_pred hcccEEE
Q psy15712 316 HLRAAVL 322 (358)
Q Consensus 316 ~~~d~iL 322 (358)
-. |++|
T Consensus 80 ~s-~~~i 85 (742)
T PF05879_consen 80 VS-DVLI 85 (742)
T ss_pred hh-hhee
Confidence 33 6543
No 402
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.058 Score=57.12 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..+.+|+||+||||||||.+++..
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~ 372 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAK 372 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHH
Confidence 468999999999999999999873
No 403
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.81 E-value=0.047 Score=46.30 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=40.1
Q ss_pred EEecCCCCCHHHHHHHHhC------CCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 242 IICGFPNVGKSSFLNKITR------ADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 242 ~lvG~~nvGKSSLin~L~~------~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..-|.+|+||||+--.+.. .++..-+... +...+ ...+.++|||+..... ...++.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~-----~~~~~---~yd~VIiD~p~~~~~~----------~~~~l~ 65 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADL-----GLANL---DYDYIIIDTGAGISDN----------VLDFFL 65 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC-----CCCCC---CCCEEEEECCCCCCHH----------HHHHHH
Confidence 3457899999998666642 2221111111 00001 1578999999865321 223455
Q ss_pred hcccEEEEEEeCCCC
Q psy15712 316 HLRAAVLYFIDISEQ 330 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~ 330 (358)
+. |.+++|++++..
T Consensus 66 ~a-D~vviv~~~~~~ 79 (139)
T cd02038 66 AA-DEVIVVTTPEPT 79 (139)
T ss_pred hC-CeEEEEcCCChh
Confidence 55 999999987653
No 404
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.79 E-value=0.016 Score=53.95 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-+|+++|.+|+|||||++.|+|.-
T Consensus 53 Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 53 GERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCcc
Confidence 4489999999999999999999843
No 405
>KOG0465|consensus
Probab=95.77 E-value=0.013 Score=60.54 Aligned_cols=85 Identities=22% Similarity=0.275 Sum_probs=60.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHh---CCC-----C----------cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT---RAD-----V----------DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~---~~~-----~----------~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~ 299 (358)
...|+++-+--+||||+.+++. |.. + .....-+.|.......+.|...++.+|||||..+..
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 4478888899999999999886 211 0 011223666666667778888999999999999875
Q ss_pred cchHHHHHHHHHHHHhhcccEEEEEEeCCCCC
Q psy15712 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 300 ~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~ 331 (358)
.+- ..+|+-+ |++++|+|+....
T Consensus 119 ~EV--------eRALrVl-DGaVlvl~aV~GV 141 (721)
T KOG0465|consen 119 FEV--------ERALRVL-DGAVLVLDAVAGV 141 (721)
T ss_pred EEe--------hhhhhhc-cCeEEEEEcccce
Confidence 431 2356667 8888888887744
No 406
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.75 E-value=0.012 Score=43.33 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.9
Q ss_pred cEEEEecCCCCCHHHHHHHHh
Q psy15712 239 RTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~ 259 (358)
...+|.|.+|+||||++.++.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999885
No 407
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.74 E-value=0.0085 Score=54.36 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
+.+.|+++|++|+|||||++++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999974
No 408
>KOG0461|consensus
Probab=95.66 E-value=0.12 Score=50.38 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=51.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC----cccC---CCcceeeeEEEEEEe---------cCceEEEEeCCCCCCCCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV----DVQP---YAFTTKSLYVGHTDY---------KYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~----~v~~---~~~tT~~~~~~~~~~---------~~~~~~liDTPG~~~~~~ 300 (358)
...++++.|.-.+|||||..+|+.-.. ...+ .-+.|.+.-...+.. ...++.++|+||...
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas--- 82 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS--- 82 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---
Confidence 347899999999999999999974221 1111 123333332222221 123568999999831
Q ss_pred chHHHHHHHHHHHHhhcccEEEEEEeCCCCC
Q psy15712 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 301 ~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~ 331 (358)
.+ +++..-...-|..++|+|+....
T Consensus 83 ----LI--RtiiggaqiiDlm~lviDv~kG~ 107 (522)
T KOG0461|consen 83 ----LI--RTIIGGAQIIDLMILVIDVQKGK 107 (522)
T ss_pred ----HH--HHHHhhhheeeeeeEEEehhccc
Confidence 11 12222233348899999998743
No 409
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.65 E-value=0.039 Score=54.06 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=21.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...|+++|.||+|||||+|+|.+.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999864
No 410
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.64 E-value=0.014 Score=51.03 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=21.4
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHh
Q psy15712 221 LEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 221 l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
++.+...+. .........+++.|.+|+|||||++.+.
T Consensus 9 ~~~l~~~l~--~~~~~~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 9 IERLRDLLD--AAQSGSPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp HHHHHHTTG--GTSS-----EEE-B-TTSSHHHHHHHHH
T ss_pred HHHHHHHHH--HHHcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 444455553 2223345789999999999999999886
No 411
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.59 E-value=0.01 Score=49.75 Aligned_cols=21 Identities=38% Similarity=0.868 Sum_probs=19.0
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|+++|.||+||||++..|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999984
No 412
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.58 E-value=0.01 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
+....|+++|.+|+|||||.+.|.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999985
No 413
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.55 E-value=0.0097 Score=50.91 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.4
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
|+|+++|+.|+|||||+..|.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 414
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.51 E-value=0.12 Score=42.25 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=21.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...+.+.|.||+|||++++.+.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
No 415
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.51 E-value=0.012 Score=43.91 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.|++.|.+|+||||+.+.|...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999864
No 416
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.49 E-value=0.02 Score=51.06 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
...++++|.+|+|||||+++|++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3479999999999999999999743
No 417
>KOG3887|consensus
Probab=95.49 E-value=0.013 Score=54.45 Aligned_cols=86 Identities=22% Similarity=0.329 Sum_probs=49.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC-CcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.|+|.++|.--+||||+-......- +.-.-+.-.|..+...++...-..+++||-||.++.-...- ..++. .+.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~-D~e~i----F~~ 101 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSF-DYEMI----FRG 101 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCcc-CHHHH----Hhc
Confidence 4679999999999999877655321 11001111122222223322335789999999987522111 12222 223
Q ss_pred cccEEEEEEeCCC
Q psy15712 317 LRAAVLYFIDISE 329 (358)
Q Consensus 317 ~~d~iL~VvD~s~ 329 (358)
. .+++||+|+-+
T Consensus 102 ~-gALifvIDaQd 113 (347)
T KOG3887|consen 102 V-GALIFVIDAQD 113 (347)
T ss_pred c-CeEEEEEechH
Confidence 3 88999999755
No 418
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.48 E-value=0.012 Score=52.65 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-.++++|.+|+|||||+|.+.|-
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhc
Confidence 447999999999999999999874
No 419
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.46 E-value=0.013 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=22.3
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.+...|+|+|.+|+|||||.+.|.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999975
No 420
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.45 E-value=0.011 Score=54.65 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
-.++++|.+|+|||||+|.|.+-.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368999999999999999998643
No 421
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.44 E-value=0.013 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4489999999999999999999853
No 422
>KOG4181|consensus
Probab=95.44 E-value=0.05 Score=53.06 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
+..+|+++|.-|+|||||++.|.+.
T Consensus 187 df~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhcc
Confidence 4568999999999999999999864
No 423
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.43 E-value=0.014 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999999854
No 424
>PRK07261 topology modulation protein; Provisional
Probab=95.41 E-value=0.013 Score=51.77 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
+|+++|.||+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 425
>KOG0057|consensus
Probab=95.40 E-value=0.5 Score=48.81 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhH--hhhCCCCC-CCchhHHHHHHHHhhcccchhhhhHHHHHHhhHHHH
Q psy15712 111 SRIRSFYMRKIKYTQSNFHERLSQI--IQEFPKLD-NIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNV 179 (358)
Q Consensus 111 ~~~r~~~~~~l~~~~~~~~~~l~~i--~~~fp~~d-~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~~~~~l 179 (358)
.|+|..+.+--..+....++.|.+. ++.|-.=+ +..-|+..+.+.-...-.|..+++-+|-.+..+-..
T Consensus 200 n~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv 271 (591)
T KOG0057|consen 200 NRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSV 271 (591)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHH
Confidence 3555555555566666666666654 44443211 122344455555444556777777777777755533
No 426
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.39 E-value=0.015 Score=52.89 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4478999999999999999999864
No 427
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.38 E-value=0.013 Score=47.91 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.2
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q psy15712 241 IIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~ 261 (358)
|+|.|.|||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999865
No 428
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.38 E-value=0.015 Score=52.87 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999853
No 429
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37 E-value=0.015 Score=53.61 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 430
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.35 E-value=0.018 Score=59.72 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=23.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV 263 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~ 263 (358)
.-+|++||.+|+|||||++.|+|...
T Consensus 29 G~riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 29 GERIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCc
Confidence 45899999999999999999999764
No 431
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.015 Score=52.63 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=21.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.++++|.+|+|||||++.|+|-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999853
No 432
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.28 E-value=0.015 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999854
No 433
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.27 E-value=0.017 Score=51.39 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999854
No 434
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.26 E-value=0.017 Score=52.34 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999864
No 435
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.017 Score=52.58 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 436
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.23 E-value=0.018 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999864
No 437
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.21 E-value=0.019 Score=49.10 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3478999999999999999999854
No 438
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.21 E-value=0.017 Score=50.83 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~ 259 (358)
.+.|+++|.||+||||+.+.|.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 439
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.20 E-value=0.019 Score=46.42 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.2
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
..++++|.||+||||++..|...-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 478999999999999999998644
No 440
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.18 E-value=0.018 Score=51.86 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999999853
No 441
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.18 E-value=0.016 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.++|+|.+|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999764
No 442
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.18 E-value=0.016 Score=50.94 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.++++|.+|+|||||++.|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 443
>KOG2203|consensus
Probab=95.18 E-value=0.03 Score=57.37 Aligned_cols=78 Identities=21% Similarity=0.183 Sum_probs=51.9
Q ss_pred CCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcc----cCCCcceeeeEEEEEEecCceEEEEeCCCCCCC-CcchHHH
Q psy15712 231 LPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDV----QPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH-SLEDRNI 305 (358)
Q Consensus 231 l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v----~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~-~~~~~~~ 305 (358)
+....-....|+++|.-.+|||||+|.|+|..+.+ .....||+++-..+..--..-+.++|.-|-.-+ ..++ ..
T Consensus 30 l~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~i~p~i~vmDvEGTDGrERGED-qd 108 (772)
T KOG2203|consen 30 LRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAGIEPCILVMDVEGTDGRERGED-QD 108 (772)
T ss_pred ccccCcceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhcCCCCceEEEecccCCccccccc-cc
Confidence 33444456789999999999999999999988642 234567777655443221223788998887544 2233 55
Q ss_pred HHHH
Q psy15712 306 IEMQ 309 (358)
Q Consensus 306 ie~~ 309 (358)
.|++
T Consensus 109 FErk 112 (772)
T KOG2203|consen 109 FERK 112 (772)
T ss_pred HHHH
Confidence 6655
No 444
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.17 E-value=0.018 Score=52.70 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999999999864
No 445
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.17 E-value=0.12 Score=51.50 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=20.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...+++++|..++|||||.+-|++
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHH
Confidence 567999999999999999777663
No 446
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.16 E-value=0.019 Score=52.26 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999864
No 447
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.15 E-value=0.019 Score=51.85 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 448
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.15 E-value=0.019 Score=51.96 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 449
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.12 E-value=0.02 Score=51.28 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999864
No 450
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.12 E-value=0.02 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999999853
No 451
>PLN02772 guanylate kinase
Probab=95.12 E-value=0.026 Score=56.27 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=33.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc--ccCCCcceeeeEEEE
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD--VQPYAFTTKSLYVGH 279 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~--v~~~~~tT~~~~~~~ 279 (358)
....++++|.+|||||||+++|...... ....++||+.+..+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE 178 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREME 178 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccc
Confidence 4568999999999999999999875432 235678898877653
No 452
>KOG1533|consensus
Probab=95.11 E-value=0.03 Score=51.86 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=16.9
Q ss_pred EEEEecCCCCCHHHHHHHHh
Q psy15712 240 TIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~ 259 (358)
--+++|.||+||||..+-++
T Consensus 4 gqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred ceEEEcCCCCCccchhhhHH
Confidence 35789999999999988765
No 453
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.11 E-value=0.019 Score=52.37 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999864
No 454
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.11 E-value=0.02 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4478999999999999999999853
No 455
>PRK08118 topology modulation protein; Reviewed
Probab=95.10 E-value=0.018 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.3
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.+|+|+|.||+|||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999853
No 456
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.09 E-value=0.02 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.-.++++|.+|+|||||+++|+|
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999997
No 457
>PRK08233 hypothetical protein; Provisional
Probab=95.09 E-value=0.019 Score=50.31 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...|++.|.||+|||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468899999999999999999853
No 458
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.08 E-value=0.02 Score=52.87 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999999854
No 459
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.08 E-value=0.021 Score=52.00 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999864
No 460
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.021 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999854
No 461
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.07 E-value=0.02 Score=50.18 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=19.5
Q ss_pred cEEEEecCCCCCHHHHHHHHh
Q psy15712 239 RTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~ 259 (358)
+.++++|+.|+|||||+.+|.
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv 23 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLV 23 (161)
T ss_pred cEEEEEecCCCChhhHHHHHH
Confidence 578999999999999999995
No 462
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.04 E-value=0.021 Score=52.14 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4479999999999999999999854
No 463
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.03 E-value=0.021 Score=51.96 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999854
No 464
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.03 E-value=0.078 Score=52.36 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....++++|.||+|||||.++|.+
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999985
No 465
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.02 E-value=0.021 Score=51.69 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4478999999999999999999853
No 466
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.01 E-value=0.023 Score=49.56 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999864
No 467
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.01 E-value=0.022 Score=52.26 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 468
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.023 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999853
No 469
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.00 E-value=0.12 Score=49.44 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....++++|.+||||||++..|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 470
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.00 E-value=0.022 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
-|.++|.+|+|||||+|.++|.-
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l 56 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDL 56 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCcc
Confidence 46788999999999999999853
No 471
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.00 E-value=0.046 Score=52.42 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
+...|.++|.||+|||||++.+.+
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999988875
No 472
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.99 E-value=0.023 Score=52.47 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
..-.++++|.+|||||||+++++|.-
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999743
No 473
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.97 E-value=0.023 Score=51.35 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 474
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.96 E-value=0.024 Score=51.20 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4478999999999999999999853
No 475
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.95 E-value=0.024 Score=50.81 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999854
No 476
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.93 E-value=0.023 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999853
No 477
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.93 E-value=0.024 Score=51.93 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999999864
No 478
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.93 E-value=0.022 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-.++++|.+|+|||||++.|+|-
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999999985
No 479
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=94.93 E-value=0.18 Score=44.24 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=29.9
Q ss_pred cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHH
Q psy15712 283 KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFK 343 (358)
Q Consensus 283 ~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~ 343 (358)
....+.++||||.... ....++... |.+++|+.++...-......+++++
T Consensus 91 ~~~d~viiDtpp~~~~----------~~~~~l~~a-D~vliv~~~~~~~~~~~~~~~~~l~ 140 (179)
T cd03110 91 EGAELIIIDGPPGIGC----------PVIASLTGA-DAALLVTEPTPSGLHDLERAVELVR 140 (179)
T ss_pred cCCCEEEEECcCCCcH----------HHHHHHHcC-CEEEEEecCCcccHHHHHHHHHHHH
Confidence 3568999999976531 122344444 9999999887643333333344443
No 480
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.92 E-value=0.025 Score=50.85 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
..-.++++|.+|+|||||++.|+|-.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999854
No 481
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.92 E-value=0.025 Score=50.15 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999864
No 482
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.024 Score=52.23 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4478999999999999999999854
No 483
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.91 E-value=0.024 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999854
No 484
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.91 E-value=0.025 Score=51.40 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999999854
No 485
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.90 E-value=0.025 Score=50.96 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=22.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999854
No 486
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.90 E-value=0.025 Score=51.15 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999864
No 487
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.89 E-value=0.022 Score=50.64 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=30.1
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCC--cccCCCcceeeeEEE
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADV--DVQPYAFTTKSLYVG 278 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~--~v~~~~~tT~~~~~~ 278 (358)
..|+++|.+||||+|+.+.|..... .....+.||+....+
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~ 44 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPG 44 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCC
Confidence 4689999999999999999987753 234456677766443
No 488
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.89 E-value=0.024 Score=52.27 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-.++++|.+|+|||||++.|+|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 447899999999999999999986
No 489
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.88 E-value=0.025 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999853
No 490
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.87 E-value=0.086 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+|+|.+|||||||.+.|.+
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988754
No 491
>PRK10908 cell division protein FtsE; Provisional
Probab=94.86 E-value=0.026 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
..-.++++|.+|+|||||++.|+|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999864
No 492
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.86 E-value=0.019 Score=51.49 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.1
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q psy15712 241 IIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~ 261 (358)
|+++|.+|+|||||.+.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999999753
No 493
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.86 E-value=0.025 Score=52.00 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999999864
No 494
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.85 E-value=0.025 Score=51.11 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=22.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccC
Confidence 4478999999999999999999864
No 495
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.84 E-value=0.015 Score=51.66 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=26.3
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCC--cccCCCcceeee
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADV--DVQPYAFTTKSL 275 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~--~v~~~~~tT~~~ 275 (358)
..|+|+|.+|+|||||.++|..... .....+.||+.+
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~ 41 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPP 41 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-G
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCC
Confidence 4689999999999999999986432 123445566544
No 496
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.84 E-value=0.026 Score=52.45 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999853
No 497
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.83 E-value=0.086 Score=47.54 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.|+++|.+|+||||++++|.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 498
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.83 E-value=0.026 Score=52.20 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999864
No 499
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.83 E-value=0.025 Score=52.00 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3478999999999999999999853
No 500
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.83 E-value=0.026 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3468999999999999999999864
Done!