Query psy15712
Match_columns 358
No_of_seqs 483 out of 2892
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:33:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e87_A Hypothetical protein PH 100.0 7.5E-44 2.6E-48 348.0 30.4 285 74-358 3-287 (357)
2 2qtf_A Protein HFLX, GTP-bindi 99.8 2.7E-20 9.2E-25 182.1 17.5 222 118-358 63-299 (364)
3 2qu8_A Putative nucleolar GTP- 99.8 4.8E-18 1.6E-22 154.2 15.8 134 224-357 15-148 (228)
4 4a9a_A Ribosome-interacting GT 99.7 4.2E-18 1.4E-22 166.9 10.7 93 236-330 70-162 (376)
5 2gj8_A MNME, tRNA modification 99.7 2.9E-15 9.9E-20 130.0 15.9 116 238-357 4-121 (172)
6 1wf3_A GTP-binding protein; GT 99.6 1.9E-15 6.6E-20 143.9 15.0 116 238-357 7-123 (301)
7 3iev_A GTP-binding protein ERA 99.6 2.5E-15 8.6E-20 143.4 15.1 118 236-358 8-129 (308)
8 1mky_A Probable GTP-binding pr 99.6 1.5E-15 5.2E-20 151.6 12.9 113 239-357 2-116 (439)
9 3iby_A Ferrous iron transport 99.6 3.4E-15 1.1E-19 139.0 13.5 113 239-358 2-117 (256)
10 3lxw_A GTPase IMAP family memb 99.6 2E-15 6.8E-20 139.5 10.7 121 236-357 19-145 (247)
11 3lxx_A GTPase IMAP family memb 99.6 5.8E-15 2E-19 134.9 12.3 121 237-358 28-152 (239)
12 3i8s_A Ferrous iron transport 99.6 7.6E-15 2.6E-19 137.7 13.2 114 238-358 3-119 (274)
13 2wji_A Ferrous iron transport 99.6 3.1E-14 1.1E-18 122.2 14.6 111 238-357 3-114 (165)
14 3a1s_A Iron(II) transport prot 99.6 2.4E-14 8.3E-19 133.2 13.9 111 238-357 5-116 (258)
15 2hjg_A GTP-binding protein ENG 99.6 3.5E-15 1.2E-19 148.9 8.6 113 239-357 4-117 (436)
16 2xtp_A GTPase IMAP family memb 99.6 2.5E-14 8.7E-19 132.2 13.2 120 237-358 21-145 (260)
17 3gee_A MNME, tRNA modification 99.5 1.4E-14 4.9E-19 146.1 11.5 112 238-358 233-350 (476)
18 1xzp_A Probable tRNA modificat 99.5 3.3E-14 1.1E-18 143.7 13.9 113 238-358 243-357 (482)
19 4dhe_A Probable GTP-binding pr 99.5 3.3E-14 1.1E-18 127.5 12.3 118 236-358 27-151 (223)
20 2dyk_A GTP-binding protein; GT 99.5 4.4E-14 1.5E-18 119.3 12.3 112 239-357 2-114 (161)
21 3b1v_A Ferrous iron uptake tra 99.5 3.8E-14 1.3E-18 133.0 12.8 110 238-357 3-113 (272)
22 1h65_A Chloroplast outer envel 99.5 2.2E-14 7.6E-19 133.8 11.0 119 237-358 38-161 (270)
23 3def_A T7I23.11 protein; chlor 99.5 3.2E-14 1.1E-18 132.3 12.0 119 237-358 35-158 (262)
24 4dcu_A GTP-binding protein ENG 99.5 9.8E-15 3.3E-19 146.5 8.6 114 238-357 23-137 (456)
25 2hjg_A GTP-binding protein ENG 99.5 3.1E-14 1.1E-18 142.0 11.9 116 236-357 173-292 (436)
26 3k53_A Ferrous iron transport 99.5 6.9E-14 2.4E-18 130.5 13.3 112 238-357 3-115 (271)
27 2wjg_A FEOB, ferrous iron tran 99.5 1.4E-13 4.6E-18 119.8 14.2 112 237-357 6-118 (188)
28 1lnz_A SPO0B-associated GTP-bi 99.5 7.6E-15 2.6E-19 142.3 6.2 118 239-358 159-281 (342)
29 3tw8_B RAS-related protein RAB 99.5 8.2E-14 2.8E-18 119.7 10.8 110 237-357 8-119 (181)
30 2aka_B Dynamin-1; fusion prote 99.5 6.4E-13 2.2E-17 124.7 16.7 134 220-357 7-198 (299)
31 1svi_A GTP-binding protein YSX 99.5 4.6E-13 1.6E-17 117.1 14.4 113 237-357 22-140 (195)
32 1jwy_B Dynamin A GTPase domain 99.5 4.4E-13 1.5E-17 127.0 14.9 135 219-358 5-205 (315)
33 3clv_A RAB5 protein, putative; 99.5 2.5E-13 8.6E-18 118.5 10.4 109 237-357 6-153 (208)
34 2bme_A RAB4A, RAS-related prot 99.4 2.4E-13 8.3E-18 117.8 10.0 110 237-357 9-121 (186)
35 2il1_A RAB12; G-protein, GDP, 99.4 3.3E-13 1.1E-17 118.7 11.0 112 235-357 23-137 (192)
36 3pqc_A Probable GTP-binding pr 99.4 1.3E-12 4.5E-17 113.7 14.6 114 236-357 21-139 (195)
37 2lkc_A Translation initiation 99.4 2.4E-13 8.1E-18 116.9 9.5 110 234-357 4-113 (178)
38 1zd9_A ADP-ribosylation factor 99.4 7.5E-13 2.6E-17 115.8 12.8 108 237-357 21-130 (188)
39 1ek0_A Protein (GTP-binding pr 99.4 4.4E-13 1.5E-17 113.7 11.0 109 238-357 3-114 (170)
40 3r7w_A Gtpase1, GTP-binding pr 99.4 4E-13 1.4E-17 127.9 11.7 117 237-357 2-121 (307)
41 3tkl_A RAS-related protein RAB 99.4 2.8E-13 9.6E-18 118.4 9.8 110 237-357 15-127 (196)
42 1z2a_A RAS-related protein RAB 99.4 1.3E-13 4.6E-18 117.0 7.5 110 237-357 4-115 (168)
43 1ksh_A ARF-like protein 2; sma 99.4 4.9E-13 1.7E-17 116.2 11.3 107 237-357 17-125 (186)
44 4dcu_A GTP-binding protein ENG 99.4 3.9E-13 1.3E-17 134.8 11.9 116 236-357 193-312 (456)
45 1z06_A RAS-related protein RAB 99.4 5.5E-13 1.9E-17 116.5 11.4 110 237-357 19-133 (189)
46 1u8z_A RAS-related protein RAL 99.4 7.6E-13 2.6E-17 111.9 11.9 108 238-357 4-115 (168)
47 1zj6_A ADP-ribosylation factor 99.4 4.6E-13 1.6E-17 116.8 10.7 107 237-357 15-123 (187)
48 3cph_A RAS-related protein SEC 99.4 2.1E-13 7.1E-18 121.0 8.7 110 237-357 19-131 (213)
49 1fzq_A ADP-ribosylation factor 99.4 1.2E-12 4.2E-17 114.0 13.2 112 232-357 10-123 (181)
50 1wms_A RAB-9, RAB9, RAS-relate 99.4 2.6E-13 8.9E-18 116.5 8.7 110 237-357 6-122 (177)
51 3geh_A MNME, tRNA modification 99.4 6.6E-14 2.3E-18 140.8 5.6 109 238-358 224-337 (462)
52 1r8s_A ADP-ribosylation factor 99.4 8.2E-13 2.8E-17 111.9 11.5 104 240-357 2-107 (164)
53 1mky_A Probable GTP-binding pr 99.4 8E-13 2.8E-17 131.9 13.1 115 237-357 179-298 (439)
54 3bc1_A RAS-related protein RAB 99.4 4.6E-13 1.6E-17 116.2 9.8 110 237-357 10-133 (195)
55 1ega_A Protein (GTP-binding pr 99.4 5.8E-14 2E-18 133.5 4.4 110 238-357 8-122 (301)
56 1g16_A RAS-related protein SEC 99.4 1.7E-13 6E-18 116.5 7.0 109 238-357 3-114 (170)
57 2g6b_A RAS-related protein RAB 99.4 4.6E-13 1.6E-17 115.3 9.7 110 237-357 9-122 (180)
58 1z0f_A RAB14, member RAS oncog 99.4 6.9E-13 2.3E-17 113.7 10.6 110 237-357 14-126 (179)
59 2bov_A RAla, RAS-related prote 99.4 9.3E-13 3.2E-17 116.0 11.8 109 237-357 13-125 (206)
60 2y8e_A RAB-protein 6, GH09086P 99.4 4.6E-13 1.6E-17 114.8 9.3 109 238-357 14-125 (179)
61 2f7s_A C25KG, RAS-related prot 99.4 5.9E-13 2E-17 118.9 10.2 110 237-357 24-147 (217)
62 2hup_A RAS-related protein RAB 99.4 5.9E-13 2E-17 118.1 9.9 110 237-357 28-140 (201)
63 2h17_A ADP-ribosylation factor 99.4 2.6E-13 9E-18 117.9 7.3 107 236-357 19-128 (181)
64 1upt_A ARL1, ADP-ribosylation 99.4 8.9E-13 3E-17 112.3 10.2 107 237-357 6-114 (171)
65 2efe_B Small GTP-binding prote 99.4 8.2E-13 2.8E-17 113.8 10.1 110 237-357 11-123 (181)
66 1jal_A YCHF protein; nucleotid 99.4 1.4E-13 4.7E-18 134.2 5.7 90 239-330 3-109 (363)
67 1zbd_A Rabphilin-3A; G protein 99.4 1.3E-12 4.3E-17 115.3 11.5 110 237-357 7-119 (203)
68 1wxq_A GTP-binding protein; st 99.4 1.8E-13 6.1E-18 135.2 6.6 89 240-330 2-114 (397)
69 1z08_A RAS-related protein RAB 99.4 3.4E-13 1.2E-17 114.9 7.5 110 237-357 5-117 (170)
70 1kao_A RAP2A; GTP-binding prot 99.4 1.5E-12 5.3E-17 109.8 11.5 108 238-357 3-114 (167)
71 2a9k_A RAS-related protein RAL 99.4 1.2E-12 4E-17 113.0 10.9 109 237-357 17-129 (187)
72 3t5d_A Septin-7; GTP-binding p 99.4 2E-12 6.9E-17 120.8 13.3 117 237-358 7-151 (274)
73 4dsu_A GTPase KRAS, isoform 2B 99.4 1.1E-12 3.6E-17 113.7 10.6 109 237-357 3-115 (189)
74 1z0j_A RAB-22, RAS-related pro 99.4 1.2E-12 4E-17 111.3 10.4 109 238-357 6-117 (170)
75 2fu5_C RAS-related protein RAB 99.4 1.9E-13 6.6E-18 118.3 5.4 110 237-357 7-119 (183)
76 3q85_A GTP-binding protein REM 99.4 9.7E-13 3.3E-17 112.1 9.7 110 238-357 2-115 (169)
77 3cbq_A GTP-binding protein REM 99.4 7.4E-13 2.5E-17 117.2 9.1 112 236-357 21-136 (195)
78 4bas_A ADP-ribosylation factor 99.4 5.3E-13 1.8E-17 116.9 8.1 110 236-357 15-133 (199)
79 1x3s_A RAS-related protein RAB 99.4 1.1E-12 3.8E-17 114.3 10.1 109 238-357 15-127 (195)
80 1r2q_A RAS-related protein RAB 99.4 1.8E-12 6.2E-17 109.9 10.9 109 238-357 6-117 (170)
81 2o52_A RAS-related protein RAB 99.4 5.4E-13 1.8E-17 118.2 7.8 110 237-357 24-136 (200)
82 2h57_A ADP-ribosylation factor 99.4 5.6E-13 1.9E-17 116.5 7.6 109 237-357 20-132 (190)
83 1ky3_A GTP-binding protein YPT 99.4 3.9E-13 1.3E-17 115.6 6.5 110 237-357 7-124 (182)
84 2b6h_A ADP-ribosylation factor 99.4 2.4E-12 8.3E-17 113.3 11.6 108 236-357 27-136 (192)
85 2bcg_Y Protein YP2, GTP-bindin 99.4 2.2E-12 7.7E-17 114.1 11.2 110 237-357 7-119 (206)
86 2p5s_A RAS and EF-hand domain 99.4 1.6E-12 5.4E-17 114.7 10.1 110 237-357 27-139 (199)
87 2ohf_A Protein OLA1, GTP-bindi 99.4 4E-13 1.4E-17 132.2 6.8 92 237-330 21-129 (396)
88 2ew1_A RAS-related protein RAB 99.4 1.3E-12 4.5E-17 116.4 9.7 110 237-357 25-137 (201)
89 2hxs_A RAB-26, RAS-related pro 99.4 3.1E-13 1.1E-17 116.1 5.4 86 237-331 5-93 (178)
90 2erx_A GTP-binding protein DI- 99.4 2.3E-12 8E-17 109.5 10.7 110 238-357 3-115 (172)
91 2q3h_A RAS homolog gene family 99.4 2.2E-12 7.6E-17 113.6 10.8 110 236-357 18-130 (201)
92 2oil_A CATX-8, RAS-related pro 99.4 1.4E-12 4.7E-17 114.2 9.3 110 237-357 24-136 (193)
93 1moz_A ARL1, ADP-ribosylation 99.4 5.2E-13 1.8E-17 115.4 6.3 107 237-357 17-125 (183)
94 2fn4_A P23, RAS-related protei 99.4 1.7E-12 5.9E-17 111.4 9.6 110 236-357 7-120 (181)
95 1vg8_A RAS-related protein RAB 99.4 3.6E-13 1.2E-17 118.9 5.0 110 237-357 7-123 (207)
96 2j1l_A RHO-related GTP-binding 99.4 1.9E-12 6.4E-17 116.0 9.7 109 237-357 33-144 (214)
97 2a5j_A RAS-related protein RAB 99.4 9.4E-13 3.2E-17 115.3 7.5 111 236-357 19-132 (191)
98 2fg5_A RAB-22B, RAS-related pr 99.4 1.7E-12 6E-17 113.8 9.1 110 237-357 22-134 (192)
99 1m2o_B GTP-binding protein SAR 99.4 1.7E-12 5.8E-17 114.1 8.9 107 237-357 22-130 (190)
100 1f6b_A SAR1; gtpases, N-termin 99.4 1.3E-12 4.5E-17 115.7 8.3 107 237-357 24-132 (198)
101 2yc2_C IFT27, small RAB-relate 99.3 6.7E-13 2.3E-17 116.9 6.1 110 237-357 19-138 (208)
102 2iwr_A Centaurin gamma 1; ANK 99.3 3.9E-12 1.3E-16 109.5 10.8 103 237-357 6-114 (178)
103 4gzl_A RAS-related C3 botulinu 99.3 9.8E-13 3.3E-17 117.0 7.2 109 237-357 29-140 (204)
104 1c1y_A RAS-related protein RAP 99.3 2.5E-12 8.5E-17 108.9 9.4 108 238-357 3-114 (167)
105 2x2e_A Dynamin-1; nitration, h 99.3 9.5E-12 3.3E-16 120.6 14.7 118 236-357 29-203 (353)
106 3t5g_A GTP-binding protein RHE 99.3 4.8E-12 1.6E-16 109.2 11.1 109 237-357 5-117 (181)
107 2nzj_A GTP-binding protein REM 99.3 2E-12 6.9E-17 110.5 8.6 110 237-357 3-117 (175)
108 1mh1_A RAC1; GTP-binding, GTPa 99.3 1.1E-12 3.8E-17 113.3 6.9 109 237-357 4-115 (186)
109 2gf0_A GTP-binding protein DI- 99.3 4.8E-12 1.7E-16 110.7 11.0 111 237-357 7-120 (199)
110 3kkq_A RAS-related protein M-R 99.3 4.4E-12 1.5E-16 109.7 10.2 113 233-357 13-129 (183)
111 2gf9_A RAS-related protein RAB 99.3 6.7E-12 2.3E-16 109.5 11.4 110 237-357 21-133 (189)
112 3dz8_A RAS-related protein RAB 99.3 1.5E-12 5.1E-17 114.1 6.9 110 237-357 22-134 (191)
113 3reg_A RHO-like small GTPase; 99.3 1.6E-12 5.6E-17 113.9 7.2 109 237-357 22-133 (194)
114 3q72_A GTP-binding protein RAD 99.3 3.6E-12 1.2E-16 108.2 9.1 106 238-357 2-112 (166)
115 2qpt_A EH domain-containing pr 99.3 7.2E-12 2.5E-16 128.5 13.0 117 236-357 63-224 (550)
116 3t34_A Dynamin-related protein 99.3 1.4E-11 4.8E-16 119.6 14.2 121 233-357 29-209 (360)
117 2x77_A ADP-ribosylation factor 99.3 5.7E-12 1.9E-16 109.8 10.2 107 237-357 21-129 (189)
118 3cpj_B GTP-binding protein YPT 99.3 4.7E-12 1.6E-16 114.0 9.8 110 237-357 12-124 (223)
119 2atv_A RERG, RAS-like estrogen 99.3 9.9E-12 3.4E-16 109.2 11.6 108 237-357 27-138 (196)
120 3con_A GTPase NRAS; structural 99.3 6.1E-12 2.1E-16 109.6 10.0 108 238-357 21-132 (190)
121 2ce2_X GTPase HRAS; signaling 99.3 7.5E-12 2.6E-16 105.3 10.0 108 238-357 3-114 (166)
122 3l0i_B RAS-related protein RAB 99.3 7.7E-13 2.6E-17 116.8 4.0 111 237-358 32-145 (199)
123 2gco_A H9, RHO-related GTP-bin 99.3 1.9E-12 6.4E-17 114.6 6.5 113 233-357 20-135 (201)
124 2j0v_A RAC-like GTP-binding pr 99.3 5.9E-12 2E-16 111.9 9.8 109 237-357 8-119 (212)
125 2fh5_B SR-beta, signal recogni 99.3 1.2E-11 4E-16 110.1 11.7 81 237-329 6-90 (214)
126 2atx_A Small GTP binding prote 99.3 7E-12 2.4E-16 109.7 9.7 109 237-357 17-128 (194)
127 3llu_A RAS-related GTP-binding 99.3 1.7E-11 6E-16 107.9 12.1 116 236-357 18-135 (196)
128 2dby_A GTP-binding protein; GD 99.3 3E-12 1E-16 125.1 7.3 89 239-329 2-111 (368)
129 3q3j_B RHO-related GTP-binding 99.3 5.7E-12 2E-16 113.0 8.1 109 237-357 26-137 (214)
130 3c5c_A RAS-like protein 12; GD 99.3 2.1E-11 7.2E-16 106.7 11.5 108 237-357 20-133 (187)
131 3ihw_A Centg3; RAS, centaurin, 99.3 1.1E-11 3.9E-16 108.3 9.7 104 236-357 18-125 (184)
132 3gj0_A GTP-binding nuclear pro 99.3 1.5E-12 5.3E-17 116.7 4.3 111 236-357 13-125 (221)
133 1m7b_A RND3/RHOE small GTP-bin 99.3 5.4E-12 1.8E-16 109.8 7.3 109 237-357 6-117 (184)
134 3qq5_A Small GTP-binding prote 99.3 3E-12 1E-16 127.3 6.5 114 236-358 32-147 (423)
135 3oes_A GTPase rhebl1; small GT 99.3 1.5E-11 5.2E-16 108.6 10.3 109 237-357 23-135 (201)
136 2fv8_A H6, RHO-related GTP-bin 99.3 2.7E-12 9.1E-17 114.1 5.4 109 237-357 24-135 (207)
137 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 4.7E-12 1.6E-16 124.6 7.6 91 237-329 19-127 (392)
138 2cxx_A Probable GTP-binding pr 99.3 1.3E-11 4.5E-16 106.9 9.6 87 239-329 2-94 (190)
139 3t1o_A Gliding protein MGLA; G 99.3 4.8E-12 1.6E-16 110.2 6.7 112 237-357 13-141 (198)
140 2ged_A SR-beta, signal recogni 99.3 1.1E-11 3.8E-16 108.2 9.1 109 236-358 46-163 (193)
141 3bwd_D RAC-like GTP-binding pr 99.3 1.1E-12 3.7E-17 113.1 2.5 109 237-357 7-118 (182)
142 3lvq_E ARF-GAP with SH3 domain 99.3 8.3E-12 2.8E-16 126.1 9.2 108 237-358 321-430 (497)
143 2zej_A Dardarin, leucine-rich 99.3 1.1E-11 3.6E-16 108.2 8.4 109 239-357 3-118 (184)
144 1gwn_A RHO-related GTP-binding 99.2 7.9E-12 2.7E-16 111.6 7.2 109 237-357 27-138 (205)
145 4djt_A GTP-binding nuclear pro 99.2 1E-11 3.5E-16 110.8 7.9 110 237-357 10-123 (218)
146 3zvr_A Dynamin-1; hydrolase, D 99.2 9.3E-11 3.2E-15 123.8 16.3 119 236-358 49-224 (772)
147 3o47_A ADP-ribosylation factor 99.2 2.3E-11 7.7E-16 117.0 10.7 107 237-357 164-272 (329)
148 4dkx_A RAS-related protein RAB 99.2 1.6E-11 5.6E-16 111.1 8.5 109 238-357 13-124 (216)
149 1nrj_B SR-beta, signal recogni 99.2 2.1E-11 7.2E-16 108.7 8.8 106 236-358 10-127 (218)
150 2wkq_A NPH1-1, RAS-related C3 99.2 1E-11 3.5E-16 117.6 6.9 109 237-357 154-265 (332)
151 3th5_A RAS-related C3 botulinu 98.9 1.1E-12 3.9E-17 116.0 0.0 109 237-357 29-140 (204)
152 1udx_A The GTP-binding protein 99.2 9.9E-12 3.4E-16 123.3 6.7 88 239-328 158-246 (416)
153 2g3y_A GTP-binding protein GEM 99.2 8.5E-11 2.9E-15 106.0 11.0 111 237-357 36-151 (211)
154 2f9l_A RAB11B, member RAS onco 99.2 4.4E-11 1.5E-15 105.5 8.2 109 238-357 5-116 (199)
155 1pui_A ENGB, probable GTP-bind 99.2 1.5E-10 5E-15 102.5 11.6 93 237-332 25-123 (210)
156 2cjw_A GTP-binding protein GEM 99.2 5E-11 1.7E-15 105.0 8.4 111 237-357 5-120 (192)
157 3j2k_7 ERF3, eukaryotic polype 99.2 2.1E-10 7.2E-15 114.5 13.9 86 237-331 16-132 (439)
158 1f5n_A Interferon-induced guan 99.2 2.9E-11 1E-15 124.6 7.4 103 235-342 35-145 (592)
159 2j69_A Bacterial dynamin-like 99.2 7E-11 2.4E-15 124.4 10.1 110 237-357 68-236 (695)
160 1puj_A YLQF, conserved hypothe 99.1 6.5E-11 2.2E-15 111.6 8.5 64 236-302 118-182 (282)
161 3izq_1 HBS1P, elongation facto 99.1 5.3E-11 1.8E-15 123.6 7.1 85 236-329 165-280 (611)
162 3p26_A Elongation factor 1 alp 99.1 1.1E-10 3.8E-15 117.8 9.2 85 237-330 32-147 (483)
163 3tr5_A RF-3, peptide chain rel 99.1 4.6E-11 1.6E-15 121.9 6.3 106 238-357 13-140 (528)
164 1wb1_A Translation elongation 99.1 1.2E-10 4.2E-15 117.6 9.0 107 237-357 18-131 (482)
165 3dpu_A RAB family protein; roc 99.1 8.5E-11 2.9E-15 120.0 7.0 108 236-357 39-156 (535)
166 1oix_A RAS-related protein RAB 99.1 1E-09 3.5E-14 96.4 12.2 109 238-357 29-140 (191)
167 2c78_A Elongation factor TU-A; 99.1 3.2E-10 1.1E-14 111.8 9.0 86 237-331 10-112 (405)
168 3izy_P Translation initiation 99.0 2E-11 6.9E-16 124.6 0.3 107 237-357 3-110 (537)
169 3ec1_A YQEH GTPase; atnos1, at 99.0 2.1E-10 7E-15 112.1 5.6 86 239-329 163-257 (369)
170 1zo1_I IF2, translation initia 99.0 1E-10 3.4E-15 118.5 3.3 108 236-357 2-109 (501)
171 1zun_B Sulfate adenylate trans 99.0 1.3E-09 4.4E-14 108.5 11.1 108 237-357 23-163 (434)
172 1d2e_A Elongation factor TU (E 99.0 1E-09 3.4E-14 108.1 10.2 85 238-331 3-103 (397)
173 2xex_A Elongation factor G; GT 99.0 5.6E-10 1.9E-14 117.5 8.8 107 237-357 9-133 (693)
174 3h2y_A GTPase family protein; 99.0 3.4E-10 1.2E-14 110.5 6.2 86 239-328 161-255 (368)
175 2h5e_A Peptide chain release f 99.0 1.4E-09 4.9E-14 110.9 10.1 106 238-357 13-140 (529)
176 2elf_A Protein translation elo 99.0 1.1E-09 3.9E-14 106.9 8.9 73 240-330 23-95 (370)
177 3sjy_A Translation initiation 99.0 1.5E-09 5.2E-14 106.9 9.9 109 236-357 6-135 (403)
178 2www_A Methylmalonic aciduria 98.9 5.7E-10 1.9E-14 108.1 5.6 28 233-260 69-96 (349)
179 1kk1_A EIF2gamma; initiation o 98.9 3.6E-09 1.2E-13 104.4 11.3 108 237-357 9-143 (410)
180 1dar_A EF-G, elongation factor 98.9 2.5E-09 8.6E-14 112.5 10.2 107 237-357 11-135 (691)
181 3cnl_A YLQF, putative uncharac 98.9 1.4E-09 4.6E-14 101.4 6.5 113 162-300 46-159 (262)
182 1f60_A Elongation factor EEF1A 98.9 8.1E-10 2.8E-14 110.8 4.8 84 238-330 7-121 (458)
183 1jny_A EF-1-alpha, elongation 98.9 1.6E-09 5.5E-14 107.9 6.6 84 237-329 5-119 (435)
184 3r7w_B Gtpase2, GTP-binding pr 98.9 6.5E-09 2.2E-13 99.8 10.6 110 240-357 1-112 (331)
185 2qag_A Septin-2, protein NEDD5 98.9 7.2E-09 2.5E-13 100.8 10.7 115 238-357 37-180 (361)
186 1s0u_A EIF-2-gamma, translatio 98.9 8E-09 2.7E-13 101.9 10.8 86 237-331 7-118 (408)
187 2rdo_7 EF-G, elongation factor 98.8 1.4E-08 4.9E-13 106.9 13.0 107 237-357 9-140 (704)
188 3mca_A HBS1, elongation factor 98.8 4.6E-10 1.6E-14 116.1 1.5 85 237-330 176-291 (592)
189 3p32_A Probable GTPase RV1496/ 98.8 7.3E-09 2.5E-13 100.4 9.4 24 236-259 77-100 (355)
190 1g7s_A Translation initiation 98.8 2.2E-09 7.5E-14 111.0 5.9 107 237-357 4-128 (594)
191 3cb4_D GTP-binding protein LEP 98.8 7.3E-09 2.5E-13 107.1 9.7 106 238-357 4-129 (599)
192 1r5b_A Eukaryotic peptide chai 98.8 3.3E-09 1.1E-13 106.6 6.9 85 237-330 42-157 (467)
193 2ywe_A GTP-binding protein LEP 98.8 7.1E-09 2.4E-13 107.2 9.2 106 238-357 6-131 (600)
194 3c5h_A Glucocorticoid receptor 98.8 3.9E-09 1.3E-13 97.4 5.7 29 233-261 14-51 (255)
195 3avx_A Elongation factor TS, e 98.8 1.5E-08 5.1E-13 110.7 10.8 99 237-344 295-409 (1289)
196 1n0u_A EF-2, elongation factor 98.8 1.3E-08 4.5E-13 109.3 9.2 106 238-357 19-156 (842)
197 2dy1_A Elongation factor G; tr 98.7 5.5E-08 1.9E-12 101.9 12.4 107 237-357 8-132 (665)
198 2p67_A LAO/AO transport system 98.7 4.2E-08 1.4E-12 94.6 8.8 81 237-329 55-181 (341)
199 3vqt_A RF-3, peptide chain rel 98.6 1E-07 3.6E-12 97.6 10.0 106 238-357 31-158 (548)
200 3q5d_A Atlastin-1; G protein, 98.6 1.3E-07 4.6E-12 94.3 9.8 106 235-345 64-196 (447)
201 2yhs_A FTSY, cell division pro 98.6 4.8E-07 1.6E-11 91.2 13.4 198 117-344 199-436 (503)
202 2qm8_A GTPase/ATPase; G protei 98.5 2.1E-07 7.3E-12 89.6 7.7 23 237-259 54-76 (337)
203 2qnr_A Septin-2, protein NEDD5 98.5 1E-06 3.4E-11 83.4 12.0 62 236-297 16-88 (301)
204 2qag_C Septin-7; cell cycle, c 98.4 1.2E-06 3.9E-11 86.9 12.4 65 234-298 27-101 (418)
205 2qag_B Septin-6, protein NEDD5 98.4 1.2E-06 4.1E-11 86.9 12.3 113 239-357 43-182 (427)
206 2j37_W Signal recognition part 98.4 7.3E-07 2.5E-11 90.3 10.7 103 237-344 100-238 (504)
207 3b9q_A Chloroplast SRP recepto 98.4 7.8E-06 2.7E-10 77.4 16.8 119 118-260 4-122 (302)
208 3sop_A Neuronal-specific septi 98.4 1.2E-06 4E-11 81.8 10.8 114 239-357 3-146 (270)
209 3j25_A Tetracycline resistance 98.3 3.5E-07 1.2E-11 95.3 5.8 98 239-345 3-118 (638)
210 2v3c_C SRP54, signal recogniti 98.3 1.3E-06 4.4E-11 86.9 9.6 87 238-329 99-222 (432)
211 3dm5_A SRP54, signal recogniti 98.3 5.7E-06 2E-10 82.4 13.9 103 237-344 99-237 (443)
212 1zu4_A FTSY; GTPase, signal re 98.3 7.5E-06 2.5E-10 78.2 14.2 118 119-259 9-126 (320)
213 3kl4_A SRP54, signal recogniti 98.3 2.5E-06 8.5E-11 84.8 11.0 176 144-344 23-236 (433)
214 2og2_A Putative signal recogni 98.2 2.7E-05 9.2E-10 75.6 16.2 199 119-343 62-300 (359)
215 2wsm_A Hydrogenase expression/ 98.2 7.2E-07 2.5E-11 79.3 3.9 24 238-261 30-53 (221)
216 1vma_A Cell division protein F 98.2 3.8E-06 1.3E-10 79.8 9.0 105 117-260 19-126 (306)
217 4fn5_A EF-G 1, elongation fact 98.2 6.8E-06 2.3E-10 86.6 11.2 88 237-333 12-124 (709)
218 1rj9_A FTSY, signal recognitio 98.0 1.3E-05 4.3E-10 76.1 9.0 105 237-343 101-244 (304)
219 1tq4_A IIGP1, interferon-induc 98.0 3.4E-05 1.2E-09 76.2 11.6 107 238-357 69-181 (413)
220 1yrb_A ATP(GTP)binding protein 98.0 1.2E-06 4.3E-11 79.9 1.2 28 237-264 13-45 (262)
221 3e70_C DPA, signal recognition 98.0 5.6E-05 1.9E-09 72.4 12.2 102 237-343 128-265 (328)
222 1j8m_F SRP54, signal recogniti 97.9 0.00014 4.8E-09 68.6 13.1 22 238-259 98-119 (297)
223 2xxa_A Signal recognition part 97.9 3.2E-05 1.1E-09 76.8 9.1 102 237-343 99-237 (433)
224 3szr_A Interferon-induced GTP- 97.8 0.00023 7.8E-09 73.7 14.0 26 237-262 44-69 (608)
225 2hf9_A Probable hydrogenase ni 97.7 1.2E-05 4.2E-10 71.4 3.3 25 237-261 37-61 (226)
226 2yv5_A YJEQ protein; hydrolase 97.7 5.8E-05 2E-09 71.2 7.1 55 239-297 166-228 (302)
227 1t9h_A YLOQ, probable GTPase E 97.7 1E-05 3.5E-10 76.9 1.8 58 238-299 173-238 (307)
228 4ido_A Atlastin-1; GTPase, GTP 97.7 0.00031 1.1E-08 69.9 12.3 105 237-345 66-196 (457)
229 2ffh_A Protein (FFH); SRP54, s 97.5 0.0019 6.6E-08 63.8 16.0 23 237-259 97-119 (425)
230 1u0l_A Probable GTPase ENGC; p 97.4 0.00013 4.5E-09 68.7 5.8 57 239-298 170-234 (301)
231 2rcn_A Probable GTPase ENGC; Y 97.4 5.8E-05 2E-09 73.2 3.3 58 239-299 216-282 (358)
232 3ney_A 55 kDa erythrocyte memb 97.3 2.4E-05 8.1E-10 69.6 -1.3 56 238-295 19-76 (197)
233 1kgd_A CASK, peripheral plasma 96.9 0.00038 1.3E-08 60.1 2.5 41 238-278 5-47 (180)
234 2px0_A Flagellar biosynthesis 96.9 0.00033 1.1E-08 65.9 2.2 23 237-259 104-126 (296)
235 1zcb_A G alpha I/13; GTP-bindi 96.9 0.00087 3E-08 64.9 5.2 78 272-358 188-275 (362)
236 1cip_A Protein (guanine nucleo 96.8 0.00059 2E-08 65.9 3.5 78 272-358 180-267 (353)
237 4fid_A G protein alpha subunit 96.8 0.0021 7.1E-08 61.7 7.3 77 272-357 148-234 (340)
238 1azs_C GS-alpha; complex (lyas 96.5 0.0024 8.1E-08 62.7 5.6 78 272-358 204-291 (402)
239 3c8u_A Fructokinase; YP_612366 96.5 0.0023 8E-08 56.3 4.6 25 236-260 20-44 (208)
240 3ohm_A Guanine nucleotide-bind 96.5 0.0038 1.3E-07 59.6 6.3 77 272-357 154-240 (327)
241 1lvg_A Guanylate kinase, GMP k 96.3 0.0015 5.3E-08 57.3 2.5 22 239-260 5-26 (198)
242 1ls1_A Signal recognition part 96.3 0.011 3.6E-07 55.5 8.4 24 237-260 97-120 (295)
243 3tau_A Guanylate kinase, GMP k 96.3 0.0025 8.4E-08 56.3 3.8 26 237-262 7-32 (208)
244 1s96_A Guanylate kinase, GMP k 96.3 0.0017 5.9E-08 58.2 2.7 26 237-262 15-40 (219)
245 1zp6_A Hypothetical protein AT 96.2 0.0028 9.6E-08 54.4 3.7 24 238-261 9-32 (191)
246 1ex7_A Guanylate kinase; subst 96.2 0.0019 6.4E-08 56.7 2.3 39 240-278 3-43 (186)
247 1ye8_A Protein THEP1, hypothet 96.2 0.0023 7.8E-08 55.5 2.8 22 240-261 2-23 (178)
248 3tr0_A Guanylate kinase, GMP k 96.1 0.0028 9.5E-08 55.0 3.3 24 238-261 7-30 (205)
249 1znw_A Guanylate kinase, GMP k 96.0 0.0032 1.1E-07 55.4 3.1 25 238-262 20-44 (207)
250 4dzz_A Plasmid partitioning pr 96.0 0.0059 2E-07 52.9 4.6 51 284-346 75-125 (206)
251 3a00_A Guanylate kinase, GMP k 96.0 0.003 1E-07 54.6 2.6 22 240-261 3-24 (186)
252 1z6g_A Guanylate kinase; struc 95.9 0.0035 1.2E-07 55.9 2.8 25 238-262 23-47 (218)
253 2xtz_A Guanine nucleotide-bind 95.8 0.0051 1.8E-07 59.3 3.8 77 272-357 164-256 (354)
254 3tif_A Uncharacterized ABC tra 95.8 0.0057 1.9E-07 55.4 3.6 25 238-262 31-55 (235)
255 2pcj_A ABC transporter, lipopr 95.7 0.0052 1.8E-07 55.2 3.2 25 238-262 30-54 (224)
256 2j41_A Guanylate kinase; GMP, 95.7 0.0056 1.9E-07 53.1 3.3 25 238-262 6-30 (207)
257 3asz_A Uridine kinase; cytidin 95.6 0.0058 2E-07 53.5 3.1 24 238-261 6-29 (211)
258 2cbz_A Multidrug resistance-as 95.5 0.0077 2.6E-07 54.5 3.6 25 238-262 31-55 (237)
259 2onk_A Molybdate/tungstate ABC 95.5 0.0068 2.3E-07 55.1 3.2 23 239-261 25-47 (240)
260 1g6h_A High-affinity branched- 95.5 0.0066 2.3E-07 55.6 3.2 25 238-262 33-57 (257)
261 4gp7_A Metallophosphoesterase; 95.5 0.0066 2.3E-07 51.8 3.0 22 238-259 9-30 (171)
262 4eun_A Thermoresistant glucoki 95.5 0.0069 2.4E-07 52.8 3.2 23 238-260 29-51 (200)
263 1b0u_A Histidine permease; ABC 95.5 0.0079 2.7E-07 55.4 3.6 25 238-262 32-56 (262)
264 3gfo_A Cobalt import ATP-bindi 95.5 0.0071 2.4E-07 56.2 3.2 25 238-262 34-58 (275)
265 4g1u_C Hemin import ATP-bindin 95.5 0.0073 2.5E-07 55.8 3.2 24 238-261 37-60 (266)
266 2bbw_A Adenylate kinase 4, AK4 95.5 0.0084 2.9E-07 54.0 3.6 22 238-259 27-48 (246)
267 2qor_A Guanylate kinase; phosp 95.4 0.0076 2.6E-07 52.7 3.2 24 238-261 12-35 (204)
268 1mv5_A LMRA, multidrug resista 95.4 0.0084 2.9E-07 54.4 3.6 24 238-261 28-51 (243)
269 1kag_A SKI, shikimate kinase I 95.4 0.0066 2.3E-07 51.2 2.7 23 239-261 5-27 (173)
270 2ff7_A Alpha-hemolysin translo 95.4 0.0076 2.6E-07 55.0 3.2 25 238-262 35-59 (247)
271 1sgw_A Putative ABC transporte 95.4 0.007 2.4E-07 54.1 2.8 24 239-262 36-59 (214)
272 2pze_A Cystic fibrosis transme 95.4 0.0078 2.7E-07 54.2 3.2 24 238-261 34-57 (229)
273 2bdt_A BH3686; alpha-beta prot 95.4 0.0071 2.4E-07 52.0 2.8 21 240-260 4-24 (189)
274 1ji0_A ABC transporter; ATP bi 95.4 0.0079 2.7E-07 54.6 3.2 25 238-262 32-56 (240)
275 1htw_A HI0065; nucleotide-bind 95.4 0.0083 2.8E-07 51.0 3.1 25 238-262 33-57 (158)
276 2olj_A Amino acid ABC transpor 95.4 0.0092 3.2E-07 55.0 3.6 25 238-262 50-74 (263)
277 3lw7_A Adenylate kinase relate 95.4 0.0087 3E-07 49.8 3.1 20 239-258 2-21 (179)
278 2d2e_A SUFC protein; ABC-ATPas 95.4 0.0084 2.9E-07 54.7 3.3 24 238-261 29-52 (250)
279 3tqc_A Pantothenate kinase; bi 95.4 0.031 1.1E-06 53.0 7.3 24 237-260 91-114 (321)
280 2qi9_C Vitamin B12 import ATP- 95.3 0.0084 2.9E-07 54.8 3.2 25 238-262 26-50 (249)
281 1vpl_A ABC transporter, ATP-bi 95.3 0.0098 3.3E-07 54.6 3.6 25 238-262 41-65 (256)
282 2ghi_A Transport protein; mult 95.3 0.01 3.4E-07 54.6 3.6 24 238-261 46-69 (260)
283 2eyu_A Twitching motility prot 95.3 0.0089 3E-07 55.0 3.2 23 238-260 25-47 (261)
284 1rz3_A Hypothetical protein rb 95.3 0.017 5.9E-07 50.4 5.0 24 237-260 21-44 (201)
285 1np6_A Molybdopterin-guanine d 95.3 0.0085 2.9E-07 51.8 2.9 24 238-261 6-29 (174)
286 2zu0_C Probable ATP-dependent 95.3 0.01 3.6E-07 54.7 3.7 24 238-261 46-69 (267)
287 1knq_A Gluconate kinase; ALFA/ 95.3 0.01 3.6E-07 50.2 3.4 23 238-260 8-30 (175)
288 2ixe_A Antigen peptide transpo 95.3 0.011 3.6E-07 54.8 3.6 25 238-262 45-69 (271)
289 2ihy_A ABC transporter, ATP-bi 95.3 0.0091 3.1E-07 55.6 3.2 25 238-262 47-71 (279)
290 2yz2_A Putative ABC transporte 95.2 0.011 3.8E-07 54.5 3.6 25 238-262 33-57 (266)
291 2v9p_A Replication protein E1; 95.2 0.0092 3.2E-07 56.3 3.2 23 238-260 126-148 (305)
292 3uie_A Adenylyl-sulfate kinase 95.2 0.01 3.5E-07 51.7 3.2 25 237-261 24-48 (200)
293 2nq2_C Hypothetical ABC transp 95.2 0.0097 3.3E-07 54.5 3.1 24 239-262 32-55 (253)
294 2i3b_A HCR-ntpase, human cance 95.2 0.0081 2.8E-07 52.6 2.5 22 240-261 3-24 (189)
295 3t61_A Gluconokinase; PSI-biol 95.2 0.01 3.6E-07 51.5 3.1 23 238-260 18-40 (202)
296 1odf_A YGR205W, hypothetical 3 95.2 0.015 5.1E-07 54.4 4.4 23 237-259 30-52 (290)
297 3lnc_A Guanylate kinase, GMP k 95.2 0.0075 2.6E-07 53.8 2.2 24 238-261 27-51 (231)
298 3b85_A Phosphate starvation-in 95.1 0.0071 2.4E-07 53.8 1.9 23 239-261 23-45 (208)
299 3kb2_A SPBC2 prophage-derived 95.1 0.011 3.9E-07 49.4 3.2 21 240-260 3-23 (173)
300 1ly1_A Polynucleotide kinase; 95.1 0.012 4E-07 49.6 3.2 22 239-260 3-24 (181)
301 3aez_A Pantothenate kinase; tr 95.1 0.011 3.7E-07 56.0 3.3 24 237-260 89-112 (312)
302 3ec2_A DNA replication protein 95.0 0.018 6.1E-07 49.1 4.2 23 238-260 38-60 (180)
303 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.42 1.4E-05 42.5 13.4 23 238-260 39-61 (262)
304 2rhm_A Putative kinase; P-loop 95.0 0.015 5.1E-07 49.7 3.5 23 238-260 5-27 (193)
305 1qhx_A CPT, protein (chloramph 94.9 0.015 5.1E-07 49.2 3.3 22 239-260 4-25 (178)
306 3vaa_A Shikimate kinase, SK; s 94.9 0.014 4.8E-07 50.8 3.2 23 238-260 25-47 (199)
307 2pjz_A Hypothetical protein ST 94.9 0.013 4.6E-07 53.9 3.2 25 238-262 30-54 (263)
308 4a74_A DNA repair and recombin 94.9 0.012 4.2E-07 51.6 2.8 23 238-260 25-47 (231)
309 1cke_A CK, MSSA, protein (cyti 94.9 0.013 4.6E-07 51.5 3.0 22 239-260 6-27 (227)
310 4e22_A Cytidylate kinase; P-lo 94.8 0.018 6.2E-07 52.3 3.9 23 237-259 26-48 (252)
311 2f1r_A Molybdopterin-guanine d 94.8 0.0064 2.2E-07 52.4 0.8 23 239-261 3-25 (171)
312 3nh6_A ATP-binding cassette SU 94.8 0.01 3.5E-07 56.0 2.3 24 238-261 80-103 (306)
313 2qt1_A Nicotinamide riboside k 94.8 0.018 6E-07 50.3 3.7 25 237-261 20-44 (207)
314 2bbs_A Cystic fibrosis transme 94.8 0.016 5.6E-07 54.2 3.6 24 238-261 64-87 (290)
315 2if2_A Dephospho-COA kinase; a 94.8 0.013 4.5E-07 50.8 2.8 22 239-260 2-23 (204)
316 1jjv_A Dephospho-COA kinase; P 94.8 0.016 5.6E-07 50.3 3.3 22 239-260 3-24 (206)
317 2jeo_A Uridine-cytidine kinase 94.8 0.016 5.4E-07 52.3 3.2 23 238-260 25-47 (245)
318 1nks_A Adenylate kinase; therm 94.7 0.016 5.6E-07 49.2 3.2 22 239-260 2-23 (194)
319 1kht_A Adenylate kinase; phosp 94.7 0.018 6.2E-07 48.9 3.4 22 239-260 4-25 (192)
320 2yvu_A Probable adenylyl-sulfa 94.7 0.022 7.6E-07 48.7 3.9 24 237-260 12-35 (186)
321 3tui_C Methionine import ATP-b 94.7 0.019 6.4E-07 55.6 3.7 25 238-262 54-78 (366)
322 2jaq_A Deoxyguanosine kinase; 94.7 0.018 6.1E-07 49.5 3.2 21 240-260 2-22 (205)
323 3trf_A Shikimate kinase, SK; a 94.6 0.02 6.8E-07 48.7 3.3 23 238-260 5-27 (185)
324 1gvn_B Zeta; postsegregational 94.6 0.04 1.4E-06 51.2 5.6 24 237-260 32-55 (287)
325 2wwf_A Thymidilate kinase, put 94.5 0.026 9E-07 49.0 4.1 24 237-260 9-32 (212)
326 3zvl_A Bifunctional polynucleo 94.5 0.067 2.3E-06 52.4 7.4 25 237-261 257-281 (416)
327 2ehv_A Hypothetical protein PH 94.5 0.018 6.3E-07 51.2 3.1 22 238-259 30-51 (251)
328 2gza_A Type IV secretion syste 94.5 0.018 6.1E-07 55.4 3.2 24 238-261 175-198 (361)
329 1y63_A LMAJ004144AAA protein; 94.5 0.023 7.9E-07 48.8 3.6 25 237-261 9-33 (184)
330 2pt7_A CAG-ALFA; ATPase, prote 94.5 0.017 5.7E-07 55.0 2.7 23 239-261 172-194 (330)
331 1jbk_A CLPB protein; beta barr 94.5 0.045 1.5E-06 45.7 5.2 24 238-261 43-66 (195)
332 3cm0_A Adenylate kinase; ATP-b 94.4 0.021 7.1E-07 48.6 3.1 23 238-260 4-26 (186)
333 2kjq_A DNAA-related protein; s 94.4 0.023 7.8E-07 47.5 3.2 55 238-298 36-97 (149)
334 1sq5_A Pantothenate kinase; P- 94.4 0.02 7E-07 53.7 3.2 24 237-260 79-102 (308)
335 1uf9_A TT1252 protein; P-loop, 94.4 0.026 8.9E-07 48.5 3.6 26 236-261 6-31 (203)
336 2c95_A Adenylate kinase 1; tra 94.4 0.026 9E-07 48.2 3.6 23 238-260 9-31 (196)
337 2plr_A DTMP kinase, probable t 94.4 0.024 8.4E-07 49.0 3.4 23 238-260 4-26 (213)
338 2ewv_A Twitching motility prot 94.3 0.021 7.1E-07 55.3 3.1 23 238-260 136-158 (372)
339 1nij_A Hypothetical protein YJ 94.3 0.016 5.5E-07 54.6 2.3 24 238-261 4-27 (318)
340 3jvv_A Twitching mobility prot 94.3 0.022 7.6E-07 54.8 3.2 22 239-260 124-145 (356)
341 1z47_A CYSA, putative ABC-tran 94.3 0.023 7.8E-07 54.8 3.3 25 238-262 41-65 (355)
342 3fvq_A Fe(3+) IONS import ATP- 94.3 0.026 9E-07 54.4 3.7 25 238-262 30-54 (359)
343 3b9p_A CG5977-PA, isoform A; A 94.3 0.18 6.1E-06 46.2 9.3 25 237-261 53-77 (297)
344 1nn5_A Similar to deoxythymidy 94.2 0.029 9.9E-07 48.7 3.6 23 238-260 9-31 (215)
345 1xjc_A MOBB protein homolog; s 94.2 0.027 9.3E-07 48.5 3.3 23 238-260 4-26 (169)
346 2yyz_A Sugar ABC transporter, 94.2 0.028 9.6E-07 54.2 3.7 25 238-262 29-53 (359)
347 3iij_A Coilin-interacting nucl 94.2 0.028 9.5E-07 47.7 3.3 22 238-259 11-32 (180)
348 2vp4_A Deoxynucleoside kinase; 94.2 0.023 7.8E-07 50.8 2.8 25 237-261 19-43 (230)
349 2v54_A DTMP kinase, thymidylat 94.1 0.031 1.1E-06 48.2 3.6 24 238-261 4-27 (204)
350 1fnn_A CDC6P, cell division co 94.1 0.16 5.4E-06 48.0 8.9 22 239-260 45-66 (389)
351 2it1_A 362AA long hypothetical 94.1 0.029 9.9E-07 54.2 3.7 25 238-262 29-53 (362)
352 3a4m_A L-seryl-tRNA(SEC) kinas 94.1 0.028 9.6E-07 51.2 3.4 23 238-260 4-26 (260)
353 1tev_A UMP-CMP kinase; ploop, 94.1 0.029 9.8E-07 47.8 3.2 23 238-260 3-25 (196)
354 1g29_1 MALK, maltose transport 94.1 0.026 8.9E-07 54.7 3.3 24 239-262 30-53 (372)
355 3rlf_A Maltose/maltodextrin im 94.0 0.031 1.1E-06 54.4 3.7 25 238-262 29-53 (381)
356 1zak_A Adenylate kinase; ATP:A 94.0 0.03 1E-06 49.4 3.3 24 237-260 4-27 (222)
357 1zd8_A GTP:AMP phosphotransfer 94.0 0.03 1E-06 49.7 3.3 23 238-260 7-29 (227)
358 2p5t_B PEZT; postsegregational 94.0 0.043 1.5E-06 49.7 4.4 24 237-260 31-54 (253)
359 2cdn_A Adenylate kinase; phosp 93.9 0.037 1.3E-06 47.9 3.7 23 238-260 20-42 (201)
360 1v43_A Sugar-binding transport 93.9 0.033 1.1E-06 54.0 3.7 25 238-262 37-61 (372)
361 2x8a_A Nuclear valosin-contain 93.9 0.055 1.9E-06 49.9 5.0 21 241-261 47-67 (274)
362 1lw7_A Transcriptional regulat 93.9 0.02 6.8E-07 54.9 2.1 24 238-261 170-193 (365)
363 4b4t_L 26S protease subunit RP 93.9 0.44 1.5E-05 47.0 11.8 23 238-260 215-237 (437)
364 3h4m_A Proteasome-activating n 93.9 0.18 6.2E-06 45.8 8.5 24 238-261 51-74 (285)
365 2pez_A Bifunctional 3'-phospho 93.9 0.031 1.1E-06 47.5 3.0 23 238-260 5-27 (179)
366 1ukz_A Uridylate kinase; trans 93.9 0.044 1.5E-06 47.4 4.1 24 237-260 14-37 (203)
367 1xwi_A SKD1 protein; VPS4B, AA 93.9 0.27 9.3E-06 46.2 9.9 24 238-261 45-68 (322)
368 1gtv_A TMK, thymidylate kinase 93.8 0.015 5.2E-07 50.6 1.0 21 240-260 2-22 (214)
369 1aky_A Adenylate kinase; ATP:A 93.8 0.036 1.2E-06 48.8 3.5 23 238-260 4-26 (220)
370 2oap_1 GSPE-2, type II secreti 93.8 0.029 1E-06 56.6 3.1 23 239-261 261-283 (511)
371 2bwj_A Adenylate kinase 5; pho 93.8 0.037 1.3E-06 47.4 3.3 22 239-260 13-34 (199)
372 3fb4_A Adenylate kinase; psych 93.7 0.035 1.2E-06 48.5 3.2 20 240-259 2-21 (216)
373 2pbr_A DTMP kinase, thymidylat 93.6 0.04 1.4E-06 46.9 3.3 21 240-260 2-22 (195)
374 1p9r_A General secretion pathw 93.6 0.035 1.2E-06 54.7 3.2 23 238-260 167-189 (418)
375 3d31_A Sulfate/molybdate ABC t 93.6 0.027 9.3E-07 54.1 2.4 25 238-262 26-50 (348)
376 2vli_A Antibiotic resistance p 93.6 0.027 9.1E-07 47.7 2.1 23 238-260 5-27 (183)
377 2pt5_A Shikimate kinase, SK; a 93.6 0.041 1.4E-06 45.9 3.2 21 240-260 2-22 (168)
378 3gd7_A Fusion complex of cysti 93.6 0.042 1.5E-06 53.6 3.7 24 238-261 47-70 (390)
379 2iyv_A Shikimate kinase, SK; t 93.5 0.037 1.2E-06 47.1 2.8 22 239-260 3-24 (184)
380 1qf9_A UMP/CMP kinase, protein 93.5 0.042 1.4E-06 46.6 3.3 22 239-260 7-28 (194)
381 3kta_A Chromosome segregation 93.5 0.039 1.3E-06 46.9 3.0 22 239-260 27-48 (182)
382 3dl0_A Adenylate kinase; phosp 93.5 0.041 1.4E-06 48.1 3.2 21 240-260 2-22 (216)
383 1via_A Shikimate kinase; struc 93.5 0.038 1.3E-06 46.7 2.9 21 240-260 6-26 (175)
384 4b4t_K 26S protease regulatory 93.5 0.4 1.4E-05 47.2 10.6 23 238-260 206-228 (428)
385 1m7g_A Adenylylsulfate kinase; 93.5 0.041 1.4E-06 48.2 3.1 23 238-260 25-47 (211)
386 1vht_A Dephospho-COA kinase; s 93.4 0.049 1.7E-06 47.7 3.6 23 238-260 4-26 (218)
387 2w0m_A SSO2452; RECA, SSPF, un 93.4 0.037 1.3E-06 48.4 2.7 23 238-260 23-45 (235)
388 1oxx_K GLCV, glucose, ABC tran 93.4 0.025 8.5E-07 54.4 1.7 25 238-262 31-55 (353)
389 2p65_A Hypothetical protein PF 93.4 0.069 2.4E-06 44.6 4.3 23 238-260 43-65 (187)
390 1ixz_A ATP-dependent metallopr 93.4 0.035 1.2E-06 50.0 2.6 21 241-261 52-72 (254)
391 1tue_A Replication protein E1; 93.4 0.071 2.4E-06 47.5 4.5 39 218-260 42-80 (212)
392 2z0h_A DTMP kinase, thymidylat 93.3 0.048 1.6E-06 46.6 3.2 21 240-260 2-22 (197)
393 2npi_A Protein CLP1; CLP1-PCF1 93.3 0.037 1.3E-06 55.1 2.8 24 238-261 138-161 (460)
394 1e6c_A Shikimate kinase; phosp 93.3 0.045 1.5E-06 45.8 2.9 22 239-260 3-24 (173)
395 1cr0_A DNA primase/helicase; R 93.3 0.045 1.5E-06 50.5 3.2 23 238-260 35-57 (296)
396 3ozx_A RNAse L inhibitor; ATP 93.2 0.054 1.8E-06 55.0 3.9 32 230-262 18-49 (538)
397 1yqt_A RNAse L inhibitor; ATP- 93.2 0.05 1.7E-06 55.2 3.7 26 237-262 46-71 (538)
398 1e4v_A Adenylate kinase; trans 93.1 0.051 1.7E-06 47.6 3.2 21 240-260 2-22 (214)
399 3b60_A Lipid A export ATP-bind 93.1 0.052 1.8E-06 55.5 3.6 22 240-261 371-392 (582)
400 2ze6_A Isopentenyl transferase 93.0 0.045 1.5E-06 49.8 2.8 21 240-260 3-23 (253)
401 3nwj_A ATSK2; P loop, shikimat 93.0 0.046 1.6E-06 49.9 2.8 22 239-260 49-70 (250)
402 2cvh_A DNA repair and recombin 93.0 0.055 1.9E-06 47.0 3.2 23 238-260 20-42 (220)
403 4b4t_I 26S protease regulatory 93.0 0.82 2.8E-05 45.0 11.9 23 238-260 216-238 (437)
404 2f6r_A COA synthase, bifunctio 93.0 0.074 2.5E-06 49.1 4.2 24 236-259 73-96 (281)
405 4b4t_H 26S protease regulatory 93.0 0.8 2.7E-05 45.5 11.8 23 238-260 243-265 (467)
406 3tlx_A Adenylate kinase 2; str 92.9 0.06 2.1E-06 48.5 3.5 24 237-260 28-51 (243)
407 3be4_A Adenylate kinase; malar 92.9 0.048 1.6E-06 48.0 2.7 23 238-260 5-27 (217)
408 3b5x_A Lipid A export ATP-bind 92.9 0.055 1.9E-06 55.3 3.6 23 239-261 370-392 (582)
409 3qf7_A RAD50; ABC-ATPase, ATPa 92.8 0.052 1.8E-06 52.2 3.0 22 238-259 23-44 (365)
410 3j16_B RLI1P; ribosome recycli 92.7 0.064 2.2E-06 55.3 3.7 26 237-262 102-127 (608)
411 2xb4_A Adenylate kinase; ATP-b 92.7 0.064 2.2E-06 47.5 3.2 21 240-260 2-22 (223)
412 3euj_A Chromosome partition pr 92.7 0.051 1.7E-06 54.5 2.8 22 239-260 30-51 (483)
413 1ak2_A Adenylate kinase isoenz 92.6 0.074 2.5E-06 47.3 3.6 24 237-260 15-38 (233)
414 2obl_A ESCN; ATPase, hydrolase 92.6 0.053 1.8E-06 52.0 2.8 24 238-261 71-94 (347)
415 1iy2_A ATP-dependent metallopr 92.6 0.051 1.8E-06 49.7 2.6 21 241-261 76-96 (278)
416 2yl4_A ATP-binding cassette SU 92.6 0.049 1.7E-06 55.8 2.6 22 240-261 372-393 (595)
417 1svm_A Large T antigen; AAA+ f 92.5 0.063 2.2E-06 52.1 3.2 23 238-260 169-191 (377)
418 1in4_A RUVB, holliday junction 92.5 0.053 1.8E-06 51.2 2.6 23 239-261 52-74 (334)
419 1zuh_A Shikimate kinase; alpha 92.5 0.072 2.5E-06 44.6 3.1 22 239-260 8-29 (168)
420 3bk7_A ABC transporter ATP-bin 92.4 0.071 2.4E-06 55.0 3.6 26 237-262 116-141 (607)
421 2w58_A DNAI, primosome compone 92.4 0.17 5.7E-06 43.6 5.5 22 239-260 55-76 (202)
422 4b4t_M 26S protease regulatory 92.4 0.27 9.3E-06 48.5 7.6 23 238-260 215-237 (434)
423 1n0w_A DNA repair protein RAD5 92.4 0.061 2.1E-06 47.5 2.7 23 238-260 24-46 (243)
424 3qf4_B Uncharacterized ABC tra 92.4 0.056 1.9E-06 55.5 2.8 23 239-261 382-404 (598)
425 1f2t_A RAD50 ABC-ATPase; DNA d 92.4 0.072 2.4E-06 44.4 3.0 22 238-259 23-44 (149)
426 3eie_A Vacuolar protein sortin 92.4 0.76 2.6E-05 42.8 10.4 25 237-261 50-74 (322)
427 4eaq_A DTMP kinase, thymidylat 92.3 0.085 2.9E-06 47.2 3.6 24 237-260 25-48 (229)
428 3ozx_A RNAse L inhibitor; ATP 92.3 0.067 2.3E-06 54.3 3.2 25 238-262 294-318 (538)
429 4a82_A Cystic fibrosis transme 92.2 0.052 1.8E-06 55.5 2.3 23 239-261 368-390 (578)
430 3bos_A Putative DNA replicatio 92.1 0.094 3.2E-06 45.8 3.6 23 238-260 52-74 (242)
431 1yqt_A RNAse L inhibitor; ATP- 92.1 0.074 2.5E-06 53.9 3.2 25 238-262 312-336 (538)
432 3qf4_A ABC transporter, ATP-bi 92.1 0.064 2.2E-06 55.0 2.7 22 240-261 371-392 (587)
433 3d8b_A Fidgetin-like protein 1 92.0 0.39 1.3E-05 45.7 8.0 24 237-260 116-139 (357)
434 1q3t_A Cytidylate kinase; nucl 92.0 0.089 3.1E-06 46.9 3.3 24 237-260 15-38 (236)
435 4b4t_J 26S protease regulatory 92.0 1.4 4.7E-05 43.0 12.0 22 239-260 183-204 (405)
436 1uj2_A Uridine-cytidine kinase 91.9 0.095 3.2E-06 47.3 3.4 24 237-260 21-44 (252)
437 3r20_A Cytidylate kinase; stru 91.9 0.094 3.2E-06 47.4 3.3 22 238-259 9-30 (233)
438 1zcb_A G alpha I/13; GTP-bindi 91.8 0.094 3.2E-06 50.5 3.5 24 236-259 31-54 (362)
439 1sxj_E Activator 1 40 kDa subu 91.8 0.12 4.2E-06 48.5 4.2 21 240-260 38-58 (354)
440 1ltq_A Polynucleotide kinase; 91.8 0.092 3.2E-06 48.3 3.2 22 239-260 3-24 (301)
441 3bk7_A ABC transporter ATP-bin 91.8 0.085 2.9E-06 54.4 3.2 25 238-262 382-406 (607)
442 3cwq_A Para family chromosome 91.8 0.26 8.9E-06 43.1 6.0 35 284-329 67-102 (209)
443 1lv7_A FTSH; alpha/beta domain 91.8 0.097 3.3E-06 47.0 3.3 22 239-260 46-67 (257)
444 3umf_A Adenylate kinase; rossm 91.7 0.11 3.8E-06 46.4 3.6 24 237-260 28-51 (217)
445 3vfd_A Spastin; ATPase, microt 91.7 0.38 1.3E-05 46.2 7.6 25 237-261 147-171 (389)
446 2grj_A Dephospho-COA kinase; T 91.6 0.098 3.3E-06 45.7 3.0 25 237-261 11-35 (192)
447 2chg_A Replication factor C sm 91.6 0.19 6.4E-06 42.9 4.8 21 240-260 40-60 (226)
448 2dpy_A FLII, flagellum-specifi 91.6 0.081 2.8E-06 52.3 2.8 24 238-261 157-180 (438)
449 1njg_A DNA polymerase III subu 91.5 0.21 7.1E-06 43.1 5.1 22 239-260 46-67 (250)
450 3ake_A Cytidylate kinase; CMP 91.4 0.12 4E-06 44.5 3.3 21 240-260 4-24 (208)
451 3j16_B RLI1P; ribosome recycli 91.4 0.099 3.4E-06 53.9 3.2 23 240-262 380-402 (608)
452 3sr0_A Adenylate kinase; phosp 91.2 0.12 4.1E-06 45.7 3.2 21 240-260 2-22 (206)
453 1bif_A 6-phosphofructo-2-kinas 91.1 0.12 4E-06 51.3 3.4 24 237-260 38-61 (469)
454 1p5z_B DCK, deoxycytidine kina 91.1 0.083 2.9E-06 47.9 2.1 25 237-261 23-47 (263)
455 1nlf_A Regulatory protein REPA 91.0 0.11 3.6E-06 47.6 2.7 24 237-260 29-52 (279)
456 2ocp_A DGK, deoxyguanosine kin 90.9 0.14 4.8E-06 45.7 3.4 23 238-260 2-24 (241)
457 3n70_A Transport activator; si 90.8 0.095 3.2E-06 43.1 2.0 24 238-261 24-47 (145)
458 3syl_A Protein CBBX; photosynt 90.8 0.11 3.8E-06 47.8 2.6 24 237-260 66-89 (309)
459 2qby_A CDC6 homolog 1, cell di 90.7 0.16 5.6E-06 47.6 3.8 24 237-260 44-67 (386)
460 4f4c_A Multidrug resistance pr 90.7 0.085 2.9E-06 59.2 2.1 21 240-260 1107-1127(1321)
461 3qks_A DNA double-strand break 90.6 0.13 4.6E-06 45.0 3.0 23 237-259 22-44 (203)
462 3a8t_A Adenylate isopentenyltr 90.4 0.18 6.2E-06 48.1 3.8 24 238-261 40-63 (339)
463 3cr8_A Sulfate adenylyltranfer 90.4 0.086 2.9E-06 53.7 1.6 25 237-261 368-392 (552)
464 1a7j_A Phosphoribulokinase; tr 90.3 0.09 3.1E-06 48.9 1.6 24 237-260 4-27 (290)
465 4fcw_A Chaperone protein CLPB; 90.2 0.31 1E-05 44.7 5.2 22 239-260 48-69 (311)
466 3pfi_A Holliday junction ATP-d 90.2 0.16 5.3E-06 47.5 3.2 24 238-261 55-78 (338)
467 3bfv_A CAPA1, CAPB2, membrane 90.1 2.1 7.1E-05 39.1 10.7 23 237-259 81-104 (271)
468 1qhl_A Protein (cell division 90.1 0.029 1E-06 50.6 -1.9 21 240-260 29-49 (227)
469 2fna_A Conserved hypothetical 90.0 0.27 9.1E-06 45.6 4.6 22 239-260 31-52 (357)
470 2qmh_A HPR kinase/phosphorylas 90.0 0.19 6.5E-06 44.5 3.4 25 237-261 33-57 (205)
471 2iw3_A Elongation factor 3A; a 89.9 0.15 5.2E-06 55.3 3.2 24 240-263 463-486 (986)
472 3crm_A TRNA delta(2)-isopenten 89.8 0.2 6.9E-06 47.5 3.6 22 239-260 6-27 (323)
473 2iw3_A Elongation factor 3A; a 89.7 0.1 3.4E-06 56.7 1.6 22 240-261 701-722 (986)
474 3t15_A Ribulose bisphosphate c 89.7 0.21 7.2E-06 46.2 3.6 22 239-260 37-58 (293)
475 2dr3_A UPF0273 protein PH0284; 89.7 0.18 6.2E-06 44.4 3.1 22 238-259 23-44 (247)
476 3cf0_A Transitional endoplasmi 89.6 0.19 6.5E-06 46.6 3.2 24 238-261 49-72 (301)
477 4aby_A DNA repair protein RECN 89.5 0.064 2.2E-06 51.9 -0.1 20 240-259 62-81 (415)
478 4f4c_A Multidrug resistance pr 89.5 0.19 6.3E-06 56.4 3.6 22 240-261 446-467 (1321)
479 2qp9_X Vacuolar protein sortin 89.5 0.58 2E-05 44.5 6.6 24 238-261 84-107 (355)
480 3exa_A TRNA delta(2)-isopenten 89.3 0.22 7.5E-06 47.2 3.5 24 238-261 3-26 (322)
481 3qkt_A DNA double-strand break 89.2 0.19 6.5E-06 47.6 3.0 24 236-259 21-44 (339)
482 1u0j_A DNA replication protein 89.2 0.74 2.5E-05 42.4 6.8 76 218-298 87-162 (267)
483 3g5u_A MCG1178, multidrug resi 89.1 0.19 6.3E-06 56.3 3.2 22 240-261 418-439 (1284)
484 2qgz_A Helicase loader, putati 89.1 0.42 1.4E-05 44.7 5.2 23 238-260 152-174 (308)
485 2axn_A 6-phosphofructo-2-kinas 89.1 0.23 8E-06 50.1 3.7 25 236-260 33-57 (520)
486 2v1u_A Cell division control p 89.0 0.28 9.7E-06 46.0 4.0 24 237-260 43-66 (387)
487 3d3q_A TRNA delta(2)-isopenten 89.0 0.21 7.3E-06 47.7 3.2 22 239-260 8-29 (340)
488 3la6_A Tyrosine-protein kinase 89.0 1.8 6.1E-05 39.9 9.4 50 285-344 202-251 (286)
489 2qen_A Walker-type ATPase; unk 88.9 0.31 1.1E-05 45.1 4.2 23 239-261 32-54 (350)
490 3foz_A TRNA delta(2)-isopenten 88.9 0.27 9.3E-06 46.4 3.8 23 238-260 10-32 (316)
491 1pzn_A RAD51, DNA repair and r 88.9 0.19 6.4E-06 48.0 2.7 24 238-261 131-154 (349)
492 2zan_A Vacuolar protein sortin 88.8 0.49 1.7E-05 46.5 5.7 24 238-261 167-190 (444)
493 2h92_A Cytidylate kinase; ross 88.8 0.23 7.7E-06 43.3 3.0 22 239-260 4-25 (219)
494 3ld9_A DTMP kinase, thymidylat 88.7 0.28 9.7E-06 43.9 3.6 24 237-260 20-43 (223)
495 1l8q_A Chromosomal replication 88.6 0.2 6.9E-06 46.6 2.7 23 238-260 37-59 (324)
496 2ga8_A Hypothetical 39.9 kDa p 88.6 0.25 8.5E-06 47.5 3.3 23 238-260 24-46 (359)
497 2qby_B CDC6 homolog 3, cell di 88.5 0.32 1.1E-05 45.9 4.1 23 238-260 45-67 (384)
498 3pxg_A Negative regulator of g 88.5 0.38 1.3E-05 47.6 4.8 23 238-260 201-223 (468)
499 1w1w_A Structural maintenance 88.4 0.24 8.4E-06 48.3 3.2 23 238-260 26-48 (430)
500 1ofh_A ATP-dependent HSL prote 88.3 0.27 9.1E-06 44.9 3.3 23 238-260 50-72 (310)
No 1
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.5e-44 Score=347.98 Aligned_cols=285 Identities=29% Similarity=0.562 Sum_probs=256.5
Q ss_pred ccccccccCCChHHHHHHHhccccccCCccccchhhhHHHHHHHHhhhhhhHHHHHHHHHhHhhhCCCCCCCchhHHHHH
Q psy15712 74 YNFKKIAVVPTAKEFVDIMLSKTQRKTPTVIHKQYKISRIRSFYMRKIKYTQSNFHERLSQIIQEFPKLDNIHPFYADLM 153 (358)
Q Consensus 74 ~~f~~ip~v~ta~elid~~l~ra~r~~~t~i~~~~~i~~~r~~~~~~l~~~~~~~~~~l~~i~~~fp~~d~~~pfy~~ll 153 (358)
|+|++||+||||+||+|++||||+|++|+++++++++.|+|++|+++|+.+++.++++|.+++..||.+++.||||.+++
T Consensus 3 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~p~~~~l~ 82 (357)
T 2e87_A 3 NPFERMPTVLTADELIDKAFRRAEKAASSFKPRGNKVKKARLREELRVRTVSNVVRDNLRKVLERTPGLSTLPKFYQELV 82 (357)
T ss_dssp CTTTTCCCCCCHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCGGGSCHHHHHHH
T ss_pred CccccCCCCCCHHHHHHHHHHHHhhccCCCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCC
Q psy15712 154 NILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLYRCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPS 233 (358)
Q Consensus 154 ~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~~~~~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~ 233 (358)
+++++..++..+|.++.++......++..|.+.++.+.+...+...++.+.+++..++.+....+..+...++.+++.+.
T Consensus 83 ~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 162 (357)
T 2e87_A 83 DVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPV 162 (357)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999998988888888888888888888877666677778888899999999999999888888889999999888888
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 234 IDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 234 ~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
.+...++|+++|+||||||||+|+|++..+.+++++++|.+...+.+...+..+++|||||+.+.+....+.++.++..+
T Consensus 163 ~~~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 163 VDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp CCSSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 77788999999999999999999999998878889999999999988888889999999999887766666666666556
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
+...+|++++|+|+++.++.+.+.+..++..+...+.++|+++|+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~ 287 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVI 287 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 666679999999999988888888888998887765589999873
No 2
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.84 E-value=2.7e-20 Score=182.09 Aligned_cols=222 Identities=18% Similarity=0.135 Sum_probs=128.9
Q ss_pred HhhhhhhHHHHHHHHHhHhhhC-CCCCCCchhHHHHHHHHhhcccchhhhhHHHHHHhh--HHHHHHHHHHHHhccCChH
Q psy15712 118 MRKIKYTQSNFHERLSQIIQEF-PKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARHL--IDNVAKDYLRLMKYADSLY 194 (358)
Q Consensus 118 ~~~l~~~~~~~~~~l~~i~~~f-p~~d~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~~--~~~l~~~~~~~~k~~~~~~ 194 (358)
...|+++|..+.++..+ . +++|++ ..+++||..++.++++..|+..|++. .+++ ..|..+.+...+..
T Consensus 63 ~~~l~p~q~~~l~~~~~----~~~v~dr~----~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl-~~~~~l~~~~~~i~ 133 (364)
T 2qtf_A 63 FEQLKPRHFINIRRELK----GKEVLDKI----LLLLEIFALHAGSKEAKMQIELARLKYELPII-KETYTKSKIGEQQG 133 (364)
T ss_dssp SSCCCHHHHHHHHHHHT----TCEEECHH----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHC-----------
T ss_pred CCCCCHHHHHHHHHHhC----CCceeehH----hHHHHHHHhhCcccchhHHHHHHHHhhhchhh-hhhhHHHHhcCCCC
Confidence 35578888888777643 3 678888 99999999999999999999999874 4566 78877776543221
Q ss_pred -------HHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccC
Q psy15712 195 -------RCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQP 267 (358)
Q Consensus 195 -------~~~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~ 267 (358)
.+...++...+++..+..++.. +...+... +..+...+.+.|+++|+||||||||+|+|++....+++
T Consensus 134 ~~g~ge~~~e~~~~~~~~~i~~l~~~l~~----~~~~r~~~-r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~ 208 (364)
T 2qtf_A 134 PLGAGTYGVESTIKFYKRRINKLMKELES----IKIFKEKS-IESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDT 208 (364)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHH----HHC--------------CCEEEEECBTTSSHHHHHHHHHCC------
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccC
Confidence 1222244555556555444321 11111111 11223334567999999999999999999999887889
Q ss_pred CCcceeeeEEEEEEecCceEEEEeCCCCCCC-CcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHH----HHHH
Q psy15712 268 YAFTTKSLYVGHTDYKYLRWQVIDTPGILDH-SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQ----IGLF 342 (358)
Q Consensus 268 ~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~-~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q----~~ll 342 (358)
.+++|.++..+.+.+++..+.+|||||+... +....+.+ ..+...+.. +|++++|+|++++... ..++ .+++
T Consensus 209 ~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f-~~tl~~~~~-aD~il~VvD~s~~~~~-~~~~~~~~~~~L 285 (364)
T 2qtf_A 209 KLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF-FVTLSEAKY-SDALILVIDSTFSENL-LIETLQSSFEIL 285 (364)
T ss_dssp -----CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH-HHHHHGGGG-SSEEEEEEETTSCHHH-HHHHHHHHHHHH
T ss_pred CcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH-HHHHHHHHh-CCEEEEEEECCCCcch-HHHHHHHHHHHH
Confidence 9999999999999999999999999998765 33222221 122223333 4999999999875310 1222 2344
Q ss_pred HHHcccCCCCeEEEeC
Q psy15712 343 KSIRPLFNNKVGPLEY 358 (358)
Q Consensus 343 ~~i~~~f~~kPvilvf 358 (358)
..+.. .++|+++|+
T Consensus 286 ~~l~~--~~~p~ilV~ 299 (364)
T 2qtf_A 286 REIGV--SGKPILVTL 299 (364)
T ss_dssp HHHTC--CSCCEEEEE
T ss_pred HHhCc--CCCCEEEEE
Confidence 44422 368888874
No 3
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.77 E-value=4.8e-18 Score=154.17 Aligned_cols=134 Identities=56% Similarity=0.914 Sum_probs=99.2
Q ss_pred HHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchH
Q psy15712 224 VRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDR 303 (358)
Q Consensus 224 ~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~ 303 (358)
+...+.++|..++..++|+++|.+|||||||+|+|++..+.+.+++++|.+.......+.+..+++|||||+.+.+...+
T Consensus 15 ~~~~~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 94 (228)
T 2qu8_A 15 ENLYFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENR 94 (228)
T ss_dssp -------CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGC
T ss_pred hhheeccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchh
Confidence 34455678888888999999999999999999999998877788899999999988888888999999999987654444
Q ss_pred HHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 304 NIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 304 ~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
..++......+...+|++++|+|+++..++.......++..+...+.++|+++|
T Consensus 95 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv 148 (228)
T 2qu8_A 95 NTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIG 148 (228)
T ss_dssp CHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEE
T ss_pred hhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEE
Confidence 434333444444556999999999998877766667888888776668999887
No 4
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.2e-18 Score=166.89 Aligned_cols=93 Identities=28% Similarity=0.472 Sum_probs=77.5
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
.+..+|++||+||||||||+|+|++.++.++++||||++++.+.+.+.+.+++++||||+...+..... +..+++..++
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~-~g~~~l~~i~ 148 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRG-RGKQVIAVAR 148 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----C-HHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhH-HHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999876554433 2344556666
Q ss_pred hcccEEEEEEeCCCC
Q psy15712 316 HLRAAVLYFIDISEQ 330 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~ 330 (358)
.. |++++|+|++++
T Consensus 149 ~a-d~il~vvD~~~p 162 (376)
T 4a9a_A 149 TC-NLLFIILDVNKP 162 (376)
T ss_dssp HC-SEEEEEEETTSH
T ss_pred hc-CccccccccCcc
Confidence 66 999999999874
No 5
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.65 E-value=2.9e-15 Score=130.02 Aligned_cols=116 Identities=22% Similarity=0.251 Sum_probs=83.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
..+|+++|.+|||||||+|+|++... .+++++++|.+...+.+.+++..+++|||||+.+............+..++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 83 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHh
Confidence 46899999999999999999998774 47788999999988888888889999999999654321111101112234555
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
. |++++|+|+++...+... .++..+.... .++|+++|
T Consensus 84 a-d~~i~v~D~~~~~s~~~~---~~~~~~~~~~~~~~p~ilv 121 (172)
T 2gj8_A 84 A-DRVLFMVDGTTTDAVDPA---EIWPEFIARLPAKLPITVV 121 (172)
T ss_dssp C-SEEEEEEETTTCCCCSHH---HHCHHHHHHSCTTCCEEEE
T ss_pred C-CEEEEEEECCCCCCHHHH---HHHHHHHHhcccCCCEEEE
Confidence 5 999999999987666533 3333333221 36898887
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.64 E-value=1.9e-15 Score=143.88 Aligned_cols=116 Identities=24% Similarity=0.326 Sum_probs=86.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...|+++|.||||||||+|+|++.++. +++.|+||++...+....++.++++|||||+.+........+...+..+++.
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhc
Confidence 457999999999999999999998875 6788999999888888888889999999999865332222233344455555
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
. |++++|+|+++.... . ...++..+.....++|+++|
T Consensus 87 a-d~il~VvD~~~~~~~--~-~~~i~~~l~~~~~~~p~ilV 123 (301)
T 1wf3_A 87 V-NAVVWVVDLRHPPTP--E-DELVARALKPLVGKVPILLV 123 (301)
T ss_dssp C-SEEEEEEETTSCCCH--H-HHHHHHHHGGGTTTSCEEEE
T ss_pred C-CEEEEEEECCCCCCh--H-HHHHHHHHHhhcCCCCEEEE
Confidence 5 999999999886432 2 22334455544457898886
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.63 E-value=2.5e-15 Score=143.37 Aligned_cols=118 Identities=27% Similarity=0.310 Sum_probs=90.4
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEec-CceEEEEeCCCCCCCC--cchHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYK-YLRWQVIDTPGILDHS--LEDRNIIEMQAV 311 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~-~~~~~liDTPG~~~~~--~~~~~~ie~~~~ 311 (358)
+....|+++|.||||||||+|+|++.++. +++.++||++...+....+ +.++.+|||||+.+.. ......+...+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 35668999999999999999999999875 7889999999999998888 8899999999998754 222333444455
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
.++... |++++|+|+++..+. .....++..+... +.|+++|+
T Consensus 88 ~~l~~a-D~il~VvD~~~~~~~--~~~~~~~~~l~~~--~~pvilV~ 129 (308)
T 3iev_A 88 QSLEEA-DVILFMIDATEGWRP--RDEEIYQNFIKPL--NKPVIVVI 129 (308)
T ss_dssp HHHHHC-SEEEEEEETTTBSCH--HHHHHHHHHTGGG--CCCEEEEE
T ss_pred HHhhcC-CEEEEEEeCCCCCCc--hhHHHHHHHHHhc--CCCEEEEE
Confidence 666666 999999999985543 3222236666553 68988873
No 8
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.62 E-value=1.5e-15 Score=151.63 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=75.2
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc-hHHHHHHHHHHHHhh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE-DRNIIEMQAVTALAH 316 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~-~~~~ie~~~~~~l~~ 316 (358)
++|+++|.||||||||+|+|++.+.. +++.|++|++...+.+.+++..+++|||||+.....+ ....+..++..++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 57999999999999999999998854 7899999999999999999999999999999753211 123345566677777
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
. |++|+|+|++............++.. . ++|+++|
T Consensus 82 a-d~il~V~D~~~~~~~~d~~i~~~l~~---~--~~p~ilv 116 (439)
T 1mky_A 82 A-DLVLFVVDGKRGITKEDESLADFLRK---S--TVDTILV 116 (439)
T ss_dssp C-SEEEEEEETTTCCCHHHHHHHHHHHH---H--TCCEEEE
T ss_pred C-CEEEEEEECCCCCCHHHHHHHHHHHH---c--CCCEEEE
Confidence 6 99999999987543322222333333 2 6898886
No 9
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.62 E-value=3.4e-15 Score=138.96 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=86.1
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcch-H-HHHHHHHHHHH-h
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLED-R-NIIEMQAVTAL-A 315 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~-~-~~ie~~~~~~l-~ 315 (358)
++|+++|.||||||||+|+|+|....++++|++|.+...+.+.+++..+.+|||||+.+..... . ..-+..+..++ .
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 5799999999999999999999988899999999999999999999999999999997654310 0 11122233333 1
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
..+|++++|+|+++ .+....+...+... ++|+++|.
T Consensus 82 ~~~d~vi~VvDas~-----~~~~~~l~~~l~~~--~~pvilv~ 117 (256)
T 3iby_A 82 LEYDCIINVIDACH-----LERHLYLTSQLFEL--GKPVVVAL 117 (256)
T ss_dssp SCCSEEEEEEEGGG-----HHHHHHHHHHHTTS--CSCEEEEE
T ss_pred CCCCEEEEEeeCCC-----chhHHHHHHHHHHc--CCCEEEEE
Confidence 33599999999886 34556666677655 78998873
No 10
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.61 E-value=2e-15 Score=139.54 Aligned_cols=121 Identities=17% Similarity=0.107 Sum_probs=77.4
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCC--cceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYA--FTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~--~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
....+|+++|.||||||||+|+|++..+.....+ ++|..+..+...+++..+.||||||+.+........+......+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 3567999999999999999999999987655444 38888888888999999999999999765432211111112222
Q ss_pred H---hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcc-cCCCCeEEEe
Q psy15712 314 L---AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRP-LFNNKVGPLE 357 (358)
Q Consensus 314 l---~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~-~f~~kPvilv 357 (358)
+ ...+|++|+|+|++. ........++++.++.. ...+.|+|++
T Consensus 99 ~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv 145 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVF 145 (247)
T ss_dssp HHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred HHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEE
Confidence 2 234599999999974 33222233444444321 2235787765
No 11
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.59 E-value=5.8e-15 Score=134.92 Aligned_cols=121 Identities=19% Similarity=0.128 Sum_probs=75.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCC--cceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYA--FTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~--~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
..++|+++|.+|||||||+|+|++.....+..+ ++|..+......+.+..+.||||||+.+.........+.......
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 107 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCIL 107 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999887666666 788999888899999999999999998765443322222211111
Q ss_pred --hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 315 --AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 315 --~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
...+|++|+|+|++.. .......+..+......-..+|+++|+
T Consensus 108 ~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~ 152 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIF 152 (239)
T ss_dssp HTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEE
T ss_pred hcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEE
Confidence 1234999999999742 222222233332221111246888874
No 12
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.59 E-value=7.6e-15 Score=137.72 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=85.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc-h-HHHHHHHHHHHH-
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE-D-RNIIEMQAVTAL- 314 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~-~-~~~ie~~~~~~l- 314 (358)
.++|+++|.+|||||||+|+|++....++++|++|.+...+.+.+.+..+.+|||||+.+.... . ...-+..+..++
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 4689999999999999999999999888999999999999999998899999999999775411 0 011112222232
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
...+|++++|+|+++ .+....+...+... +.|+++|+
T Consensus 83 ~~~~d~ii~VvD~~~-----~~~~~~~~~~l~~~--~~p~ivv~ 119 (274)
T 3i8s_A 83 SGDADLLINVVDASN-----LERNLYLTLQLLEL--GIPCIVAL 119 (274)
T ss_dssp HTCCSEEEEEEEGGG-----HHHHHHHHHHHHHH--TCCEEEEE
T ss_pred hcCCCEEEEEecCCC-----hHHHHHHHHHHHhc--CCCEEEEE
Confidence 234599999999886 33445555555554 78998873
No 13
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.58 E-value=3.1e-14 Score=122.23 Aligned_cols=111 Identities=22% Similarity=0.302 Sum_probs=77.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh-h
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA-H 316 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~-~ 316 (358)
..+|+++|.+|||||||+|+|++....++.+|++|.+...+.+.+++..+++|||||+........ .+.....++. .
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI--DEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH--HHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch--hHHHHHHHHhcC
Confidence 368999999999999999999998877788888898888888888888999999999876432211 1122233333 2
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+|++++|+|+++ .+....++..+... ++|+++|
T Consensus 81 ~~~~~i~v~D~~~-----~~~~~~~~~~~~~~--~~p~ilv 114 (165)
T 2wji_A 81 KPDLVVNIVDATA-----LERNLYLTLQLMEM--GANLLLA 114 (165)
T ss_dssp CCSEEEEEEETTC-----HHHHHHHHHHHHHT--TCCEEEE
T ss_pred CCCEEEEEecCCc-----hhHhHHHHHHHHhc--CCCEEEE
Confidence 3599999999876 22334456565443 6898886
No 14
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.56 E-value=2.4e-14 Score=133.21 Aligned_cols=111 Identities=24% Similarity=0.258 Sum_probs=85.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh-h
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA-H 316 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~-~ 316 (358)
.++|+++|.||||||||+|+|++....++++|++|.+...+.+.+.+..+.+|||||+........+ +..+..++. .
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--e~v~~~~~~~~ 82 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID--EKIARDYLLKG 82 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH--HHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH--HHHHHHHHhhc
Confidence 4689999999999999999999998888999999999999999888889999999999765332211 122233343 3
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+|++++|+|+++. +..+.++..+... +.|+++|
T Consensus 83 ~~d~ii~V~D~t~~-----~~~~~~~~~l~~~--~~pvilv 116 (258)
T 3a1s_A 83 DADLVILVADSVNP-----EQSLYLLLEILEM--EKKVILA 116 (258)
T ss_dssp CCSEEEEEEETTSC-----HHHHHHHHHHHTT--TCCEEEE
T ss_pred CCCEEEEEeCCCch-----hhHHHHHHHHHhc--CCCEEEE
Confidence 45999999999862 3445566666554 7898886
No 15
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.56 E-value=3.5e-15 Score=148.88 Aligned_cols=113 Identities=22% Similarity=0.259 Sum_probs=71.7
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
++|+++|.||||||||+|+|++.+.. +.+.|++|++...+...+.+..+++|||||+..........+..++..++.+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999998754 78899999999999999999999999999997433222234455566677776
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
|++++|+|++..... .. ..+...++. .++|+++|
T Consensus 84 -d~il~vvD~~~~~~~--~d-~~~~~~l~~--~~~pvilv 117 (436)
T 2hjg_A 84 -DVIIFMVNGREGVTA--AD-EEVAKILYR--TKKPVVLA 117 (436)
T ss_dssp -SEEEEEEETTTCSCH--HH-HHHHHHHTT--CCSCEEEE
T ss_pred -CEEEEEEeCCCCCCH--HH-HHHHHHHHH--cCCCEEEE
Confidence 999999999885443 22 233444443 37899887
No 16
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.56 E-value=2.5e-14 Score=132.16 Aligned_cols=120 Identities=16% Similarity=0.068 Sum_probs=80.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCc-ceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHH---HHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAF-TTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNII---EMQAV 311 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~-tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~i---e~~~~ 311 (358)
...+|+++|.+|||||||+|+|++.... .+..+. +|.+...+.+.+.+..+.+|||||+.+......... .....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~ 100 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYL 100 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999998854 334444 788888888889999999999999987654333222 22222
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
.++.. +|++++|+|++. ........+.++.++...-.++|.++++
T Consensus 101 ~~~~~-~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv 145 (260)
T 2xtp_A 101 LSAPG-PHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLF 145 (260)
T ss_dssp HHTTC-CSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred hcCCC-CcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEE
Confidence 23333 499999999985 2222222334455443211145666653
No 17
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.55 E-value=1.4e-14 Score=146.13 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=61.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHH----HHH
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQ----AVT 312 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~----~~~ 312 (358)
..+|+++|.||||||||+|+|++.+. .++++++||++.....+.+++..+.+|||||+.+.. ..++.. +..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~----~~ve~~gi~~~~~ 308 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG----EEIEHEGIRRSRM 308 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------------------------C
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch----hHHHHHHHHHHHh
Confidence 46799999999999999999999864 588999999999999999999999999999996532 112211 222
Q ss_pred HHhhcccEEEEEEeCCCCCCCC-HHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 313 ALAHLRAAVLYFIDISEQCGHS-IQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~~-~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
++.. +|++++|+|++++.... ......++..+. ++|+++|+
T Consensus 309 ~~~~-aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~----~~piIvV~ 350 (476)
T 3gee_A 309 KMAE-ADLILYLLDLGTERLDDELTEIRELKAAHP----AAKFLTVA 350 (476)
T ss_dssp CCSS-CSEEEEEEETTTCSSGGGHHHHHHHHHHCT----TSEEEEEE
T ss_pred hccc-CCEEEEEEECCCCcchhhhHHHHHHHHhcC----CCCEEEEE
Confidence 2333 49999999999865432 123344555543 68998874
No 18
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.54 E-value=3.3e-14 Score=143.67 Aligned_cols=113 Identities=22% Similarity=0.297 Sum_probs=83.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCC-CCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGIL-DHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~-~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|+||||||||+|+|++.+. .++++|+||+++....+.+++..+.+|||||+. ..........-..+..++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 46899999999999999999999874 588999999999999999999999999999997 4321110000012344555
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
.. |++|+|+|++++... +..++++.+ .++|+++|+
T Consensus 323 ~a-D~vl~VvD~s~~~s~---~~~~il~~l----~~~piivV~ 357 (482)
T 1xzp_A 323 KA-DIVLFVLDASSPLDE---EDRKILERI----KNKRYLVVI 357 (482)
T ss_dssp HC-SEEEEEEETTSCCCH---HHHHHHHHH----TTSSEEEEE
T ss_pred cc-cEEEEEecCCCCCCH---HHHHHHHHh----cCCCEEEEE
Confidence 65 999999999886533 234444443 368988873
No 19
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.54 E-value=3.3e-14 Score=127.46 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=84.5
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCC-C-cccCCCcceeeeEEEEEE-ecCceEEEEeCCCCCCCCcc--hHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRAD-V-DVQPYAFTTKSLYVGHTD-YKYLRWQVIDTPGILDHSLE--DRNIIEMQA 310 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~-~-~v~~~~~tT~~~~~~~~~-~~~~~~~liDTPG~~~~~~~--~~~~ie~~~ 310 (358)
...++|+++|.+|||||||+|+|++.. . .+++.+++|.+....... ..+..+.+|||||+.+.... ....+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 356799999999999999999999987 3 578888999988776665 55679999999998765322 223333334
Q ss_pred HHHHhhc--ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 311 VTALAHL--RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 311 ~~~l~~~--~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
..++... .|++++|+|+++.... ....++..+... ++|+++|.
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~l~~~--~~p~i~v~ 151 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTE---LDRRMIEWFAPT--GKPIHSLL 151 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCH---HHHHHHHHHGGG--CCCEEEEE
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCH---HHHHHHHHHHhc--CCCEEEEE
Confidence 4455543 3789999999885432 334556666553 68988873
No 20
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.54 E-value=4.4e-14 Score=119.30 Aligned_cols=112 Identities=24% Similarity=0.288 Sum_probs=72.5
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
++|+++|.+|||||||+|+|++.... +.+.+++|.+.....+.+.+..+.+|||||...... ....+.......+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK-WEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS-CCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc-hHHHHHHHHHHHHHhC
Confidence 57999999999999999999988754 677888898888888888888999999999976432 1122233333444555
Q ss_pred ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 318 RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
|++++|+|+++..........+++.. .+.|+++|
T Consensus 81 -~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~ilv 114 (161)
T 2dyk_A 81 -EVVLFAVDGRAELTQADYEVAEYLRR-----KGKPVILV 114 (161)
T ss_dssp -SEEEEEEESSSCCCHHHHHHHHHHHH-----HTCCEEEE
T ss_pred -CEEEEEEECCCcccHhHHHHHHHHHh-----cCCCEEEE
Confidence 99999999988543322222233332 26788876
No 21
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.54 E-value=3.8e-14 Score=133.04 Aligned_cols=110 Identities=21% Similarity=0.217 Sum_probs=83.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh-
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH- 316 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~- 316 (358)
..+|+++|.||||||||+|+|++....++++|++|.+...+.+.+ +..+++|||||+......... +..+..++..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~--e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPE--AKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHH--HHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChH--HHHHHHHHhcC
Confidence 468999999999999999999998888899999999988888776 789999999998764322211 2233444442
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+|++++|+|+++ .+....+...+... ++|++++
T Consensus 80 ~~d~vi~V~D~t~-----~e~~~~~~~~l~~~--~~p~ilv 113 (272)
T 3b1v_A 80 RADSILNVVDATN-----LERNLYLTTQLIET--GIPVTIA 113 (272)
T ss_dssp CCSEEEEEEEGGG-----HHHHHHHHHHHHHT--CSCEEEE
T ss_pred CCCEEEEEecCCc-----hHhHHHHHHHHHhc--CCCEEEE
Confidence 4699999999876 23445555555543 7898886
No 22
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.54 E-value=2.2e-14 Score=133.85 Aligned_cols=119 Identities=19% Similarity=0.231 Sum_probs=82.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHH-
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL- 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l- 314 (358)
..++|+++|.+|+|||||+|+|++... .+++.+++|.......+...+..+.+|||||+.+........++.. ..++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i-~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNII-KSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHH-HHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHH-HHHhh
Confidence 467999999999999999999999885 4778888888887777788888999999999977543332222221 1121
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCC---CeEEEeC
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNN---KVGPLEY 358 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~---kPvilvf 358 (358)
...+|++|||+|++.. +... ....++..+...+.. +|+++|+
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~-~~~~~~~~l~~~~~~~~~~~iivV~ 161 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDN-LDKLVAKAITDSFGKGIWNKAIVAL 161 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCH-HHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred cCCCCEEEEEEeCCCC-cCCH-HHHHHHHHHHHHhCcccccCEEEEE
Confidence 1235999999998763 2322 234555555443322 6888874
No 23
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.54 E-value=3.2e-14 Score=132.30 Aligned_cols=119 Identities=19% Similarity=0.216 Sum_probs=82.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
...+|+++|.+|||||||+|+|++... .+++++++|.......+.+++..+.+|||||+.+.........+.. ...+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i-~~~l~ 113 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELI-KGFLV 113 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHH-HHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHH-HHHHh
Confidence 467999999999999999999999886 5788899999888888889999999999999987644333322221 12221
Q ss_pred -hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCC---CCeEEEeC
Q psy15712 316 -HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFN---NKVGPLEY 358 (358)
Q Consensus 316 -~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~---~kPvilvf 358 (358)
...|+++||+|++... ... ....++..+...+. .+|+++|+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~-~~~~~~~~l~~~~~~~~~~~~ivv~ 158 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDE-LDKQVVIAITQTFGKEIWCKTLLVL 158 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCH-HHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred cCCCCEEEEEEcCCCCC-CCH-HHHHHHHHHHHHhchhhhcCEEEEE
Confidence 2358999999987643 322 22344444443322 35877763
No 24
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.53 E-value=9.8e-15 Score=146.47 Aligned_cols=114 Identities=22% Similarity=0.256 Sum_probs=76.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
.++|+++|.||||||||+|+|++.+.. +.+.|++|++...+...+.+..+++|||||+..........+..++..++..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 578999999999999999999998754 7889999999999999899999999999998744333344455566667777
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
. |++|+|+|++...... ...+...++. .++|+++|
T Consensus 103 a-d~il~VvD~~~~~~~~---d~~l~~~l~~--~~~pvilV 137 (456)
T 4dcu_A 103 A-DVIIFMVNGREGVTAA---DEEVAKILYR--TKKPVVLA 137 (456)
T ss_dssp C-SEEEEEEESSSCSCHH---HHHHHHHHTT--CCSCEEEE
T ss_pred C-CEEEEEEeCCCCCChH---HHHHHHHHHH--cCCCEEEE
Confidence 6 9999999987744332 2334445544 37899887
No 25
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.53 E-value=3.1e-14 Score=142.03 Aligned_cols=116 Identities=20% Similarity=0.184 Sum_probs=78.6
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc--hHHHHH-HHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE--DRNIIE-MQAV 311 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~--~~~~ie-~~~~ 311 (358)
...++|+++|.||||||||+|+|++.... ++++++||.+.....+.+++..+++|||||+.+.... ..+... ..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 45689999999999999999999998754 8899999999998889999999999999999765431 111111 1233
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+++.. |++++|+|+++.... +...++..+... ++|+++|
T Consensus 253 ~~~~~a-d~~llv~D~~~~~s~---~~~~~~~~~~~~--~~~iiiv 292 (436)
T 2hjg_A 253 KAIDRS-EVVAVVLDGEEGIIE---QDKRIAGYAHEA--GKAVVIV 292 (436)
T ss_dssp HHHHHC-SEEEEEEETTTCCCH---HHHHHHHHHHHT--TCEEEEE
T ss_pred HHHHhC-CEEEEEEcCCcCCcH---HHHHHHHHHHHc--CCcEEEE
Confidence 455665 999999999985543 234566555443 7898887
No 26
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.52 E-value=6.9e-14 Score=130.54 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=84.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh-h
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA-H 316 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~-~ 316 (358)
.++|+++|.+|||||||+|+|+|....++++|++|.+...+.+.+++..+.+|||||+.+........ ..+..++. .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~--~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDE--LIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHH--HHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHH--HHHHHhhhcc
Confidence 46899999999999999999999988888999999999999999999999999999998654333222 22333332 3
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+|++++|+|+++. +..+.+...+... ..+|+++|
T Consensus 81 ~~d~vi~v~D~~~~-----~~~~~~~~~~~~~-~~~p~ilv 115 (271)
T 3k53_A 81 NADVIVDIVDSTCL-----MRNLFLTLELFEM-EVKNIILV 115 (271)
T ss_dssp CCSEEEEEEEGGGH-----HHHHHHHHHHHHT-TCCSEEEE
T ss_pred CCcEEEEEecCCcc-----hhhHHHHHHHHhc-CCCCEEEE
Confidence 35999999998872 3444555555443 22888876
No 27
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.52 E-value=1.4e-13 Score=119.81 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=84.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.+|||||||+|+|++....++.+|++|.+...+.+.+++..+++|||||......... .+.....++..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI--DEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH--HHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH--HHHHHHHHHhc
Confidence 3578999999999999999999998877788899999999899988889999999999876532211 11122233332
Q ss_pred -cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 317 -LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 317 -~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+|++++|+|+++ .+....++..+... +.|+++|
T Consensus 84 ~~~~~~i~v~d~~~-----~~~~~~~~~~~~~~--~~piilv 118 (188)
T 2wjg_A 84 EKPDLVVNIVDATA-----LERNLYLTLQLMEM--GANLLLA 118 (188)
T ss_dssp HCCSEEEEEEEGGG-----HHHHHHHHHHHHTT--TCCEEEE
T ss_pred cCCCEEEEEecchh-----HHHHHHHHHHHHhc--CCCEEEE
Confidence 3599999999875 34455666666553 7888886
No 28
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.52 E-value=7.6e-15 Score=142.26 Aligned_cols=118 Identities=19% Similarity=0.342 Sum_probs=84.6
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC-ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY-LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
+.|+++|+||||||||+|+|++.++.+++++|||..+..+.+.+.+ ..+++|||||+.+....... +...+...+...
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~-l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG-LGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT-THHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccch-hHHHHHHHHHhc
Confidence 4699999999999999999999998889999999999999888876 78999999998653222211 111223333444
Q ss_pred ccEEEEEEeCCCCCC-CCHHHHHHHHHHHcc---cCCCCeEEEeC
Q psy15712 318 RAAVLYFIDISEQCG-HSIQEQIGLFKSIRP---LFNNKVGPLEY 358 (358)
Q Consensus 318 ~d~iL~VvD~s~~~~-~~~~~q~~ll~~i~~---~f~~kPvilvf 358 (358)
+++|||+|+++..+ .+.+....++.++.. ...++|+++|+
T Consensus 238 -d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~ 281 (342)
T 1lnz_A 238 -RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 281 (342)
T ss_dssp -CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEE
T ss_pred -cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEE
Confidence 99999999987432 223333345555543 23578988874
No 29
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.50 E-value=8.2e-14 Score=119.74 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=80.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
..++|+++|.+|||||||+|+|++........+++|.+.....+.+++ ..+.+|||||....... ...++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 79 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI--------TSTYY 79 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC--------CGGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh--------HHHHh
Confidence 457899999999999999999999887766777888888888888877 57899999996543211 11233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|++++ .+......++..+.....+.|+++|
T Consensus 80 ~~~-d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ilv 119 (181)
T 3tw8_B 80 RGT-HGVIVVYDVTSA--ESFVNVKRWLHEINQNCDDVCRILV 119 (181)
T ss_dssp TTC-SEEEEEEETTCH--HHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred ccC-CEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 444 999999999884 3344444566666655567898887
No 30
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.49 E-value=6.4e-13 Score=124.67 Aligned_cols=134 Identities=15% Similarity=0.130 Sum_probs=81.7
Q ss_pred HHHHHHHHhccCCC-CCCCCcEEEEecCCCCCHHHHHHHHhCCCCc------ccCCCc----------------------
Q psy15712 220 YLEQVRQHLSRLPS-IDPFTRTIIICGFPNVGKSSFLNKITRADVD------VQPYAF---------------------- 270 (358)
Q Consensus 220 ~l~~~~~~l~~l~~-~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~------v~~~~~---------------------- 270 (358)
.++.+...++.+.. .....+.|+++|.+|||||||+|+|++..+. ++..|+
T Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~ 86 (299)
T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 86 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCccc
Confidence 34555555554332 2345789999999999999999999998752 333443
Q ss_pred ceeee-----------------------EEEEEEe-cCceEEEEeCCCCCCCC-----cchHHHHHHHHHHHHhhcccEE
Q psy15712 271 TTKSL-----------------------YVGHTDY-KYLRWQVIDTPGILDHS-----LEDRNIIEMQAVTALAHLRAAV 321 (358)
Q Consensus 271 tT~~~-----------------------~~~~~~~-~~~~~~liDTPG~~~~~-----~~~~~~ie~~~~~~l~~~~d~i 321 (358)
+|.+. ....+.. .+..+.+|||||+.... ......+...+..++....+++
T Consensus 87 tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 166 (299)
T 2aka_B 87 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 166 (299)
T ss_dssp CCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 33320 0001111 13689999999998643 1111234445556676664566
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 322 LYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 322 L~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
++|+|++..... .+...++..+.+. ++|+++|
T Consensus 167 l~v~d~~~~~~~--~~~~~~~~~~~~~--~~~~i~V 198 (299)
T 2aka_B 167 LAVSPANSDLAN--SDALKIAKEVDPQ--GQRTIGV 198 (299)
T ss_dssp EEEEESSSCGGG--CHHHHHHHHHCTT--CSSEEEE
T ss_pred EEEecCCcchhh--hHHHHHHHHhCCC--CCeEEEE
Confidence 689999874332 2223566666543 6888887
No 31
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.48 E-value=4.6e-13 Score=117.07 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=68.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC--cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcch--HHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV--DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLED--RNIIEMQAVT 312 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~--~~~ie~~~~~ 312 (358)
..++|+++|.+|||||||+|+|++... .+.+.+++|........ +..+.+|||||+.+..... ...+......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 568999999999999999999998862 35677777877665433 3489999999987654322 2223322333
Q ss_pred HHhhc--ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 313 ALAHL--RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 313 ~l~~~--~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
++... .|++++|+|+++...... ..++..+.. .+.|+++|
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~---~~~~~~~~~--~~~p~i~v 140 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDD---VQMYEFLKY--YGIPVIVI 140 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHH---HHHHHHHHH--TTCCEEEE
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHH---HHHHHHHHH--cCCCEEEE
Confidence 44433 289999999988544322 333444433 26788876
No 32
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.48 E-value=4.4e-13 Score=126.97 Aligned_cols=135 Identities=19% Similarity=0.193 Sum_probs=79.3
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCCc------ccCCC---cceeee--------------
Q psy15712 219 EYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVD------VQPYA---FTTKSL-------------- 275 (358)
Q Consensus 219 ~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~------v~~~~---~tT~~~-------------- 275 (358)
..++++.+.+..+.......+.|+++|.+|||||||+|+|+|..+. +...| .+|+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~ 84 (315)
T 1jwy_B 5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEF 84 (315)
T ss_dssp HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhh
Confidence 3455566666554433456789999999999999999999998752 22233 222210
Q ss_pred ------------------------EEE-------------EEEecCceEEEEeCCCCCCCCc-----chHHHHHHHHHHH
Q psy15712 276 ------------------------YVG-------------HTDYKYLRWQVIDTPGILDHSL-----EDRNIIEMQAVTA 313 (358)
Q Consensus 276 ------------------------~~~-------------~~~~~~~~~~liDTPG~~~~~~-----~~~~~ie~~~~~~ 313 (358)
..+ .....+..+.+|||||+.+.+. .....+...+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 164 (315)
T 1jwy_B 85 LHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAY 164 (315)
T ss_dssp SSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHH
T ss_pred hcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHH
Confidence 000 0111345899999999976331 2223344455666
Q ss_pred HhhcccEEEEEEeCCCC-CCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 314 LAHLRAAVLYFIDISEQ-CGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~-~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
+... |++++|+|+++. .... ....++..+... ++|+++|+
T Consensus 165 ~~~~-d~iilvvd~~~~~~~~~--~~~~i~~~~~~~--~~~~i~v~ 205 (315)
T 1jwy_B 165 IKKQ-NAIIVAVTPANTDLANS--DALQLAKEVDPE--GKRTIGVI 205 (315)
T ss_dssp HHST-TEEEEEEEESSSCSTTC--SHHHHHHHHCSS--CSSEEEEE
T ss_pred HcCC-CeEEEEEEecCcchhhh--HHHHHHHHhCCC--CCcEEEEE
Confidence 6666 999999997543 2211 223556666543 68888873
No 33
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.45 E-value=2.5e-13 Score=118.50 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=74.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--------------------------------
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY-------------------------------- 284 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~-------------------------------- 284 (358)
...+|+++|.+|||||||+|+|++........++++.+.....+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 467899999999999999999998876544444444555555555544
Q ss_pred -------ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 285 -------LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 285 -------~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
..+.+|||||...... .+...+... |++++|+|++++. +......++..+.... ++|+++|
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~-d~~i~v~D~~~~~--s~~~~~~~~~~i~~~~-~~piilv 153 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYAS--------IVPLYYRGA-TCAIVVFDISNSN--TLDRAKTWVNQLKISS-NYIIILV 153 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTT--------THHHHHTTC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHS-CCEEEEE
T ss_pred ccCccceeEEEEEECCCcHHHHH--------HHHHHhcCC-CEEEEEEECCCHH--HHHHHHHHHHHHHhhC-CCcEEEE
Confidence 6789999999643221 133445555 9999999998843 2333345666665432 4788887
No 34
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.45 E-value=2.4e-13 Score=117.82 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=76.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........++++.+.....+.+++ ..+.+|||||... .......++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~ 80 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER--------FRSVTRSYY 80 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG--------GHHHHHTTS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH--------HHHHHHHHH
Confidence 457899999999999999999998876655666667666666677766 4789999999732 112233344
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
... |++++|+|++++.. ......++..+... -.+.|+++|
T Consensus 81 ~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piilv 121 (186)
T 2bme_A 81 RGA-AGALLVYDITSRET--YNALTNWLTDARMLASQNIVIILC 121 (186)
T ss_dssp TTC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred hcC-CEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCcEEEE
Confidence 444 99999999988432 22233444444322 147888887
No 35
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.45 E-value=3.3e-13 Score=118.67 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=71.5
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy15712 235 DPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVT 312 (358)
Q Consensus 235 ~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~ 312 (358)
.....+|+++|.+|||||||+|+|++........++.+.+.....+.+++. .+++|||||.... ......
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~~~~ 94 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF--------NSITSA 94 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH--------HHHHHH
Confidence 345678999999999999999999988765445566666666666777663 6899999996321 222344
Q ss_pred HHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 313 ALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
++... |++++|+|+++... .+....++..+.... .+.|+++|
T Consensus 95 ~~~~~-d~iilV~D~~~~~s--~~~~~~~~~~i~~~~~~~~piilV 137 (192)
T 2il1_A 95 YYRSA-KGIILVYDITKKET--FDDLPKWMKMIDKYASEDAELLLV 137 (192)
T ss_dssp HHHHC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred HhcCC-CEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCcEEEE
Confidence 55555 99999999988432 222223444443322 36888887
No 36
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.45 E-value=1.3e-12 Score=113.65 Aligned_cols=114 Identities=19% Similarity=0.176 Sum_probs=76.4
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcch--HHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLED--RNIIEMQAVT 312 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~--~~~ie~~~~~ 312 (358)
...++|+++|.+|||||||+|+|++... ...+.+++|........ +.++.+|||||+....... ...+......
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 3567999999999999999999999874 46677788877665433 4578999999986653322 2223333333
Q ss_pred HHhhc--ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 313 ALAHL--RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 313 ~l~~~--~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
++... .|++++|+|++........ .++..+... +.|+++|
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~---~~~~~~~~~--~~p~i~v 139 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDL---MMVEWMKSL--NIPFTIV 139 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH---HHHHHHHHT--TCCEEEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHH---HHHHHHHHc--CCCEEEE
Confidence 44433 3889999999875433222 333333332 6888887
No 37
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.44 E-value=2.4e-13 Score=116.88 Aligned_cols=110 Identities=14% Similarity=0.146 Sum_probs=80.2
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 234 IDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 234 ~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
+..+.++|+++|.+|||||||+|+|++..+.....+++|.+.....+.+++..+.+|||||........ ...
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 75 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR--------ARG 75 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC--------CSS
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH--------HHH
Confidence 345678999999999999999999999887777777778777777778888899999999975432111 011
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+. .+|++++|+|+++... ...++.+..+... +.|+++|
T Consensus 76 ~~-~~d~~i~v~d~~~~~~---~~~~~~l~~~~~~--~~p~ilv 113 (178)
T 2lkc_A 76 AQ-VTDIVILVVAADDGVM---PQTVEAINHAKAA--NVPIIVA 113 (178)
T ss_dssp CC-CCCEEEEEEETTCCCC---HHHHHHHHHHGGG--SCCEEEE
T ss_pred Hh-hCCEEEEEEECCCCCc---HHHHHHHHHHHhC--CCCEEEE
Confidence 22 2489999999987432 2334555555443 6788876
No 38
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.44 E-value=7.5e-13 Score=115.79 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=74.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.+|||||||+|+|++........+ |.+.....+...+..+++|||||... .......++..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~ 90 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKGNVTIKLWDIGGQPR--------FRSMWERYCRG 90 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEETTEEEEEEEECCSHH--------HHTTHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCC--CCceeEEEEEeCCEEEEEEECCCCHh--------HHHHHHHHHcc
Confidence 467899999999999999999998775432223 44444455667788999999999732 22223345555
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
. |++++|+|+++.. +......++..+... ..+.|+++|
T Consensus 91 ~-d~ii~v~D~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv 130 (188)
T 1zd9_A 91 V-SAIVYMVDAADQE--KIEASKNELHNLLDKPQLQGIPVLVL 130 (188)
T ss_dssp C-SEEEEEEETTCGG--GHHHHHHHHHHHHTCGGGTTCCEEEE
T ss_pred C-CEEEEEEECCCHH--HHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 5 9999999998743 344445566655432 357898887
No 39
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.44 E-value=4.4e-13 Score=113.74 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=73.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++........++.+.+.....+.+++. .+.+|||||..... .....++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~ 74 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA--------SLAPXYYR 74 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG--------GGHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh--------hhhhhhhc
Confidence 357999999999999999999987765444455555555555555543 78999999964321 12334555
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
.. |++++|+|++++. +......++..+.... .+.|+++|
T Consensus 75 ~~-d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv 114 (170)
T 1ek0_A 75 NA-QAALVVYDVTKPQ--SFIKARHWVKELHEQASKDIIIALV 114 (170)
T ss_dssp TC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred cC-cEEEEEEecCChH--HHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 55 9999999998843 2333344555554322 46888776
No 40
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.44 E-value=4e-13 Score=127.94 Aligned_cols=117 Identities=13% Similarity=0.015 Sum_probs=81.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC-CcccCCCcceeeeEEEEEEe-cCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDY-KYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++.. ..+++++++|.+...+...+ ++..+++|||||.... ...........++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF---MENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH---HHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH---hhhhhhhHHHHHh
Confidence 35689999999999999999998874 44667888999998888876 4568999999998421 0000112233445
Q ss_pred hhcccEEEEEEeCCCCCCCCHH-HHHHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQ-EQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~-~q~~ll~~i~~~f~~kPvilv 357 (358)
+.. |++++|+|+++...+... ....++..+.....+.|+++|
T Consensus 79 ~~a-d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv 121 (307)
T 3r7w_A 79 QMV-QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121 (307)
T ss_dssp TTC-SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ccC-CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 555 999999999985433221 223445555544557899887
No 41
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.44 E-value=2.8e-13 Score=118.40 Aligned_cols=110 Identities=14% Similarity=0.153 Sum_probs=78.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........+++|.+.....+.+++ ..+++|||||...... ....++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 86 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT--------ITSSYY 86 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT--------THHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh--------hHHHHH
Confidence 457899999999999999999999887666677778888877777777 4689999999643211 123345
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
... |++++|+|+++... .+....++..+.... .+.|+++|
T Consensus 87 ~~~-d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv 127 (196)
T 3tkl_A 87 RGA-HGIIVVYDVTDQES--FNNVKQWLQEIDRYASENVNKLLV 127 (196)
T ss_dssp TTC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred hhC-CEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCCEEEE
Confidence 555 99999999998432 222233444443321 36788886
No 42
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.44 E-value=1.3e-13 Score=116.95 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=75.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........++.+.+.....+.+++. .+++|||||....... ...++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 75 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI--------TKAYY 75 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC--------CHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH--------HHHHh
Confidence 3568999999999999999999987765444555555666666666553 7899999997533211 22344
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|++++. +.+....++..+.....+.|+++|
T Consensus 76 ~~~-d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~piilv 115 (168)
T 1z2a_A 76 RGA-QACVLVFSTTDRE--SFEAISSWREKVVAEVGDIPTALV 115 (168)
T ss_dssp TTC-CEEEEEEETTCHH--HHHTHHHHHHHHHHHHCSCCEEEE
T ss_pred cCC-CEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCEEEE
Confidence 555 9999999998843 223333455555443357888886
No 43
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.44 E-value=4.9e-13 Score=116.17 Aligned_cols=107 Identities=12% Similarity=0.180 Sum_probs=73.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.+|||||||+|+|++.. . ..+. .|.+.....+.+++..+++|||||... .......++..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~ 85 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-V-DTIS-PTLGFNIKTLEHRGFKLNIWDVGGQKS--------LRSYWRNYFES 85 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-C-SSCC-CCSSEEEEEEEETTEEEEEEEECCSHH--------HHTTGGGGCTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-C-Cccc-ccCccceEEEEECCEEEEEEECCCCHh--------HHHHHHHHhcC
Confidence 46799999999999999999999877 2 2222 244455667777888999999999832 11112223344
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
. |++++|+|++++.. ......++..+... ..+.|+++|
T Consensus 86 ~-d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv 125 (186)
T 1ksh_A 86 T-DGLIWVVDSADRQR--MQDCQRELQSLLVEERLAGATLLIF 125 (186)
T ss_dssp C-SEEEEEEETTCGGG--HHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred C-CEEEEEEECcCHHH--HHHHHHHHHHHHhChhcCCCcEEEE
Confidence 4 99999999988543 44444555555432 357898887
No 44
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.44 E-value=3.9e-13 Score=134.82 Aligned_cols=116 Identities=21% Similarity=0.193 Sum_probs=79.7
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCC-CcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc--hHHHH-HHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE--DRNII-EMQAV 311 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~--~~~~i-e~~~~ 311 (358)
....+|+++|.+|||||||+|+|++.. ..++++++||.+.....+.+++..+++|||||+.+.... ..+.. ...+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 456899999999999999999999876 468899999999988888899999999999998765321 11111 11233
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.++... |++++|+|+++.... ....++..+.. .++|+++|
T Consensus 273 ~~~~~a-d~~llviD~~~~~~~---~~~~~~~~~~~--~~~~~ilv 312 (456)
T 4dcu_A 273 KAIDRS-EVVAVVLDGEEGIIE---QDKRIAGYAHE--AGKAVVIV 312 (456)
T ss_dssp HHHHHC-SEEEEEEETTTCCCH---HHHHHHHHHHH--TTCEEEEE
T ss_pred HHHhhC-CEEEEEEeCCCCcCH---HHHHHHHHHHH--cCCCEEEE
Confidence 345555 999999999985542 23344444443 37898887
No 45
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.44 E-value=5.5e-13 Score=116.47 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=74.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHH-HHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIE-MQAVTA 313 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie-~~~~~~ 313 (358)
...+|+++|.+|||||||+|+|++........++.+.+.....+.+++ ..+++|||||... .. .....+
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~ 90 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER--------FRKSMVQHY 90 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH--------HHTTTHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh--------hhhhhhHHH
Confidence 457899999999999999999998776544455555556666666665 4789999999631 11 223345
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
+... |++++|+|+++... ......++..+... ..+.|+++|
T Consensus 91 ~~~~-d~iilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv 133 (189)
T 1z06_A 91 YRNV-HAVVFVYDMTNMAS--FHSLPAWIEECKQHLLANDIPRILV 133 (189)
T ss_dssp HTTC-CEEEEEEETTCHHH--HHTHHHHHHHHHHHCCCSCCCEEEE
T ss_pred hcCC-CEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 5555 99999999987432 22233455554432 246888876
No 46
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.44 E-value=7.6e-13 Score=111.88 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=70.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++.... ..++.|+.......+.+++. .+.+|||||.... ......++.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~ 74 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY--------AAIRDNYFR 74 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C--------HHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh--------HHHHHHHhh
Confidence 468999999999999999999987643 34445555555555556654 6889999997432 112334455
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
.. |++++|+|+++... ......++..+.... .++|+++|
T Consensus 75 ~~-d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv 115 (168)
T 1u8z_A 75 SG-EGFLCVFSITEMES--FAATADFREQILRVKEDENVPFLLV 115 (168)
T ss_dssp HC-SEEEEEEETTCHHH--HHHHHHHHHHHHHHHCCTTSCEEEE
T ss_pred cC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 55 99999999987432 233334445444322 36898887
No 47
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=4.6e-13 Score=116.80 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=72.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.+|||||||+|+|++.... ...| |.+.....+.+++..+++|||||...... ....++..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 83 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP--TIGSNVEEIVINNTRFLMWDIGGQESLRS--------SWNTYYTN 83 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEEC--CSCSSCEEEEETTEEEEEEECCC----CG--------GGHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcC--CCccceEEEEECCEEEEEEECCCCHhHHH--------HHHHHhcC
Confidence 4679999999999999999999976653 1112 33344556667788999999999854221 12234455
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
. |++++|+|+++.. +......++..+... ..+.|+++|
T Consensus 84 ~-d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv 123 (187)
T 1zj6_A 84 T-EFVIVVVDSTDRE--RISVTREELYKMLAHEDLRKAGLLIF 123 (187)
T ss_dssp C-CEEEEEEETTCTT--THHHHHHHHHHHHTSGGGTTCEEEEE
T ss_pred C-CEEEEEEeCCCHH--HHHHHHHHHHHHHhchhhCCCeEEEE
Confidence 5 9999999999854 444555566666542 357898887
No 48
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.43 E-value=2.1e-13 Score=120.96 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=77.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
..++|+++|.+|||||||+|+|++........++++.+.....+.+++ ..+++|||||...... .+..++
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~ 90 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT--------ITTAYY 90 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC--------CCHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--------HHHHHh
Confidence 457899999999999999999998887666667777777777777777 4789999999753221 122345
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
... |++++|+|+++... ......++..+.... .+.|+++|
T Consensus 91 ~~~-d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv 131 (213)
T 3cph_A 91 RGA-MGIILVYDVTDERT--FTNIKQWFKTVNEHANDEAQLLLV 131 (213)
T ss_dssp TTC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHTTTCSEEEEE
T ss_pred ccC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCEEEE
Confidence 555 99999999987432 222234555544322 26888887
No 49
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.43 E-value=1.2e-12 Score=113.99 Aligned_cols=112 Identities=14% Similarity=0.172 Sum_probs=75.5
Q ss_pred CCCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHH
Q psy15712 232 PSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAV 311 (358)
Q Consensus 232 ~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~ 311 (358)
........+|+++|.+|||||||+|+|++.... .+ ..|.+.....+.+++..+++|||||.... .....
T Consensus 10 ~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~--~~-~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~ 78 (181)
T 1fzq_A 10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDIS--HI-TPTQGFNIKSVQSQGFKLNVWDIGGQRKI--------RPYWR 78 (181)
T ss_dssp SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCE--EE-EEETTEEEEEEEETTEEEEEEECSSCGGG--------HHHHH
T ss_pred hccCCCceEEEEECCCCCCHHHHHHHHhcCCCC--cc-cCcCCeEEEEEEECCEEEEEEECCCCHHH--------HHHHH
Confidence 333346789999999999999999999987542 11 12333445566677889999999997421 12233
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
.++... |++++|+|+++.. +......++..+... ..+.|+++|
T Consensus 79 ~~~~~~-~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv 123 (181)
T 1fzq_A 79 SYFENT-DILIYVIDSADRK--RFEETGQELTELLEEEKLSCVPVLIF 123 (181)
T ss_dssp HHHTTC-SEEEEEEETTCGG--GHHHHHHHHHHHTTCGGGTTCCEEEE
T ss_pred HHhCCC-CEEEEEEECcCHH--HHHHHHHHHHHHHhChhhcCCCEEEE
Confidence 455555 9999999998743 344444555555332 357898886
No 50
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.43 E-value=2.6e-13 Score=116.50 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=71.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........++.+.+.....+.+++. .+.+|||||.... ......++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~ 77 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF--------RSLRTPFY 77 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG--------HHHHGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh--------hhhHHHHH
Confidence 4578999999999999999999988766555566666666667777664 7899999996321 11222333
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-----CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-----FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-----f~~kPvilv 357 (358)
... |++++|+|+++... ......++..+... ..+.|+++|
T Consensus 78 ~~~-~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~p~i~v 122 (177)
T 1wms_A 78 RGS-DCCLLTFSVDDSQS--FQNLSNWKKEFIYYADVKEPESFPFVIL 122 (177)
T ss_dssp TTC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHHTCSCTTTSCEEEE
T ss_pred hcC-CEEEEEEECcCHHH--HHHHHHHHHHHHHHccccccCCCcEEEE
Confidence 444 99999999988432 22223344443321 146788876
No 51
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.43 E-value=6.6e-14 Score=140.81 Aligned_cols=109 Identities=27% Similarity=0.284 Sum_probs=72.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHH----HHH
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQ----AVT 312 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~----~~~ 312 (358)
..+|+++|+||||||||+|+|++.+. .+++.++||++.....+.+++..+.+|||||+.+.. ..++.. +..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~----~~ve~~gi~~~~~ 299 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS----DQVEKIGVERSRQ 299 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------------------------C
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch----hHHHHHHHHHHhh
Confidence 45799999999999999999998764 478889999999888888899999999999995432 112221 222
Q ss_pred HHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 313 ALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
.+.. +|++++|+|++++... ....++..+. ++|+++|+
T Consensus 300 ~~~~-aD~vl~VvD~s~~~~~---~~~~i~~~l~----~~piivV~ 337 (462)
T 3geh_A 300 AANT-ADLVLLTIDAATGWTT---GDQEIYEQVK----HRPLILVM 337 (462)
T ss_dssp CCCS-CSEEEEEEETTTCSCH---HHHHHHHHHT----TSCEEEEE
T ss_pred hhhc-CCEEEEEeccCCCCCH---HHHHHHHhcc----CCcEEEEE
Confidence 2233 4999999999985432 2344555553 36888874
No 52
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.43 E-value=8.2e-13 Score=111.94 Aligned_cols=104 Identities=16% Similarity=0.253 Sum_probs=72.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
+|+++|.+|||||||+|+|++.... ...| |.+.....+.+.+..+++|||||... .......++... |
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~~-d 69 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT-Q 69 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSSCEEEEEECCCCGG--------GHHHHHHHTTTC-S
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECCEEEEEEEcCCChh--------hHHHHHHHhccC-C
Confidence 6899999999999999999976643 2233 44455666777788999999999842 122233345555 9
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 320 AVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 320 ~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
++++|+|++++. +......++..+.. ...+.|+++|
T Consensus 70 ~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv 107 (164)
T 1r8s_A 70 GLIFVVDSNDRE--RVNEAREELMRMLAEDELRDAVLLVF 107 (164)
T ss_dssp EEEEEEETTCGG--GHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred EEEEEEECCCHH--HHHHHHHHHHHHHhchhhcCCeEEEE
Confidence 999999998853 34444456665543 2357898887
No 53
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.42 E-value=8e-13 Score=131.88 Aligned_cols=115 Identities=20% Similarity=0.247 Sum_probs=74.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHH----HHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIE----MQAV 311 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie----~~~~ 311 (358)
...+|+++|.||||||||+|+|++... .++++++||++...+.+.++|..+.+|||||+..........++ ..+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 467999999999999999999999875 58899999999999999999999999999998543211101111 1123
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.++... |++++|+|++..... . ...+...+... ++|+++|
T Consensus 259 ~~i~~a-d~vllv~d~~~~~~~--~-~~~i~~~l~~~--~~~~ilv 298 (439)
T 1mky_A 259 DSIEKA-DVVVIVLDATQGITR--Q-DQRMAGLMERR--GRASVVV 298 (439)
T ss_dssp HHHHHC-SEEEEEEETTTCCCH--H-HHHHHHHHHHT--TCEEEEE
T ss_pred HHHhhC-CEEEEEEeCCCCCCH--H-HHHHHHHHHHc--CCCEEEE
Confidence 445554 999999999875432 2 23333333332 6888886
No 54
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.42 E-value=4.6e-13 Score=116.23 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=72.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeE-EEEEEecC-----------ceEEEEeCCCCCCCCcchHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLY-VGHTDYKY-----------LRWQVIDTPGILDHSLEDRN 304 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~-~~~~~~~~-----------~~~~liDTPG~~~~~~~~~~ 304 (358)
...+|+++|.+|||||||+|+|++........++.+.+.. ...+...+ ..+++|||||...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------- 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER------- 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------
Confidence 3578999999999999999999987764444444444443 33444443 3789999999832
Q ss_pred HHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 305 IIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 305 ~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
.......++... |++++|+|++++.. ......++..+.... .+.|+++|
T Consensus 83 -~~~~~~~~~~~~-d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv 133 (195)
T 3bc1_A 83 -FRSLTTAFFRDA-MGFLLLFDLTNEQS--FLNVRNWISQLQMHAYSENPDIVLC 133 (195)
T ss_dssp -GHHHHHHTTTTC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHSSSSSCCEEEE
T ss_pred -HHHHHHHHHcCC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 122233444554 99999999987432 233334555554322 47888887
No 55
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.42 E-value=5.8e-14 Score=133.55 Aligned_cols=110 Identities=24% Similarity=0.290 Sum_probs=77.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHH----HHH
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQ----AVT 312 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~----~~~ 312 (358)
...|+++|.||||||||+|+|++.++. +++.++||+....+.+.+++.++.+|||||+...+ ...+... +..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH---HHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc---hhhHHHHHHHHHHH
Confidence 458999999999999999999998864 67888999988888888888899999999985111 1111111 112
Q ss_pred HHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 313 ALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
++... |++++|+|+++ .. .. +..+++.+... ++|++++
T Consensus 85 ~l~~~-D~vl~Vvd~~~-~~--~~-~~~i~~~l~~~--~~P~ilv 122 (301)
T 1ega_A 85 SIGDV-ELVIFVVEGTR-WT--PD-DEMVLNKLREG--KAPVILA 122 (301)
T ss_dssp CCCCE-EEEEEEEETTC-CC--HH-HHHHHHHHHSS--SSCEEEE
T ss_pred HHhcC-CEEEEEEeCCC-CC--HH-HHHHHHHHHhc--CCCEEEE
Confidence 23333 89999999976 33 22 22344444432 6888876
No 56
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.42 E-value=1.7e-13 Score=116.46 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=71.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++........++++.+.....+.+++. .+.+|||||....... ...++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~ 74 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI--------TTAYYR 74 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC--------CHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh--------HHHHhc
Confidence 468999999999999999999988876556666676776677776654 6789999997543211 223455
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
.. |++++|+|++++.. ......++..+.... .+.|+++|
T Consensus 75 ~~-d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv 114 (170)
T 1g16_A 75 GA-MGIILVYDITDERT--FTNIKQWFKTVNEHANDEAQLLLV 114 (170)
T ss_dssp TE-EEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred cC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCcEEEE
Confidence 55 99999999987432 222234454444322 36888886
No 57
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=4.6e-13 Score=115.26 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=71.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
...+|+++|.+|||||||+|+|++.... ....++++.+.....+..++. .+++|||||.... ......+
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~--------~~~~~~~ 80 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF--------RSVTHAY 80 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH--------HHHHHHH
Confidence 4578999999999999999999988764 344555666666656566664 7899999996431 1122334
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
+... |++++|+|++++.. ......++..+.... .+.|+++|
T Consensus 81 ~~~~-d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv 122 (180)
T 2g6b_A 81 YRDA-HALLLLYDVTNKAS--FDNIQAWLTEIHEYAQHDVALMLL 122 (180)
T ss_dssp GGGC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred ccCC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCcEEEE
Confidence 4454 99999999988432 222233444443322 47898887
No 58
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.42 E-value=6.9e-13 Score=113.70 Aligned_cols=110 Identities=20% Similarity=0.150 Sum_probs=72.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........++++.+.....+..++ ..+.+|||||.... ......++
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~ 85 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF--------RAVTRSYY 85 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT--------CHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh--------hhhHHHHh
Confidence 457899999999999999999998775433333333344444455554 47899999996432 11234455
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
... |++++|+|+++.. +......++..+.... .+.|+++|
T Consensus 86 ~~~-d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv 126 (179)
T 1z0f_A 86 RGA-AGALMVYDITRRS--TYNHLSSWLTDARNLTNPNTVIILI 126 (179)
T ss_dssp HTC-SEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred ccC-CEEEEEEeCcCHH--HHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 665 9999999998843 2233334555444322 46888886
No 59
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.42 E-value=9.3e-13 Score=115.96 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=75.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
..++|+++|.+|||||||+|+|++... ...+++|+.......+.+++. .+.+|||||..... .....++
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 83 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--------AIRDNYF 83 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH--------HHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH--------HHHHHHH
Confidence 457899999999999999999998774 345556666665566666664 68899999975321 1233445
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
... |++++|+|+++.. +......++..+.... .+.|+++|
T Consensus 84 ~~~-~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv 125 (206)
T 2bov_A 84 RSG-EGFLCVFSITEME--SFAATADFREQILRVKEDENVPFLLV 125 (206)
T ss_dssp HHC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHTTCSCCCEEEE
T ss_pred hhC-CEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 555 9999999998743 2333344555554432 37898887
No 60
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.42 E-value=4.6e-13 Score=114.77 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=75.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++........++++.+.....+.+++. .+++|||||...... ....++.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~~~ 85 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIR 85 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG--------GSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH--------HHHHHhc
Confidence 468999999999999999999987766556667777777777777664 789999999643211 1223445
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
.. |++++|+|++++.. ......++..+... -.+.|+++|
T Consensus 86 ~~-d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv 125 (179)
T 2y8e_A 86 DS-TVAVVVYDITNTNS--FHQTSKWIDDVRTERGSDVIIMLV 125 (179)
T ss_dssp TC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHHTTSSEEEEE
T ss_pred CC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCcEEEE
Confidence 55 99999999987432 22333445444322 136888876
No 61
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.41 E-value=5.9e-13 Score=118.85 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=74.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec------------CceEEEEeCCCCCCCCcchHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK------------YLRWQVIDTPGILDHSLEDRN 304 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~------------~~~~~liDTPG~~~~~~~~~~ 304 (358)
...+|+++|.+|||||||+|+|++........++.+.+.....+.+. ...+++|||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------- 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-------- 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH--------
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH--------
Confidence 45789999999999999999999877644333433444444444444 3478999999962
Q ss_pred HHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 305 IIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 305 ~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
.....+..++... |++++|+|+++.. +......++..+.... .++|+++|
T Consensus 96 ~~~~~~~~~~~~~-d~iilV~D~~~~~--s~~~~~~~l~~i~~~~~~~~~piilV 147 (217)
T 2f7s_A 96 RFRSLTTAFFRDA-MGFLLMFDLTSQQ--SFLNVRNWMSQLQANAYCENPDIVLI 147 (217)
T ss_dssp HHHHHHHHHHTTC-CEEEEEEETTCHH--HHHHHHHHHHTCCCCCTTTCCEEEEE
T ss_pred hHHhHHHHHhcCC-CEEEEEEECcCHH--HHHHHHHHHHHHHHhcCcCCCCEEEE
Confidence 2333344556665 9999999998743 3334445666665432 57898887
No 62
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.41 E-value=5.9e-13 Score=118.11 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=70.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++..+.....++.+.+.....+.+++ ..+++|||||... .......++
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~ 99 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER--------FRTITQSYY 99 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGG--------GHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh--------HHHHHHHHH
Confidence 457899999999999999999998776444444444556566666666 4789999999742 122234455
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
... |++++|+|+++... .+....++..+.... .+.|+++|
T Consensus 100 ~~~-d~iilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~piilv 140 (201)
T 2hup_A 100 RSA-NGAILAYDITKRSS--FLSVPHWIEDVRKYAGSNIVQLLI 140 (201)
T ss_dssp TTC-SEEEEEEETTBHHH--HHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred hhC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCEEEE
Confidence 555 99999999987432 333334555554322 46888876
No 63
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.41 E-value=2.6e-13 Score=117.88 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=72.8
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
....+|+++|.+|||||||+|+|++.... ..+ |.+.....+.+++..+++|||||...... ....++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 86 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP----TIGSNVEEIVINNTRFLMWDIGGQESLRS--------SWNTYY 86 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEEC----CSSSSCEEEEETTEEEEEEEESSSGGGTC--------GGGGGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCC----cCceeeEEEEECCEEEEEEECCCCHhHHH--------HHHHHh
Confidence 45679999999999999999999987762 222 22333445667788999999999853221 112234
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
... |++++|+|+++.. +......++..+... ..++|+++|
T Consensus 87 ~~~-d~ii~v~D~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv 128 (181)
T 2h17_A 87 TNT-EFVIVVVDSTDRE--RISVTREELYKMLAHEDLRKAGLLIF 128 (181)
T ss_dssp TTC-CEEEEEEETTCTT--THHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred ccC-CEEEEEEECCCHH--HHHHHHHHHHHHHhChhhCCCeEEEE
Confidence 444 9999999999853 444445566655432 357898887
No 64
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.40 E-value=8.9e-13 Score=112.33 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=73.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.+|||||||+|+|++.... ...| |.+.....+.+++..+++|||||...... ....++..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~~~~ 74 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIP--TIGFNVETVTYKNLKFQVWDLGGLTSIRP--------YWRCYYSN 74 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCC--CSSEEEEEEEETTEEEEEEEECCCGGGGG--------GGGGGCTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCC--cCccceEEEEECCEEEEEEECCCChhhhH--------HHHHHhcc
Confidence 4678999999999999999999876643 1222 44566667778888999999999853211 11223344
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
. |++++|+|++++.. ......++..+... ..++|+++|
T Consensus 75 ~-d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv 114 (171)
T 1upt_A 75 T-DAVIYVVDSCDRDR--IGISKSELVAMLEEEELRKAILVVF 114 (171)
T ss_dssp C-SEEEEEEETTCCTT--HHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred C-CEEEEEEECCCHHH--HHHHHHHHHHHHhchhhCCCEEEEE
Confidence 4 99999999998653 34444455554332 257898887
No 65
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.40 E-value=8.2e-13 Score=113.78 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=73.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........++.+.+.....+.+.+ ..+++|||||..... ......+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~ 82 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--------SLAPMYY 82 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG--------GGTHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh--------hhhHHHh
Confidence 456899999999999999999998876544444444445455555554 378999999964321 1123345
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
... |++++|+|++++. +.+....++..+.... .+.|+++|
T Consensus 83 ~~~-d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~i~v 123 (181)
T 2efe_B 83 RGA-AAAIIVFDVTNQA--SFERAKKWVQELQAQGNPNMVMALA 123 (181)
T ss_dssp TTC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred ccC-CEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 555 9999999998743 2333445555554432 36788876
No 66
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=1.4e-13 Score=134.18 Aligned_cols=90 Identities=21% Similarity=0.311 Sum_probs=65.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC-----------------ceEEEEeCCCCCCCCcc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY-----------------LRWQVIDTPGILDHSLE 301 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~-----------------~~~~liDTPG~~~~~~~ 301 (358)
.+|++||.||||||||+|+|++....++++||||.++..+.+.+.+ ..+++|||||+......
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 4799999999999999999999888889999999999888887765 46999999999764211
Q ss_pred hHHHHHHHHHHHHhhcccEEEEEEeCCCC
Q psy15712 302 DRNIIEMQAVTALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 302 ~~~~ie~~~~~~l~~~~d~iL~VvD~s~~ 330 (358)
.. .+...+...++.. |++++|+|+++.
T Consensus 83 ~~-gl~~~fl~~ir~a-d~il~VvD~~~~ 109 (363)
T 1jal_A 83 GE-GLGNKFLANIRET-DAIGHVVRCFEN 109 (363)
T ss_dssp HG-GGTCCHHHHHHTC-SEEEEEEECSCC
T ss_pred cc-hHHHHHHHHHHhc-CeEEEEEecCCC
Confidence 11 1111233455666 999999999973
No 67
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.40 E-value=1.3e-12 Score=115.33 Aligned_cols=110 Identities=18% Similarity=0.174 Sum_probs=72.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........+..+.+.....+...+ ..+++|||||.... ......++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~ 78 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY--------RTITTAYY 78 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHHTTG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh--------cchHHHhh
Confidence 356899999999999999999998876443334334444444444444 47899999998421 12233444
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
... |++++|+|++++. +......++..+.... .+.|+++|
T Consensus 79 ~~~-d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv 119 (203)
T 1zbd_A 79 RGA-MGFILMYDITNEE--SFNAVQDWSTQIKTYSWDNAQVLLV 119 (203)
T ss_dssp GGC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHSCSSCEEEEE
T ss_pred cCC-CEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 555 9999999998743 2333344555554422 46898887
No 68
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=1.8e-13 Score=135.18 Aligned_cols=89 Identities=29% Similarity=0.458 Sum_probs=47.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe---------------------c---CceEEEEeCCCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY---------------------K---YLRWQVIDTPGI 295 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~---------------------~---~~~~~liDTPG~ 295 (358)
+|+++|.||||||||+|+|++....++++||||.++..+...+ + ..++++|||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 6899999999999999999998877889999999988886432 2 247899999999
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCC
Q psy15712 296 LDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 296 ~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~ 330 (358)
......... +...+..+++.. |++++|+|+++.
T Consensus 82 ~~~a~~~~~-l~~~~l~~i~~a-D~il~VvD~~~~ 114 (397)
T 1wxq_A 82 VPGAHEGRG-LGNKFLDDLRMA-SALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTC-SEEEEEEETTCC
T ss_pred ccchhhhhh-HHHHHHHHHhcC-CEEEEEEecccc
Confidence 753222111 111112233444 999999999874
No 69
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.40 E-value=3.4e-13 Score=114.85 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=71.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........++.+.+.....+.+++. .+++|||||..+.. ......+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~ 76 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH--------ALGPIYY 76 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------------CCSS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh--------hhHHHHh
Confidence 3568999999999999999999987765555565566666566666554 67899999964321 1111233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
... |++++|+|+++.. +......++..+.... .+.|+++|
T Consensus 77 ~~~-d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv 117 (170)
T 1z08_A 77 RDS-NGAILVYDITDED--SFQKVKNWVKELRKMLGNEICLCIV 117 (170)
T ss_dssp TTC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHHGGGSEEEEE
T ss_pred ccC-CEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 344 9999999998743 2333334555444321 36788876
No 70
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.40 E-value=1.5e-12 Score=109.84 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=70.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++..... .+..++.+.....+.+++. .+++|||||.... .......+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~ 73 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF--------ASMRDLYIK 73 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC--------HHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECCEEEEEEEEECCCchhh--------HHHHHHHhc
Confidence 4689999999999999999999776532 3333444444555556654 4889999997432 112233455
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
.. |++++|+|+++.. +......++..+... ..+.|+++|
T Consensus 74 ~~-~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv 114 (167)
T 1kao_A 74 NG-QGFILVYSLVNQQ--SFQDIKPMRDQIIRVKRYEKVPVILV 114 (167)
T ss_dssp HC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred cC-CEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 55 9999999998743 223333444444332 237898887
No 71
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.40 E-value=1.2e-12 Score=113.05 Aligned_cols=109 Identities=19% Similarity=0.146 Sum_probs=73.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++... ...++.|+.......+.+.+. .+.+|||||.... ......++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~ 87 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY--------AAIRDNYF 87 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC--------HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc--------HHHHHHHh
Confidence 357899999999999999999998764 334555665555555666664 6889999997532 11233445
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
... |++++|+|+++.. +......++..+.... .++|+++|
T Consensus 88 ~~~-d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv 129 (187)
T 2a9k_A 88 RSG-EGFLCVFSITEME--SFAATADFREQILRVKEDENVPFLLV 129 (187)
T ss_dssp HHC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHHCCTTCCEEEE
T ss_pred ccC-CEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 555 9999999998743 2233334455544322 26888886
No 72
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.40 E-value=2e-12 Score=120.82 Aligned_cols=117 Identities=20% Similarity=0.178 Sum_probs=70.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCC--------CcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcch----
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPY--------AFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLED---- 302 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~--------~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~---- 302 (358)
...+|+++|.+|+|||||+|+|++.......+ ++++.+.....+..++. .+.+|||||+.+.....
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 35789999999999999999999988665544 23333334344444443 78999999997552211
Q ss_pred --HHHHHHHHHHHHhh------------cccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 303 --RNIIEMQAVTALAH------------LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 303 --~~~ie~~~~~~l~~------------~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
...++.+...++.. ..|+++|+++.+..... .....+++.+.. ++|+|+|+
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~--~~d~~~l~~l~~---~~pvi~V~ 151 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK--PLDIEFMKRLHE---KVNIIPLI 151 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC--HHHHHHHHHHTT---TSCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC--HHHHHHHHHHhc---cCCEEEEE
Confidence 12223333444443 13688999987653222 234567777765 68988874
No 73
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.40 E-value=1.1e-12 Score=113.69 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=72.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCce--EEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLR--WQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~--~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++... ...+++|+.+.......+++.. +.+|||||...... ....++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 73 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA--------MRDQYM 73 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT--------THHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH--------HHHHHH
Confidence 356899999999999999999998764 3455666666666666676654 67899999754321 122344
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
... |++++|+|+++.. +......++..+... ..+.|+++|
T Consensus 74 ~~~-~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~i~v 115 (189)
T 4dsu_A 74 RTG-EGFLCVFAINNTK--SFEDIHHYREQIKRVKDSEDVPMVLV 115 (189)
T ss_dssp HHC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHTTCSCCCEEEE
T ss_pred hcC-CEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 454 9999999998743 223333344444331 246898887
No 74
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.40 E-value=1.2e-12 Score=111.32 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=69.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++........+....+.......+.+ ..+.+|||||..... ......+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~~~ 77 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR--------ALAPMYYR 77 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG--------GGTHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh--------cccHhhCc
Confidence 46899999999999999999998775332223222223333344443 578999999984321 11233455
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
.. |++++|+|++++.. ......++..+... ..+.|+++|
T Consensus 78 ~~-~~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~~iilv 117 (170)
T 1z0j_A 78 GS-AAAIIVYDITKEET--FSTLKNWVRELRQHGPPSIVVAIA 117 (170)
T ss_dssp TC-SEEEEEEETTCHHH--HHHHHHHHHHHHHHSCTTSEEEEE
T ss_pred CC-CEEEEEEECcCHHH--HHHHHHHHHHHHHhCCCCCcEEEE
Confidence 55 99999999987432 23333455555432 346788776
No 75
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.39 E-value=1.9e-13 Score=118.30 Aligned_cols=110 Identities=12% Similarity=0.152 Sum_probs=58.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++..+.....|+++.+.....+.+++ ..+++|||||..... .....++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 78 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYY 78 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------------CCTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhh--------hhHHHHH
Confidence 357899999999999999999998776555566667677766777776 578999999974321 1122233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
... |++++|+|++++. +.+....++..+... ..+.|+++|
T Consensus 79 ~~~-d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv 119 (183)
T 2fu5_C 79 RGA-MGIMLVYDITNEK--SFDNIRNWIRNIEEHASADVEKMIL 119 (183)
T ss_dssp TTC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred hcC-CEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 444 9999999998843 233334466655442 236788886
No 76
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.39 E-value=9.7e-13 Score=112.05 Aligned_cols=110 Identities=15% Similarity=0.018 Sum_probs=65.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++........+.+|.+.....+.+++. .+++|||||....... ....++.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~ 74 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW-------LQDHCLQ 74 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC---------------CHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh-------hhhhhhc
Confidence 357999999999999999999987765445555666677666667664 6679999998543210 1112344
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
.. |++++|+|++++. +......++..+.... .+.|+++|
T Consensus 75 ~~-d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ilv 115 (169)
T 3q85_A 75 TG-DAFLIVFSVTDRR--SFSKVPETLLRLRAGRPHHDLPVILV 115 (169)
T ss_dssp HC-SEEEEEEETTCHH--HHHTHHHHHHHHHHHSTTSCCCEEEE
T ss_pred cC-CEEEEEEECCChH--HHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 44 9999999998843 2333334555554332 37898887
No 77
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.39 E-value=7.4e-13 Score=117.16 Aligned_cols=112 Identities=13% Similarity=0.016 Sum_probs=76.0
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
....+|+++|.+|||||||+|+|++........+++|.+.....+.+++. .+++|||||..... .. ....+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----~~---~~~~~ 93 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG----GW---LRDHC 93 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG----HH---HHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch----hh---hHHHh
Confidence 45679999999999999999999876554455667777777777777765 56889999985321 11 12233
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
+... |++++|+|+++... ......++..+.... .+.|+++|
T Consensus 94 ~~~~-d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv 136 (195)
T 3cbq_A 94 LQTG-DAFLIVFSVTDRRS--FSKVPETLLRLRAGRPHHDLPVILV 136 (195)
T ss_dssp HHHC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHSTTSCCCEEEE
T ss_pred hccC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4444 99999999987443 223334555554322 36898886
No 78
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.39 E-value=5.3e-13 Score=116.89 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=72.1
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
...++|+++|.+|||||||+|+|++.......+.. |.+.....+...+..+++|||||...... ....++.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 85 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGRVAFTVFDMGGAKKFRG--------LWETYYD 85 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETTEEEEEEEECCSGGGGG--------GGGGGCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCCEEEEEEECCCCHhHHH--------HHHHHHh
Confidence 45679999999999999999999998865422222 34455666677788999999999853211 1122344
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--C-------CCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--F-------NNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f-------~~kPvilv 357 (358)
.. |++++|+|+++.. +......++..+... . .+.|+++|
T Consensus 86 ~~-d~ii~v~D~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 133 (199)
T 4bas_A 86 NI-DAVIFVVDSSDHL--RLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFF 133 (199)
T ss_dssp TC-SEEEEEEETTCGG--GHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEE
T ss_pred cC-CEEEEEEECCcHH--HHHHHHHHHHHHHhChhhhhcccccCCCCEEEE
Confidence 44 9999999999854 334434455554332 1 26888887
No 79
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=1.1e-12 Score=114.31 Aligned_cols=109 Identities=20% Similarity=0.187 Sum_probs=74.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++........++.+.+.....+.+.+ ..+.+|||||...... ....++.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 86 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT--------LTPSYYR 86 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC--------SHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhHHHhc
Confidence 46899999999999999999998876544445444455555555554 4789999999753221 1233455
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
.. |++++|+|++++. +......++..+.... .++|+++|
T Consensus 87 ~~-d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ilv 127 (195)
T 1x3s_A 87 GA-QGVILVYDVTRRD--TFVKLDNWLNELETYCTRNDIVNMLV 127 (195)
T ss_dssp TC-CEEEEEEETTCHH--HHHTHHHHHHHHTTCCSCSCCEEEEE
T ss_pred cC-CEEEEEEECcCHH--HHHHHHHHHHHHHHhcCcCCCcEEEE
Confidence 55 9999999998743 2233345666665532 46888876
No 80
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.39 E-value=1.8e-12 Score=109.93 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=69.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec--CceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK--YLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++........+..+.+.....+.+. +..+++|||||..... .....++.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~ 77 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH--------SLAPMYYR 77 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG--------GGHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh--------hhhHHhcc
Confidence 5689999999999999999999876543222332333333334444 3478999999974321 11233455
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
.. |++++|+|++++. +......++..+... ..+.|+++|
T Consensus 78 ~~-d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iilv 117 (170)
T 1r2q_A 78 GA-QAAIVVYDITNEE--SFARAKNWVKELQRQASPNIVIALS 117 (170)
T ss_dssp TC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CC-CEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 55 9999999998743 233334455555432 246788876
No 81
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.38 E-value=5.4e-13 Score=118.17 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=68.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........++.+.+.....+.+++ ..+++|||||.... ......++
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~~~~~~ 95 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF--------RSVTRSYY 95 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHH--------SCCCHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhH--------HHHHHHHh
Confidence 457899999999999999999998876655556666666666666666 57899999996321 11123345
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
... |++++|+|+++... ......++..+... ..+.|+++|
T Consensus 96 ~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piilv 136 (200)
T 2o52_A 96 RGA-AGALLVYDITSRET--YNSLAAWLTDARTLASPNIVVILC 136 (200)
T ss_dssp TTC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHTCTTCEEEEE
T ss_pred ccC-CEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCcEEEE
Confidence 555 99999999988432 23333455555332 246888886
No 82
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.38 E-value=5.6e-13 Score=116.54 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=74.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.+|||||||+|+|++.......+. .|.+.....+.+++..+.+|||||...... ....++..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 90 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSSSLSFTVFDMSGQGRYRN--------LWEHYYKE 90 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECSSCEEEEEEECCSTTTGG--------GGGGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEECCEEEEEEECCCCHHHHH--------HHHHHHhc
Confidence 467999999999999999999998773322322 355667777788888999999999754211 11223445
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--C--CCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--F--NNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f--~~kPvilv 357 (358)
. |++++|+|+++.. +......++..+... . .++|+++|
T Consensus 91 ~-d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~piilv 132 (190)
T 2h57_A 91 G-QAIIFVIDSSDRL--RMVVAKEELDTLLNHPDIKHRRIPILFF 132 (190)
T ss_dssp C-SEEEEEEETTCHH--HHHHHHHHHHHHHHSTTTTTSCCCEEEE
T ss_pred C-CEEEEEEECCCHH--HHHHHHHHHHHHHhChhhccCCCeEEEE
Confidence 4 9999999998742 233333455554332 1 47898887
No 83
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.38 E-value=3.9e-13 Score=115.59 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=67.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec---CceEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK---YLRWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
...+|+++|.+|||||||+|+|++........++++.+.....+.++ ...+++|||||.... .......
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~ 78 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF--------QSLGVAF 78 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------CC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHh--------hhhhHHH
Confidence 46789999999999999999999877654445555566666666655 247899999996321 1112223
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-----CCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-----FNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-----f~~kPvilv 357 (358)
+... |++++|+|+++... ......++..+... ..+.|+++|
T Consensus 79 ~~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~p~ilv 124 (182)
T 1ky3_A 79 YRGA-DCCVLVYDVTNASS--FENIKSWRDEFLVHANVNSPETFPFVIL 124 (182)
T ss_dssp STTC-CEEEEEEETTCHHH--HHTHHHHHHHHHHHHCCSCTTTCCEEEE
T ss_pred hhcC-CEEEEEEECCChHH--HHHHHHHHHHHHHHhcccCcCCCcEEEE
Confidence 3444 99999999988432 22233344443321 146788886
No 84
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.38 E-value=2.4e-12 Score=113.29 Aligned_cols=108 Identities=16% Similarity=0.222 Sum_probs=72.9
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
....+|+++|.+|||||||+|+|++.... ... .|.+.....+.+.+..+.+|||||..... .....++.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~ 95 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKNICFTVWDVGGQDKIR--------PLWRHYFQ 95 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEE--EETTEEEEEEEETTEEEEEEECC-----C--------TTHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccC--CcCceeEEEEEECCEEEEEEECCCCHhHH--------HHHHHHhc
Confidence 35679999999999999999999987653 222 25556666777788899999999985321 11233455
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
.. |++++|+|++++. +......++..+.. ...+.|+++|
T Consensus 96 ~~-d~iilv~D~~~~~--s~~~~~~~l~~~~~~~~~~~~piilv 136 (192)
T 2b6h_A 96 NT-QGLIFVVDSNDRE--RVQESADELQKMLQEDELRDAVLLVF 136 (192)
T ss_dssp TC-CEEEEEEETTCGG--GHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred cC-CEEEEEEECCCHH--HHHHHHHHHHHHhcccccCCCeEEEE
Confidence 55 9999999998853 34444456655543 2347898887
No 85
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.37 E-value=2.2e-12 Score=114.11 Aligned_cols=110 Identities=14% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........++.+.+.....+.+++. .+++|||||....... ...++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 78 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI--------TSSYY 78 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC--------CGGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH--------HHHhc
Confidence 3578999999999999999999988876555666676776667777664 7899999997543211 11234
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
... |++++|+|++++. +......++..+... ..+.|+++|
T Consensus 79 ~~~-d~vilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv 119 (206)
T 2bcg_Y 79 RGS-HGIIIVYDVTDQE--SFNGVKMWLQEIDRYATSTVLKLLV 119 (206)
T ss_dssp TTC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred cCC-CEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 444 9999999998843 233333455555432 236788876
No 86
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=114.75 Aligned_cols=110 Identities=18% Similarity=0.103 Sum_probs=66.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........+..+.+.....+.+++ ..+++|||||.... ......++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~ 98 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF--------RSIAKSYF 98 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC--------HHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch--------hhhHHHHH
Confidence 457999999999999999999998775422233333334444445554 46899999997432 12233455
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
... |++++|+|+++... ......++..+.... .+.|+++|
T Consensus 99 ~~~-d~iilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv 139 (199)
T 2p5s_A 99 RKA-DGVLLLYDVTCEKS--FLNIREWVDMIEDAAHETVPIMLV 139 (199)
T ss_dssp HHC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHC---CCEEEE
T ss_pred hhC-CEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCCEEEE
Confidence 555 99999999987432 222233444443321 36888886
No 87
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.37 E-value=4e-13 Score=132.25 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=54.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc-----------------eEEEEeCCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL-----------------RWQVIDTPGILDHS 299 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTPG~~~~~ 299 (358)
...+|+++|.||||||||+|+|++..+.++++||||.++..+.+.+.+. .+++|||||+....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3568999999999999999999999888899999999999998877542 48999999998643
Q ss_pred cchHHHHHHHHHHHHhhcccEEEEEEeCCCC
Q psy15712 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 300 ~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~ 330 (358)
... ..+...+...++.. |++++|+|+++.
T Consensus 101 s~~-~glg~~~l~~ir~a-D~Il~VvD~~~~ 129 (396)
T 2ohf_A 101 HNG-QGLGNAFLSHISAC-DGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTS-SSEEEEEEC---
T ss_pred chh-hHHHHHHHHHHHhc-CeEEEEEecCCC
Confidence 221 11222345566666 999999999863
No 88
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=1.3e-12 Score=116.38 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=75.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++..+.....++.+.+.....+.+++. .+++|||||... +......++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~ 96 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER--------FRSITQSYY 96 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG--------GHHHHGGGS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH--------HHHHHHHHH
Confidence 3578999999999999999999988766555666666776667777764 689999999732 122233344
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
+.. |++++|+|+++... .+....++..+.... .+.|+++|
T Consensus 97 ~~~-d~~i~v~D~~~~~s--~~~~~~~~~~i~~~~~~~~piilv 137 (201)
T 2ew1_A 97 RSA-NALILTYDITCEES--FRCLPEWLREIEQYASNKVITVLV 137 (201)
T ss_dssp TTC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred hcC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCEEEE
Confidence 444 99999999987432 222234455443321 36788876
No 89
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.37 E-value=3.1e-13 Score=116.09 Aligned_cols=86 Identities=15% Similarity=0.080 Sum_probs=62.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC---ceEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY---LRWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~---~~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
...+|+++|.+|||||||+|+|++........|+++.+.....+.+.+ ..+++|||||...... ....+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~ 76 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK--------MLDKY 76 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT--------THHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc--------hhhHH
Confidence 457899999999999999999998765433334445566666777766 5889999999754321 12234
Q ss_pred HhhcccEEEEEEeCCCCC
Q psy15712 314 LAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~ 331 (358)
+... |++++|+|++++.
T Consensus 77 ~~~~-d~~i~v~d~~~~~ 93 (178)
T 2hxs_A 77 IYGA-QGVLLVYDITNYQ 93 (178)
T ss_dssp HTTC-SEEEEEEETTCHH
T ss_pred HhhC-CEEEEEEECCCHH
Confidence 5555 9999999998843
No 90
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=2.3e-12 Score=109.45 Aligned_cols=110 Identities=14% Similarity=0.101 Sum_probs=66.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++........+... ..........+ ..+++|||||..+.. .....++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~~~ 73 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSHQFP--------AMQRLSIS 73 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC-EEEEEEEEETTEEEEEEEEECCSCSSCH--------HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc-ccEEEEEEECCEEEEEEEEECCCchhhH--------HHHHHhcc
Confidence 46899999999999999999998765432222221 22222233333 368999999975421 12333455
Q ss_pred hcccEEEEEEeCCCCCCC-CHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGH-SIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~-~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.. |++++|+|++++... .....+..+.+......++|+++|
T Consensus 74 ~~-~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v 115 (172)
T 2erx_A 74 KG-HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLV 115 (172)
T ss_dssp HC-SEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEE
T ss_pred cC-CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 55 999999999874322 112223333443333357898886
No 91
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.37 E-value=2.2e-12 Score=113.56 Aligned_cols=110 Identities=16% Similarity=0.071 Sum_probs=70.7
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
....+|+++|.+|||||||+|+|++... ...+++|+.+.....+.+++. .+++|||||....... ...+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 88 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL--------RPLC 88 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS--------GGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH--------hHhh
Confidence 3567999999999999999999998763 345556666666666666664 5679999998643211 1123
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
+... |++++|+|+++... ..... .++..+.....+.|+++|
T Consensus 89 ~~~~-~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv 130 (201)
T 2q3h_A 89 YTNT-DIFLLCFSVVSPSS--FQNVSEKWVPEIRCHCPKAPIILV 130 (201)
T ss_dssp GTTC-SEEEEEEETTCHHH--HHHHHHTHHHHHHHHCSSSCEEEE
T ss_pred cCCC-cEEEEEEECCCHHH--HHHHHHHHHHHHHHhCCCCCEEEE
Confidence 3444 99999999987432 23322 456666554557898887
No 92
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.37 E-value=1.4e-12 Score=114.16 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=71.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........+..+.+.....+..++ ..+++|||||...... ....++
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 95 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA--------ITSAYY 95 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT--------THHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHHHh
Confidence 457899999999999999999998776533333333333333444433 4789999999854321 122345
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
... |++++|+|++++.. ......++..+.... .+.|+++|
T Consensus 96 ~~~-d~vi~v~D~~~~~s--~~~~~~~l~~i~~~~~~~~piilv 136 (193)
T 2oil_A 96 RGA-VGALLVFDLTKHQT--YAVVERWLKELYDHAEATIVVMLV 136 (193)
T ss_dssp TTC-CEEEEEEETTCHHH--HHTHHHHHHHHHTTSCTTCEEEEE
T ss_pred ccC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 555 99999999987432 223344565554432 46888886
No 93
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.36 E-value=5.2e-13 Score=115.38 Aligned_cols=107 Identities=19% Similarity=0.190 Sum_probs=71.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.+|||||||+|+|++.... ... .|.+.....+.+++..+.+|||||....... ...++..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~ 85 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVV-TTK--PTIGFNVETLSYKNLKLNVWDLGGQTSIRPY--------WRCYYAD 85 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEE-EEC--SSTTCCEEEEEETTEEEEEEEEC----CCTT--------GGGTTTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcC-ccC--CcCccceEEEEECCEEEEEEECCCCHhHHHH--------HHHHhcc
Confidence 5689999999999999999999976652 111 1333445566677889999999998643211 1123344
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
. |++++|+|++++. +......++..+... ..++|+++|
T Consensus 86 ~-d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv 125 (183)
T 1moz_A 86 T-AAVIFVVDSTDKD--RMSTASKELHLMLQEEELQDAALLVF 125 (183)
T ss_dssp E-EEEEEEEETTCTT--THHHHHHHHHHHTTSSTTSSCEEEEE
T ss_pred C-CEEEEEEECCCHH--HHHHHHHHHHHHHcChhhCCCeEEEE
Confidence 4 9999999998853 444555566666543 357898887
No 94
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.36 E-value=1.7e-12 Score=111.37 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=73.4
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
...++|+++|.+|||||||+|+|++.... ..++.|+.......+.+++. .+.+|||||....... ...+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------~~~~ 77 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM--------REQY 77 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC--------HHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCc-cccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH--------HHHH
Confidence 45679999999999999999999987543 34555665555566666664 6789999997543211 1234
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
+... |++++|+|+++... ......++..+.. ...+.|+++|
T Consensus 78 ~~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv 120 (181)
T 2fn4_A 78 MRAG-HGFLLVFAINDRQS--FNEVGKLFTQILRVKDRDDFPVVLV 120 (181)
T ss_dssp HHHC-SEEEEEEETTCHHH--HHHHHHHHHHHHHHHTSSCCCEEEE
T ss_pred HhhC-CEEEEEEeCCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4454 99999999988432 2333344444422 1236888887
No 95
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.36 E-value=3.6e-13 Score=118.91 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=73.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........++++.+.....+.+++ ..+++|||||....... ...++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 78 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL--------GVAFY 78 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS--------CCGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh--------HHHHH
Confidence 457899999999999999999998876555556666666666666665 37899999997432211 11233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-----CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-----NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-----~~kPvilv 357 (358)
... |++++|+|++++.. ......++..+.... .+.|+++|
T Consensus 79 ~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~piilv 123 (207)
T 1vg8_A 79 RGA-DCCVLVFDVTAPNT--FKTLDSWRDEFLIQASPRDPENFPFVVL 123 (207)
T ss_dssp TTC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHHCCSSGGGSCEEEE
T ss_pred hCC-cEEEEEEECCCHHH--HHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 444 99999999987432 222223444333211 36788876
No 96
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=115.97 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=62.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++.... ..+..|+.......+.+++. .+++|||||.... ......++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~~~~~~ 103 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY--------DRLRPLFY 103 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCchhh--------hHHHHHHh
Confidence 4578999999999999999999987653 23334444444445555554 6899999997432 11222344
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|+++.. +..... .++..+.....+.|+++|
T Consensus 104 ~~~-d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv 144 (214)
T 2j1l_A 104 PDA-SVLLLCFDVTSPN--SFDNIFNRWYPEVNHFCKKVPIIVV 144 (214)
T ss_dssp -CE-EEEEEEEETTCHH--HHHHHHHTHHHHHHHHCSSCCEEEE
T ss_pred ccC-CEEEEEEECcCHH--HHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 454 9999999998743 233322 356666554457898887
No 97
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.36 E-value=9.4e-13 Score=115.33 Aligned_cols=111 Identities=19% Similarity=0.114 Sum_probs=73.0
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
....+|+++|.+|||||||+|+|++........++.+.+.....+.+++. .+++|||||....... ...+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 90 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI--------TRSY 90 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC--------CHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh--------HHHH
Confidence 34568999999999999999999988765444555555566666666653 7899999997543211 2234
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
+... |++++|+|+++.. +.+....++..+... ..+.|+++|
T Consensus 91 ~~~~-d~ii~v~d~~~~~--s~~~~~~~l~~i~~~~~~~~piilv 132 (191)
T 2a5j_A 91 YRGA-AGALLVYDITRRE--TFNHLTSWLEDARQHSSSNMVIMLI 132 (191)
T ss_dssp HTTC-SEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred hccC-CEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 5555 9999999998743 223333455555432 246888886
No 98
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=1.7e-12 Score=113.84 Aligned_cols=110 Identities=19% Similarity=0.135 Sum_probs=70.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc--ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD--VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~--v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++.... ..+..++|.......+......+++|||||..... .....++
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~ 93 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH--------SLAPMYY 93 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG--------GGTHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH--------hhhHHhh
Confidence 4578999999999999999999987743 33444444333322222234578999999964321 1122345
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
... |++++|+|++++. +......++..+.... .+.|+++|
T Consensus 94 ~~~-d~iilV~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv 134 (192)
T 2fg5_A 94 RGS-AAAVIVYDITKQD--SFYTLKKWVKELKEHGPENIVMAIA 134 (192)
T ss_dssp TTC-SEEEEEEETTCTH--HHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred ccC-CEEEEEEeCCCHH--HHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 555 9999999998843 3333344555554322 36888886
No 99
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.35 E-value=1.7e-12 Score=114.12 Aligned_cols=107 Identities=9% Similarity=0.134 Sum_probs=73.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
+..+|+++|.+|||||||+|+|++.... .+ ..|.+...+.+.+++..+++|||||....... ...++..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~ 90 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGNIKFTTFDLGGHIQARRL--------WKDYFPE 90 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETTEEEEEEECCCSGGGTTS--------GGGGCTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECCEEEEEEECCCCHHHHHH--------HHHHHhc
Confidence 3568999999999999999999987653 11 23455566777888889999999998543211 1123344
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
. |++++|+|+++.. +.+....++..+.. ...++|+++|
T Consensus 91 ~-d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv 130 (190)
T 1m2o_B 91 V-NGIVFLVDAADPE--RFDEARVELDALFNIAELKDVPFVIL 130 (190)
T ss_dssp C-CEEEEEEETTCGG--GHHHHHHHHHHHHTCGGGTTCCEEEE
T ss_pred C-CEEEEEEECCChH--HHHHHHHHHHHHHcchhhcCCCEEEE
Confidence 4 9999999999854 34444455555533 2347898886
No 100
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.35 E-value=1.3e-12 Score=115.70 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=69.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
+..+|+++|.+|||||||+|+|++..+. .+. .|.+...+.+.+++..+++|||||...... .+..+++.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~ 92 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG--QHV-PTLHPTSEELTIAGMTFTTFDLGGHIQARR--------VWKNYLPA 92 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CC--------GGGGGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC--ccC-CCCCceeEEEEECCEEEEEEECCCcHhhHH--------HHHHHHhc
Confidence 4568999999999999999999987653 111 233444567778888999999999754321 11223444
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
. |++++|+|+++.. +......++..+... ..++|+++|
T Consensus 93 ~-d~~i~v~D~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv 132 (198)
T 1f6b_A 93 I-NGIVFLVDCADHE--RLLESKEELDSLMTDETIANVPILIL 132 (198)
T ss_dssp C-SEEEEEEETTCGG--GHHHHHHHHHHHHTCGGGTTSCEEEE
T ss_pred C-CEEEEEEECCCHH--HHHHHHHHHHHHHhCcccCCCcEEEE
Confidence 4 9999999998853 344444555555432 347898886
No 101
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.35 E-value=6.7e-13 Score=116.90 Aligned_cols=110 Identities=17% Similarity=0.212 Sum_probs=50.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcce-eeeEEEEEEecC----ceEEEEeCCCCCCCCcchHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTT-KSLYVGHTDYKY----LRWQVIDTPGILDHSLEDRNIIEMQA 310 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT-~~~~~~~~~~~~----~~~~liDTPG~~~~~~~~~~~ie~~~ 310 (358)
...+|+++|.+|||||||+|+|++.... ...+..|+ .+.....+.+++ ..+++|||||.. ......
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~ 90 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD--------LYKEQI 90 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH--------HHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH--------HHHHHH
Confidence 3568999999999999999999987322 23333343 355666666764 378999999983 122222
Q ss_pred HHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC----CCCeEEEe
Q psy15712 311 VTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF----NNKVGPLE 357 (358)
Q Consensus 311 ~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f----~~kPvilv 357 (358)
..++... |++++|+|++++. +......++..+.... .+.|+++|
T Consensus 91 ~~~~~~~-d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~~piilv 138 (208)
T 2yc2_C 91 SQYWNGV-YYAILVFDVSSME--SFESCKAWFELLKSARPDRERPLRAVLV 138 (208)
T ss_dssp STTCCCC-CEEEEEEETTCHH--HHHHHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred HHHHhhC-cEEEEEEECCCHH--HHHHHHHHHHHHHHhhcccccCCcEEEE
Confidence 2333344 9999999998844 3334445666665432 37898887
No 102
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.35 E-value=3.9e-12 Score=109.49 Aligned_cols=103 Identities=16% Similarity=0.108 Sum_probs=68.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++..... +..|+.+.....+.+++. .+++|||||... ..++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------------~~~~ 70 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-------------AKFS 70 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-------------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch-------------hHHH
Confidence 45789999999999999999999877543 222333334445555554 578999999853 1234
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHH---HHHHHccc-CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIG---LFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~---ll~~i~~~-f~~kPvilv 357 (358)
+.. |++++|+|++++..+ ..... ++..+... ..+.|+++|
T Consensus 71 ~~~-d~~ilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv 114 (178)
T 2iwr_A 71 GWA-DAVIFVFSLEDENSF--QAVSRLHGQLSSLRGEGRGGLALALV 114 (178)
T ss_dssp HHC-SEEEEEEETTCHHHH--HHHHHHHHHHHHHHCSSSCCCEEEEE
T ss_pred HhC-CEEEEEEECcCHHHH--HHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 555 999999999985432 22223 34444332 246898887
No 103
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.35 E-value=9.8e-13 Score=116.96 Aligned_cols=109 Identities=16% Similarity=0.102 Sum_probs=71.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceE--EEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRW--QVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~--~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
+..+|+++|.+|||||||+|++++.... ..+..|+.+.....+.+++..+ ++|||||...... ....++
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~ 99 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR--------LRPLSY 99 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC-C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT--------TGGGGC
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC-CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH--------HHHHHh
Confidence 5679999999999999999999976543 3444556555555666666554 5999999843211 111233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|+++... ..... .++..+.....++|+++|
T Consensus 100 ~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piilv 140 (204)
T 4gzl_A 100 PQT-DVFLICFSLVSPAS--FENVRAKWYPEVRHHCPNTPIILV 140 (204)
T ss_dssp TTC-SEEEEEEETTCHHH--HHHHHHTHHHHHHHHCSSCCEEEE
T ss_pred ccC-CEEEEEEECCCHHH--HHHHHHHHHHHHHHhCCCCCEEEE
Confidence 444 99999999987432 22222 455555554467899887
No 104
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.35 E-value=2.5e-12 Score=108.92 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=68.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++..... .+..|+.........+++. .+++|||||...... .....+.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 73 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA--------MRDLYMK 73 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC-SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT--------HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH--------HHHHHhc
Confidence 4689999999999999999999876532 3333443333444445443 678999999754321 1223445
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
.. |++++|+|++++..+ .....++..+... ..++|+++|
T Consensus 74 ~~-d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv 114 (167)
T 1c1y_A 74 NG-QGFALVYSITAQSTF--NDLQDLREQILRVKDTEDVPMILV 114 (167)
T ss_dssp HC-SEEEEEEETTCHHHH--HTHHHHHHHHHHHHCCSCCCEEEE
T ss_pred cC-CEEEEEEECCCHHHH--HHHHHHHHHHHHhhCcCCCcEEEE
Confidence 55 999999999885322 2222334333321 247898886
No 105
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.35 E-value=9.5e-12 Score=120.60 Aligned_cols=118 Identities=15% Similarity=0.109 Sum_probs=74.0
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCc------ccCCCc----------------------ceeee------------
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVD------VQPYAF----------------------TTKSL------------ 275 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~------v~~~~~----------------------tT~~~------------ 275 (358)
...+.|+++|.+|||||||+|+|+|.++. +...|+ +|.+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34679999999999999999999997752 233343 22220
Q ss_pred -----------EEEEEEe-cCceEEEEeCCCCCCCCc-----chHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHH
Q psy15712 276 -----------YVGHTDY-KYLRWQVIDTPGILDHSL-----EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQ 338 (358)
Q Consensus 276 -----------~~~~~~~-~~~~~~liDTPG~~~~~~-----~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q 338 (358)
....+.. ++..+.+|||||+...+. +....+......++....+++|+|+|++..... .+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~--~~~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLAN--SDA 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGG--CHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccch--hHH
Confidence 0001111 245799999999986432 222234445556666666788889888763322 223
Q ss_pred HHHHHHHcccCCCCeEEEe
Q psy15712 339 IGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 339 ~~ll~~i~~~f~~kPvilv 357 (358)
..++..+.+. ++|+++|
T Consensus 187 ~~i~~~~~~~--~~~~i~V 203 (353)
T 2x2e_A 187 LKVAKEVDPQ--GQRTIGV 203 (353)
T ss_dssp HHHHHHHCTT--CTTEEEE
T ss_pred HHHHHHhCcC--CCceEEE
Confidence 3466666553 6788876
No 106
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.34 E-value=4.8e-12 Score=109.25 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=71.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
..++|+++|.+|||||||+|+|++... ...++.|+.........+++. .+++|||||........ ..++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~ 75 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP--------QTYS 75 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC--------GGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHH--------HHHH
Confidence 357899999999999999999996663 344455555555666666664 56899999986542111 1233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
... |++++|+|+++.. +.+....++..+.... .+.|+++|
T Consensus 76 ~~~-~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ilv 117 (181)
T 3t5g_A 76 IDI-NGYILVYSVTSIK--SFEVIKVIHGKLLDMVGKVQIPIMLV 117 (181)
T ss_dssp TTC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHC----CCEEEE
T ss_pred hcC-CEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 344 9999999998743 2333334554443322 36888886
No 107
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.34 E-value=2e-12 Score=110.52 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=63.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
...+|+++|.+|||||||+|+|++.... ..+.+++| .....+.+++. .+++|||||...... .......
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~ 74 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGEDTTLVVVDTWEAEKLDK------SWSQESC 74 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEEEEEEEECCC-------------CHHHHHT
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEEEEEEEEecCCCCccch------hhhHHhh
Confidence 3568999999999999999999987753 33333333 33444555554 678999999854210 1111122
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
+.. +|++++|+|++++.. ......++..+... ..++|+++|
T Consensus 75 ~~~-~~~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~~piilv 117 (175)
T 2nzj_A 75 LQG-GSAYVIVYSIADRGS--FESASELRIQLRRTHQADHVPIILV 117 (175)
T ss_dssp TTS-CSEEEEEEETTCHHH--HHHHHHHHHHHHHCC----CCEEEE
T ss_pred ccc-CCEEEEEEECCCHHH--HHHHHHHHHHHHHhhccCCCCEEEE
Confidence 333 499999999987442 33333455555432 236898886
No 108
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.34 E-value=1.1e-12 Score=113.25 Aligned_cols=109 Identities=16% Similarity=0.097 Sum_probs=70.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++.... ..+..|+.+.......+++. .+++|||||...... ....++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 74 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR--------LRPLSY 74 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT--------TGGGGC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH--------HHHHhc
Confidence 3568999999999999999999976643 23334444444444555554 567999999853211 111233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
.. +|++++|+|++++.. ..... .++..+.....+.|+++|
T Consensus 75 ~~-~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piilv 115 (186)
T 1mh1_A 75 PQ-TDVSLICFSLVSPAS--FENVRAKWYPEVRHHCPNTPIILV 115 (186)
T ss_dssp TT-CSEEEEEEETTCHHH--HHHHHHTHHHHHHHHSTTSCEEEE
T ss_pred cC-CcEEEEEEECCChhh--HHHHHHHHHHHHHHhCCCCCEEEE
Confidence 34 499999999987432 22222 355555544457898886
No 109
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=4.8e-12 Score=110.72 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=68.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........+. ...........++ ..+++|||||..... .....++
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 77 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPT-IEDTYRQVISCDKSVCTLQITDTTGSHQFP--------AMQRLSI 77 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCC-CCEEEEEEEEETTEEEEEEEEECCGGGSCH--------HHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCc-cccceeEEEEECCEEEEEEEEeCCChHHhH--------HHHHHhh
Confidence 4679999999999999999999987654222222 1122222233333 368999999975321 1233345
Q ss_pred hhcccEEEEEEeCCCCCCC-CHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGH-SIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~-~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|++++... .....+..+..+.....+.|+++|
T Consensus 78 ~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv 120 (199)
T 2gf0_A 78 SKG-HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV 120 (199)
T ss_dssp HHC-SEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEE
T ss_pred ccC-CEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 555 999999999874322 122233444444433346888887
No 110
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.33 E-value=4.4e-12 Score=109.68 Aligned_cols=113 Identities=18% Similarity=0.123 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCce--EEEEeCCCCCCCCcchHHHHHHHH
Q psy15712 233 SIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLR--WQVIDTPGILDHSLEDRNIIEMQA 310 (358)
Q Consensus 233 ~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~--~~liDTPG~~~~~~~~~~~ie~~~ 310 (358)
.......+|+++|.+|||||||+|+|++..... .+..++..........++.. +.+|||||...... ..
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~ 83 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVD-DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA--------MR 83 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS--------SH
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH--------HH
Confidence 334457799999999999999999999765443 33334444445556666654 56699999753221 12
Q ss_pred HHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 311 VTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 311 ~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
..++... |++++|+|++++.. .+....++..+.. ...+.|+++|
T Consensus 84 ~~~~~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~ilv 129 (183)
T 3kkq_A 84 EQYMRTG-DGFLIVYSVTDKAS--FEHVDRFHQLILRVKDRESFPMILV 129 (183)
T ss_dssp HHHHHHC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHHTSSCCCEEEE
T ss_pred HHHHhcC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 2345555 99999999998532 2222334443322 1246888886
No 111
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.33 E-value=6.7e-12 Score=109.51 Aligned_cols=110 Identities=18% Similarity=0.170 Sum_probs=71.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........+..+.+.....+...+ ..+++|||||....... ...++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 92 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI--------TTAYY 92 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS--------GGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh--------HHHhc
Confidence 357899999999999999999998775433334333344444444443 47899999997543211 12234
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
... |++++|+|+++.. +.+....++..+... ..+.|+++|
T Consensus 93 ~~~-d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv 133 (189)
T 2gf9_A 93 RGA-MGFLLMYDIANQE--SFAAVQDWATQIKTYSWDNAQVILV 133 (189)
T ss_dssp TTC-SEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred cCC-CEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 444 9999999998743 223333455555432 246898887
No 112
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=1.5e-12 Score=114.05 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=71.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe--cCceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY--KYLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........+..+.+.....+.. .+..+++|||||.. ........++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~ 93 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE--------RYRTITTAYY 93 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH--------HCHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH--------HHHHHHHHHH
Confidence 4578999999999999999999987654333333333333334433 34578999999952 2223344455
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
... |++++|+|+++... .+....++..+.... .+.|+++|
T Consensus 94 ~~~-d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv 134 (191)
T 3dz8_A 94 RGA-MGFILMYDITNEES--FNAVQDWATQIKTYSWDNAQVILV 134 (191)
T ss_dssp TTC-CEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred ccC-CEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCCEEEE
Confidence 665 99999999987432 233334555554322 47898887
No 113
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.32 E-value=1.6e-12 Score=113.92 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=71.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++.... ..+..|+.........+++. .+++|||||...... ....++
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 92 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP-TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR--------LRPLSY 92 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT--------TGGGGC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC-CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH--------HhHhhc
Confidence 4578999999999999999999987753 33334444444445555555 459999999643211 112234
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHH-HHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQ-IGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q-~~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|+++... .... ..++..+.....+.|+++|
T Consensus 93 ~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv 133 (194)
T 3reg_A 93 ADS-DVVLLCFAVNNRTS--FDNISTKWEPEIKHYIDTAKTVLV 133 (194)
T ss_dssp TTC-SEEEEEEETTCHHH--HHHHHHTHHHHHHHHCTTSEEEEE
T ss_pred cCC-cEEEEEEECCCHHH--HHHHHHHHHHHHHHhCCCCCEEEE
Confidence 444 99999999988432 2221 3455555555567899887
No 114
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.32 E-value=3.6e-12 Score=108.16 Aligned_cols=106 Identities=15% Similarity=0.033 Sum_probs=58.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
..+|+++|.+|||||||+|+|++.... ..+.+++|... ...+++ ..+++|||||..... .....++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~ 70 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQDGGR--------WLPGHCM 70 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE---EEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCEEEEEEEEECCCCccch--------hhhhhhh
Confidence 468999999999999999999987653 44555555532 223333 367899999975321 1122334
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
... |++++|+|++++. +.+....++..+... ..++|+++|
T Consensus 71 ~~~-~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ilv 112 (166)
T 3q72_A 71 AMG-DAYVIVYSVTDKG--SFEKASELRVQLRRARQTDDVPIILV 112 (166)
T ss_dssp --C-CEEEEEEETTCHH--HHHHHHHHHHHHHHCC---CCCEEEE
T ss_pred hhC-CEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 444 9999999999753 333344455555432 247898887
No 115
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.32 E-value=7.2e-12 Score=128.55 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=73.8
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCC---cccCCCcceeeeEEEEE--------------------------------
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADV---DVQPYAFTTKSLYVGHT-------------------------------- 280 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~---~v~~~~~tT~~~~~~~~-------------------------------- 280 (358)
...+.|+++|.+|||||||+|+|++.++ .+++.|+||+.....+.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 3568999999999999999999999886 37778877653222110
Q ss_pred ----EecC---ceEEEEeCCCCCCCCcchHHH---HHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCC
Q psy15712 281 ----DYKY---LRWQVIDTPGILDHSLEDRNI---IEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFN 350 (358)
Q Consensus 281 ----~~~~---~~~~liDTPG~~~~~~~~~~~---ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~ 350 (358)
.+.+ ..+.+|||||+.+......+. +...+..++... |++++|+|+++... ......++..+...
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~a-D~il~VvDa~~~~~--~~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERV-DLIILLFDAHKLEI--SDEFSEAIGALRGH-- 217 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHC-SEEEEEEETTSCCC--CHHHHHHHHHTTTC--
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhC-CEEEEEEeCCcCCC--CHHHHHHHHHHHhc--
Confidence 0011 368999999998632111110 223344455555 99999999987321 12334566666543
Q ss_pred CCeEEEe
Q psy15712 351 NKVGPLE 357 (358)
Q Consensus 351 ~kPvilv 357 (358)
+.|+++|
T Consensus 218 ~~pvilV 224 (550)
T 2qpt_A 218 EDKIRVV 224 (550)
T ss_dssp GGGEEEE
T ss_pred CCCEEEE
Confidence 5787776
No 116
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.32 E-value=1.4e-11 Score=119.57 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEE----------------------------------
Q psy15712 233 SIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVG---------------------------------- 278 (358)
Q Consensus 233 ~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~---------------------------------- 278 (358)
.+....+.|+++|.+|||||||+|+|+|..+.......+|+.+..-
T Consensus 29 ~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 108 (360)
T 3t34_A 29 TLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQ 108 (360)
T ss_dssp ---CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHH
T ss_pred cccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHH
Confidence 3345677999999999999999999999775322222222221111
Q ss_pred ---------------------EEEecCceEEEEeCCCCCCCC-----cchHHHHHHHHHHHHhhcccEEEEEEeCCCCCC
Q psy15712 279 ---------------------HTDYKYLRWQVIDTPGILDHS-----LEDRNIIEMQAVTALAHLRAAVLYFIDISEQCG 332 (358)
Q Consensus 279 ---------------------~~~~~~~~~~liDTPG~~~~~-----~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~ 332 (358)
........+++|||||+.+.. ......+...+..++.+. |++++|+|++....
T Consensus 109 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~-d~iilvv~~~~~~~ 187 (360)
T 3t34_A 109 DETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKP-NCIILAISPANQDL 187 (360)
T ss_dssp HHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSS-SEEEEEEEETTSCG
T ss_pred HHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcC-CeEEEEeecccCCc
Confidence 011123468999999998752 233344455566666665 99999998765332
Q ss_pred CCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 333 HSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 333 ~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
. ....+.++..+.+. ++|+|+|
T Consensus 188 ~-~~~~~~l~~~~~~~--~~~~i~V 209 (360)
T 3t34_A 188 A-TSDAIKISREVDPS--GDRTFGV 209 (360)
T ss_dssp G-GCHHHHHHHHSCTT--CTTEEEE
T ss_pred C-CHHHHHHHHHhccc--CCCEEEE
Confidence 2 23446677777554 6788876
No 117
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.32 E-value=5.7e-12 Score=109.83 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=73.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
+..+|+++|.+|||||||+|+|++.... ...| |.+.....+.+++..+++|||||........ ..++..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--------~~~~~~ 89 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYW--------RCYFSD 89 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETTEEEEEEEECCSSSSCCCC--------SSSSTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECCEEEEEEECCCCHhHHHHH--------HHHhhc
Confidence 4679999999999999999999876643 2222 3345556677778899999999986432111 112334
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
. |++++|+|++++. +......++..+... ..++|+++|
T Consensus 90 ~-d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv 129 (189)
T 2x77_A 90 T-DAVIYVVDSTDRD--RMGVAKHELYALLDEDELRKSLLLIF 129 (189)
T ss_dssp C-CEEEEEEETTCCT--THHHHHHHHHHHHTCSTTTTCEEEEE
T ss_pred C-CEEEEEEeCCCHH--HHHHHHHHHHHHHhhhhcCCCeEEEE
Confidence 4 9999999999854 344444555554332 357898887
No 118
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.32 E-value=4.7e-12 Score=113.96 Aligned_cols=110 Identities=18% Similarity=0.177 Sum_probs=70.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++..+.....++.+.+.....+.+++ ..+++|||||....... ...++
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 83 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI--------TSAYY 83 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC--------CGGGT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh--------HHHHh
Confidence 356899999999999999999998876555556666666666666766 47899999997543211 11233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
... |++++|+|++++. +......++..+... ..+.|+++|
T Consensus 84 ~~~-d~vilV~D~~~~~--s~~~~~~~l~~i~~~~~~~~piilv 124 (223)
T 3cpj_B 84 RGA-VGALIVYDISKSS--SYENCNHWLSELRENADDNVAVGLI 124 (223)
T ss_dssp TTC-CEEEEEEC-CCHH--HHHHHHHHHHHHHHHCC--CEEEEE
T ss_pred ccC-CEEEEEEeCCCHH--HHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 444 9999999998843 233334455555432 236888886
No 119
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=9.9e-12 Score=109.20 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=69.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++...... +..|+.......+.+++ ..+.+|||||... .. .....+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~~----~~~~~~ 96 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE-YDPTLESTYRHQATIDDEVVSMEILDTAGQED-----TI----QREGHM 96 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-----CH----HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCCCCceEEEEEEECCEEEEEEEEECCCCCc-----cc----chhhhh
Confidence 457899999999999999999998775432 23333333333444554 4689999999865 11 123345
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
... |++++|+|++++.. .+....++..+... ..+.|+++|
T Consensus 97 ~~~-d~iilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv 138 (196)
T 2atv_A 97 RWG-EGFVLVYDITDRGS--FEEVLPLKNILDEIKKPKNVTLILV 138 (196)
T ss_dssp HHC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHHTTSCCCEEEE
T ss_pred ccC-CEEEEEEECcCHHH--HHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 555 99999999988442 22223334443321 247888887
No 120
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.31 E-value=6.1e-12 Score=109.59 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=67.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++.... ..+..++.......+.+++. .+.+|||||.... ......++.
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 91 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--------SAMRDQYMR 91 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------CT
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc-cccCCccceEEEEEEEECCEEEEEEEEECCChHHH--------HHHHHHhhC
Confidence 468999999999999999999987643 34445555555556666654 4889999997432 111223344
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
. +|++++|+|+++.. +......++..+... ..+.|+++|
T Consensus 92 ~-~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ilv 132 (190)
T 3con_A 92 T-GEGFLCVFAINNSK--SFADINLYREQIKRVKDSDDVPMVLV 132 (190)
T ss_dssp T-CSEEEEEEETTCHH--HHHHHHHHHHHHHHHHTCSCCCEEEE
T ss_pred c-CCEEEEEEECcCHH--HHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 4 49999999998743 223333344444332 136888876
No 121
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.31 E-value=7.5e-12 Score=105.28 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=69.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++..... .++.++.......+..++. .+.+|||||..... . ....++.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~----~~~~~~~ 73 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD-ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----A----MRDQYMR 73 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----H----HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCccceEEEEEEEECCEEEEEEEEECCCchhhh----H----HHHHhhc
Confidence 3579999999999999999999876432 3334444444445555554 56899999975422 1 1223444
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
.. |++++|+|+++.. +......++..+.... .+.|+++|
T Consensus 74 ~~-~~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~p~iiv 114 (166)
T 2ce2_X 74 TG-EGFLCVFAINNTK--SFEDIHQYREQIKRVKDSDDVPMVLV 114 (166)
T ss_dssp HC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHHTCSCCCEEEE
T ss_pred cC-CEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 54 9999999998743 2233334444443322 26888876
No 122
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.31 E-value=7.7e-13 Score=116.80 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=77.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........+++|.+.....+.+++ ..+.+|||||....... ...++
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 103 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--------TSSYY 103 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC--------SCC--
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH--------HHHHh
Confidence 457999999999999999999999877666667777777777777777 46899999997543211 11234
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEeC
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLEY 358 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilvf 358 (358)
... |++++|+|+++.. +.+....++..+.... .+.|+++|.
T Consensus 104 ~~~-d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~ 145 (199)
T 3l0i_B 104 RGA-HGIIVVYDVTDQE--SFNNVKQWLQEIDRYASENVNKLLVG 145 (199)
T ss_dssp CCC-SEEEECC-CCCSH--HHHHHHHHHHHHHSCC-CCSEEEEC-
T ss_pred hcC-CEEEEEEECCCHH--HHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 444 9999999999843 3344445666665432 368888863
No 123
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.31 E-value=1.9e-12 Score=114.62 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHH
Q psy15712 233 SIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQA 310 (358)
Q Consensus 233 ~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~ 310 (358)
.+.....+|+++|.+|||||||+|+|++........|+++.... ..+.+++. .+++|||||...... ..
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~ 90 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDR--------LR 90 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTT--------TG
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHH--------HH
Confidence 34455678999999999999999999987754333343333332 33455554 789999999743211 11
Q ss_pred HHHHhhcccEEEEEEeCCCCCCCCHHHH-HHHHHHHcccCCCCeEEEe
Q psy15712 311 VTALAHLRAAVLYFIDISEQCGHSIQEQ-IGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 311 ~~~l~~~~d~iL~VvD~s~~~~~~~~~q-~~ll~~i~~~f~~kPvilv 357 (358)
..++... |++++|+|+++..+ .... ..++..+.....+.|+++|
T Consensus 91 ~~~~~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piilv 135 (201)
T 2gco_A 91 PLSYPDT-DVILMCFSIDSPDS--LENIPEKWTPEVKHFCPNVPIILV 135 (201)
T ss_dssp GGGCTTC-SEEEEEEETTCHHH--HHHHHHTHHHHHHHHSTTCCEEEE
T ss_pred HHhcCCC-CEEEEEEECCCHHH--HHHHHHHHHHHHHHhCCCCCEEEE
Confidence 1233344 99999999987432 2222 2345555444457898887
No 124
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.31 E-value=5.9e-12 Score=111.90 Aligned_cols=109 Identities=16% Similarity=0.066 Sum_probs=73.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++..+. ..+..|+.+.....+.+++. .+++|||||...... ....++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 78 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR--------LRPLSY 78 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC----------CGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH--------HHHhhc
Confidence 4578999999999999999999987653 34444554444555555554 789999999854321 111234
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|++++. +..... .|+..+.....+.|+++|
T Consensus 79 ~~~-d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv 119 (212)
T 2j0v_A 79 RGA-DIFVLAFSLISKA--SYENVLKKWMPELRRFAPNVPIVLV 119 (212)
T ss_dssp TTC-SEEEEEEETTCHH--HHHHHHHTHHHHHHHHCTTCCEEEE
T ss_pred cCC-CEEEEEEECCCHH--HHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 444 9999999998743 233332 456666554457898887
No 125
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.30 E-value=1.2e-11 Score=110.11 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=56.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec---CceEEEEeCCCCCCCCcchHHHHHH-HHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK---YLRWQVIDTPGILDHSLEDRNIIEM-QAVT 312 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTPG~~~~~~~~~~~ie~-~~~~ 312 (358)
..++|+++|.+|||||||+|+|++... ...+++++.+.. .+.++ +..+++|||||... ... ....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~ 74 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHES--------LRFQLLDR 74 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHH--------HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcceeeE--EEEecCCCccEEEEEECCCChh--------HHHHHHHH
Confidence 457899999999999999999998764 334454444433 35555 46799999999842 221 2223
Q ss_pred HHhhcccEEEEEEeCCC
Q psy15712 313 ALAHLRAAVLYFIDISE 329 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s~ 329 (358)
++... |++++|+|+++
T Consensus 75 ~~~~~-~~~i~v~d~~~ 90 (214)
T 2fh5_B 75 FKSSA-RAVVFVVDSAA 90 (214)
T ss_dssp HGGGE-EEEEEEEETTT
T ss_pred HHhhC-CEEEEEEECCC
Confidence 34444 99999999976
No 126
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=7e-12 Score=109.70 Aligned_cols=109 Identities=15% Similarity=0.082 Sum_probs=73.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++.... ..+..|+.+.....+.+++ ..+++|||||..+.... ...++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 87 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL--------RPLSY 87 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT--------GGGGC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH--------HHHhc
Confidence 4568999999999999999999987543 3444555554455566665 46789999998643211 11233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|++++.. ..... .++..+.....+.|+++|
T Consensus 88 ~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piilv 128 (194)
T 2atx_A 88 PMT-DVFLICFSVVNPAS--FQNVKEEWVPELKEYAPNVPFLLI 128 (194)
T ss_dssp TTC-SEEEEEEETTCHHH--HHHHHHTHHHHHHHHSTTCCEEEE
T ss_pred CCC-CEEEEEEECCCHHH--HHHHHHHHHHHHHHhCCCCCEEEE
Confidence 444 99999999987432 22222 455666554557898887
No 127
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.29 E-value=1.7e-11 Score=107.87 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=69.5
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcc--cCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDV--QPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v--~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
....+|+++|.+|||||||+|.+++..... ....+++..............+++|||||.......... ...+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-----~~~~ 92 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD-----YEMI 92 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC-----HHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh-----cccc
Confidence 356799999999999999999999854321 112222222221111123458999999997542111100 0234
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
++.. |++++|+|+++....+......++..+.....+.|+++|
T Consensus 93 ~~~~-~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv 135 (196)
T 3llu_A 93 FRGT-GALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135 (196)
T ss_dssp HHTC-SEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cccC-CEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 5555 999999999985222333444566665434457899887
No 128
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.29 E-value=3e-12 Score=125.12 Aligned_cols=89 Identities=25% Similarity=0.376 Sum_probs=68.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec---------------------CceEEEEeCCCCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK---------------------YLRWQVIDTPGILD 297 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~---------------------~~~~~liDTPG~~~ 297 (358)
.+|++||.||||||||+|+|++..+.++++||+|..++.+...+. +..+++|||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 468999999999999999999887778899999999888876543 34699999999986
Q ss_pred CCcchHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 298 HSLEDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 298 ~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
....... +...+...++.. |++++|+|+++
T Consensus 82 ~a~~~~~-lg~~fl~~ir~a-d~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEG-LGNQFLAHIREV-AAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSC-TTHHHHHHHHTC-SEEEEEEECCC
T ss_pred cccccch-HHHHHHHHHHhC-CEEEEEEECCC
Confidence 5322111 112344456666 99999999987
No 129
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.28 E-value=5.7e-12 Score=113.02 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=70.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++..... .+..|+.......+..++ ..+++|||||...... ....++
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~ 96 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN--------VRPLCY 96 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT--------TGGGGC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH--------HHHHHc
Confidence 46789999999999999999999877543 333333333333334443 4688999999743211 112234
Q ss_pred hhcccEEEEEEeCCCCCCCCHHH-HHHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQE-QIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~-q~~ll~~i~~~f~~kPvilv 357 (358)
+.. |++++|+|+++.. +... ...|+..+.....+.|+++|
T Consensus 97 ~~~-d~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv 137 (214)
T 3q3j_B 97 SDS-DAVLLCFDISRPE--TVDSALKKWRTEILDYCPSTRVLLI 137 (214)
T ss_dssp TTC-SEEEEEEETTCTH--HHHHHHTHHHHHHHHHCTTSEEEEE
T ss_pred CCC-eEEEEEEECcCHH--HHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 444 9999999999843 3333 23456666555567899887
No 130
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.28 E-value=2.1e-11 Score=106.67 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=69.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++.... ..+..|+..........++ ..+++|||||...... + ..++
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----~----~~~~ 89 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN-----C----ERYL 89 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC-----T----HHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh-----H----HHHH
Confidence 4578999999999999999999987643 3444455444444444554 3678999999854321 1 1244
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc----CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL----FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~----f~~kPvilv 357 (358)
... |++++|+|+++.. +......++..+... ..+.|+++|
T Consensus 90 ~~~-~~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~~piilv 133 (187)
T 3c5c_A 90 NWA-HAFLVVYSVDSRQ--SFDSSSSYLELLALHAKETQRSIPALLL 133 (187)
T ss_dssp TTC-SEEEEEEETTCHH--HHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_pred hhC-CEEEEEEECCCHH--HHHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 454 9999999998743 333334455555432 247898886
No 131
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.28 E-value=1.1e-11 Score=108.34 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=71.3
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
....+|+++|.+|||||||+|++++........+ |.+.....+.+++. .+++|||||..... +
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------~ 82 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-------------F 82 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETTEEEEEEEEECSSSCCHH-------------H
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECCEEEEEEEEECCCChhhh-------------e
Confidence 4567999999999999999999998775433323 23334456666664 56789999984311 3
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC--CCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF--NNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f--~~kPvilv 357 (358)
+... |++++|+|+++.. +.+....++..+.... .+.|+++|
T Consensus 83 ~~~~-~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv 125 (184)
T 3ihw_A 83 AAWV-DAVVFVFSLEDEI--SFQTVYNYFLRLCSFRNASEVPMVLV 125 (184)
T ss_dssp HHHC-SEEEEEEETTCHH--HHHHHHHHHHHHHTTSCGGGSCEEEE
T ss_pred ecCC-CEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4444 9999999999843 3334345666665432 46788886
No 132
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.28 E-value=1.5e-12 Score=116.72 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=74.4
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCC-C-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRAD-V-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~-~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
....+|+++|.+|||||||+|+++... . ...+.+++|...........+..+++|||||....... ...+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 84 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL--------RDGY 84 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC--------CHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH--------HHHH
Confidence 345789999999999999999965433 2 24555666666655554444567899999997433211 1234
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+... |++++|+|+++... ......++..+.....+.|+++|
T Consensus 85 ~~~~-~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~p~ilv 125 (221)
T 3gj0_A 85 YIQA-QCAIIMFDVTSRVT--YKNVPNWHRDLVRVCENIPIVLC 125 (221)
T ss_dssp HTTC-CEEEEEEETTCHHH--HHTHHHHHHHHHHHSTTCCEEEE
T ss_pred HhcC-CEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCEEEE
Confidence 4555 99999999998432 33334566666555557899887
No 133
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.27 E-value=5.4e-12 Score=109.80 Aligned_cols=109 Identities=18% Similarity=0.154 Sum_probs=68.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++..... .+..|+.......+.+++ ..+++|||||...... ....++
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 76 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN--------VRPLSY 76 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT--------TGGGGC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh--------hHHhhc
Confidence 45789999999999999999999876532 222233222333444444 3679999999743211 011233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHH-HHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQ-IGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q-~~ll~~i~~~f~~kPvilv 357 (358)
.. +|++++|+|++++.. .... -.++..+.....+.|+++|
T Consensus 77 ~~-~~~~i~v~d~~~~~s--~~~~~~~~~~~i~~~~~~~piilv 117 (184)
T 1m7b_A 77 PD-SDAVLICFDISRPET--LDSVLKKWKGEIQEFCPNTKMLLV 117 (184)
T ss_dssp TT-CSEEEEEEETTCHHH--HHHHHHTHHHHHHHHCTTCEEEEE
T ss_pred CC-CcEEEEEEECCCHHH--HHHHHHHHHHHHHHHCCCCCEEEE
Confidence 34 499999999987432 2222 2345555444457898887
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.27 E-value=3e-12 Score=127.27 Aligned_cols=114 Identities=24% Similarity=0.258 Sum_probs=74.6
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCc-eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYL-RWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~-~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
...++|+++|.+|+|||||+|+|++... .+++.+++|.+.....+.+.+. .+.+|||||+.+.........+ .+..+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~-~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVE-KARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHH-HHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHH-HHHHH
Confidence 3567999999999999999999999886 4778899999999888888776 8999999999875322111111 23445
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEeC
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilvf 358 (358)
+... |++++|+|++. . .....++..+... ++|+++|.
T Consensus 111 l~~a-D~vllVvD~~~--~---~~~~~~l~~l~~~--~~piIvV~ 147 (423)
T 3qq5_A 111 FYRA-DCGILVTDSAP--T---PYEDDVVNLFKEM--EIPFVVVV 147 (423)
T ss_dssp HTSC-SEEEEECSSSC--C---HHHHHHHHHHHHT--TCCEEEEC
T ss_pred HhcC-CEEEEEEeCCC--h---HHHHHHHHHHHhc--CCCEEEEE
Confidence 5665 99999999822 1 2334566666554 78988874
No 135
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.27 E-value=1.5e-11 Score=108.57 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=69.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec--CceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK--YLRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++..... .++.|+.........+. ...+++|||||....... ...++
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 93 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSE-GYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL--------PYSFI 93 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-CCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC--------CGGGT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH--------HHHHH
Confidence 46789999999999999999999877653 33334433334444433 356799999997543221 11233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
... |++++|+|+++.. +......++..+... ..++|+++|
T Consensus 94 ~~~-d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv 135 (201)
T 3oes_A 94 IGV-HGYVLVYSVTSLH--SFQVIESLYQKLHEGHGKTRVPVVLV 135 (201)
T ss_dssp TTC-CEEEEEEETTCHH--HHHHHHHHHHHHHC-----CCCEEEE
T ss_pred hcC-CEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 444 9999999998743 333444566665443 236788887
No 136
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.27 E-value=2.7e-12 Score=114.13 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=67.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........| |+.......+..++ ..+++|||||....... ...++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 94 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGQEDYDRL--------RPLSY 94 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT--------GGGGC
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCC-cccceEEEEEEECCEEEEEEEEECCCcHHHHHH--------HHhhc
Confidence 346899999999999999999998775432223 33333333455555 36889999998543211 11233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHH-HHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQ-IGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q-~~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|+++... .... ..++..+.....++|+++|
T Consensus 95 ~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piilv 135 (207)
T 2fv8_A 95 PDT-DVILMCFSVDSPDS--LENIPEKWVPEVKHFCPNVPIILV 135 (207)
T ss_dssp TTC-CEEEEEEETTCHHH--HHHHHHTHHHHHHHHSTTCCEEEE
T ss_pred CCC-CEEEEEEECCCHHH--HHHHHHHHHHHHHHhCCCCCEEEE
Confidence 344 99999999987432 2222 2355555444457898887
No 137
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.27 E-value=4.7e-12 Score=124.64 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=72.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecC-----------------ceEEEEeCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKY-----------------LRWQVIDTPGILDH 298 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~-----------------~~~~liDTPG~~~~ 298 (358)
...+++++|.||||||||+|+|++... .++++||||.++..|.+.+.+ ..++++||||+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 456899999999999999999999887 799999999999999988876 35799999999865
Q ss_pred CcchHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 299 ~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
.... +.+...+...++.. |++++|+|+++
T Consensus 99 ~s~~-e~L~~~fl~~ir~~-d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTG-VGLGNAFLSHVRAV-DAIYQVVRAFD 127 (392)
T ss_dssp CCSS-SSSCHHHHHHHTTC-SEEEEEEECCC
T ss_pred CcHH-HHHHHHHHHHHHHH-HHHHHHHhccc
Confidence 3221 11211244556665 99999999986
No 138
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.27 E-value=1.3e-11 Score=106.95 Aligned_cols=87 Identities=23% Similarity=0.220 Sum_probs=60.4
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcch---HHHHHHHHHHHHh
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLED---RNIIEMQAVTALA 315 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~---~~~ie~~~~~~l~ 315 (358)
++|+++|.+|||||||+|+|++..+..+..|++|........ . .+.+|||||+....... .+.+......++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 479999999999999999999988877778888877655433 2 78999999976543211 2223333334444
Q ss_pred h-c--ccEEEEEEeCCC
Q psy15712 316 H-L--RAAVLYFIDISE 329 (358)
Q Consensus 316 ~-~--~d~iL~VvD~s~ 329 (358)
. . .+++++|+|.+.
T Consensus 78 ~~~~~~~~v~~v~d~~s 94 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKA 94 (190)
T ss_dssp HHGGGCCEEEEEEETTH
T ss_pred hhhccCCEEEEEEcchh
Confidence 3 2 357777777643
No 139
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.27 E-value=4.8e-12 Score=110.16 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=67.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCC--------CcceeeeEEEEE---Eec--CceEEEEeCCCCCCCCcchH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPY--------AFTTKSLYVGHT---DYK--YLRWQVIDTPGILDHSLEDR 303 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~--------~~tT~~~~~~~~---~~~--~~~~~liDTPG~~~~~~~~~ 303 (358)
...+|+++|.+|||||||+|.|.+........ ...|........ ..+ ...+++|||||.....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 45789999999999999999998765432110 112322222111 112 2368999999975422
Q ss_pred HHHHHHHHHHHhhcccEEEEEEeCCCCCCC----CHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 304 NIIEMQAVTALAHLRAAVLYFIDISEQCGH----SIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 304 ~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~----~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.....+++.. |++++|+|++++... +......++.++.....+.|+++|
T Consensus 89 ----~~~~~~~~~~-d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv 141 (198)
T 3t1o_A 89 ----ASRKLILRGV-DGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQ 141 (198)
T ss_dssp ----HHHHHHTTTC-CEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEE
T ss_pred ----HHHHHHHhcC-CEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEE
Confidence 1223345555 999999999853211 222233455555444468899987
No 140
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1.1e-11 Score=108.17 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=64.3
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcc---cCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDV---QPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVT 312 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v---~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~ 312 (358)
...++|+++|.+|||||||+|+|++..... ...+++|.+ +.+..+.+|||||.......... ....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~~~~~~----~~~~ 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLRYKLSD----YLKT 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------CCCTTCSEEEETTCCBSSCCHHH----HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------ecCCeEEEEECCCCchHHHHHHH----HHHh
Confidence 356799999999999999999999876432 222333322 25678899999999654322211 1111
Q ss_pred HHhhcccEEEEEEeCC-CCCCCCHHHHHHHHHHHcc-----cCCCCeEEEeC
Q psy15712 313 ALAHLRAAVLYFIDIS-EQCGHSIQEQIGLFKSIRP-----LFNNKVGPLEY 358 (358)
Q Consensus 313 ~l~~~~d~iL~VvD~s-~~~~~~~~~q~~ll~~i~~-----~f~~kPvilvf 358 (358)
.+. .+|++++|+|++ +. .+......++..+.. .-.+.|+++|.
T Consensus 115 ~~~-~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 163 (193)
T 2ged_A 115 RAK-FVKGLIFMVDSTVDP--KKLTTTAEFLVDILSITESSCENGIDILIAC 163 (193)
T ss_dssp HGG-GEEEEEEEEETTCCH--HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred hcc-cCCEEEEEEECCCCc--hhHHHHHHHHHHHHhhhhhccccCCCEEEEE
Confidence 222 249999999998 32 222333344444322 11368888873
No 141
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.26 E-value=1.1e-12 Score=113.09 Aligned_cols=109 Identities=12% Similarity=0.038 Sum_probs=62.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|++++.... ..+..|+.+.....+..++ ..+++|||||...... ....++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 77 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR--------LRPLSY 77 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------CEEECCCC-CTTTT--------TGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh--------hHHhhc
Confidence 4578999999999999999999977643 2333333322222222333 3567999999754321 111233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|++++.. .+... .++..+.....+.|+++|
T Consensus 78 ~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piilv 118 (182)
T 3bwd_D 78 RGA-DVFILAFSLISKAS--YENVSKKWIPELKHYAPGVPIVLV 118 (182)
T ss_dssp TTC-SEEEEEEETTCHHH--HHHHHHTHHHHHHHHCTTCCEEEE
T ss_pred cCC-CEEEEEEECCCHHH--HHHHHHHHHHHHHHhCCCCCEEEE
Confidence 444 99999999987432 22222 355555544457898887
No 142
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.26 E-value=8.3e-12 Score=126.05 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=77.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.||||||||+|+|++... +.. +.|.+.....+.+.+..+++|||||...... .+..++..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~~--~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 389 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS-VTT--IPTVGFNVETVTYKNVKFNVWDVGGQDKIRP--------LWRHYYTG 389 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC-CCC--CCCSSEEEEEEESSSCEEEEEEECCCGGGSG--------GGGGGGTT
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC-CCc--CCccceeEEEEEeCCEEEEEEECCCcHHHHH--------HHHHHhcc
Confidence 457899999999999999999998773 222 3478888888888889999999999643221 12234445
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEeC
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLEY 358 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilvf 358 (358)
. |++|+|+|+++.. +......++..+.. ...++|+|+|.
T Consensus 390 a-d~~i~V~D~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ilv~ 430 (497)
T 3lvq_E 390 T-QGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFA 430 (497)
T ss_dssp C-CEEEEEEETTCGG--GHHHHHHHHHHHHTSGGGTTCEEEEEE
T ss_pred C-CEEEEEEECcchh--HHHHHHHHHHHHhhhhhcCCCcEEEEE
Confidence 4 9999999999843 34444455555533 23578998873
No 143
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.26 E-value=1.1e-11 Score=108.17 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=62.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCC-CcccCC-CcceeeeEEEEEEe-----cCceEEEEeCCCCCCCCcchHHHHHHHHH
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRAD-VDVQPY-AFTTKSLYVGHTDY-----KYLRWQVIDTPGILDHSLEDRNIIEMQAV 311 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~-~~tT~~~~~~~~~~-----~~~~~~liDTPG~~~~~~~~~~~ie~~~~ 311 (358)
.+|+++|.+|||||||+|+|++.. .....+ ++.+.+.....+.+ ....+++|||||... ......
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~ 74 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE--------FYSTHP 74 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHH--------HHTTSH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHH--------HHHhhH
Confidence 579999999999999999999863 222222 22223333332222 245789999999732 111122
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.++... +++++|+|++++. .+......++..+.....+.|+++|
T Consensus 75 ~~~~~~-~~~i~v~d~~~~~-~s~~~~~~~~~~~~~~~~~~piilv 118 (184)
T 2zej_A 75 HFMTQR-ALYLAVYDLSKGQ-AEVDAMKPWLFNIKARASSSPVILV 118 (184)
T ss_dssp HHHHHS-EEEEEEEEGGGCH-HHHHTHHHHHHHHHHHCTTCEEEEE
T ss_pred HHccCC-cEEEEEEeCCcch-hHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 344444 8899999998741 1222334566665543347898886
No 144
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.25 E-value=7.9e-12 Score=111.57 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=69.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|+|++........+ |+.......+.+++ ..+++|||||...... ....++
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~ 97 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVP-TVFENYTASFEIDTQRIELSLWDTSGSPYYDN--------VRPLSY 97 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCC-CSEEEEEEEEESSSSEEEEEEEEECCSGGGTT--------TGGGGC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC-ccceeEEEEEEECCEEEEEEEEeCCCcHhhhH--------HHHhhc
Confidence 457899999999999999999998765432223 33222333444444 4689999999743211 011233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHH-HHHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQ-IGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q-~~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|+++.. +.... ..|+..+.....+.|+++|
T Consensus 98 ~~~-d~~ilv~D~~~~~--s~~~~~~~~~~~i~~~~~~~piilv 138 (205)
T 1gwn_A 98 PDS-DAVLICFDISRPE--TLDSVLKKWKGEIQEFCPNTKMLLV 138 (205)
T ss_dssp TTC-SEEEEEEETTCHH--HHHHHHHTHHHHHHHHCTTCEEEEE
T ss_pred cCC-CEEEEEEECCCHH--HHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 344 9999999998743 22332 2455555544457898887
No 145
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.25 E-value=1e-11 Score=110.79 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=66.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec-C--ceEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK-Y--LRWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
...+|+++|.+|||||||+|+|++........+..+........... + ..+.+|||||....... ....
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~ 81 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL--------KDVY 81 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC--------CHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH--------HHHH
Confidence 45789999999999999999999876542222222222222222222 2 46899999997543211 1123
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccC-CCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLF-NNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f-~~kPvilv 357 (358)
+... |++++|+|+++... .+....++..+.... .++|+++|
T Consensus 82 ~~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piilv 123 (218)
T 4djt_A 82 YIGA-SGAILFFDVTSRIT--CQNLARWVKEFQAVVGNEAPIVVC 123 (218)
T ss_dssp HTTC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHHCSSSCEEEE
T ss_pred hhcC-CEEEEEEeCCCHHH--HHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4444 99999999998432 222334444443322 25788886
No 146
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.24 E-value=9.3e-11 Score=123.84 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=78.5
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEE-------------------------------------
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVG------------------------------------- 278 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~------------------------------------- 278 (358)
...|.|+++|.+|+|||||+|+|+|..+.......+|+.+..-
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3578999999999999999999999876322222344322211
Q ss_pred --------------EEEe-cCceEEEEeCCCCCCCC-----cchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHH
Q psy15712 279 --------------HTDY-KYLRWQVIDTPGILDHS-----LEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQ 338 (358)
Q Consensus 279 --------------~~~~-~~~~~~liDTPG~~~~~-----~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q 338 (358)
.+.. +...+.++||||+...+ .+....+......++...+|++|+|+|++...... +.
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~--d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS--DA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSC--HH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchh--HH
Confidence 1111 12368899999998743 11223455555566665669999999999855433 23
Q ss_pred HHHHHHHcccCCCCeEEEeC
Q psy15712 339 IGLFKSIRPLFNNKVGPLEY 358 (358)
Q Consensus 339 ~~ll~~i~~~f~~kPvilvf 358 (358)
+.++..+.+. ++|+|+|+
T Consensus 207 l~ll~~L~~~--g~pvIlVl 224 (772)
T 3zvr_A 207 LKIAKEVDPQ--GQRTIGVI 224 (772)
T ss_dssp HHHHHHHCTT--CSSEEEEE
T ss_pred HHHHHHHHhc--CCCEEEEE
Confidence 4677777664 78998874
No 147
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.24 E-value=2.3e-11 Score=117.00 Aligned_cols=107 Identities=15% Similarity=0.206 Sum_probs=72.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH 316 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~ 316 (358)
...+|+++|.+|||||||+|+|++..+. ...| |.+.....+.+.+..+++|||||..... .....++..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~-~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ 232 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR--------PLWRHYFQN 232 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE-EEEE--ETTEEEEEEEETTEEEEEEECC-----C--------CSHHHHHTT
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC-Cccc--ccceEEEEEecCcEEEEEEECCCCHhHH--------HHHHHHhcc
Confidence 3458999999999999999999987753 2333 6667777778888899999999964321 113344555
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHHHcc--cCCCCeEEEe
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~--~f~~kPvilv 357 (358)
. |++|+|+|+++..+ ......++..+.. ...++|+++|
T Consensus 233 a-d~vilV~D~~~~~s--~~~~~~~~~~~~~~~~~~~~piilV 272 (329)
T 3o47_A 233 T-QGLIFVVDSNDRER--VNEAREELMRMLAEDELRDAVLLVF 272 (329)
T ss_dssp E-EEEEEEEETTCSSS--HHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred C-CEEEEEEECCchHH--HHHHHHHHHHHHhhhccCCCeEEEE
Confidence 5 99999999998544 3443444444332 2347899887
No 148
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.23 E-value=1.6e-11 Score=111.14 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=68.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||++++++..+.....|+...+........++. .++||||+|..... .....+++
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~--------~l~~~~~~ 84 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR--------SLIPSYIR 84 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCG--------GGHHHHHT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh--------hHHHHHhc
Confidence 468999999999999999999977764433444444555555555554 67899999985431 12334555
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
.. +++++|+|+++... .+....|+..+... -.+.|++||
T Consensus 85 ~a-~~~ilv~di~~~~S--f~~i~~~~~~i~~~~~~~~piilV 124 (216)
T 4dkx_A 85 DS-AAAVVVYDITNVNS--FQQTTKWIDDVRTERGSDVIIMLV 124 (216)
T ss_dssp TC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHHTTSSEEEEE
T ss_pred cc-cEEEEEeecchhHH--HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 55 99999999998443 33344455555432 246788876
No 149
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.22 E-value=2.1e-11 Score=108.74 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=66.5
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcc---cCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDV---QPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVT 312 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v---~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~ 312 (358)
...++|+++|.+|||||||+|+|++..... ...++++.+ +.+..+++|||||+.... .. ...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~----~~----~~~ 74 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLR----YK----LSD 74 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-------GGGSSCEEEECCCCGGGT----HH----HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-------eeCceEEEEECCCcHHHH----HH----HHH
Confidence 356799999999999999999999876432 222322222 255689999999995322 11 222
Q ss_pred HHhh---cccEEEEEEeCC-CCCCCCHHHHHHHHHHHcc-----cCCCCeEEEeC
Q psy15712 313 ALAH---LRAAVLYFIDIS-EQCGHSIQEQIGLFKSIRP-----LFNNKVGPLEY 358 (358)
Q Consensus 313 ~l~~---~~d~iL~VvD~s-~~~~~~~~~q~~ll~~i~~-----~f~~kPvilvf 358 (358)
++.. .+|++++|+|++ +...+ .....++.++.. .-.+.|+++|.
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 127 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKL--TTTAEFLVDILSITESSCENGIDILIAC 127 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCC--HHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred HHHhccccCCEEEEEEECCCChHHH--HHHHHHHHHHHhcccccccCCCCEEEEE
Confidence 3333 248999999998 43333 333344444322 11468888873
No 150
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.22 E-value=1e-11 Score=117.62 Aligned_cols=109 Identities=16% Similarity=0.085 Sum_probs=73.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceE--EEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRW--QVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~--~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
...+|+++|.+|||||||+|++++... ...+..|+.+.....+..++..+ ++|||||...... ....++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~ 224 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR--------LRPLSY 224 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT--------TGGGGC
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH--------HHHHhc
Confidence 357899999999999999999997665 33455666666666666666654 5999999853321 111233
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|++++.. ..... .++..+.....++|+++|
T Consensus 225 ~~~-d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv 265 (332)
T 2wkq_A 225 PQT-DVFLICFSLVSPAS--FHHVRAKWYPEVRHHCPNTPIILV 265 (332)
T ss_dssp TTC-SEEEEEEETTCHHH--HHHHHHTHHHHHHHHCTTSCEEEE
T ss_pred cCC-CEEEEEEeCCCHHH--HHHHHHHHHHHHHhhCCCCcEEEE
Confidence 444 99999999987432 22222 345555544457899887
No 151
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.85 E-value=1.1e-12 Score=115.98 Aligned_cols=109 Identities=16% Similarity=0.097 Sum_probs=70.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTAL 314 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l 314 (358)
+..+|+++|.+|||||||+|+|++.... ..+..|+.+.....+..++. .+++|||||.... ......++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~ 99 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY--------DRLRPLSY 99 (204)
Confidence 4578999999999999999999976643 23334444444444444443 5669999997432 11222344
Q ss_pred hhcccEEEEEEeCCCCCCCCHHHHH-HHHHHHcccCCCCeEEEe
Q psy15712 315 AHLRAAVLYFIDISEQCGHSIQEQI-GLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 315 ~~~~d~iL~VvD~s~~~~~~~~~q~-~ll~~i~~~f~~kPvilv 357 (358)
... |++++|+|++++..+. ... .++..+.....++|+++|
T Consensus 100 ~~~-d~iilv~D~~~~~s~~--~~~~~~~~~l~~~~~~~piilv 140 (204)
T 3th5_A 100 PQT-DVFLICFSLVSPASFE--NVRAKWYPEVRHHCPNTPIILV 140 (204)
Confidence 444 9999999998865432 222 455555444446788876
No 152
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.21 E-value=9.9e-12 Score=123.29 Aligned_cols=88 Identities=32% Similarity=0.597 Sum_probs=67.8
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecC-ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhc
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY-LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHL 317 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~ 317 (358)
..|+++|+||||||||+|+|++..+.+++++++|..+..+.+.+.+ ..+.++||||+......... +.......+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~-L~~~fl~~~er- 235 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKG-LGLEFLRHIAR- 235 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCC-SCHHHHHHHTS-
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhh-hhHHHHHHHHH-
Confidence 4689999999999999999999988889999999999999888876 78999999999754221110 00111222333
Q ss_pred ccEEEEEEeCC
Q psy15712 318 RAAVLYFIDIS 328 (358)
Q Consensus 318 ~d~iL~VvD~s 328 (358)
.+.+|+|+|++
T Consensus 236 a~~lL~vvDls 246 (416)
T 1udx_A 236 TRVLLYVLDAA 246 (416)
T ss_dssp SSEEEEEEETT
T ss_pred HHhhhEEeCCc
Confidence 38999999998
No 153
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.19 E-value=8.5e-11 Score=105.96 Aligned_cols=111 Identities=13% Similarity=0.030 Sum_probs=69.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
...+|+++|.+|||||||+|++++.... +..++.++.+.....+.+++. .+++|||+|... . +......
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~------~--~~~l~~~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG------E--NEWLHDH 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH------H--HHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc------h--hhhHHHH
Confidence 3468999999999999999999976542 344555666655566667665 457899999732 0 1111111
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
....++++++|+|+++... .+....++..+... ..++|+|+|
T Consensus 108 ~~~~a~~~ilVydvt~~~s--f~~~~~~~~~l~~~~~~~~~piilV 151 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRAS--FEKASELRIQLRRARQTEDIPIILV 151 (211)
T ss_dssp CCCCCSEEEEEEETTCHHH--HHHHHHHHHHHHTSGGGTTSCEEEE
T ss_pred HHhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 1223589999999987433 23323344444332 247898887
No 154
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.17 E-value=4.4e-11 Score=105.51 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=71.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++........|+.+.+...+.+.+++. .+++|||||...... .....+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~--------~~~~~~~ 76 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR--------ITSAYYR 76 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC--------CCHHHHT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh--------hhHHHHh
Confidence 468999999999999999999998765445565556677777778775 567899999753221 1122334
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
.. +++++|+|++.... ......++..+... -.+.|++++
T Consensus 77 ~~-~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~i~~v 116 (199)
T 2f9l_A 77 GA-VGALLVYDIAKHLT--YENVERWLKELRDHADSNIVIMLV 116 (199)
T ss_dssp TC-SEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred cC-CEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 44 89999999987432 22223344444322 135787765
No 155
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.17 E-value=1.5e-10 Score=102.47 Aligned_cols=93 Identities=18% Similarity=0.136 Sum_probs=53.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC--cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCC--CcchHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV--DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH--SLEDRNIIEMQAVT 312 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~--~~~~~~~ie~~~~~ 312 (358)
....|+++|.+|||||||+|+|++... .+.+.+++|... +.+.+.+ .+.+|||||+... +......+......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 456899999999999999999998762 345666666643 3344444 7889999998643 12222222222222
Q ss_pred HHh--hcccEEEEEEeCCCCCC
Q psy15712 313 ALA--HLRAAVLYFIDISEQCG 332 (358)
Q Consensus 313 ~l~--~~~d~iL~VvD~s~~~~ 332 (358)
++. ...+++++|+|++....
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~ 123 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLK 123 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCC
T ss_pred HHHhhhcccEEEEEEECCCCCc
Confidence 332 23488999999988544
No 156
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.17 E-value=5e-11 Score=105.04 Aligned_cols=111 Identities=13% Similarity=0.019 Sum_probs=67.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCc--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYL--RWQVIDTPGILDHSLEDRNIIEMQAVTA 313 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ie~~~~~~ 313 (358)
...+|+++|.+|||||||+|++++... .+..+++++.+.....+.+++. .+++|||+|....... + ...+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~----~---~~~~ 77 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW----L---HDHC 77 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CT----T---GGGH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhh----H---HHhh
Confidence 356899999999999999999997443 2444555666665566667765 4578999997431000 0 1122
Q ss_pred HhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc--CCCCeEEEe
Q psy15712 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL--FNNKVGPLE 357 (358)
Q Consensus 314 l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~--f~~kPvilv 357 (358)
++. +|++++|+|+++..++ +....++..+... ..+.|+++|
T Consensus 78 ~~~-~~~~i~v~dv~~~~s~--~~~~~~~~~l~~~~~~~~~piilV 120 (192)
T 2cjw_A 78 MQV-GDAYLIVYSITDRASF--EKASELRIQLRRARQTEDIPIILV 120 (192)
T ss_dssp HHH-CSEEEEEEETTCHHHH--HHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred ccc-CCEEEEEEECCCHHHH--HHHHHHHHHHHHhhCCCCCeEEEE
Confidence 333 4999999999885433 2222333333221 236888886
No 157
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.17 E-value=2.1e-10 Score=114.49 Aligned_cols=86 Identities=12% Similarity=0.083 Sum_probs=64.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-------------------------------ccCCCcceeeeEEEEEEecCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-------------------------------VQPYAFTTKSLYVGHTDYKYL 285 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-------------------------------v~~~~~tT~~~~~~~~~~~~~ 285 (358)
...+|+++|.+|+|||||+|+|++.... ....+++|.+.....+.+.+.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 4578999999999999999999643211 112257788888888888888
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC
Q psy15712 286 RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 286 ~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~ 331 (358)
.+.+|||||..+ +...+...+... |++|+|+|+++..
T Consensus 96 ~~~iiDTPGh~~--------f~~~~~~~~~~a-D~~ilVVDa~~g~ 132 (439)
T 3j2k_7 96 HFTILDAPGHKS--------FVPNMIGGASQA-DLAVLVISARKGE 132 (439)
T ss_pred EEEEEECCChHH--------HHHHHHhhHhhC-CEEEEEEECCCCc
Confidence 999999999732 223344455555 9999999999853
No 158
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.16 E-value=2.9e-11 Score=124.58 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=67.0
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe-------cCceEEEEeCCCCCCCCc-chHHHH
Q psy15712 235 DPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY-------KYLRWQVIDTPGILDHSL-EDRNII 306 (358)
Q Consensus 235 ~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~-------~~~~~~liDTPG~~~~~~-~~~~~i 306 (358)
+.+..+|+++|.||||||||+|+|+|....+ +++++|.+.+.+.+.| .+..+.++||||+.+... +.....
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH
Confidence 3456789999999999999999999987543 5666666666555443 456899999999987643 333333
Q ss_pred HHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHH
Q psy15712 307 EMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLF 342 (358)
Q Consensus 307 e~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll 342 (358)
+..++..+. .+ ++|+|+++.........+.++
T Consensus 114 ~~fala~ll--ss--~lv~n~~~~i~~~dl~~l~~v 145 (592)
T 1f5n_A 114 WIFALAVLL--SS--TFVYNSIGTINQQAMDQLYYV 145 (592)
T ss_dssp HHHHHHHHH--CS--EEEEEEESCSSHHHHHTTHHH
T ss_pred HHHHHHHHh--cC--eEEEECCCCccHHHHHHHHHH
Confidence 433333322 13 466787765544333333433
No 159
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.15 E-value=7e-11 Score=124.41 Aligned_cols=110 Identities=17% Similarity=0.227 Sum_probs=69.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcc--------------eeeeE-------------------------
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFT--------------TKSLY------------------------- 276 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~t--------------T~~~~------------------------- 276 (358)
..++|+++|.+|+|||||+|+|+|..+. ++..|+| |....
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4679999999999999999999998854 5556655 22110
Q ss_pred --------------EEEEEecC----ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHH
Q psy15712 277 --------------VGHTDYKY----LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQ 338 (358)
Q Consensus 277 --------------~~~~~~~~----~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q 338 (358)
...+.+.. ..+.+|||||+.+... ....+..++... |++|||+|++++... . .
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-----~~~~~~~~i~~a-D~vL~Vvda~~~~s~--~-e 218 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-----RNELSLGYVNNC-HAILFVMRASQPCTL--G-E 218 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-----CHHHHTHHHHSS-SEEEEEEETTSTTCH--H-H
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-----HHHHHHHHHHhC-CEEEEEEeCCCccch--h-H
Confidence 00001111 4689999999965321 122344566665 999999999886543 2 2
Q ss_pred HHHH-HHHcccCCCCeEEEe
Q psy15712 339 IGLF-KSIRPLFNNKVGPLE 357 (358)
Q Consensus 339 ~~ll-~~i~~~f~~kPvilv 357 (358)
...+ ..+... ++|+++|
T Consensus 219 ~~~l~~~l~~~--~~~iiiV 236 (695)
T 2j69_A 219 RRYLENYIKGR--GLTVFFL 236 (695)
T ss_dssp HHHHHHHTTTS--CCCEEEE
T ss_pred HHHHHHHHHhh--CCCEEEE
Confidence 3333 334333 6787776
No 160
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.15 E-value=6.5e-11 Score=111.56 Aligned_cols=64 Identities=31% Similarity=0.431 Sum_probs=42.1
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCC-CcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcch
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLED 302 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~ 302 (358)
....+++++|+||||||||+|+|++.. ..+++.|++|++.+... . +..+.++||||+.......
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~~~~~~ 182 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--V-GKELELLDTPGILWPKFED 182 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE--E-TTTEEEEECCCCCCSCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE--e-CCCEEEEECcCcCCCCCCC
Confidence 356789999999999999999999988 56899999999876332 2 4589999999998775443
No 161
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.12 E-value=5.3e-11 Score=123.56 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=64.4
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccC-------------------------------CCcceeeeEEEEEEecC
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQP-------------------------------YAFTTKSLYVGHTDYKY 284 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~-------------------------------~~~tT~~~~~~~~~~~~ 284 (358)
....+|+++|.+|+|||||+|+|++....+.. .+++|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 35679999999999999999999976432221 25778888888888888
Q ss_pred ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 285 LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 285 ~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
.++.+|||||+.+ +...+...+.. +|++|+|+|+++
T Consensus 245 ~~~~iiDTPG~e~--------f~~~~~~~~~~-aD~~llVVDa~~ 280 (611)
T 3izq_1 245 ANFTIVDAPGHRD--------FVPNAIMGISQ-ADMAILCVDCST 280 (611)
T ss_dssp CEEEEEECCSSSC--------HHHHHTTTSSC-CSEEEEEEECSH
T ss_pred ceEEEEECCCCcc--------cHHHHHHHHhh-cCceEEEEECCC
Confidence 9999999999843 11222333344 499999999987
No 162
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.12 E-value=1.1e-10 Score=117.80 Aligned_cols=85 Identities=16% Similarity=0.268 Sum_probs=62.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-------------------------------cccCCCcceeeeEEEEEEecCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-------------------------------DVQPYAFTTKSLYVGHTDYKYL 285 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-------------------------------~v~~~~~tT~~~~~~~~~~~~~ 285 (358)
...+|+++|.+|+|||||+|+|++... .....+++|.+.....+...+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 457899999999999999999975411 1223357788888888888888
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCC
Q psy15712 286 RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 286 ~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~ 330 (358)
.+.+|||||..+ +...+...+... |++|+|+|+++.
T Consensus 112 ~~~iiDTPG~~~--------f~~~~~~~~~~a-D~~llVvDa~~g 147 (483)
T 3p26_A 112 NFTIVDAPGHRD--------FVPNAIMGISQA-DMAILCVDCSTN 147 (483)
T ss_dssp EEEEECCCCCGG--------GHHHHHHHHTTC-SEEEEEEECCC-
T ss_pred eEEEEECCCcHH--------HHHHHHHhhhhC-CEEEEEEECCCC
Confidence 999999999943 222344555555 999999999885
No 163
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.11 E-value=4.6e-11 Score=121.94 Aligned_cols=106 Identities=21% Similarity=0.208 Sum_probs=74.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC----------------cc------cCCCcceeeeEEEEEEecCceEEEEeCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV----------------DV------QPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~----------------~v------~~~~~tT~~~~~~~~~~~~~~~~liDTPG~ 295 (358)
.++|+++|.+|+|||||+|+|+.... .+ ...+++|.......+.+.+..+.||||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 46899999999999999999962110 01 112466777777788889999999999998
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 296 LDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 296 ~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+... .+..+++.. |++|+|+|+++.... +...++..+... ++|++++
T Consensus 93 ~df~~--------~~~~~l~~a-D~allVvDa~~g~~~---~t~~~~~~~~~~--~iPiivv 140 (528)
T 3tr5_A 93 ADFTE--------DTYRTLTAV-DSALMVIDAAKGVEP---RTIKLMEVCRLR--HTPIMTF 140 (528)
T ss_dssp TTCCH--------HHHHGGGGC-SEEEEEEETTTCSCH---HHHHHHHHHHTT--TCCEEEE
T ss_pred hhHHH--------HHHHHHHhC-CEEEEEEeCCCCCCH---HHHHHHHHHHHc--CCCEEEE
Confidence 66431 134455555 999999999985432 223444444443 6888876
No 164
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.11 E-value=1.2e-10 Score=117.60 Aligned_cols=107 Identities=16% Similarity=0.120 Sum_probs=66.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC-------CcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHH
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD-------VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQ 309 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~-------~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~ 309 (358)
...+|+++|.+|+|||||+|+|++.. ......+++|.+.....+.+++..+.+|||||.. .+...
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~--------~~~~~ 89 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA--------DLIRA 89 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH--------HHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH--------HHHHH
Confidence 35789999999999999999999876 2234556778777777777888899999999972 12222
Q ss_pred HHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 310 AVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 310 ~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
....+... |++++|+|+++.......+.+.++... +.|.+++
T Consensus 90 ~~~~~~~a-D~~ilVvda~~g~~~qt~e~l~~~~~~-----~ip~Ivv 131 (482)
T 1wb1_A 90 VVSAADII-DLALIVVDAKEGPKTQTGEHMLILDHF-----NIPIIVV 131 (482)
T ss_dssp HHHHTTSC-CEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCBCEE
T ss_pred HHHHHhhC-CEEEEEEecCCCccHHHHHHHHHHHHc-----CCCEEEE
Confidence 33444444 999999999885433233334333332 4566544
No 165
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.09 E-value=8.5e-11 Score=119.99 Aligned_cols=108 Identities=10% Similarity=0.024 Sum_probs=64.5
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEE------EEEe----cCceEEEEeCCCCCCCCcchHHH
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVG------HTDY----KYLRWQVIDTPGILDHSLEDRNI 305 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~------~~~~----~~~~~~liDTPG~~~~~~~~~~~ 305 (358)
....+|+++|.+|||||||+|+|++..+.....|+...+.... .+.. .+..+.+|||||......-
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~---- 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS---- 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT----
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH----
Confidence 3567999999999999999999999875422222222222211 1111 2468999999996432211
Q ss_pred HHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 306 IEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 306 ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
....+++. |++++|+|+++. +....++..+.....++|+|+|
T Consensus 115 ----~~~~l~~~-d~ii~V~D~s~~-----~~~~~~~~~l~~~~~~~pvilV 156 (535)
T 3dpu_A 115 ----HQFFMTRS-SVYMLLLDSRTD-----SNKHYWLRHIEKYGGKSPVIVV 156 (535)
T ss_dssp ----CHHHHHSS-EEEEEEECGGGG-----GGHHHHHHHHHHHSSSCCEEEE
T ss_pred ----HHHHccCC-cEEEEEEeCCCc-----hhHHHHHHHHHHhCCCCCEEEE
Confidence 12345554 999999999863 2334566666554456899887
No 166
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.07 E-value=1e-09 Score=96.36 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=72.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCce--EEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLR--WQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~--~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
..+|+++|.+|||||||+|+|++........|+.+.+...+.+.+++.. +++|||||......- ....+.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--------~~~~~~ 100 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI--------TSAYYR 100 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCC--------CHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhh--------hHHHhh
Confidence 4689999999999999999999987655556666777777888888765 467999998543211 112233
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHccc-CCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPL-FNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~-f~~kPvilv 357 (358)
.. +++++|+|++.... .+....++..+... ..+.|++++
T Consensus 101 ~~-~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~i~~v 140 (191)
T 1oix_A 101 GA-VGALLVYDIAKHLT--YENVERWLKELRDHADSNIVIMLV 140 (191)
T ss_dssp TC-CEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred cC-CEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCcEEEE
Confidence 33 88999999887432 12222344444321 235777765
No 167
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.05 E-value=3.2e-10 Score=111.80 Aligned_cols=86 Identities=14% Similarity=0.126 Sum_probs=61.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC--------CCc---c------cCCCcceeeeEEEEEEecCceEEEEeCCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA--------DVD---V------QPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~--------~~~---v------~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~ 299 (358)
...+|+++|.+|+|||||+|+|++. ... . ....+.|.+.....+...+..+.+|||||..+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f- 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY- 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH-
Confidence 4578999999999999999999873 110 0 012355666666666667789999999998542
Q ss_pred cchHHHHHHHHHHHHhhcccEEEEEEeCCCCC
Q psy15712 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 300 ~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~ 331 (358)
...+...+... |++++|+|+++..
T Consensus 89 -------~~~~~~~~~~a-D~~ilVvda~~g~ 112 (405)
T 2c78_A 89 -------IKNMITGAAQM-DGAILVVSAADGP 112 (405)
T ss_dssp -------HHHHHHHHTTC-SSEEEEEETTTCC
T ss_pred -------HHHHHHHHHHC-CEEEEEEECCCCC
Confidence 12233445555 9999999998854
No 168
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.05 E-value=2e-11 Score=124.62 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=75.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEe-cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY-KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
+.++|+++|.+|+|||||+|+|++..+.....+++|.+.....+.+ ++..+++|||||..+..... ...+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~--------~~~~~ 74 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR--------ARGTQ 74 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB--------BSSSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH--------HHHHc
Confidence 4678999999999999999999987766667788888877666666 46689999999975432111 11222
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
. +|++++|+|+++.... +..+.+..+... +.|++++
T Consensus 75 ~-aD~vILVVDa~dg~~~---qt~e~l~~~~~~--~vPiIVV 110 (537)
T 3izy_P 75 V-TDIVILVVAADDGVMK---QTVESIQHAKDA--HVPIVLA 110 (537)
T ss_dssp S-BSSCEEECBSSSCCCH---HHHHHHHHHHTT--TCCEEEC
T ss_pred c-CCEEEEEEECCCCccH---HHHHHHHHHHHc--CCcEEEE
Confidence 3 4999999999985433 223444444433 6788775
No 169
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=2.1e-10 Score=112.10 Aligned_cols=86 Identities=21% Similarity=0.364 Sum_probs=61.1
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC------CCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA------DVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVT 312 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~------~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~ 312 (358)
.+++++|.||||||||+|+|++. ...++++|+||++.....+. ..+.++||||+.+..... ..+......
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~-~~l~~~~l~ 238 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE---SGATLYDTPGIINHHQMA-HFVDARDLK 238 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS---TTCEEEECCSCCCCSSGG-GGSCTTTHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHHH-HHHhHHHHH
Confidence 47999999999999999999986 46688999999988765432 358999999998654211 111111222
Q ss_pred HH---hhcccEEEEEEeCCC
Q psy15712 313 AL---AHLRAAVLYFIDISE 329 (358)
Q Consensus 313 ~l---~~~~d~iL~VvD~s~ 329 (358)
.+ .. .++++|++|+..
T Consensus 239 ~~~~~~~-i~~~~~~l~~~~ 257 (369)
T 3ec1_A 239 IITPKRE-IHPRVYQLNEGQ 257 (369)
T ss_dssp HHSCSSC-CCCEEEEECTTE
T ss_pred HHhcccc-cCceEEEEcCCc
Confidence 23 33 388999999843
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.00 E-value=1e-10 Score=118.54 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=74.3
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA 315 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~ 315 (358)
++.++|+++|.+|+|||||+++|++..+..+..+++|.+....++.+++..+.+|||||..+..... ...+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~--------~~~~- 72 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR--------ARGA- 72 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB--------CSSS-
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH--------HHHH-
Confidence 3568999999999999999999997665545556677766655666778899999999986542111 1112
Q ss_pred hcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 316 HLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 316 ~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
..+|++++|+|+++.......+.+..+.. . +.|++++
T Consensus 73 ~~aD~aILVVda~~g~~~qT~e~l~~~~~---~--~vPiIVv 109 (501)
T 1zo1_I 73 QATDIVVLVVAADDGVMPQTIEAIQHAKA---A--QVPVVVA 109 (501)
T ss_dssp BSCSSEEEEEETTTBSCTTTHHHHHHHHH---T--TCCEEEE
T ss_pred hhCCEEEEEeecccCccHHHHHHHHHHHh---c--CceEEEE
Confidence 23489999999988654444444443332 2 6787665
No 171
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.00 E-value=1.3e-09 Score=108.53 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=66.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-----------ccCCC----------------------cceeeeEEEEEEec
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-----------VQPYA----------------------FTTKSLYVGHTDYK 283 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-----------v~~~~----------------------~tT~~~~~~~~~~~ 283 (358)
...+|+++|.+|+|||||+|+|++.... .+..+ +.|.+.....+...
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 3478999999999999999999854311 11122 33455555566667
Q ss_pred CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 284 YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 284 ~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
+..+.+|||||..+. .......+... |++++|+|+++.......+.+.++..+ ..+|+|+|
T Consensus 103 ~~~~~iiDtpGh~~f--------~~~~~~~~~~a-D~~ilVvDa~~g~~~qt~~~l~~~~~~----~~~~iIvv 163 (434)
T 1zun_B 103 KRKFIIADTPGHEQY--------TRNMATGASTC-DLAIILVDARYGVQTQTRRHSYIASLL----GIKHIVVA 163 (434)
T ss_dssp SEEEEEEECCCSGGG--------HHHHHHHHTTC-SEEEEEEETTTCSCHHHHHHHHHHHHT----TCCEEEEE
T ss_pred CceEEEEECCChHHH--------HHHHHHHHhhC-CEEEEEEECCCCCcHHHHHHHHHHHHc----CCCeEEEE
Confidence 789999999997432 11223344444 999999999985433222333333322 23466665
No 172
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.00 E-value=1e-09 Score=108.05 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=58.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc----------------ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcc
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD----------------VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE 301 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~----------------v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 301 (358)
..+|+++|.+|+|||||+|+|++.... .....+.|.+.....+...+..+.+|||||..+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~---- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD---- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH----
Confidence 468999999999999999999863100 011235566665555566678999999999842
Q ss_pred hHHHHHHHHHHHHhhcccEEEEEEeCCCCC
Q psy15712 302 DRNIIEMQAVTALAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 302 ~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~ 331 (358)
+.......+.. +|++++|+|+++..
T Consensus 79 ----f~~~~~~~~~~-aD~~ilVvda~~g~ 103 (397)
T 1d2e_A 79 ----YVKNMITGTAP-LDGCILVVAANDGP 103 (397)
T ss_dssp ----HHHHHHHTSSC-CSEEEEEEETTTCS
T ss_pred ----HHHHHHhhHhh-CCEEEEEEECCCCC
Confidence 12222333333 49999999999854
No 173
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.00 E-value=5.6e-10 Score=117.51 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=69.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC---CCC---------cccC------CCcceeeeEEEEEEecCceEEEEeCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR---ADV---------DVQP------YAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~---~~~---------~v~~------~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~ 298 (358)
+.++|+++|.+|+|||||+|+|++ .-. .+.+ .+++|.......+.+++..+.+|||||+.+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 457899999999999999999984 210 0111 2456666667778888899999999999764
Q ss_pred CcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 299 ~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.. .+..+++.. |++|+|+|+++....... .++..+... +.|++++
T Consensus 89 ~~--------~~~~~l~~a-D~~llVvDa~~g~~~~~~---~~~~~~~~~--~~p~ilv 133 (693)
T 2xex_A 89 TV--------EVERSLRVL-DGAVTVLDAQSGVEPQTE---TVWRQATTY--GVPRIVF 133 (693)
T ss_dssp CH--------HHHHHHHHC-SEEEEEEETTTBSCHHHH---HHHHHHHHT--TCCEEEE
T ss_pred HH--------HHHHHHHHC-CEEEEEECCCCCCcHHHH---HHHHHHHHc--CCCEEEE
Confidence 31 133455555 999999999985433222 333333332 6787775
No 174
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.99 E-value=3.4e-10 Score=110.50 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=55.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC-------CCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHH
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA-------DVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAV 311 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~-------~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~ 311 (358)
.+++++|.||||||||+|+|++. ...++++|+||++.....+. ..+.++||||+.+...-. ..+.....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~-~~l~~~~l 236 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD---EESSLYDTPGIINHHQMA-HYVGKQSL 236 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS---SSCEEEECCCBCCTTSGG-GGSCHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec---CCeEEEeCCCcCcHHHHH-HHhhHHHH
Confidence 47999999999999999999975 23478999999988765432 248999999998764111 11111111
Q ss_pred HHH--hhcccEEEEEEeCC
Q psy15712 312 TAL--AHLRAAVLYFIDIS 328 (358)
Q Consensus 312 ~~l--~~~~d~iL~VvD~s 328 (358)
..+ ....+.++|++|+.
T Consensus 237 ~~~~~~~~i~~~~~~l~~~ 255 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEE 255 (368)
T ss_dssp HHHSCSSCCCCEEEEECTT
T ss_pred HHhccccccCceEEEEcCC
Confidence 121 12237889999874
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.96 E-value=1.4e-09 Score=110.94 Aligned_cols=106 Identities=20% Similarity=0.156 Sum_probs=67.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc----------------cc------CCCcceeeeEEEEEEecCceEEEEeCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD----------------VQ------PYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~----------------v~------~~~~tT~~~~~~~~~~~~~~~~liDTPG~ 295 (358)
..+|+++|.+|+|||||+|+|++.... +. ...+.|.......+.+.+..+.+|||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 468999999999999999999853211 11 12234444455567788889999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 296 LDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 296 ~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+... .+..++... |++++|+|+++... . ....++..+... +.|++++
T Consensus 93 ~df~~--------~~~~~l~~a-D~~IlVvDa~~g~~--~-~t~~~~~~~~~~--~ipiivv 140 (529)
T 2h5e_A 93 EDFSE--------DTYRTLTAV-DCCLMVIDAAKGVE--D-RTRKLMEVTRLR--DTPILTF 140 (529)
T ss_dssp TTCCH--------HHHHGGGGC-SEEEEEEETTTCSC--H-HHHHHHHHHTTT--TCCEEEE
T ss_pred hhHHH--------HHHHHHHHC-CEEEEEEeCCccch--H-HHHHHHHHHHHc--CCCEEEE
Confidence 65431 123445555 99999999988542 1 223334444332 6787665
No 176
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.96 E-value=1.1e-09 Score=106.92 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=56.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhccc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRA 319 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d 319 (358)
+|+++|.+|+|||||+|+|+ ..+.|.+.....+.+.+..+.+|||||..+.. ......+... |
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~--------~~~~~~~~~a-D 85 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL--------KSLITALNIS-D 85 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH--------HHHHHHHHTC-S
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH--------HHHHHHHHHC-C
Confidence 89999999999999999998 34566677777777788899999999986431 1123344444 9
Q ss_pred EEEEEEeCCCC
Q psy15712 320 AVLYFIDISEQ 330 (358)
Q Consensus 320 ~iL~VvD~s~~ 330 (358)
++++|+| +..
T Consensus 86 ~ailVvd-~~g 95 (370)
T 2elf_A 86 IAVLCIP-PQG 95 (370)
T ss_dssp EEEEEEC-TTC
T ss_pred EEEEEEc-CCC
Confidence 9999999 653
No 177
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.96 E-value=1.5e-09 Score=106.90 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=63.2
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeE-------------------EEEEEecCceEEEEeCCCC
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLY-------------------VGHTDYKYLRWQVIDTPGI 295 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~-------------------~~~~~~~~~~~~liDTPG~ 295 (358)
....+|+++|.+|+|||||+|+|++.... ...+..+|.... ..........+.+|||||.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 35679999999999999999999985432 112222221100 0000011157899999996
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCC-CHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 296 LDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGH-SIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 296 ~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~-~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+ +.......+... |++++|+|+++.... ...+.+.++..+ ..+|++++
T Consensus 86 ~~--------~~~~~~~~~~~~-D~~ilVvda~~~~~~~qt~~~~~~~~~~----~~~~iivv 135 (403)
T 3sjy_A 86 EV--------LMATMLSGAALM-DGAILVVAANEPFPQPQTREHFVALGII----GVKNLIIV 135 (403)
T ss_dssp GG--------GHHHHHHHHTTC-SEEEEEEETTSCSSCHHHHHHHHHHHHH----TCCCEEEE
T ss_pred HH--------HHHHHHHHHhhC-CEEEEEEECCCCCCcHHHHHHHHHHHHc----CCCCEEEE
Confidence 32 122234455554 999999999986522 222233333332 23577765
No 178
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.94 E-value=5.7e-10 Score=108.14 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=24.3
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 233 SIDPFTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 233 ~~~~~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
+.....+.|+++|+||||||||+|+|++
T Consensus 69 r~~~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 69 KGKPLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp TTCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccccCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3345678999999999999999999986
No 179
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.93 E-value=3.6e-09 Score=104.43 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=66.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc---ccCCCcceeeeEEEEEEec-----------------------CceEEEE
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD---VQPYAFTTKSLYVGHTDYK-----------------------YLRWQVI 290 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~---v~~~~~tT~~~~~~~~~~~-----------------------~~~~~li 290 (358)
...+|+++|.+|+|||||+|+|++.... ....++.|.+.......+. ...+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 4568999999999999999999975432 2223555665544333321 1578999
Q ss_pred eCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC-CCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 291 DTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC-GHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 291 DTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~-~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
||||..+ +.......+.. +|++++|+|+++.+ .....+.+.++..+ ..+|++++
T Consensus 89 DtPGh~~--------f~~~~~~~~~~-~D~~ilVvda~~g~~~~qt~e~l~~~~~~----~~~~iivv 143 (410)
T 1kk1_A 89 DAPGHEA--------LMTTMLAGASL-MDGAILVIAANEPCPRPQTREHLMALQII----GQKNIIIA 143 (410)
T ss_dssp ECSSHHH--------HHHHHHHCGGG-CSEEEEEEETTSCSSCHHHHHHHHHHHHH----TCCCEEEE
T ss_pred ECCChHH--------HHHHHHhhhhh-CCEEEEEEECCCCCCChhHHHHHHHHHHc----CCCcEEEE
Confidence 9999621 22222233333 49999999999854 22233334444433 23577664
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.92 E-value=2.5e-09 Score=112.48 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=67.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC---CCC---cc------cC------CCcceeeeEEEEEEecCceEEEEeCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR---ADV---DV------QP------YAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~---~~~---~v------~~------~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~ 298 (358)
..++|+++|.+|+|||||+|+|+. .-. .+ .+ ..+.|.......+.+.+..+.+|||||..+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 457899999999999999999983 110 11 11 2355666666677888889999999999653
Q ss_pred CcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 299 ~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
. ..+..++... |++++|+|+++....... ..+..+... +.|++++
T Consensus 91 ~--------~~~~~~l~~a-D~~ilVvDa~~g~~~~t~---~~~~~~~~~--~~p~ivv 135 (691)
T 1dar_A 91 T--------IEVERSMRVL-DGAIVVFDSSQGVEPQSE---TVWRQAEKY--KVPRIAF 135 (691)
T ss_dssp H--------HHHHHHHHHC-SEEEEEEETTTCSCHHHH---HHHHHHHHT--TCCEEEE
T ss_pred H--------HHHHHHHHHC-CEEEEEEECCCCcchhhH---HHHHHHHHc--CCCEEEE
Confidence 1 1234455555 999999999985433222 233333322 6787765
No 181
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.90 E-value=1.4e-09 Score=101.42 Aligned_cols=113 Identities=20% Similarity=0.206 Sum_probs=65.5
Q ss_pred chhhhhHHHHHHhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEE
Q psy15712 162 YKLGLGQLNQARHLIDNVAKDYLRLMKYADSLYRCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTI 241 (358)
Q Consensus 162 ~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~~~~~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I 241 (358)
-+..+..+|++++......+.|...++..+...... ......++.+...+...- .++
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v~iS-----------------a~~~~gi~~L~~~l~~~~------~~v 102 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFKKQGKRVITT-----------------HKGEPRKVLLKKLSFDRL------ARV 102 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCEEEC-----------------CTTSCHHHHHHHHCCCTT------CEE
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeEEEE-----------------CCCCcCHHHHHHHHHHhh------hhe
Confidence 345566788888866555566666554321100000 011122344444443211 589
Q ss_pred EEecCCCCCHHHHHHHHhCCCC-cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCc
Q psy15712 242 IICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 242 ~lvG~~nvGKSSLin~L~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~ 300 (358)
+++|.||||||||+|+|++... .+++.|++|+...... . +..+++|||||+.+...
T Consensus 103 ~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 103 LIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS--L-ENGVKILDTPGILYKNI 159 (262)
T ss_dssp EEEESTTSSHHHHHHHHHTTCC----------CCSCEEE--C-TTSCEEESSCEECCCCC
T ss_pred EEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE--e-CCCEEEEECCCcccCcC
Confidence 9999999999999999999875 5888899998775432 2 35789999999997654
No 182
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.89 E-value=8.1e-10 Score=110.84 Aligned_cols=84 Identities=18% Similarity=0.183 Sum_probs=59.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC--Cc-----------------------ccC------CCcceeeeEEEEEEecCce
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD--VD-----------------------VQP------YAFTTKSLYVGHTDYKYLR 286 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~--~~-----------------------v~~------~~~tT~~~~~~~~~~~~~~ 286 (358)
..+|+++|.+|+|||||+|+|++.. +. +.+ ..+.|.+.....+...+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4689999999999999999998531 10 001 1456777766677777889
Q ss_pred EEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCC
Q psy15712 287 WQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 287 ~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~ 330 (358)
+.+|||||..+ +...+...+.. +|++++|+|+++.
T Consensus 87 ~~iiDtPGh~~--------f~~~~~~~~~~-aD~~ilVvda~~g 121 (458)
T 1f60_A 87 VTVIDAPGHRD--------FIKNMITGTSQ-ADCAILIIAGGVG 121 (458)
T ss_dssp EEEEECCCCTT--------HHHHHHHSSSC-CSEEEEEEECSHH
T ss_pred EEEEECCCcHH--------HHHHHHhhhhh-CCEEEEEEeCCcC
Confidence 99999999742 12223334444 4999999999863
No 183
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.88 E-value=1.6e-09 Score=107.91 Aligned_cols=84 Identities=19% Similarity=0.246 Sum_probs=54.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC--CCc-----------------------------ccCCCcceeeeEEEEEEecCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA--DVD-----------------------------VQPYAFTTKSLYVGHTDYKYL 285 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~--~~~-----------------------------v~~~~~tT~~~~~~~~~~~~~ 285 (358)
...+|+++|.+|+|||||+|+|++. .+. .....++|.+.....+.+.+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 3568999999999999999999853 111 001346677777777778888
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 286 RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 286 ~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
.+.+|||||..+. ...+...+.. +|++++|+|+++
T Consensus 85 ~~~iiDtpG~~~f--------~~~~~~~~~~-aD~~ilVvDa~~ 119 (435)
T 1jny_A 85 FFTIIDAPGHRDF--------VKNMITGASQ-ADAAILVVSAKK 119 (435)
T ss_dssp EEEECCCSSSTTH--------HHHHHHTSSC-CSEEEEEEECST
T ss_pred EEEEEECCCcHHH--------HHHHHhhhhh-cCEEEEEEECCC
Confidence 9999999998542 1123334444 499999999998
No 184
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.88 E-value=6.5e-09 Score=99.78 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=66.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCc-ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcc
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLR 318 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~ 318 (358)
+|+++|.+|||||||++.+++.... .......|.+.....+. ....+++|||||..+..... + ....+++..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~---l--~~~~yyr~a- 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS---Y--DSERLFKSV- 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS---H--HHHHHHTTC-
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh---h--hhhhhccCC-
Confidence 4789999999999999998865322 11112234444333332 23689999999997642111 0 123455665
Q ss_pred cEEEEEEeCCCCCCCCHHH-HHHHHHHHcccCCCCeEEEe
Q psy15712 319 AAVLYFIDISEQCGHSIQE-QIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 319 d~iL~VvD~s~~~~~~~~~-q~~ll~~i~~~f~~kPvilv 357 (358)
+++++|+|+++. ...... ..+++..+....++.|++++
T Consensus 74 ~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillv 112 (331)
T 3r7w_B 74 GALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVL 112 (331)
T ss_dssp SEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 999999999986 222222 22334444433457788776
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=7.2e-09 Score=100.82 Aligned_cols=115 Identities=22% Similarity=0.219 Sum_probs=55.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcccCC-C------cceeeeEE--EEEEecCc--eEEEEeCCCCCCCCc------
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPY-A------FTTKSLYV--GHTDYKYL--RWQVIDTPGILDHSL------ 300 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~-~------~tT~~~~~--~~~~~~~~--~~~liDTPG~~~~~~------ 300 (358)
..+|+++|.+|+|||||+|+|++.......+ + ..|..... ..+...+. .+.+|||||+.+...
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 4689999999999999999998765432222 1 12332222 22233333 689999999965421
Q ss_pred chHHHHHHHHHHHHhhcc------------cEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 301 EDRNIIEMQAVTALAHLR------------AAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 301 ~~~~~ie~~~~~~l~~~~------------d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.....++.+...++.... ++++|+++.+.. +.... ...++..+. .+.|+|+|
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~-~l~~~-d~~~~~~l~---~~~piIlV 180 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPL-DVAFMKAIH---NKVNIVPV 180 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSS-SCCHH-HHHHHHHTC---S-SCEEEE
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCC-Ccchh-HHHHHHHhc---cCCCEEEE
Confidence 111223333334444321 357888876432 22222 245666664 36788887
No 186
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.86 E-value=8e-09 Score=101.92 Aligned_cols=86 Identities=19% Similarity=0.219 Sum_probs=53.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc---ccCCCcceeeeEEEEEEe---------------c--------CceEEEE
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD---VQPYAFTTKSLYVGHTDY---------------K--------YLRWQVI 290 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~---v~~~~~tT~~~~~~~~~~---------------~--------~~~~~li 290 (358)
...+|+++|.+|+|||||+|+|++.... ....++.|.+.......+ . ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4578999999999999999999975432 222345566544332221 1 1578999
Q ss_pred eCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC
Q psy15712 291 DTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC 331 (358)
Q Consensus 291 DTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~ 331 (358)
||||.. .+.......+. .+|++++|+|+++.+
T Consensus 87 DtPGh~--------~f~~~~~~~~~-~~D~~ilVvda~~g~ 118 (408)
T 1s0u_A 87 DSPGHE--------TLMATMLSGAS-LMDGAILVIAANEPC 118 (408)
T ss_dssp ECSSHH--------HHHHHHHTTCS-CCSEEEEEEETTSCS
T ss_pred ECCCHH--------HHHHHHHHhHh-hCCEEEEEEECCCCC
Confidence 999962 11111112222 249999999999854
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.85 E-value=1.4e-08 Score=106.91 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=68.4
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC------cc------cC------CCcceeeeEEEEEEecC-------ceEEEEe
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV------DV------QP------YAFTTKSLYVGHTDYKY-------LRWQVID 291 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~------~v------~~------~~~tT~~~~~~~~~~~~-------~~~~liD 291 (358)
+.++|+++|.+|+|||||+++|+.... .+ .+ ..+.|.......+.+.+ ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 457899999999999999999964211 01 11 12445555555666766 7899999
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 292 TPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 292 TPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
|||..+.. .....+++.. |++|+|+|+++........ ++...... +.|++++
T Consensus 89 TPG~~df~--------~~~~~~l~~a-D~aIlVvDa~~gv~~qt~~---~~~~~~~~--~ip~ilv 140 (704)
T 2rdo_7 89 TPGHVDFT--------IEVERSMRVL-DGAVMVYCAVGGVQPQSET---VWRQANKY--KVPRIAF 140 (704)
T ss_pred CCCccchH--------HHHHHHHHHC-CEEEEEEeCCCCCcHHHHH---HHHHHHHc--CCCEEEE
Confidence 99996531 1233455555 9999999999854322222 23333222 5677665
No 188
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.85 E-value=4.6e-10 Score=116.11 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=40.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC-------------------------------cccCCCcceeeeEEEEEEecCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV-------------------------------DVQPYAFTTKSLYVGHTDYKYL 285 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~-------------------------------~v~~~~~tT~~~~~~~~~~~~~ 285 (358)
...+|+++|.+|+|||||+|+|++... .....+++|.+.....+.+++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 456899999999999999999963210 0112457888888888888888
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCC
Q psy15712 286 RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 286 ~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~ 330 (358)
.+.||||||..+.... +...+.. +|++|+|+|+++.
T Consensus 256 ~i~iiDTPGh~~f~~~--------~~~~~~~-aD~alLVVDa~~g 291 (592)
T 3mca_A 256 IYEIGDAPGHRDFISG--------MIAGASS-ADFAVLVVDSSQN 291 (592)
T ss_dssp ---CCEEESSSEEEEE--------CCC--------CCSEEEEEEC
T ss_pred EEEEEECCChHHHHHH--------HHHHHhh-CCEEEEEEECCCC
Confidence 9999999998653211 1122333 3999999999974
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.84 E-value=7.3e-09 Score=100.40 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.9
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHh
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
...++|+++|.||||||||+|+|+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999999996
No 190
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.83 E-value=2.2e-09 Score=110.99 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=63.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEec------------------CceEEEEeCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYK------------------YLRWQVIDTPGILDH 298 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~------------------~~~~~liDTPG~~~~ 298 (358)
+.++|+++|.+|+|||||+|+|++..+......+.|.+.......+. ...+++|||||..+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46799999999999999999998754321111133333222222211 125899999998654
Q ss_pred CcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 299 ~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.... ...+.. +|++++|+|+++...... .+.+..+... +.|++++
T Consensus 84 ~~~~--------~r~~~~-aD~aILVvDa~~Gv~~qT---~e~l~~l~~~--~vPiIVV 128 (594)
T 1g7s_A 84 TTLR--------KRGGAL-ADLAILIVDINEGFKPQT---QEALNILRMY--RTPFVVA 128 (594)
T ss_dssp TTSB--------CSSSBS-CSEEEEEEETTTCCCHHH---HHHHHHHHHT--TCCEEEE
T ss_pred HHHH--------HHHHhh-CCEEEEEEECCCCccHhH---HHHHHHHHHc--CCeEEEE
Confidence 3211 012222 499999999998543222 2333333332 6788776
No 191
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.83 E-value=7.3e-09 Score=107.12 Aligned_cols=106 Identities=20% Similarity=0.170 Sum_probs=58.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcc---------------cCCCcceeeeEEEEEEec-----CceEEEEeCCCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDV---------------QPYAFTTKSLYVGHTDYK-----YLRWQVIDTPGILD 297 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v---------------~~~~~tT~~~~~~~~~~~-----~~~~~liDTPG~~~ 297 (358)
.++|+++|.+|+|||||+++|+.....+ ....+.|.......+.|. +..+.+|||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4689999999999999999997522111 011234544444455554 25788999999965
Q ss_pred CCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 298 HSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 298 ~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.. .....+++.. |++++|+|+++.........+. ... . .+.|+|++
T Consensus 84 F~--------~ev~~~l~~a-D~aILVVDa~~gv~~qt~~~~~--~~~-~--~~ipiIvV 129 (599)
T 3cb4_D 84 FS--------YEVSRSLAAC-EGALLVVDAGQGVEAQTLANCY--TAM-E--MDLEVVPV 129 (599)
T ss_dssp GH--------HHHHHHHHHC-SEEEEEEETTTCCCTHHHHHHH--HHH-H--TTCEEEEE
T ss_pred HH--------HHHHHHHHHC-CEEEEEEECCCCCCHHHHHHHH--HHH-H--CCCCEEEe
Confidence 32 1233455565 9999999999865443333222 222 1 26787765
No 192
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.83 E-value=3.3e-09 Score=106.60 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=50.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc-------------------------c------cCCCcceeeeEEEEEEecCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD-------------------------V------QPYAFTTKSLYVGHTDYKYL 285 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~-------------------------v------~~~~~tT~~~~~~~~~~~~~ 285 (358)
...+|+++|.+|+|||||+|+|+..... + ....+.|.+.....+.+++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 3568999999999999999999742100 0 01235566665556777788
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCC
Q psy15712 286 RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330 (358)
Q Consensus 286 ~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~ 330 (358)
.+.+|||||..+.. ......+.. +|++|+|+|+++.
T Consensus 122 ~~~iiDtPGh~~f~--------~~~~~~~~~-aD~~ilVvDa~~g 157 (467)
T 1r5b_A 122 RFSLLDAPGHKGYV--------TNMINGASQ-ADIGVLVISARRG 157 (467)
T ss_dssp EEEECCCCC-------------------TTS-CSEEEEEEECSTT
T ss_pred EEEEEECCCcHHHH--------HHHHhhccc-CCEEEEEEeCCcC
Confidence 99999999985421 112233333 4999999999985
No 193
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.82 E-value=7.1e-09 Score=107.16 Aligned_cols=106 Identities=23% Similarity=0.246 Sum_probs=59.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCcc---------cC------CCcceeeeEEEEEEec---C--ceEEEEeCCCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVDV---------QP------YAFTTKSLYVGHTDYK---Y--LRWQVIDTPGILD 297 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~v---------~~------~~~tT~~~~~~~~~~~---~--~~~~liDTPG~~~ 297 (358)
.++|+++|.+|+|||||+++|+.....+ .+ ..+.|.......+.|. + ..+.+|||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4689999999999999999997521100 01 1233433333344443 2 4778999999975
Q ss_pred CCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 298 HSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 298 ~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.. .....+++.. |++++|+|+++......... +.... . .+.|++++
T Consensus 86 F~--------~ev~r~l~~a-D~aILVVDa~~gv~~qt~~~--~~~a~-~--~~ipiIvv 131 (600)
T 2ywe_A 86 FS--------YEVSRALAAC-EGALLLIDASQGIEAQTVAN--FWKAV-E--QDLVIIPV 131 (600)
T ss_dssp GH--------HHHHHHHHTC-SEEEEEEETTTBCCHHHHHH--HHHHH-H--TTCEEEEE
T ss_pred HH--------HHHHHHHHhC-CEEEEEEECCCCccHHHHHH--HHHHH-H--CCCCEEEE
Confidence 32 1123445555 99999999998543322222 22222 2 26787765
No 194
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.79 E-value=3.9e-09 Score=97.45 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=25.0
Q ss_pred CCCCCCcEEEEecCC---------CCCHHHHHHHHhCC
Q psy15712 233 SIDPFTRTIIICGFP---------NVGKSSFLNKITRA 261 (358)
Q Consensus 233 ~~~~~~~~I~lvG~~---------nvGKSSLin~L~~~ 261 (358)
.......+|+++|.+ |||||||+|+|++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 334566899999999 99999999999984
No 195
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.79 E-value=1.5e-08 Score=110.69 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=61.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCC----------------cccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADV----------------DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~----------------~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~ 300 (358)
...+|+++|.+|+|||||+++|++... ......+.|.+.....+...+..+.+|||||..+
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed--- 371 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD--- 371 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH---
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH---
Confidence 457899999999999999999986310 0011234455544444555678999999999842
Q ss_pred chHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHH
Q psy15712 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKS 344 (358)
Q Consensus 301 ~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~ 344 (358)
+.......+.. +|++|+|+|+++.......+.+.++..
T Consensus 372 -----F~~~mi~gas~-AD~aILVVDAtdGv~~QTrEhL~ll~~ 409 (1289)
T 3avx_A 372 -----YVKNMITGAAQ-MDGAILVVAATDGPMPQTREHILLGRQ 409 (1289)
T ss_dssp -----HHHHHHHTSCC-CSEEEEEEETTTCSCTTHHHHHHHHHH
T ss_pred -----HHHHHHHHHhh-CCEEEEEEcCCccCcHHHHHHHHHHHH
Confidence 22223333333 499999999998654444444444443
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.76 E-value=1.3e-08 Score=109.26 Aligned_cols=106 Identities=15% Similarity=0.091 Sum_probs=65.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc-cc---------------CCCcceeeeEEEEEEec----------------Cc
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD-VQ---------------PYAFTTKSLYVGHTDYK----------------YL 285 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~-v~---------------~~~~tT~~~~~~~~~~~----------------~~ 285 (358)
.++|+++|.+|+|||||+|+|++.... .. ...+.|.......+.|. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 468999999999999999999853211 00 11233443333444443 46
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 286 RWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 286 ~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.+.||||||..+... .+..+++.+ |++|+|+|+++....... ..+...... +.|++++
T Consensus 99 ~i~liDTPG~~df~~--------~~~~~l~~a-D~ailVvDa~~g~~~qt~---~~~~~~~~~--~~p~ilv 156 (842)
T 1n0u_A 99 LINLIDSPGHVDFSS--------EVTAALRVT-DGALVVVDTIEGVCVQTE---TVLRQALGE--RIKPVVV 156 (842)
T ss_dssp EEEEECCCCCCSSCH--------HHHHHHHTC-SEEEEEEETTTBSCHHHH---HHHHHHHHT--TCEEEEE
T ss_pred eEEEEECcCchhhHH--------HHHHHHHhC-CEEEEEEeCCCCCCHHHH---HHHHHHHHc--CCCeEEE
Confidence 789999999976431 133456665 999999999985433222 222222222 5777765
No 197
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.72 E-value=5.5e-08 Score=101.87 Aligned_cols=107 Identities=18% Similarity=0.130 Sum_probs=69.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCc------c------cC------CCcceeeeEEEEEEecCceEEEEeCCCCCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRADVD------V------QP------YAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~~~------v------~~------~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~ 298 (358)
...+|+++|.+|+|||||+++|++.... + .+ ..+.|.......+.+.+..+.+|||||..+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3568999999999999999999842211 1 11 1234555566667777889999999998542
Q ss_pred CcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 299 ~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
. .....+++.. |++++|+|+++...... ..++..+... +.|++++
T Consensus 88 ~--------~~~~~~l~~a-d~~ilVvD~~~g~~~qt---~~~~~~~~~~--~ip~ilv 132 (665)
T 2dy1_A 88 V--------GEIRGALEAA-DAALVAVSAEAGVQVGT---ERAWTVAERL--GLPRMVV 132 (665)
T ss_dssp H--------HHHHHHHHHC-SEEEEEEETTTCSCHHH---HHHHHHHHHT--TCCEEEE
T ss_pred H--------HHHHHHHhhc-CcEEEEEcCCcccchhH---HHHHHHHHHc--cCCEEEE
Confidence 1 1234455555 99999999887543222 2344443332 6787765
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.67 E-value=4.2e-08 Score=94.56 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=49.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC------CCCc-ccCCCcceee--e-----------------EEEE-----------
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR------ADVD-VQPYAFTTKS--L-----------------YVGH----------- 279 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~------~~~~-v~~~~~tT~~--~-----------------~~~~----------- 279 (358)
+...|+++|+||+|||||+|.|++ .++. +...+++|.. . ....
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 567899999999999999999963 3332 2333333321 0 0000
Q ss_pred ---------EEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 280 ---------TDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 280 ---------~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
+.+.+..+.+|||||+.+.. . .+...+|++++|+|++.
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~----~--------~~~~~aD~vl~Vvd~~~ 181 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSE----T--------EVARMVDCFISLQIAGG 181 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHH----H--------HHHTTCSEEEEEECC--
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchH----H--------HHHHhCCEEEEEEeCCc
Confidence 01446789999999986421 1 11244599999999875
No 199
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.61 E-value=1e-07 Score=97.59 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=68.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHh---CC----------C---CcccC------CCcceeeeEEEEEEecCceEEEEeCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT---RA----------D---VDVQP------YAFTTKSLYVGHTDYKYLRWQVIDTPGI 295 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~---~~----------~---~~v~~------~~~tT~~~~~~~~~~~~~~~~liDTPG~ 295 (358)
.++|+|+|..++|||||.-+|+ |. . -.+.+ .-+.|.......+.|++..+.||||||.
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 3589999999999999999995 11 0 01111 1255555666678899999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 296 LDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 296 ~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
.|...+ ...+|+-+ |++++|+|+.+...-..+..++.+.+ . +.|.|++
T Consensus 111 vDF~~E--------v~raL~~~-DgAvlVvda~~GV~~qT~~v~~~a~~---~--~lp~i~f 158 (548)
T 3vqt_A 111 QDFSED--------TYRVLTAV-DSALVVIDAAKGVEAQTRKLMDVCRM---R--ATPVMTF 158 (548)
T ss_dssp GGCSHH--------HHHHHHSC-SEEEEEEETTTBSCHHHHHHHHHHHH---T--TCCEEEE
T ss_pred HHHHHH--------HHHHHHhc-CceEEEeecCCCcccccHHHHHHHHH---h--CCceEEE
Confidence 987532 23466666 99999999998554333333333332 2 5666543
No 200
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.58 E-value=1.3e-07 Score=94.29 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=61.9
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHhCC---------------CCcccCCCcceeeeEEEEEEec-----------CceEE
Q psy15712 235 DPFTRTIIICGFPNVGKSSFLNKITRA---------------DVDVQPYAFTTKSLYVGHTDYK-----------YLRWQ 288 (358)
Q Consensus 235 ~~~~~~I~lvG~~nvGKSSLin~L~~~---------------~~~v~~~~~tT~~~~~~~~~~~-----------~~~~~ 288 (358)
+.+...|+|+|.+++|||||+|.|+|. ....-....||...+.|.+.|. ...+.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEE
Confidence 335568999999999999999999864 2222223336666777766663 23689
Q ss_pred EEeCCCCCCCCcchHHHHHHHHHHHHhh-cccEEEEEEeCCCCCCCCHHHHHHHHHHH
Q psy15712 289 VIDTPGILDHSLEDRNIIEMQAVTALAH-LRAAVLYFIDISEQCGHSIQEQIGLFKSI 345 (358)
Q Consensus 289 liDTPG~~~~~~~~~~~ie~~~~~~l~~-~~d~iL~VvD~s~~~~~~~~~q~~ll~~i 345 (358)
++||||+.+...+..... .+.++.- +.++++| .+.........+++.++-++
T Consensus 144 llDTeG~~~~~~~~~~d~---~ifal~~lLSs~~Iy--N~~~~i~~~~l~~L~~~~e~ 196 (447)
T 3q5d_A 144 LMDTQGTFDSQSTLRDSA---TVFALSTMISSIQVY--NLSQNVQEDDLQHLQLFTEY 196 (447)
T ss_dssp EEEEECCCSSHHHHHHHH---HHHHHHHHHCSEEEE--EESSSCCHHHHHHHHHHHHH
T ss_pred EEcCCcccccccchhhhH---HHHHHHHHHhhHHHH--hhcccccHHHHHHHHHHHHH
Confidence 999999976532111111 2223332 2355444 44444444444455555444
No 201
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.57 E-value=4.8e-07 Score=91.16 Aligned_cols=198 Identities=20% Similarity=0.238 Sum_probs=108.9
Q ss_pred HHhhhhhhHHHHHHHHHhHhhhCCCCCCCchhHHHHHHHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCChHHH
Q psy15712 117 YMRKIKYTQSNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLYRC 196 (358)
Q Consensus 117 ~~~~l~~~~~~~~~~l~~i~~~fp~~d~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~~~~ 196 (358)
+.+.|..+...+.+.|.+++.+ ..+|+ +++++|.+.|...| ..+..+..++.++.+.... +......
T Consensus 199 l~~~l~kt~~~l~~~l~~~~~~-~~ide--~~l~el~~~Ll~aD------v~~~~~~~l~~~l~~~~~~--~~~~~~~-- 265 (503)
T 2yhs_A 199 LKRSLLKTKENLGSGFISLFRG-KKIDD--DLFEELEEQLLIAD------VGVETTRKIITNLTEGASR--KQLRDAE-- 265 (503)
T ss_dssp HHHHTHHHHTTSTTHHHHHHTT-CBCSH--HHHHHHHHHHHHTT------CCHHHHHHHHHHHHHHHHH--HTCCBGG--
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-CCCCH--HHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHh--ccCCCHH--
Confidence 4556888888888888888865 55664 68899999888877 4466677777777665543 1111111
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhC------CCCcccCC-C
Q psy15712 197 KQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITR------ADVDVQPY-A 269 (358)
Q Consensus 197 ~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~------~~~~v~~~-~ 269 (358)
++++.....+..++... ...+.-.-.....++++|.+|+|||||++.|.+ .++.+... .
T Consensus 266 -~~~~~l~~~l~~~l~~~-------------~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 266 -ALYGLLKEEMGEILAKV-------------DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp -GHHHHHHHHHHHHHHTT-------------BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred -HHHHHHHHHHHHHhCCC-------------CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 12222222222222110 001111112355899999999999999999974 23332211 1
Q ss_pred cce--------e--eeEEEEEE-------------------ecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHh----h
Q psy15712 270 FTT--------K--SLYVGHTD-------------------YKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALA----H 316 (358)
Q Consensus 270 ~tT--------~--~~~~~~~~-------------------~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~----~ 316 (358)
+.. . ....+.+. ..+..+.++||+|........+..+... ....+ .
T Consensus 332 ~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~ki-v~iar~l~~~ 410 (503)
T 2yhs_A 332 FRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKI-VRVMKKLDVE 410 (503)
T ss_dssp TCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHH-HHHHHTTCTT
T ss_pred cchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHH-HHHHHHhccC
Confidence 110 0 00011110 1245789999999976543333333322 12222 2
Q ss_pred cccEEEEEEeCCCCCCCCHHHHHHHHHH
Q psy15712 317 LRAAVLYFIDISEQCGHSIQEQIGLFKS 344 (358)
Q Consensus 317 ~~d~iL~VvD~s~~~~~~~~~q~~ll~~ 344 (358)
.++-+++|+|++. +.+...+++.|..
T Consensus 411 ~P~evLLvLDatt--Gq~al~~ak~f~~ 436 (503)
T 2yhs_A 411 APHEVMLTIDAST--GQNAVSQAKLFHE 436 (503)
T ss_dssp CSSEEEEEEEGGG--THHHHHHHHHHHH
T ss_pred CCCeeEEEecCcc--cHHHHHHHHHHHh
Confidence 2567899999876 5444455555544
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.47 E-value=2.1e-07 Score=89.56 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
....++++|.||+|||||+|.|+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 203
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.47 E-value=1e-06 Score=83.44 Aligned_cols=62 Identities=27% Similarity=0.388 Sum_probs=30.4
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCCCC-cccCCC------cceeeeE-EEE-EEec--CceEEEEeCCCCCC
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYA------FTTKSLY-VGH-TDYK--YLRWQVIDTPGILD 297 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~~~-~v~~~~------~tT~~~~-~~~-~~~~--~~~~~liDTPG~~~ 297 (358)
.-..+|+++|.+|||||||+|+|++... ..+..+ ..|.... .+. .... ...+++|||||+..
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 3457899999999999999999998632 221111 0121111 111 1111 23679999999953
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.45 E-value=1.2e-06 Score=86.90 Aligned_cols=65 Identities=25% Similarity=0.300 Sum_probs=34.9
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCC-------CcceeeeEEEEE-EecC--ceEEEEeCCCCCCC
Q psy15712 234 IDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPY-------AFTTKSLYVGHT-DYKY--LRWQVIDTPGILDH 298 (358)
Q Consensus 234 ~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~-------~~tT~~~~~~~~-~~~~--~~~~liDTPG~~~~ 298 (358)
.+.-.+.|+++|.+|||||||+|.|+|........ +.++.....+.. ...+ ..+.+|||||+...
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 44456789999999999999999999876421111 111111111111 1112 26789999999754
No 205
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.44 E-value=1.2e-06 Score=86.89 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=61.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCc---ccC-CCcceeeeEEEEEEecC--ceEEEEeCCCCCCCCcch------HHHH
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVD---VQP-YAFTTKSLYVGHTDYKY--LRWQVIDTPGILDHSLED------RNII 306 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~---v~~-~~~tT~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~------~~~i 306 (358)
++++|+|.+|+|||||+|.|+|..+. +.. .+..+...........+ ..+.++||||+....... ...+
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 45999999999999999999997532 111 23334332211111112 267899999997643211 0112
Q ss_pred HHHHHHHHhhc----------c----c-EEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 307 EMQAVTALAHL----------R----A-AVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 307 e~~~~~~l~~~----------~----d-~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
..++..++... . | +++||+|++++.. . .++++++.+. .+.|+|+|
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~--~-~Dieilk~L~---~~~~vI~V 182 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK--S-LDLVTMKKLD---SKVNIIPI 182 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C--H-HHHHHHHHTC---SCSEEEEE
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC--H-HHHHHHHHHh---hCCCEEEE
Confidence 22222233221 1 2 4667777765332 2 2367777775 36788876
No 206
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.43 E-value=7.3e-07 Score=90.29 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=59.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh------CCCCc-ccCCCcc-----------ee-eeE-EEE----------------E
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT------RADVD-VQPYAFT-----------TK-SLY-VGH----------------T 280 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~------~~~~~-v~~~~~t-----------T~-~~~-~~~----------------~ 280 (358)
...+|+++|.+||||||++++|. |.++. +..-++. ++ .+. ... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999 66643 2221100 00 010 110 0
Q ss_pred EecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHH
Q psy15712 281 DYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKS 344 (358)
Q Consensus 281 ~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~ 344 (358)
.+.+..+.||||||...........+.... .+ . .+|.+++|+|++. +.....+...+.+
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~-~~-i-~pd~vllVvDa~~--g~~~~~~a~~~~~ 238 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVA-NA-I-QPDNIVYVMDASI--GQACEAQAKAFKD 238 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHH-HH-H-CCSEEEEEEETTC--CTTHHHHHHHHHH
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHH-hh-h-cCceEEEEEeccc--cccHHHHHHHHHh
Confidence 125678999999999754322222222211 11 1 4699999999987 3344444444443
No 207
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.42 E-value=7.8e-06 Score=77.45 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=68.0
Q ss_pred HhhhhhhHHHHHHHHHhHhhhCCCCCCCchhHHHHHHHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCChHHHH
Q psy15712 118 MRKIKYTQSNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLYRCK 197 (358)
Q Consensus 118 ~~~l~~~~~~~~~~l~~i~~~fp~~d~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~~~~~ 197 (358)
...++.+...+. .+.+++.+...+| +.++++++.+.+...| ...+.+..++.++.+.... .... ...
T Consensus 4 ~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~l~~~L~~~d------v~~~~~~~~~~~~~~~~~~--~~~~---~~~ 70 (302)
T 3b9q_A 4 FSGFSKTRENLA-VIDELLLFWNLAE-TDRVLDELEEALLVSD------FGPKITVRIVERLREDIMS--GKLK---SGS 70 (302)
T ss_dssp HHHTHHHHHHHT-HHHHHHTTCCGGG-HHHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHHHHT--TSCC---SHH
T ss_pred HHHHHHHHHHHH-HHHHHHcCCCcCC-HHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHhh--cCCC---CHH
Confidence 345777777787 8888876656676 5678899999888877 3355666666666544332 1111 111
Q ss_pred HHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 198 QLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 198 ~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
++.+.....+..++... .....+.-.....-.++++|.+|+||||+++.|++
T Consensus 71 ~~~~~~~~~l~~~l~~~-----------~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 71 EIKDALKESVLEMLAKK-----------NSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp HHHHHHHHHHHHHHCC-------------CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-----------ccccccccccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 22222222222211100 00000100012345889999999999999999974
No 208
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.41 E-value=1.2e-06 Score=81.77 Aligned_cols=114 Identities=22% Similarity=0.284 Sum_probs=59.8
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCc-cc-------CCCcceeeeEEEEEEec---CceEEEEeCCCCCCCCcch-----
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADVD-VQ-------PYAFTTKSLYVGHTDYK---YLRWQVIDTPGILDHSLED----- 302 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~~-v~-------~~~~tT~~~~~~~~~~~---~~~~~liDTPG~~~~~~~~----- 302 (358)
++++++|.+|+|||||+|.|+|.... .+ +.+.++.....+.+.-. ...+.++||||+.......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 68999999999999999999974321 11 12222222222222111 1267899999997653211
Q ss_pred -HHHHHHHHHHHHhh-c------------ccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 303 -RNIIEMQAVTALAH-L------------RAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 303 -~~~ie~~~~~~l~~-~------------~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
...++......+.. + +.+.++++|.+.. +.... ..+++..+... .++|+|
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~l-D~~~l~~L~~~---~~vI~V 146 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPL-DLEFMKHLSKV---VNIIPV 146 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHH-HHHHHHHHHTT---SEEEEE
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHH-HHHHHHHHHhc---CcEEEE
Confidence 11112112222211 0 1678899996632 22222 36677777653 566665
No 209
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.34 E-value=3.5e-07 Score=95.35 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=68.1
Q ss_pred cEEEEecCCCCCHHHHHHHHh---CCC---Ccc------cCCC------cceeeeEEEEEEecCceEEEEeCCCCCCCCc
Q psy15712 239 RTIIICGFPNVGKSSFLNKIT---RAD---VDV------QPYA------FTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~---~~~---~~v------~~~~------~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~ 300 (358)
++|+|+|...+|||||..+|. |.- ..+ .++. +.|.......+.|++..+.||||||..|...
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 479999999999999999995 211 111 1211 4555556666788999999999999987642
Q ss_pred chHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHH
Q psy15712 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSI 345 (358)
Q Consensus 301 ~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i 345 (358)
+ ...+++-+ |++++|+|+.+......+..++.+.+.
T Consensus 83 E--------v~raL~~~-DgavlVVDa~~GV~~qT~~v~~~a~~~ 118 (638)
T 3j25_A 83 E--------VYRSLSVL-DGAILLISAKDGVQAQTRILFHALRKM 118 (638)
T ss_dssp H--------HHHHHTTC-SEEECCEESSCTTCSHHHHHHHHHHHH
T ss_pred H--------HHHHHHHh-CEEEEEEeCCCCCcHHHHHHHHHHHHc
Confidence 1 33466666 999999999986554444445544443
No 210
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.33 E-value=1.3e-06 Score=86.93 Aligned_cols=87 Identities=21% Similarity=0.298 Sum_probs=51.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC------CCCc-ccCC------------------------CcceeeeEE----EEEEe
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR------ADVD-VQPY------------------------AFTTKSLYV----GHTDY 282 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~------~~~~-v~~~------------------------~~tT~~~~~----~~~~~ 282 (358)
...|+++|.+||||||++++|.+ .++. +..- +++|.++.. ....+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 45899999999999999999975 3332 1111 002332210 00012
Q ss_pred cCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhh--cccEEEEEEeCCC
Q psy15712 283 KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAH--LRAAVLYFIDISE 329 (358)
Q Consensus 283 ~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~--~~d~iL~VvD~s~ 329 (358)
.+..+.++||||.... +...+... ..+.. .+|.+++|+|++.
T Consensus 179 ~~~D~vIIDT~G~~~~---~~~l~~~l--~~i~~~~~~d~vllVvda~~ 222 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE---EKGLLEEM--KQIKEITNPDEIILVIDGTI 222 (432)
T ss_dssp SSCSEEEEECCCSCSS---HHHHHHHH--HHTTSSSCCSEEEEEEEGGG
T ss_pred hCCCEEEEcCCCCccc---cHHHHHHH--HHHHHHhcCcceeEEeeccc
Confidence 4568999999998753 11111111 12222 2589999999876
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.32 E-value=5.7e-06 Score=82.36 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=60.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh------CCCCc-ccCCCcce------------eeeEEEE-----------------E
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT------RADVD-VQPYAFTT------------KSLYVGH-----------------T 280 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~------~~~~~-v~~~~~tT------------~~~~~~~-----------------~ 280 (358)
+...|+++|.+||||||+++.|. |.++. +..-++.. .+..... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999997 44442 11111100 0000000 0
Q ss_pred EecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHH
Q psy15712 281 DYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKS 344 (358)
Q Consensus 281 ~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~ 344 (358)
...+..+.|+||||...........+.. +.... .+|.+++|+|++. +.+...+...|.+
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~--i~~~~-~pd~vlLVvDA~~--gq~a~~~a~~f~~ 237 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQ--ISNVI-HPHEVILVIDGTI--GQQAYNQALAFKE 237 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHH--HHHHH-CCSEEEEEEEGGG--GGGHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHH--HHHhh-cCceEEEEEeCCC--chhHHHHHHHHHh
Confidence 0134689999999987644333333222 22222 2588999999987 5555556655553
No 212
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.32 E-value=7.5e-06 Score=78.24 Aligned_cols=118 Identities=15% Similarity=0.283 Sum_probs=65.7
Q ss_pred hhhhhhHHHHHHHHHhHhhhCCCCCCCchhHHHHHHHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCChHHHHH
Q psy15712 119 RKIKYTQSNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLYRCKQ 198 (358)
Q Consensus 119 ~~l~~~~~~~~~~l~~i~~~fp~~d~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~~~~~~ 198 (358)
+.++.+...+.+.|.+++.+...+++ ++++++.+.|...| ..++.+..++.++.+... . ......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~d------v~~~~~~~~~~~~~~~~~----~-~~~~~~-- 73 (320)
T 1zu4_A 9 KAMLKSAFNFSKDIKKLSKKYKQADD--EFFEELEDVLIQTD------MGMKMVLKVSNLVRKKTK----R-DTSFEN-- 73 (320)
T ss_dssp HHTHHHHHHHHHHHHHHHHTCCCCSH--HHHHHHHHHHHHTT------CCHHHHHHHHHHHHHHCC----T-TCCHHH--
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHh----h-chhHHH--
Confidence 45677778888888888876566665 57888888888877 335555556655543321 1 111111
Q ss_pred HHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHh
Q psy15712 199 LKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 199 l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
+++.....+..++...... ..+..+.-.......|+++|.+|+||||++..|.
T Consensus 74 ~~~~~~~~l~~~l~~~~~~--------~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 74 IKDALVESLYQAYTDNDWT--------NKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp HHHHHHHHHHHHHHCSCC------------CCCCCCTTSCEEEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccc--------ccccCccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 2222222222222110000 0001111112345689999999999999999986
No 213
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.31 E-value=2.5e-06 Score=84.80 Aligned_cols=176 Identities=14% Similarity=0.139 Sum_probs=89.4
Q ss_pred CCchhHHHHHHHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHhHHHHHHHHhhhhHHHHH
Q psy15712 144 NIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLYRCKQLKKAALGRMATIMKRQASNLEYLEQ 223 (358)
Q Consensus 144 ~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~~~~~~l~~~~~gr~~~i~~~~~~~l~~l~~ 223 (358)
.++++++++...+...| ..++.+...+.++.+..... +-..+.....++.+....++..++...
T Consensus 23 ~~~~~l~el~~~Ll~aD------v~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~v~~~v~~eL~~~L~~~--------- 86 (433)
T 3kl4_A 23 AVDEFIKDLQKSLISSD------VNVKLVFSLTAKIKERLNKE-KPPSVLERKEWFISIVYDELSKLFGGD--------- 86 (433)
T ss_dssp HHHHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHHHHHS-CCCTTCCHHHHHHHHHHHHHHHHHCSS---------
T ss_pred HHHHHHHHHHHHHHHcC------CChHHHHHHHHHHHHHHhcc-cccccCChHHHHHHHHHHHHHHhcCcc---------
Confidence 35677788888777776 34666666666766655430 101111112222222222222211100
Q ss_pred HHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHh------CCCCcc-c-C------------------CCccee----
Q psy15712 224 VRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKIT------RADVDV-Q-P------------------YAFTTK---- 273 (358)
Q Consensus 224 ~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~------~~~~~v-~-~------------------~~~tT~---- 273 (358)
-............|+++|.+|+||||+++.|. |.++.+ + + .|..+.
T Consensus 87 ----~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~ 162 (433)
T 3kl4_A 87 ----KEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQ 162 (433)
T ss_dssp ----SCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCS
T ss_pred ----ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccC
Confidence 00001112346789999999999999999997 444321 1 0 000000
Q ss_pred eeE------EEEEEecCceEEEEeCCCCCC--CCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHH
Q psy15712 274 SLY------VGHTDYKYLRWQVIDTPGILD--HSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKS 344 (358)
Q Consensus 274 ~~~------~~~~~~~~~~~~liDTPG~~~--~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~ 344 (358)
++. .......+..+.++||||... ........+.. ..... .++.+++|+|++. +.....+...|.+
T Consensus 163 dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~--i~~~~-~pd~vlLVlDa~~--gq~a~~~a~~f~~ 236 (433)
T 3kl4_A 163 NPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKE--MYDVL-KPDDVILVIDASI--GQKAYDLASRFHQ 236 (433)
T ss_dssp CHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHH--HHHHH-CCSEEEEEEEGGG--GGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHH--HHHhh-CCcceEEEEeCcc--chHHHHHHHHHhc
Confidence 000 000011256889999999876 33222222222 11112 2588999999986 5555566666664
No 214
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.24 E-value=2.7e-05 Score=75.56 Aligned_cols=199 Identities=13% Similarity=0.097 Sum_probs=99.7
Q ss_pred hhhhhhHHHHHHHHHhHhhhCCCCCCCchhHHHHHHHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCChHHHHH
Q psy15712 119 RKIKYTQSNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLYRCKQ 198 (358)
Q Consensus 119 ~~l~~~~~~~~~~l~~i~~~fp~~d~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~~~~~~ 198 (358)
..+..+.+.+. .+..++.+...+| +.++++++.+.|...| ..++.+..++.++.+.... +... ...+
T Consensus 62 ~~l~~~~~~~~-~~~~l~~~~~~~~-~~~~~~~l~~~Ll~ad------v~~~~~~~~~~~~~~~~~~--~~~~---~~~~ 128 (359)
T 2og2_A 62 SGFSKTRENLA-VIDELLLFWNLAE-TDRVLDELEEALLVSD------FGPKITVRIVERLREDIMS--GKLK---SGSE 128 (359)
T ss_dssp HHTHHHHHHHT-HHHHHHTTCCGGG-HHHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHHHHT--TSCC---SHHH
T ss_pred HHHHHHHHHHH-HHHHHhcCCCcCC-HHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHhh--cCCC---CHHH
Confidence 44555666665 6666654445555 5788899998888877 3355666666666554332 1111 1122
Q ss_pred HHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhC------CCCcccCCCcc-
Q psy15712 199 LKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITR------ADVDVQPYAFT- 271 (358)
Q Consensus 199 l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~------~~~~v~~~~~t- 271 (358)
+++.....+..++... . ....+.-.....-.++++|.+|+|||||++.|++ .++.....+..
T Consensus 129 ~~~~l~~~l~~~l~~~----------~-~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 129 IKDALKESVLEMLAKK----------N-SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp HHHHHHHHHHHHHCCC--------------CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred HHHHHHHHHHHHhCCc----------c-cCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 2222222222211100 0 0000100012345899999999999999999984 22222111110
Q ss_pred --------ee--eeEEEEEE--------------------ecCceEEEEeCCCCCCCCcchHHHHHHHHHH---HHhhcc
Q psy15712 272 --------TK--SLYVGHTD--------------------YKYLRWQVIDTPGILDHSLEDRNIIEMQAVT---ALAHLR 318 (358)
Q Consensus 272 --------T~--~~~~~~~~--------------------~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~---~l~~~~ 318 (358)
+. ....+.+. ..+....++||.|+..........+.++... ++...+
T Consensus 198 ~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P 277 (359)
T 2og2_A 198 AAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAP 277 (359)
T ss_dssp HHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred cchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 00 00011110 0133568999999976543333333332221 222335
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHH
Q psy15712 319 AAVLYFIDISEQCGHSIQEQIGLFK 343 (358)
Q Consensus 319 d~iL~VvD~s~~~~~~~~~q~~ll~ 343 (358)
+-+++|+|++. +.+...+...+.
T Consensus 278 ~e~lLvLDptt--glD~~~~~~~~~ 300 (359)
T 2og2_A 278 NEILLVLDGNT--GLNMLPQAREFN 300 (359)
T ss_dssp SEEEEEEEGGG--GGGGHHHHHHHH
T ss_pred CceEEEEcCCC--CCCHHHHHHHHH
Confidence 67789999665 555555555443
No 215
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.20 E-value=7.2e-07 Score=79.31 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.+.|+++|.+|||||||+|+|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999854
No 216
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.19 E-value=3.8e-06 Score=79.81 Aligned_cols=105 Identities=14% Similarity=0.231 Sum_probs=63.8
Q ss_pred HHhhhhhhHHHHHHHHHhHhhhCCCCCCCchhHHHHHHHHhhcccchhhhhHHHHHHhhHHHHHHHHHHHHhccCChHHH
Q psy15712 117 YMRKIKYTQSNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLYRC 196 (358)
Q Consensus 117 ~~~~l~~~~~~~~~~l~~i~~~fp~~d~~~pfy~~ll~i~~~~~~~k~al~~v~~a~~~~~~l~~~~~~~~k~~~~~~~~ 196 (358)
+...++.+...+.+.|.+++.+. .+|+ ++++++.+.+...| ...+.++.++.++.+ .++.
T Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~l~~~L~~~d------v~~~~~~~~~~~~~~---------~~~~-- 78 (306)
T 1vma_A 19 LKKGLQKTKETFFGRVVKLLKGK-KLDD--ETREELEELLIQAD------VGVETTEYILERLEE---------KDGD-- 78 (306)
T ss_dssp HHHHHHHHHHHTHHHHHHHHTTC-CCCH--HHHHHHHHHHHHTT------CCHHHHHHHHHHHTT---------CCSC--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCCH--HHHHHHHHHHHHCC------CCHHHHHHHHHHHHh---------cCHH--
Confidence 44568888999999999998755 6765 68888888888777 224444444444432 1111
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHhccCCC--C-CCCCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 197 KQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPS--I-DPFTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 197 ~~l~~~~~gr~~~i~~~~~~~l~~l~~~~~~l~~l~~--~-~~~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
+++..... +.+.+..... . ......|+++|.+|+||||++..|.+
T Consensus 79 --~~~~~~~~-----------------l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 79 --ALESLKEI-----------------ILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp --HHHHHHHH-----------------HHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred --HHHHHHHH-----------------HHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence 11111111 1222211101 1 12345789999999999999999873
No 217
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.17 E-value=6.8e-06 Score=86.59 Aligned_cols=88 Identities=24% Similarity=0.234 Sum_probs=55.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC--------CCc----ccC------CCcceeeeEEEEEEec-------CceEEEEe
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA--------DVD----VQP------YAFTTKSLYVGHTDYK-------YLRWQVID 291 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~--------~~~----v~~------~~~tT~~~~~~~~~~~-------~~~~~liD 291 (358)
+-++|+|+|...+|||||.-+|.-. ++. +.+ .-+.|.....-.+.|. +..+.|||
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3468999999999999999998611 111 111 1134444444455554 45789999
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCC
Q psy15712 292 TPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGH 333 (358)
Q Consensus 292 TPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~ 333 (358)
|||..|...+ ...+|+-+ |++|+|+|+.+....
T Consensus 92 TPGHvDF~~E--------v~~aLr~~-DgavlvVDaveGV~~ 124 (709)
T 4fn5_A 92 TPGHVDFTIE--------VERSLRVL-DGAVVVFCGTSGVEP 124 (709)
T ss_dssp CCSCTTCHHH--------HHHHHHHC-SEEEEEEETTTCSCH
T ss_pred CCCCcccHHH--------HHHHHHHh-CeEEEEEECCCCCch
Confidence 9999886421 23456666 999999999985433
No 218
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.03 E-value=1.3e-05 Score=76.08 Aligned_cols=105 Identities=20% Similarity=0.184 Sum_probs=58.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC------CCCcccCCCcce-------------eee--EEEEE---------------
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR------ADVDVQPYAFTT-------------KSL--YVGHT--------------- 280 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~------~~~~v~~~~~tT-------------~~~--~~~~~--------------- 280 (358)
....++++|.+|+|||||++.|.+ .++.+....... ..+ .....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 355899999999999999999973 222211111000 000 00000
Q ss_pred EecCceEEEEeCCCCCCCCcchHHHHHHHHHH---HHhhcccEEEEEEeCCCCCCCCHHHHHHHHH
Q psy15712 281 DYKYLRWQVIDTPGILDHSLEDRNIIEMQAVT---ALAHLRAAVLYFIDISEQCGHSIQEQIGLFK 343 (358)
Q Consensus 281 ~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~---~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~ 343 (358)
...+..+.++||+|...........+.++... ++...++.+++++|++. +....+++..+.
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t--~~~~~~~~~~~~ 244 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT--GQNGLEQAKKFH 244 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB--CTHHHHHHHHHH
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH--HHHHHHHHHHHH
Confidence 01234678999999976544444444433221 22334677888999876 444444444443
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.99 E-value=3.4e-05 Score=76.23 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=55.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC----Cc--ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHH
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD----VD--VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAV 311 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~----~~--v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~ 311 (358)
...++++|.+|+|||||+|.|+|-. .. +... .+|+....... .....+.++|+||+..........++.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~-~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~--- 143 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV-EVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEK--- 143 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe-ecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHH---
Confidence 4589999999999999999999842 11 2121 12322111111 112368999999996432211111111
Q ss_pred HHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHcccCCCCeEEEe
Q psy15712 312 TALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKVGPLE 357 (358)
Q Consensus 312 ~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~~~f~~kPvilv 357 (358)
..+.+. +..++ ++... ...+.+.+...+... ++|+++|
T Consensus 144 ~~L~~~-~~~~~-lS~G~----~~kqrv~la~aL~~~--~~p~~lV 181 (413)
T 1tq4_A 144 MKFYEY-DFFII-ISATR----FKKNDIDIAKAISMM--KKEFYFV 181 (413)
T ss_dssp TTGGGC-SEEEE-EESSC----CCHHHHHHHHHHHHT--TCEEEEE
T ss_pred cCCCcc-CCeEE-eCCCC----ccHHHHHHHHHHHhc--CCCeEEE
Confidence 122232 44444 55432 223445555555443 5787776
No 220
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.99 E-value=1.2e-06 Score=79.92 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh-----CCCCc
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT-----RADVD 264 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~-----~~~~~ 264 (358)
....++++|.+||||||+++.|. |.++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~ 45 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 45 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 45788999999999999999998 66653
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.97 E-value=5.6e-05 Score=72.42 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=57.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC------CCcccCCCcce-------------eeeEEEEEE----------------
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA------DVDVQPYAFTT-------------KSLYVGHTD---------------- 281 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~------~~~v~~~~~tT-------------~~~~~~~~~---------------- 281 (358)
....++++|.+|+||||+++.|.+. ++.....+... .++......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999852 22211111000 000000000
Q ss_pred -ecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHH
Q psy15712 282 -YKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFK 343 (358)
Q Consensus 282 -~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~ 343 (358)
..+..+.++||+|...........+.... .++ .+|-.++|+|++. +....+++..+.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~-ral--~~de~llvLDa~t--~~~~~~~~~~~~ 265 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIA-RVT--KPNLVIFVGDALA--GNAIVEQARQFN 265 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHH-HHH--CCSEEEEEEEGGG--TTHHHHHHHHHH
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHH-HHh--cCCCCEEEEecHH--HHHHHHHHHHHH
Confidence 02456789999999765544444443322 122 3588999999876 444444454444
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.88 E-value=0.00014 Score=68.62 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~ 259 (358)
...++++|.+|+||||+++.|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5688999999999999999997
No 223
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.87 E-value=3.2e-05 Score=76.82 Aligned_cols=102 Identities=18% Similarity=0.312 Sum_probs=57.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh-------CCCCcc-cCCCccee--------------eeEEE---------------E
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT-------RADVDV-QPYAFTTK--------------SLYVG---------------H 279 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~-------~~~~~v-~~~~~tT~--------------~~~~~---------------~ 279 (358)
....|+++|.+||||||+...|. |.++.+ ..-++.+. ++... .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45688999999999999999997 555431 11111100 00000 0
Q ss_pred EEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHH
Q psy15712 280 TDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFK 343 (358)
Q Consensus 280 ~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~ 343 (358)
....+..+.||||||.........+.+ ..... ...++.+++|+|++. +.+...+...+.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L--~~~~~-~~~p~~vllVvda~~--g~~~~~~~~~f~ 237 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEI--KQVHA-SINPVETLFVVDAMT--GQDAANTAKAFN 237 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHH--HHHHH-HSCCSEEEEEEETTB--CTTHHHHHHHHH
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHH--HHHHH-hhcCcceeEEeecch--hHHHHHHHHHHh
Confidence 011356899999999875322222211 11111 123688999999875 444444444444
No 224
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.79 E-value=0.00023 Score=73.66 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
..+.++++|.+|+|||||++.|+|-.
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCC
Confidence 34569999999999999999999864
No 225
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.75 E-value=1.2e-05 Score=71.43 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
..++|+++|.+|||||||+++|+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999854
No 226
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.69 E-value=5.8e-05 Score=71.25 Aligned_cols=55 Identities=31% Similarity=0.372 Sum_probs=35.6
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCC-CcccCCCc-------ceeeeEEEEEEecCceEEEEeCCCCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRAD-VDVQPYAF-------TTKSLYVGHTDYKYLRWQVIDTPGILD 297 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~~-------tT~~~~~~~~~~~~~~~~liDTPG~~~ 297 (358)
.+++++|.+|||||||+|.|. .. +..+.... +|..... .... ..-.++||||+..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~--~~~~-~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL--IPFG-KGSFVGDTPGFSK 228 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE--EEET-TTEEEESSCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--EEcC-CCcEEEECcCcCc
Confidence 478999999999999999999 43 33333332 4443322 2222 2347899999863
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.68 E-value=1e-05 Score=76.87 Aligned_cols=58 Identities=29% Similarity=0.375 Sum_probs=34.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC-CcccCCC-------cceeeeEEEEEEecCceEEEEeCCCCCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD-VDVQPYA-------FTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~-------~tT~~~~~~~~~~~~~~~~liDTPG~~~~~ 299 (358)
..+++++|.+|||||||+|.|.+.. ..++..+ .+|..... +... ...++||||+....
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTS--GGLVADTPGFSSLE 238 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEET--TEEEESSCSCSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhcC--CEEEecCCCccccc
Confidence 3489999999999999999999854 2333322 34544322 2222 34799999997643
No 228
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.66 E-value=0.00031 Score=69.91 Aligned_cols=105 Identities=15% Similarity=0.198 Sum_probs=59.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC------------------CCCcccC-CCcceeeeEEEEEE----e-cC--ceEEEE
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR------------------ADVDVQP-YAFTTKSLYVGHTD----Y-KY--LRWQVI 290 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~------------------~~~~v~~-~~~tT~~~~~~~~~----~-~~--~~~~li 290 (358)
+-..|+|+|.+++|||+|+|.|++ ..+.+++ ...+|+++-.+... . .+ ..+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 456788999999999999996651 1122221 23456666543211 1 22 358999
Q ss_pred eCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHH
Q psy15712 291 DTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSI 345 (358)
Q Consensus 291 DTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i 345 (358)
||.|+.+............++..+ +.+++|| ...+.......+++.++.++
T Consensus 146 DTEG~~d~~~~~~~d~~ifaLa~L--LSS~~Iy--N~~~~i~~~~L~~L~~~tel 196 (457)
T 4ido_A 146 DTQGTFDSQSTLRDSATVFALSTM--ISSIQVY--NLSQNVQEDDLQHLQLFTEY 196 (457)
T ss_dssp EECCBTCTTCCHHHHHHHHHHHHH--HCSEEEE--EEESSCCHHHHHHHHHHHHH
T ss_pred eccCCCCcccCccccHHHHHHHHH--Hhhheee--cccccCCHHHHHHHHHHHHH
Confidence 999998775443222222222222 1244444 44554455555667666554
No 229
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.54 E-value=0.0019 Score=63.83 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
....|+++|.+|+||||++..|.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45578999999999999999987
No 230
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.44 E-value=0.00013 Score=68.70 Aligned_cols=57 Identities=30% Similarity=0.453 Sum_probs=35.1
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCC-CcccCCC-------cceeeeEEEEEEecCceEEEEeCCCCCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRAD-VDVQPYA-------FTTKSLYVGHTDYKYLRWQVIDTPGILDH 298 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~-~~v~~~~-------~tT~~~~~~~~~~~~~~~~liDTPG~~~~ 298 (358)
..++++|.+|+|||||+|.|.+.. +..+... .+|..... .... ....++||||+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~~~~-~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LKFD-FGGYVVDTPGFANL 234 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EECT-TSCEEESSCSSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--EEcC-CCCEEEECcCCCcc
Confidence 478999999999999999999854 2233222 23333221 2222 23478999998654
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.43 E-value=5.8e-05 Score=73.16 Aligned_cols=58 Identities=31% Similarity=0.365 Sum_probs=36.7
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCC--cccCCC-------cceeeeEEEEEEecCceEEEEeCCCCCCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRADV--DVQPYA-------FTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~~--~v~~~~-------~tT~~~~~~~~~~~~~~~~liDTPG~~~~~ 299 (358)
.+++++|.+|||||||+|.|+|... ..+... ++|.....+.+. ....++||||+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~---q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP---HGGDVIDSPGVREFG 282 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT---TSCEEEECHHHHTCC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC---CCCEecCcccHHHhh
Confidence 4799999999999999999998543 222221 234443433332 233689999986653
No 232
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.28 E-value=2.4e-05 Score=69.65 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=39.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC--cccCCCcceeeeEEEEEEecCceEEEEeCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV--DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~ 295 (358)
...|+++|.+|||||||++.|.+... .....+.||+.+..+. .+|..+.++|+..+
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f 76 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEM 76 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHh
Confidence 45789999999999999999997543 2455667888776543 44555555555443
No 233
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.88 E-value=0.00038 Score=60.14 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=27.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCC--cccCCCcceeeeEEE
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADV--DVQPYAFTTKSLYVG 278 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~--~v~~~~~tT~~~~~~ 278 (358)
...++++|.+|+|||||++.|.+... .....+.+|+.+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~g 47 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD 47 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcc
Confidence 34799999999999999999987432 123445566655443
No 234
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.86 E-value=0.00033 Score=65.93 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
....++++|.+|+||||+++.|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999986
No 235
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.86 E-value=0.00087 Score=64.92 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=51.6
Q ss_pred eeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC--------CCCHHHHHHHHH
Q psy15712 272 TKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC--------GHSIQEQIGLFK 343 (358)
Q Consensus 272 T~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~--------~~~~~~q~~ll~ 343 (358)
|.++....+.+++..+++|||+|.... ...+..+++.. +++|||+|+|+.. .....+...++.
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~--------r~~w~~~f~~~-~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~ 258 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSE--------RKRWFECFDSV-TSILFLVSSSEFDQVLMEDRQTNRLTESLNIFE 258 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC---------------CTTSCTTC-CEEEEEEETTCTTCEETTEEEEEHHHHHHHHHH
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhh--------hhhHHHHhCCC-CEEEEEEECccccccccccccccHHHHHHHHHH
Confidence 555666677788889999999999421 11223344444 9999999999832 234556677888
Q ss_pred HHcc--cCCCCeEEEeC
Q psy15712 344 SIRP--LFNNKVGPLEY 358 (358)
Q Consensus 344 ~i~~--~f~~kPvilvf 358 (358)
.+.. .+.+.|+||++
T Consensus 259 ~i~~~~~~~~~piILv~ 275 (362)
T 1zcb_A 259 TIVNNRVFSNVSIILFL 275 (362)
T ss_dssp HHHTCGGGTTSEEEEEE
T ss_pred HHhcchhhCCCCEEEEE
Confidence 8764 46789998873
No 236
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.81 E-value=0.00059 Score=65.89 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=54.7
Q ss_pred eeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCC--------CCCHHHHHHHHH
Q psy15712 272 TKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC--------GHSIQEQIGLFK 343 (358)
Q Consensus 272 T~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~--------~~~~~~q~~ll~ 343 (358)
|.++....+.+++..+++|||+|.-... ..+..+++.. +++|||+|+|+.. .....+...++.
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r--------~~w~~yf~~a-~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~ 250 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSER--------KKWIHCFEGV-TAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 250 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGG--------GGGGGGCTTC-SEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHH
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhh--------HHHHHHHhcC-CEEEEEEECccccccccccchhhhHHHHHHHHH
Confidence 5566667777888899999999984321 1233344555 9999999999843 123556677888
Q ss_pred HHcc--cCCCCeEEEeC
Q psy15712 344 SIRP--LFNNKVGPLEY 358 (358)
Q Consensus 344 ~i~~--~f~~kPvilvf 358 (358)
++.. .+.+.|+||+.
T Consensus 251 ~i~~~~~~~~~piiLv~ 267 (353)
T 1cip_A 251 SICNNKWFTDTSIILFL 267 (353)
T ss_dssp HHHTCGGGTTSEEEEEE
T ss_pred HHHcCccccCCcEEEEE
Confidence 8765 46789998873
No 237
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.81 E-value=0.0021 Score=61.75 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=54.0
Q ss_pred eeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCC--------CCCCCHHHHHHHHH
Q psy15712 272 TKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISE--------QCGHSIQEQIGLFK 343 (358)
Q Consensus 272 T~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~--------~~~~~~~~q~~ll~ 343 (358)
|.++....+.+++..+++|||+|.. .....+..+++.. +++|||+|+|+ .......+...++.
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe--------~~R~~w~~yy~~a-~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~ 218 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQR--------SERKXWVSFFSDV-DCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFK 218 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCH--------HHHHHHHTTSCSC-SEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHH
T ss_pred eeeeEEEEEEeeeeeeccccCCCcc--------cccccHHHHhccC-CEEEEEEECCccccccccccccchHHHHHHHHH
Confidence 5566777778888899999999982 2333444555555 99999999982 12334555667777
Q ss_pred HHcc--cCCCCeEEEe
Q psy15712 344 SIRP--LFNNKVGPLE 357 (358)
Q Consensus 344 ~i~~--~f~~kPvilv 357 (358)
++.. .+.+.|++|+
T Consensus 219 ~i~~~~~~~~~piiLv 234 (340)
T 4fid_A 219 DIMTNEFLKGAVKLIF 234 (340)
T ss_dssp HHHHCGGGTTSEEEEE
T ss_pred HHhhhhccCCCeEEEE
Confidence 7753 4678899886
No 238
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.53 E-value=0.0024 Score=62.72 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=52.7
Q ss_pred eeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCC--------CCCCHHHHHHHHH
Q psy15712 272 TKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQ--------CGHSIQEQIGLFK 343 (358)
Q Consensus 272 T~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~--------~~~~~~~q~~ll~ 343 (358)
|.++....+.+++..+++|||+|.-... ..+..+++.. +++|||+|+|+- ...+..+...++.
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r--------~~w~~yf~~a-~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~ 274 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDER--------RKWIQCFNDV-TAIIFVVASSSYNMVIREDNQTNRLQEALNLFK 274 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGG--------GGGGGGTTTC-CEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHH
T ss_pred eeeeEEEEeecCCccceecccchhhhhh--------hhhHhhccCC-CEEEEEEECcccccccccccccchHHHHHHHHH
Confidence 4445555667778899999999984321 1233445555 999999999971 1234556677888
Q ss_pred HHcc--cCCCCeEEEeC
Q psy15712 344 SIRP--LFNNKVGPLEY 358 (358)
Q Consensus 344 ~i~~--~f~~kPvilvf 358 (358)
++.. .+.+.|+||+.
T Consensus 275 ~i~~~~~~~~~piiLvg 291 (402)
T 1azs_C 275 SIWNNRWLRTISVILFL 291 (402)
T ss_dssp HHHTCTTCSSCCEEEEE
T ss_pred HHHhcccCCCCeEEEEE
Confidence 8764 46788988873
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.46 E-value=0.0023 Score=56.32 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.0
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.....|+|+|.+|+|||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999975
No 240
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.45 E-value=0.0038 Score=59.62 Aligned_cols=77 Identities=17% Similarity=0.294 Sum_probs=52.8
Q ss_pred eeeeEEEEEEecCceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCC-------CC-CCCCHHHHHHHHH
Q psy15712 272 TKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDIS-------EQ-CGHSIQEQIGLFK 343 (358)
Q Consensus 272 T~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s-------~~-~~~~~~~q~~ll~ 343 (358)
|.++....+.+++..+++|||+|.. .....+..+++.. ++++||+|+| +. ......+...++.
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe--------~~R~~w~~yf~~~-~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~ 224 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQR--------SERRKWIHCFENV-TSIMFLVALSEYDQVLVESDNENRMEESKALFR 224 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSH--------HHHTTGGGGCSSC-SEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHH
T ss_pred eeeEEEEEEEeeceeeEEEEcCCch--------hHHHHHHHHhCCC-CEEEEEEECccccccccccccHhHHHHHHHHHH
Confidence 4556667777888899999999983 1222333455554 9999999887 32 2334555667888
Q ss_pred HHcc--cCCCCeEEEe
Q psy15712 344 SIRP--LFNNKVGPLE 357 (358)
Q Consensus 344 ~i~~--~f~~kPvilv 357 (358)
++.. .+.+.|++|+
T Consensus 225 ~i~~~~~~~~~~iiL~ 240 (327)
T 3ohm_A 225 TIITYPWFQNSSVILF 240 (327)
T ss_dssp HHHTSGGGTTCEEEEE
T ss_pred HHhhhhccCCceEEEE
Confidence 8764 4678899886
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.30 E-value=0.0015 Score=57.28 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=20.4
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..++++|.+|+|||||++.|++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 242
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.30 E-value=0.011 Score=55.48 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....++++|.+|+||||++..|.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999873
No 243
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.29 E-value=0.0025 Score=56.28 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
....|+++|.+|+|||||++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998754
No 244
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.26 E-value=0.0017 Score=58.25 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
....++++|.+|+|||||++.|++..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34589999999999999999999754
No 245
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.22 E-value=0.0028 Score=54.44 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=21.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...++++|.+|+|||||++.|++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999999885
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.17 E-value=0.0019 Score=56.71 Aligned_cols=39 Identities=28% Similarity=0.282 Sum_probs=28.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC--cccCCCcceeeeEEE
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADV--DVQPYAFTTKSLYVG 278 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~--~v~~~~~tT~~~~~~ 278 (358)
.|+|+|++|||||||++.|..... ..-..++||+.+..+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~g 43 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAG 43 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCC
Confidence 488999999999999999986543 223556777765433
No 247
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.17 E-value=0.0023 Score=55.51 Aligned_cols=22 Identities=45% Similarity=0.759 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.++++|.+|+|||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.15 E-value=0.0028 Score=55.04 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...++++|.+|+|||||++.|++.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 347999999999999999999874
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.03 E-value=0.0032 Score=55.41 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3478999999999999999998743
No 250
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.97 E-value=0.0059 Score=52.89 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=33.4
Q ss_pred CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHHHc
Q psy15712 284 YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIR 346 (358)
Q Consensus 284 ~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~i~ 346 (358)
...+.|+||||.... ....++... |.+++++.++..+ ......++.+..+.
T Consensus 75 ~yD~viiD~~~~~~~----------~~~~~l~~a-d~viiv~~~~~~~-~~~~~~~~~l~~~~ 125 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV----------ITSAAVMVS-DLVIIPVTPSPLD-FSAAGSVVTVLEAQ 125 (206)
T ss_dssp TSSEEEEECCSSSSH----------HHHHHHHHC-SEEEEEECSCTTT-HHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCH----------HHHHHHHHC-CEEEEEecCCHHH-HHHHHHHHHHHHHH
Confidence 458899999998621 122344444 9999999987766 55555556666554
No 251
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.96 E-value=0.003 Score=54.61 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.++++|.+|+|||||++.|++.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999864
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.90 E-value=0.0035 Score=55.89 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
...++++|.+|+|||||++.|+|..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4478999999999999999998743
No 253
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.81 E-value=0.0051 Score=59.30 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=48.5
Q ss_pred eeeeEEEEEEec------CceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCC--------CCCCCHHH
Q psy15712 272 TKSLYVGHTDYK------YLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISE--------QCGHSIQE 337 (358)
Q Consensus 272 T~~~~~~~~~~~------~~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~--------~~~~~~~~ 337 (358)
|.++....+.++ ...+++|||+|..... ..+..+++.. +++++|+|+++ ....+.++
T Consensus 164 T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r--------~~~~~y~~~~-~~iI~v~dis~ydq~l~e~~~~~s~~~ 234 (354)
T 2xtz_A 164 TTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNER--------RKWIHLFEGV-TAVIFCAAISEYDQTLFEDEQKNRMME 234 (354)
T ss_dssp CCSEEEEEECCCCE------EEEEEEECCSTTGG--------GGTGGGCTTE-EEEEEEEEGGGTTCBCSSCTTSBHHHH
T ss_pred ccceeeEEEEeccCccccceeeEEEECCCchhhh--------HHHHHHhCCC-CEEEEEEECcccccccccccchhHHHH
Confidence 444555555553 3578999999985321 1123344555 99999999981 22344566
Q ss_pred HHHHHHHHcc--cCCCCeEEEe
Q psy15712 338 QIGLFKSIRP--LFNNKVGPLE 357 (358)
Q Consensus 338 q~~ll~~i~~--~f~~kPvilv 357 (358)
...++.++.. .+.+.|+||+
T Consensus 235 ~~~~~~~i~~~~~~~~~piiLv 256 (354)
T 2xtz_A 235 TKELFDWVLKQPCFEKTSFMLF 256 (354)
T ss_dssp HHHHHHHHHTCGGGSSCEEEEE
T ss_pred HHHHHHHHHhccccCCCeEEEE
Confidence 6678887764 3578898887
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.76 E-value=0.0057 Score=55.38 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3478999999999999999999843
No 255
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.72 E-value=0.0052 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999853
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.72 E-value=0.0056 Score=53.07 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
...|+++|.+|+||||+++.|.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998643
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.62 E-value=0.0058 Score=53.46 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...|+++|.+|+|||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
No 258
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.53 E-value=0.0077 Score=54.54 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999853
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.53 E-value=0.0068 Score=55.14 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.2
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
-.++++|.+|+|||||++.|+|-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999985
No 260
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.52 E-value=0.0066 Score=55.64 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 261
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.52 E-value=0.0066 Score=51.79 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~ 259 (358)
.-.++++|.+|+|||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4478999999999999999644
No 262
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.51 E-value=0.0069 Score=52.80 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.+|+||||+++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 263
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.50 E-value=0.0079 Score=55.36 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999853
No 264
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.46 E-value=0.0071 Score=56.23 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3478999999999999999999843
No 265
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.46 E-value=0.0073 Score=55.77 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-.++++|.+|+|||||++.|+|-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 347899999999999999999984
No 266
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.45 E-value=0.0084 Score=54.05 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~ 259 (358)
...|+++|.+|+|||||++.|+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999999
No 267
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.45 E-value=0.0076 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.670 Sum_probs=21.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...|+++|.+|+||||+.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999753
No 268
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.44 E-value=0.0084 Score=54.43 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-.++++|.+|+|||||++.|+|-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 447899999999999999999974
No 269
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.43 E-value=0.0066 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.6
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
..|+++|.+|+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999863
No 270
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.42 E-value=0.0076 Score=54.99 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999853
No 271
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.41 E-value=0.007 Score=54.14 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.3
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
-.++++|.+|+|||||++.|+|-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999853
No 272
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.40 E-value=0.0078 Score=54.20 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-.++++|.+|+|||||++.|+|-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999985
No 273
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.40 E-value=0.0071 Score=51.96 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.++++|.+|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999985
No 274
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.40 E-value=0.0079 Score=54.56 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 275
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.39 E-value=0.0083 Score=51.00 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|.-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3479999999999999999998754
No 276
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.37 E-value=0.0092 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3478999999999999999999853
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.37 E-value=0.0087 Score=49.85 Aligned_cols=20 Identities=40% Similarity=0.795 Sum_probs=18.7
Q ss_pred cEEEEecCCCCCHHHHHHHH
Q psy15712 239 RTIIICGFPNVGKSSFLNKI 258 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L 258 (358)
+.|+++|.||+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 278
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.36 E-value=0.0084 Score=54.72 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-.++++|.+|+|||||++.|+|-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999995
No 279
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.36 E-value=0.031 Score=53.05 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+++|.+|+|||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
No 280
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.33 E-value=0.0084 Score=54.84 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 281
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.33 E-value=0.0098 Score=54.63 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999853
No 282
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.31 E-value=0.01 Score=54.60 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-.++++|.+|+|||||++.|+|-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347899999999999999999985
No 283
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.30 E-value=0.0089 Score=55.02 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.-.++++|.+|+|||||++.|.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 45899999999999999999986
No 284
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.30 E-value=0.017 Score=50.39 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+++|.+|+||||+++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 285
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.29 E-value=0.0085 Score=51.84 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.+.++++|.+|+|||||+++|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 458999999999999999999863
No 286
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.29 E-value=0.01 Score=54.70 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-.++++|.+|+|||||++.|+|-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999995
No 287
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.27 E-value=0.01 Score=50.16 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.+|+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 288
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.26 E-value=0.011 Score=54.82 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999853
No 289
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.25 E-value=0.0091 Score=55.56 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 290
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.23 E-value=0.011 Score=54.48 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 291
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.23 E-value=0.0092 Score=56.35 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.-.++|+|.+|+|||||++.|.|
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 45899999999999999999985
No 292
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.20 E-value=0.01 Score=51.72 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
....|+++|.+|+||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999763
No 293
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.19 E-value=0.0097 Score=54.50 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.5
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
-.++++|.+|+|||||++.|+|-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999853
No 294
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.18 E-value=0.0081 Score=52.57 Aligned_cols=22 Identities=27% Similarity=0.659 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.++++|.+|+|||||++.|++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999863
No 295
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.17 E-value=0.01 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.+|+||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 296
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.17 E-value=0.015 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=20.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
....|+|+|.+|+|||||.+.|.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999875
No 297
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.16 E-value=0.0075 Score=53.76 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=16.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHh-CC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT-RA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~-~~ 261 (358)
...++++|.+|+|||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4578999999999999999999 64
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.13 E-value=0.0071 Score=53.80 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=21.2
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
-.++++|.+|+|||||++.|+|-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999986
No 299
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.13 E-value=0.011 Score=49.36 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.4
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|+++|.+|+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 300
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.12 E-value=0.012 Score=49.64 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=20.1
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|+++|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 301
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.11 E-value=0.011 Score=55.97 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+|+|.+|+|||||++.|.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 456899999999999999999986
No 302
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.03 E-value=0.018 Score=49.06 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...++++|.+|+|||||++.+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999875
No 303
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.98 E-value=0.42 Score=42.54 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...+++.|.||+|||++..++.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999975
No 304
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.97 E-value=0.015 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.||+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 305
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.91 E-value=0.015 Score=49.18 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.1
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|+++|.||+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 306
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.89 E-value=0.014 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.+|+||||+.+.|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
No 307
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.89 E-value=0.013 Score=53.94 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 308
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.87 E-value=0.012 Score=51.59 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.-.++++|.+|+|||||++.|++
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 309
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.86 E-value=0.013 Score=51.54 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.3
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|+++|.+|+||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999975
No 310
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.85 E-value=0.018 Score=52.30 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=21.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
....|+|+|.+|+||||+.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 311
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.84 E-value=0.0064 Score=52.43 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=20.7
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
..++++|.+|+|||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999873
No 312
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.83 E-value=0.01 Score=56.02 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-.++++|.+|+|||||++.|+|-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 447899999999999999999974
No 313
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.83 E-value=0.018 Score=50.27 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
....|+++|.+|+||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999875
No 314
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.83 E-value=0.016 Score=54.16 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-.++++|.+|+|||||++.|+|-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 447899999999999999999985
No 315
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.83 E-value=0.013 Score=50.81 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.1
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|+++|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999976
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.77 E-value=0.016 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=20.3
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|+++|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 317
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.76 E-value=0.016 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=21.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.+|+|||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 318
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.74 E-value=0.016 Score=49.22 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=19.7
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|++.|.||+||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 319
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.70 E-value=0.018 Score=48.93 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=19.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|++.|.||+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 320
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.68 E-value=0.022 Score=48.70 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=21.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+++|.+|+||||+.+.|.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 321
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.67 E-value=0.019 Score=55.62 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3478999999999999999999843
No 322
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.66 E-value=0.018 Score=49.52 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.4
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|+++|.+|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999975
No 323
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.58 E-value=0.02 Score=48.75 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.+|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999963
No 324
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.58 E-value=0.04 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+++|.||+||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999974
No 325
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.55 E-value=0.026 Score=48.97 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|++.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999974
No 326
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.54 E-value=0.067 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
....|+++|.||+||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999753
No 327
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.53 E-value=0.018 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~ 259 (358)
.-.++++|.+|+|||||++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4478999999999999999887
No 328
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.53 E-value=0.018 Score=55.43 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...++++|.+|+|||||+|.|.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 347999999999999999999974
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.53 E-value=0.023 Score=48.77 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
....|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998754
No 330
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.46 E-value=0.017 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.709 Sum_probs=21.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
..++++|.+|+|||||++.|.+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999974
No 331
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.45 E-value=0.045 Score=45.74 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=20.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...++++|.+|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998753
No 332
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.43 E-value=0.021 Score=48.61 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.||+||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999973
No 333
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.40 E-value=0.023 Score=47.55 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=34.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCc-------ccCCCcceeeeEEEEEEecCceEEEEeCCCCCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRADVD-------VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~~~-------v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~~ 298 (358)
...++++|.+|+|||||++.+.+.-.. +........ .......+.++|=|+.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------DAAFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------GGGGGCSEEEEESTTCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------HHHhCCCEEEEeCccccCh
Confidence 457899999999999999999863211 110000000 0012347889999998653
No 334
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.40 E-value=0.02 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+|+|.+|+|||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 335
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.36 E-value=0.026 Score=48.54 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=22.7
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.....|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999864
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.35 E-value=0.026 Score=48.25 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.||+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999863
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.35 E-value=0.024 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|++.|.||+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 338
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.30 E-value=0.021 Score=55.25 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...++++|.+|+|||||++.|.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999986
No 339
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.29 E-value=0.016 Score=54.65 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.+.++++|..|+|||||+|.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 468899999999999999999964
No 340
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.29 E-value=0.022 Score=54.82 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.2
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..++++|.+|+|||||+++|++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999975
No 341
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.27 E-value=0.023 Score=54.79 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 342
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.26 E-value=0.026 Score=54.42 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3478999999999999999999853
No 343
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.25 E-value=0.18 Score=46.21 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
....+++.|.||+||||+.+++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999999863
No 344
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.23 E-value=0.029 Score=48.74 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
No 345
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.20 E-value=0.027 Score=48.49 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.+.++++|.+|+|||||+++|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999874
No 346
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.18 E-value=0.028 Score=54.21 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3478999999999999999999853
No 347
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.16 E-value=0.028 Score=47.74 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~ 259 (358)
...|+++|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4578999999999999999997
No 348
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.15 E-value=0.023 Score=50.75 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
....|+++|.+|+||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999874
No 349
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.15 E-value=0.031 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...|++.|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 350
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.14 E-value=0.16 Score=48.02 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.1
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
+.+++.|.+|+|||||++.+.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999985
No 351
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.13 E-value=0.029 Score=54.18 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3478999999999999999999853
No 352
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.12 E-value=0.028 Score=51.25 Aligned_cols=23 Identities=39% Similarity=0.765 Sum_probs=20.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.||+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999874
No 353
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.10 E-value=0.029 Score=47.77 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.||+||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 354
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.08 E-value=0.026 Score=54.71 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
-.++++|.+|+|||||++.|+|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 468999999999999999999853
No 355
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.03 E-value=0.031 Score=54.37 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3478999999999999999999843
No 356
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.02 E-value=0.03 Score=49.41 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+++|.||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999863
No 357
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.02 E-value=0.03 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.||+||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999973
No 358
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.01 E-value=0.043 Score=49.74 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+++|.||+||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.94 E-value=0.037 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.||+||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999864
No 360
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.94 E-value=0.033 Score=53.99 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3478999999999999999999853
No 361
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.93 E-value=0.055 Score=49.88 Aligned_cols=21 Identities=19% Similarity=0.547 Sum_probs=19.7
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q psy15712 241 IIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~ 261 (358)
++++|.||+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999873
No 362
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.92 E-value=0.02 Score=54.92 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...++|+|.+|+|||||++.|+|.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 363
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.44 Score=47.03 Aligned_cols=23 Identities=17% Similarity=0.496 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..-|++.|+||+|||+|..++.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34799999999999999999986
No 364
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.91 E-value=0.18 Score=45.77 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...+++.|.||+|||+|.+++.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999763
No 365
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.89 E-value=0.031 Score=47.47 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.+|+||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999976
No 366
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.88 E-value=0.044 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+++|.+|+||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999873
No 367
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.88 E-value=0.27 Score=46.15 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...|++.|.||+|||+|..++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 457999999999999999999863
No 368
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.84 E-value=0.015 Score=50.62 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|+|+|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 369
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.82 E-value=0.036 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.||+||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 370
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.79 E-value=0.029 Score=56.62 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.8
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
..++++|.+|+|||||+|+|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999999974
No 371
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.76 E-value=0.037 Score=47.43 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|+++|.||+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 372
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.74 E-value=0.035 Score=48.50 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=18.6
Q ss_pred EEEEecCCCCCHHHHHHHHh
Q psy15712 240 TIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~ 259 (358)
+|++.|.||+||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999995
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.61 E-value=0.04 Score=46.88 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.2
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 374
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.61 E-value=0.035 Score=54.67 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.-.++++|.+|+|||||+++|++
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 44799999999999999999986
No 375
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.59 E-value=0.027 Score=54.08 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3478999999999999999999853
No 376
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.59 E-value=0.027 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=16.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|++.|.||+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 377
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.58 E-value=0.041 Score=45.89 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.2
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 378
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.55 E-value=0.042 Score=53.55 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-.++++|.+|+|||||++.|+|-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 347899999999999999999984
No 379
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.52 E-value=0.037 Score=47.10 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=19.4
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
+.|+++|.||+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998863
No 380
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.52 E-value=0.042 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.8
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|+++|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 381
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.52 E-value=0.039 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=19.6
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...+|+|.+|+|||||+.+|..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999863
No 382
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.51 E-value=0.041 Score=48.15 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=19.0
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|+++|.||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 383
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.50 E-value=0.038 Score=46.73 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=19.0
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|+++|.||+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999863
No 384
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.48 E-value=0.4 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..-|++.|+||+|||+|..++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999986
No 385
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.46 E-value=0.041 Score=48.23 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.+|+||||+.+.|.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 386
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.42 E-value=0.049 Score=47.74 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 387
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.40 E-value=0.037 Score=48.36 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.-.++++|.+|+|||||++.|++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999999999983
No 388
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.37 E-value=0.025 Score=54.45 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 389
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.37 E-value=0.069 Score=44.61 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...+++.|.+|+|||+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998875
No 390
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.37 E-value=0.035 Score=49.98 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=19.6
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q psy15712 241 IIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~ 261 (358)
++++|.||+|||||++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 391
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.35 E-value=0.071 Score=47.54 Aligned_cols=39 Identities=26% Similarity=0.528 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 218 LEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 218 l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..++..++..++..|. ...+++.|.||+||||+..+|..
T Consensus 42 ~~f~~~l~~~~~~iPk----kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 42 ITFLGALKSFLKGTPK----KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHHTCTT----CSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc----ccEEEEECCCCCCHHHHHHHHHH
Confidence 3455566666654442 33699999999999988877763
No 392
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.27 E-value=0.048 Score=46.60 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.2
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 393
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.037 Score=55.13 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...++|+|.+|+|||||++.|+|-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 458999999999999999999863
No 394
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.26 E-value=0.045 Score=45.83 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.6
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 395
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.26 E-value=0.045 Score=50.50 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.-.++++|.||+|||||++.|++
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 34789999999999999999874
No 396
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.21 E-value=0.054 Score=55.02 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=24.9
Q ss_pred cCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 230 RLPSIDPFTRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 230 ~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
++|... ..-.++++|.+|+|||||++.|+|..
T Consensus 18 ~l~~~~-~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 18 GLPTPK-NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCCCC-TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCC-CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344433 33478999999999999999999853
No 397
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.20 E-value=0.05 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
..-.++++|.+|+|||||++.|+|..
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999853
No 398
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.11 E-value=0.051 Score=47.64 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=19.1
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|++.|.||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 399
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.05 E-value=0.052 Score=55.48 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.++++|.+|+|||||++.|+|-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6799999999999999999984
No 400
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.02 E-value=0.045 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|+++|.||+|||||.+.|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999974
No 401
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.01 E-value=0.046 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|+++|.+|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 402
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.00 E-value=0.055 Score=46.99 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=20.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.-.++++|.||+|||||+..|++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999999975
No 403
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.98 E-value=0.82 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.548 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..-|++.|.||+|||+|..++.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHH
Confidence 34699999999999999999986
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.97 E-value=0.074 Score=49.13 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHh
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
+....|+|+|.+|+||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999986
No 405
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.96 E-value=0.8 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..-|++.|.||+|||+|..++.+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHh
Confidence 44799999999999999999986
No 406
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.95 E-value=0.06 Score=48.50 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|++.|.||+||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999964
No 407
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.92 E-value=0.048 Score=48.04 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|+++|.||+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999964
No 408
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.91 E-value=0.055 Score=55.28 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.8
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
-.++++|.+|+|||||++.|+|-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36799999999999999999974
No 409
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.76 E-value=0.052 Score=52.23 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~ 259 (358)
....+|+|.+|+|||||+++|+
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999999987
No 410
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.69 E-value=0.064 Score=55.30 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
..-.++++|.+|+|||||++.|+|..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34578999999999999999999854
No 411
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.68 E-value=0.064 Score=47.51 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|++.|.||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 412
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.66 E-value=0.051 Score=54.50 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=20.3
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
-.++++|.+|+|||||++.|+|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999985
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.64 E-value=0.074 Score=47.34 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+++|.||+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999964
No 414
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.63 E-value=0.053 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-+++++|.+|+|||||++.|++.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 448999999999999999999974
No 415
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.61 E-value=0.051 Score=49.71 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=19.6
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q psy15712 241 IIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 241 I~lvG~~nvGKSSLin~L~~~ 261 (358)
++++|.||+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999864
No 416
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.56 E-value=0.049 Score=55.80 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.++++|.+|+|||||++.|+|-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5689999999999999999984
No 417
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.55 E-value=0.063 Score=52.07 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...++++|.+|+|||||++.|.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999985
No 418
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.48 E-value=0.053 Score=51.24 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.4
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
..++++|.||+|||||++.+++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999863
No 419
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.47 E-value=0.072 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.8
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
-.|++.|.+|+||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999864
No 420
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.44 E-value=0.071 Score=54.96 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
..-.++++|.+|+|||||++.|+|..
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 44578999999999999999999853
No 421
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.41 E-value=0.17 Score=43.56 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..+++.|.||+|||+|+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 422
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.40 E-value=0.27 Score=48.50 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..-|++.|+||+|||+|..++.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 423
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.40 E-value=0.061 Score=47.50 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.-.++++|.||+|||||+..|++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 44789999999999999999987
No 424
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.38 E-value=0.056 Score=55.46 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.8
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
-.++++|.+|+|||||++.|+|-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 36799999999999999999984
No 425
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.37 E-value=0.072 Score=44.44 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~ 259 (358)
....+|+|.+|+||||++.+|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999985
No 426
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.37 E-value=0.76 Score=42.83 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.5
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
....+++.|.||+|||+|..++.+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999753
No 427
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.32 E-value=0.085 Score=47.21 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|++.|.+|+||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999974
No 428
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.28 E-value=0.067 Score=54.30 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|-.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 429
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.24 E-value=0.052 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.6
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
-.++++|.+|+|||||++.|.|-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 36799999999999999999874
No 430
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.10 E-value=0.094 Score=45.80 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=20.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...+++.|.||+|||||+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 431
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.10 E-value=0.074 Score=53.94 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999854
No 432
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.07 E-value=0.064 Score=54.95 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.++++|.+|+|||||++.|.|-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999874
No 433
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.01 E-value=0.39 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|++.|.||+|||+|..++..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.96 E-value=0.089 Score=46.89 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=21.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+++|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 435
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.96 E-value=1.4 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=20.1
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.-|++.|+||+|||+|..++.+
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHH
Confidence 4589999999999999999986
No 436
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.91 E-value=0.095 Score=47.26 Aligned_cols=24 Identities=33% Similarity=0.221 Sum_probs=20.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 437
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.86 E-value=0.094 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=20.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~ 259 (358)
...|++.|.+|+||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 438
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.84 E-value=0.094 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.0
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHh
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
.+..+|+++|.+++||||++..+.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 356799999999999999999874
No 439
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.79 E-value=0.12 Score=48.47 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=19.3
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.++++|.+|+||||+++.|.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999876
No 440
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.78 E-value=0.092 Score=48.32 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=20.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|+++|.||+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 441
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.77 E-value=0.085 Score=54.38 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.-.++++|.+|+|||||++.|+|..
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999854
No 442
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.76 E-value=0.26 Score=43.12 Aligned_cols=35 Identities=14% Similarity=-0.047 Sum_probs=22.7
Q ss_pred CceEEEEeCCCC-CCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCC
Q psy15712 284 YLRWQVIDTPGI-LDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISE 329 (358)
Q Consensus 284 ~~~~~liDTPG~-~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~ 329 (358)
...+.++||||. .... +..++... |.+++++.++.
T Consensus 67 ~yD~viiD~p~~~~~~~----------~~~~l~~a-D~viiv~~~~~ 102 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDED----------LEALADGC-DLLVIPSTPDA 102 (209)
T ss_dssp GCSEEEEEEECCCSSSH----------HHHHHHTS-SEEEEEECSSH
T ss_pred cCCEEEEeCCCCcCcHH----------HHHHHHHC-CEEEEEecCCc
Confidence 457899999997 4321 22334444 88888887654
No 443
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.75 E-value=0.097 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=19.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..++++|.||+|||||.+++.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 444
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.72 E-value=0.11 Score=46.39 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|.++|.||+||||....|+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345788899999999999998874
No 445
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.69 E-value=0.38 Score=46.22 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
....++|.|.||+|||+|..++...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999753
No 446
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.61 E-value=0.098 Score=45.67 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
....|+++|.+|+||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998753
No 447
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.60 E-value=0.19 Score=42.93 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=19.1
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.+++.|.+|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998875
No 448
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.58 E-value=0.081 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.6
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.-+++++|.+|+|||||++.|++.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 447999999999999999999974
No 449
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.50 E-value=0.21 Score=43.06 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.6
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..+++.|.+|+|||||+..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 450
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.41 E-value=0.12 Score=44.52 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=19.5
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|++.|.+|+||||+.+.|.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 451
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.36 E-value=0.099 Score=53.89 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRAD 262 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~ 262 (358)
.++++|.+|+|||||++.|+|-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999854
No 452
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.22 E-value=0.12 Score=45.68 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=19.0
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.|+++|.||+||+|....|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999874
No 453
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.11 E-value=0.12 Score=51.34 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|+++|.||+||||+.++|..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999975
No 454
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.06 E-value=0.083 Score=47.90 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
+...|++.|.+|+||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998753
No 455
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.95 E-value=0.11 Score=47.63 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=20.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..-.++++|.+|+|||||+..+++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998874
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.86 E-value=0.14 Score=45.68 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...|++.|.+|+||||+.+.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999974
No 457
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.81 E-value=0.095 Score=43.09 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...|.+.|.||+|||++...+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999754
No 458
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.76 E-value=0.11 Score=47.80 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.3
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....+++.|.||+|||++..++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999987764
No 459
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.70 E-value=0.16 Score=47.64 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....+++.|.+|+|||||++.+.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999986
No 460
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.69 E-value=0.085 Score=59.20 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
+|++||.+|+|||||++.|.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 679999999999999999986
No 461
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.62 E-value=0.13 Score=44.98 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.9
Q ss_pred CCcEEEEecCCCCCHHHHHHHHh
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
.....+|+|.+|+||||++.+|.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 34577899999999999999985
No 462
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.37 E-value=0.18 Score=48.15 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.+.|+|+|.||+|||||...|...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 463
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.36 E-value=0.086 Score=53.71 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
....|+++|.+|+|||||.+.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3468999999999999999999853
No 464
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.31 E-value=0.09 Score=48.92 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=18.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
+.+.|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 465
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.24 E-value=0.31 Score=44.70 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..++++|.||+|||++...|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999875
No 466
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.17 E-value=0.16 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...+++.|.||+|||++.+.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346899999999999999999753
No 467
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.14 E-value=2.1 Score=39.05 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=17.3
Q ss_pred CCcEEEEecC-CCCCHHHHHHHHh
Q psy15712 237 FTRTIIICGF-PNVGKSSFLNKIT 259 (358)
Q Consensus 237 ~~~~I~lvG~-~nvGKSSLin~L~ 259 (358)
...+|++.|. +|+||||+.-.|.
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA 104 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLA 104 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCcHHHHHHHHH
Confidence 3457888764 8999999977664
No 468
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.06 E-value=0.029 Score=50.58 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=18.8
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q psy15712 240 TIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~ 260 (358)
.++|+|.+|+|||||+++|++
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999985
No 469
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.01 E-value=0.27 Score=45.59 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..++|.|.+|+|||||++.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999874
No 470
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.99 E-value=0.19 Score=44.51 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
....|+++|.||+|||||...|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999854
No 471
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.94 E-value=0.15 Score=55.27 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRADV 263 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~~~ 263 (358)
.++++|.+|+|||||++.|++..+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 569999999999999999996543
No 472
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.81 E-value=0.2 Score=47.51 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|+++|.||+|||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 473
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.75 E-value=0.1 Score=56.69 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.++++|.+|+|||||++.|+|.
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999985
No 474
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.74 E-value=0.21 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.119 Sum_probs=19.2
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..+++.|.||+|||+|..++..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4677789999999999999975
No 475
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.70 E-value=0.18 Score=44.40 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=18.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHh
Q psy15712 238 TRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~ 259 (358)
.-.++++|.||+|||||...++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999977664
No 476
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.56 E-value=0.19 Score=46.58 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...+++.|.||+|||+|.+++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 347899999999999999999863
No 477
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=89.52 E-value=0.064 Score=51.88 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=18.7
Q ss_pred EEEEecCCCCCHHHHHHHHh
Q psy15712 240 TIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~ 259 (358)
.++++|.+|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999998884
No 478
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.51 E-value=0.19 Score=56.45 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
++++||.+|+|||||++.|.|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 6799999999999999999974
No 479
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.50 E-value=0.58 Score=44.49 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...|++.|.||+|||+|..++...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999999863
No 480
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.34 E-value=0.22 Score=47.17 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
.+.|+|+|.||+|||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 357899999999999999999754
No 481
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=89.21 E-value=0.19 Score=47.57 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=20.3
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHh
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKIT 259 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~ 259 (358)
......+++|.+|+||||++.+++
T Consensus 21 f~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHH
Confidence 345577899999999999999974
No 482
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.19 E-value=0.74 Score=42.39 Aligned_cols=76 Identities=11% Similarity=-0.041 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhccCCCCCCCCcEEEEecCCCCCHHHHHHHHhCCCCcccCCCcceeeeEEEEEEecCceEEEEeCCCCCC
Q psy15712 218 LEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILD 297 (358)
Q Consensus 218 l~~l~~~~~~l~~l~~~~~~~~~I~lvG~~nvGKSSLin~L~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTPG~~~ 297 (358)
..++..+...+.+.+ +..-.|++.|.||+|||+|.++|...-...+...+..... ......+..+.++|-++..+
T Consensus 87 ~~~~~~l~~~l~~~~---~~~n~~~l~GppgtGKt~~a~ala~~~~l~G~vn~~~~~f--~l~~~~~k~i~l~Ee~~~~~ 161 (267)
T 1u0j_A 87 QYAASVFLGWATKKF---GKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENF--PFNDCVDKMVIWWEEGKMTA 161 (267)
T ss_dssp HHHHHHHHHHHTTCS---TTCCEEEEECSTTSSHHHHHHHHHHHSSCEEECCTTCSSC--TTGGGSSCSEEEECSCCEET
T ss_pred HHHHHHHHHHHhCCC---CCCcEEEEECCCCCCHHHHHHHHHhhhcccceeecccccc--ccccccccEEEEeccccchh
Confidence 344455566665421 2234799999999999999999986321111111111100 00012345677888888765
Q ss_pred C
Q psy15712 298 H 298 (358)
Q Consensus 298 ~ 298 (358)
.
T Consensus 162 d 162 (267)
T 1u0j_A 162 K 162 (267)
T ss_dssp T
T ss_pred H
Confidence 4
No 483
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.14 E-value=0.19 Score=56.29 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q psy15712 240 TIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 240 ~I~lvG~~nvGKSSLin~L~~~ 261 (358)
++++||.+|+|||||++.|.|-
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999874
No 484
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.13 E-value=0.42 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...+.+.|.||+|||+|..++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 485
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.11 E-value=0.23 Score=50.05 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=21.1
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 236 PFTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 236 ~~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.....|+++|.||+||||+.+.|..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999999999863
No 486
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.00 E-value=0.28 Score=46.02 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=21.0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....+++.|.||+||||+++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.00 E-value=0.21 Score=47.65 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
+.|+|+|.+|+|||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999999999875
No 488
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=88.97 E-value=1.8 Score=39.93 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=29.7
Q ss_pred ceEEEEeCCCCCCCCcchHHHHHHHHHHHHhhcccEEEEEEeCCCCCCCCHHHHHHHHHH
Q psy15712 285 LRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKS 344 (358)
Q Consensus 285 ~~~~liDTPG~~~~~~~~~~~ie~~~~~~l~~~~d~iL~VvD~s~~~~~~~~~q~~ll~~ 344 (358)
..+.|||||+.+... + + ..+...+|.+++|+.............++.+..
T Consensus 202 yD~VIIDtpp~~~~~--d-------a-~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~ 251 (286)
T 3la6_A 202 YDLVLIDTPPILAVT--D-------A-AIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQ 251 (286)
T ss_dssp CSEEEEECCCTTTCT--H-------H-HHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcchH--H-------H-HHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHh
Confidence 368999999986432 1 1 133444599999998766443333333344443
No 489
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.93 E-value=0.31 Score=45.08 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.5
Q ss_pred cEEEEecCCCCCHHHHHHHHhCC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
..++|.|.+|+|||||++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 490
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.91 E-value=0.27 Score=46.42 Aligned_cols=23 Identities=17% Similarity=0.418 Sum_probs=20.4
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.+.|+|+|.||+|||||...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 45789999999999999999974
No 491
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.89 E-value=0.19 Score=48.03 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=21.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...+.++|.+|+|||||++.|++.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999864
No 492
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.82 E-value=0.49 Score=46.54 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITRA 261 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~~ 261 (358)
...|++.|.||+|||+|..++.+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 493
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.77 E-value=0.23 Score=43.29 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhC
Q psy15712 239 RTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 239 ~~I~lvG~~nvGKSSLin~L~~ 260 (358)
..|+++|.+|+||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 494
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.71 E-value=0.28 Score=43.91 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHhC
Q psy15712 237 FTRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 237 ~~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....|++.|.+|+||||+++.|..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
No 495
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.60 E-value=0.2 Score=46.61 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...+++.|.||+|||||++++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999999875
No 496
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=88.55 E-value=0.25 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
.+.|+++|.+|+||||+...|.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999988864
No 497
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.53 E-value=0.32 Score=45.87 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...+++.|.||+|||||++.+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999975
No 498
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.52 E-value=0.38 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.2
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...++++|.||+|||++...|..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999874
No 499
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=88.42 E-value=0.24 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
....+|+|.+|+|||||++++++
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999974
No 500
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.35 E-value=0.27 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=20.1
Q ss_pred CcEEEEecCCCCCHHHHHHHHhC
Q psy15712 238 TRTIIICGFPNVGKSSFLNKITR 260 (358)
Q Consensus 238 ~~~I~lvG~~nvGKSSLin~L~~ 260 (358)
...+++.|.||+|||++..++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999874
Done!