RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15712
(358 letters)
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 394 bits (1014), Expect = e-137
Identities = 82/279 (29%), Positives = 154/279 (55%)
Query: 74 YNFKKIAVVPTAKEFVDIMLSKTQRKTPTVIHKQYKISRIRSFYMRKIKYTQSNFHERLS 133
F+++ V TA E +D + ++ + + K+ + R +++ + + L
Sbjct: 3 NPFERMPTVLTADELIDKAFRRAEKAASSFKPRGNKVKKARLREELRVRTVSNVVRDNLR 62
Query: 134 QIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSL 193
++++ P L + FY +L+++L D+D + + ++ A +I + + Y+ ++Y++
Sbjct: 63 KVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDP 122
Query: 194 YRCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSS 253
+L++ GR+A++++ L YL + R+ L LP +D T++I G PNVGKS+
Sbjct: 123 NEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKST 182
Query: 254 FLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTA 313
L +T A ++ Y FTT+ + VG + Y R+Q+IDTPG+LD + +RN IE QA+ A
Sbjct: 183 LLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA 242
Query: 314 LAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNK 352
L +L ++Y D SE CG ++EQI LF+ + F +
Sbjct: 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDL 281
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 220 bits (563), Expect = 3e-71
Identities = 75/130 (57%), Positives = 102/130 (78%)
Query: 223 QVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY 282
+ + LPSI+P +TII+ G PNVGKSSF+N ++RA+VDVQ Y+FTTK+LYVGH D+
Sbjct: 14 RENLYFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH 73
Query: 283 KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLF 342
K ++Q+IDTPG+LD + E+RN IEM +TALAH+ +L+ IDISEQCG +I+EQI LF
Sbjct: 74 KLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLF 133
Query: 343 KSIRPLFNNK 352
SI+ +F+NK
Sbjct: 134 YSIKSVFSNK 143
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 56.1 bits (135), Expect = 4e-09
Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 3/133 (2%)
Query: 222 EQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHT 280
++ + L L D + TI++ G VGKSS +N I V + P+ +
Sbjct: 23 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82
Query: 281 DYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIG 340
+IDTPG+++ + + + L +LY +
Sbjct: 83 SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDA--YRVDNLDKL 140
Query: 341 LFKSIRPLFNNKV 353
+ K+I F +
Sbjct: 141 VAKAITDSFGKGI 153
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 55.6 bits (134), Expect = 5e-09
Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Query: 222 EQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHT 280
E++ + +L D + T+++ G VGKSS +N + V V P+ +
Sbjct: 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 281 DYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQ 330
+IDTPG+++ + +E+ + +LY +
Sbjct: 80 TMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 9e-09
Identities = 42/245 (17%), Positives = 82/245 (33%), Gaps = 56/245 (22%)
Query: 45 EYKY-DVIPEFMEGVNIADYIDPDIFKMPMYNFKK-----IAVVPTAKE----FVDIMLS 94
+Y+Y D++ F + + ++ D+ MP K I + A +LS
Sbjct: 15 QYQYKDILSVFEDAF-VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 95 K----TQRKTPTVIHKQYK--ISRIRSFY----MRKIKYTQSNFHERLSQIIQEFPKLD- 143
K Q+ V+ YK +S I++ M Y + +RL Q F K +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQVFAKYNV 131
Query: 144 NIHPFYADLMNILY-DKDHYKLGLGQLNQARH---------LIDNVAKDYLRLMKYADSL 193
+ Y L L + + + + +V Y K +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLI-------DGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 194 Y-----RC-------KQLKK--AALGRMATIMKRQASNLEY-LEQVRQHLSRLPSIDPFT 238
+ C + L+K + T +SN++ + ++ L RL P+
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 239 RTIII 243
+++
Sbjct: 245 NCLLV 249
Score = 42.5 bits (99), Expect = 2e-04
Identities = 53/358 (14%), Positives = 109/358 (30%), Gaps = 87/358 (24%)
Query: 17 KRKLERHIEEEMQDDYVLDLKKNYDLPDEYKYDVIPEFMEGVNIADYIDPDIFKMPMYN- 75
+ +++ +EE ++ +Y + L K + M + D +YN
Sbjct: 76 EEMVQKFVEEVLRINY------KF-LMSPIKTEQRQPSMMTRMYIEQRD------RLYND 122
Query: 76 ---FKKIAVVPTAKEFVDI--MLSKTQRKTPTVIH------KQ---------YKISRIRS 115
F K V + ++ + L + + +I K YK+
Sbjct: 123 NQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 116 FYMRKIKYTQSNFHERLSQIIQEF-PKLDNIHPFYADLM-NILYDKDHYKLGLGQLNQAR 173
F + + N E + +++Q+ ++D +D NI + L +L +++
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 174 H-----LI-DNVAKDYLRLMKYADSLYRCKQLKKAALGRMATIMKRQASNLEYL-EQVRQ 226
L+ NV ++ + + CK L + T R ++L
Sbjct: 242 PYENCLLVLLNV-QN-AKAWNAFN--LSCKIL-------LTT---RFKQVTDFLSAATTT 287
Query: 227 HLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVG-------- 278
H+S T P+ KS L + D+ TT +
Sbjct: 288 HISLDHHSMTLT--------PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 279 ---HTDY--KYLRWQVIDTPGILDHSLEDRNIIEMQAV-TALAHLRAAVLYFIDISEQ 330
D ++ I++ SL E + + L+ + I
Sbjct: 340 GLATWDNWKHVNCDKLTT---IIESSLNVLEPAEYRKMFDRLSVFPPSA----HIPTI 390
Score = 42.5 bits (99), Expect = 2e-04
Identities = 49/315 (15%), Positives = 101/315 (32%), Gaps = 97/315 (30%)
Query: 36 LKKNYDLPDEYKYDVIPEFMEGVNIA-DYIDPDIFKMPMYN----FKKIAVVPTA----- 85
++ D +K+ + + + + ++P ++ M++ F A +PT
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSLI 395
Query: 86 -----KEFVDIMLSKTQRKTPTVIHKQYKISRIR--SFYMRKIKYTQSN---FHERLS-- 133
K V ++++K + + ++ KQ K S I S Y+ +K N H +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPSIYLE-LKVKLENEYALHRSIVDH 452
Query: 134 -QIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADS 192
I + F D++ P Y D Y + +G HL
Sbjct: 453 YNIPKTFDS-DDLIPPYLD--QYFY---SH---IG-----HHL----------------- 481
Query: 193 LYRCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKS 252
K T+ + + +LEQ I
Sbjct: 482 -------KNIEHPERMTLFRMVFLDFRFLEQ----------------KIRHDSTAWNASG 518
Query: 253 SFLNKITRADVDVQPY-AFTTKSLYVGHTDYKYLRWQVID-TPGILDHSL--EDRNIIEM 308
S LN + ++ Y + + Y+ L ++D P I ++ + + +++ +
Sbjct: 519 SILNTLQ----QLKFYKPYICDN----DPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 309 QAVTALAHLRAAVLY 323
AL A+
Sbjct: 571 ----ALMAEDEAIFE 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 3e-08
Identities = 54/302 (17%), Positives = 100/302 (33%), Gaps = 92/302 (30%)
Query: 82 VPTA---------KEFVDIMLSKTQRKTP-----TVIHKQYKISRIRSFYMRKI-KYTQS 126
VPTA ++F I+ T+ T + + + +
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL---VGKFLGYVSSLVEPSKVG 78
Query: 127 NFHERLSQIIQEFPK--L--DNIHPFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKD 182
F + L+ + EF L ++IH A L L + D L + + LI K+
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKL---LQEND------TTLVKTKELI----KN 125
Query: 183 YLR--------LMKYADS-LYRCKQLKKAALGRMATIMKRQASNLEYLEQVRQ--HLSRL 231
Y+ K ++S L+R A ++ I Q + +Y E++R
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNA---QLVAIFGGQGNTDDYFEELRDLYQTYH- 181
Query: 232 PSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRW--QV 289
+ + + L+++ R +D + F T+ L + L W
Sbjct: 182 VLVGDLIKFS----------AETLSELIRTTLDAEKV-F-TQGLNI-------LEWLENP 222
Query: 290 IDTPGI--LDH---SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKS 344
+TP L S +I V LAH ++ ++ G + E L
Sbjct: 223 SNTPDKDYLLSIPISC---PLI---GVIQLAH-------YVVTAKLLGFTPGE---LRSY 266
Query: 345 IR 346
++
Sbjct: 267 LK 268
Score = 43.5 bits (102), Expect = 1e-04
Identities = 33/250 (13%), Positives = 66/250 (26%), Gaps = 106/250 (42%)
Query: 108 YKISRIRSFYMRKI-----KYTQSNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHY 162
YK S + + + + + + I+ P IH F
Sbjct: 1636 YK----TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH-FG------------- 1677
Query: 163 KLGLGQLNQARHLIDNVAKDYLRLMKYADSLYRCKQLKKAALGRMATIMKRQASNLEYLE 222
G+ + + + +N Y M + + + +K
Sbjct: 1678 ----GE--KGKRIREN----YSA-MIFETIVDGKLKTEKI-------------------- 1706
Query: 223 QVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNK--ITRADVDVQPYAFTTKSLYVGHT 280
I+ + + L+ T QP A T
Sbjct: 1707 --------FKEINEHSTSYTFRS-EK----GLLSATQFT------QP-ALTLME------ 1740
Query: 281 DYKYLRWQVIDTPGILD-------HSL-EDRNIIEMQAVTALAHLRAAVLYF---IDISE 329
++ + + G++ HSL E ALA L A V+ +++
Sbjct: 1741 ---KAAFEDLKSKGLIPADATFAGHSLGE---------YAALASL-ADVMSIESLVEVVF 1787
Query: 330 QCGHSIQEQI 339
G ++Q +
Sbjct: 1788 YRGMTMQVAV 1797
Score = 40.8 bits (95), Expect = 7e-04
Identities = 66/441 (14%), Positives = 112/441 (25%), Gaps = 194/441 (43%)
Query: 2 EEAALLKKAERER--------GVKRKLERHIEEEMQ---DDYVLDLKKNYDLPDEYKYDV 50
+AL + G Q DDY +L+ Y D+
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGG-------------QGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 51 I------------------PEFMEGVNIADYID-----PDI-------FKMPM------- 73
I F +G+NI ++++ PD P+
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 74 -Y------------NFKK-----------------IAVVPTAKEFVDIMLS--------- 94
Y + IA + + F +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 95 -KTQRKTP--TVIHKQYKISRIRSF----YMRKIK-YTQSNFHERLSQIIQEFPKLDNIH 146
+ P ++ + S + M I TQ E++ + + N H
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ----EQVQDYVNKT----NSH 359
Query: 147 PFYADLMNILYDKDHYKLGLGQLNQARHLIDNVAKDYLRLMKYADSLYR-CKQLKKAALG 205
L ++ L +N A++L+ V+ SLY L+KA
Sbjct: 360 ---------LPAGKQVEISL--VNGAKNLV--VS-------GPPQSLYGLNLTLRKA--- 396
Query: 206 RMATIMKRQASNLEYLEQVRQHLS-RLPSID--------PFTRTIIICGFPNVGKSSFLN 256
K + L+Q R S R PF S L
Sbjct: 397 ------KAPSG----LDQSRIPFSERKLKFSNRFLPVASPF-------------HSHLLV 433
Query: 257 KIT---RADVDVQPYAFTTKSLY--VGHT-DYKYLRWQVIDTPGILDHSLEDRNIIEMQA 310
+ D+ +F K + V T D LR +L S+ I++
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR--------VLSGSI-SERIVDCII 484
Query: 311 V-----TALAHLRAAVLYFID 326
+A + +D
Sbjct: 485 RLPVKWETTTQFKA--THILD 503
Score = 28.5 bits (63), Expect = 4.0
Identities = 29/177 (16%), Positives = 49/177 (27%), Gaps = 48/177 (27%)
Query: 48 YDVIPEFMEGVNIADYIDPDIFKMPMYNFKKIAVVPTAKEFVDIMLSKTQRKTPTVIHKQ 107
Y + N AD Y F + +V T+
Sbjct: 1636 YKTSKAAQDVWNRAD-----NHFKDTYGFSILDIV------------INNPVNLTIHFGG 1678
Query: 108 YKISRIRSFYMRKIKYTQSNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLG 167
K RIR Y + + + ++ I F +++ + + + L
Sbjct: 1679 EKGKRIRENYS-AMIFETIVDGKLKTEKI--FKEIN------EHSTSYTFRSEKGLLSAT 1729
Query: 168 QLNQARHLIDNVAKDYLRLMK----------YAD-SL--YRCKQLKKAALGRMATIM 211
Q Q + A +K +A SL Y AAL +A +M
Sbjct: 1730 QFTQPALTLMEKA--AFEDLKSKGLIPADATFAGHSLGEY-------AALASLADVM 1777
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 50.7 bits (122), Expect = 2e-07
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 241 IIICGFPNVGKSSFLNKIT-RADVDVQPYAFTTKSL-YVGHTDYKYLRWQVIDTPGILDH 298
++I G PN GKS+ +NK+ + V TK + + + +++DTPGIL
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN----GVKILDTPGILYK 157
Query: 299 SLEDRNIIEMQAVT 312
++ ++ +
Sbjct: 158 NIFSEDLAAKLLLV 171
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 48.8 bits (117), Expect = 5e-07
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 23/96 (23%)
Query: 240 TIIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHT----DYKYLRWQVIDTP 293
TII G NVGKS+ + ++T + +P G T + ++ ++ID P
Sbjct: 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRP----------GVTRKIIEIEWKNHKIIDMP 52
Query: 294 GI-----LDHSLEDR--NIIEMQAVTALAHLRAAVL 322
G L +++R + I ++ AVL
Sbjct: 53 GFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVL 88
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 49.6 bits (119), Expect = 5e-07
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 222 EQVRQHLSRLPSIDPFTRTI--IICGFPNVGKSSFLNKIT-RADVDVQPYAFTTKSLYVG 278
E +++ R+ + R I +I G PNVGKS+ +N++ + T S
Sbjct: 102 EILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV 161
Query: 279 HTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVT 312
+++DTPGIL ED + AVT
Sbjct: 162 KVGK---ELELLDTPGILWPKFEDELVGLRLAVT 192
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 46.9 bits (112), Expect = 6e-06
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 243 ICGFPNVGKSSFLNKITRADVDVQPYAFTT 272
+ G PNVGKS+F + T DV++ Y FTT
Sbjct: 5 VVGKPNVGKSTFFSAATLVDVEIANYPFTT 34
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 45.8 bits (108), Expect = 6e-06
Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 8/136 (5%)
Query: 222 EQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFT-TKSLYVGH 279
Q I++ G GKS+ N I V A + TK
Sbjct: 13 NLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS 72
Query: 280 TDYKYLRWQVIDTPGILDHSLEDRNII-EMQAVTALAHLRA-AVLYFIDISEQCGHSIQE 337
+ +K V+DTPGI D + + E+ L A+L + G +E
Sbjct: 73 SSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVV----PLGRYTEE 128
Query: 338 QIGLFKSIRPLFNNKV 353
+ + I +F +
Sbjct: 129 EHKATEKILKMFGERA 144
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 43.9 bits (103), Expect = 4e-05
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 8/129 (6%)
Query: 229 SRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFT-TKSLYVGHTDYKYLR 286
++ II+ G GKS+ N I R + + + T TK+ +
Sbjct: 13 AKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE 72
Query: 287 WQVIDTPGILDHSLEDRNIIEM--QAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKS 344
+IDTP + + + + A +L Q G + +
Sbjct: 73 IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVT----QLGRYTSQDQQAAQR 128
Query: 345 IRPLFNNKV 353
++ +F
Sbjct: 129 VKEIFGEDA 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 43.3 bits (103), Expect = 6e-05
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 245 GFPNVGKSSFLNKITRADVDVQPYAFTT 272
GFP+VGKS+ L+ ++ A + Y FTT
Sbjct: 165 GFPSVGKSTLLSVVSSAKPKIADYHFTT 192
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 43.0 bits (101), Expect = 8e-05
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 14/107 (13%)
Query: 197 KQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLN 256
+ K + + A+ + + ++ + + + + G NVGKS+F+N
Sbjct: 123 RYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG----GKDVYVVGCTNVGKSTFIN 178
Query: 257 KITRADVDVQPYAFTTKSLYVGHTDYKYLRW-------QVIDTPGIL 296
++ + D TT G T L + DTPGI+
Sbjct: 179 RMIKEFSDETENVITTSHFP-GTT--LDLIDIPLDEESSLYDTPGII 222
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 42.9 bits (102), Expect = 1e-04
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 221 LEQVRQHLSRLPSIDPFTRTIIIC--GFPNVGKSSFLNKITRAD-VDVQPYAFTTK-SLY 276
L+ V +H +P I C G PNVGKSS +N + + V V A TT+ ++
Sbjct: 156 LDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVD 215
Query: 277 VGHTDYKYLRWQVIDTPGI 295
Y + ++DT G+
Sbjct: 216 T-SFTYNQQEFVIVDTAGM 233
Score = 38.2 bits (90), Expect = 0.003
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 25/89 (28%)
Query: 240 TIIICGFPNVGKSSFLNKITR---ADVDVQPYAFTTKSLYVGHT-D--YKYLRWQ----- 288
+ I G PNVGKS+ N+I + V+ P G T D Y W
Sbjct: 5 VVAIVGRPNVGKSTIFNRIAGERISIVEDTP----------GVTRDRIYSSAEWLNYDFN 54
Query: 289 VIDTPGIL--DHSLEDRNIIEMQAVTALA 315
+IDT GI D + I QA A+
Sbjct: 55 LIDTGGIDIGDEPFLAQ--IRQQAEIAMD 81
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 42.7 bits (101), Expect = 1e-04
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 241 IIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRW----QV--IDTP 293
I++ G NVGKSSF+N + +V V YA TT YK + V +DTP
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTT-----DPVYKSMELHPIGPVTLVDTP 91
Query: 294 GILD-HSLEDRNIIEMQAVTALAHLRA-AVLYFIDISE 329
G+ D L RA + D +
Sbjct: 92 GLDDVGELGRL----RVEKARRVFYRADCGILVTDSAP 125
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 42.2 bits (99), Expect = 1e-04
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 197 KQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLN 256
+++ + + A+ + +V + ++R + + G NVGKS+F+N
Sbjct: 125 RRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE----GGDVYVVGCTNVGKSTFIN 180
Query: 257 KITRAD------VDVQPYAFTTKSL-YVGHTDYKYLRWQVIDTPGIL 296
+I + + TT + + + DTPGI+
Sbjct: 181 RIIEEATGKGNVITTSYFPGTTLDMIEIPLES----GATLYDTPGII 223
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 42.5 bits (101), Expect = 1e-04
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 245 GFPNVGKSSFLNKITRADVDVQPYAFTT 272
G+PN GKSS L +TRA + PY FTT
Sbjct: 164 GYPNAGKSSLLAAMTRAHPKIAPYPFTT 191
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 40.2 bits (95), Expect = 2e-04
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 240 TIIICGFPNVGKSSFLNKITR---ADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI- 295
++I G PNVGKSS N++ + A V P T+ L G + R+ ++DT G+
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPG--VTRDLKEGVVETDRGRFLLVDTGGLW 60
Query: 296 LDHSLEDRNIIEMQAVTALAHLRAAVLYFI 325
E + I+ + AL A V+ F
Sbjct: 61 SGDKWEKK--IQEKVDRALE--DAEVVLFA 86
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 40.8 bits (96), Expect = 4e-04
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295
+T+ + G PNVGK++ N +T V + T G +Y+ + V+D PGI
Sbjct: 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 40.9 bits (97), Expect = 5e-04
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 218 LEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTK-SL 275
++ LE+ L P I + I+ G PNVGKS+ N I + V P TT+ +
Sbjct: 161 IKKLEEKGLDLESKPEITDAIKVAIV-GRPNVGKSTLFNAILNKERALVSPIPGTTRDPV 219
Query: 276 YVGHTDYKYLRWQVIDTPGI 295
++ +DT G+
Sbjct: 220 DD-EVFIDGRKYVFVDTAGL 238
Score = 37.5 bits (88), Expect = 0.005
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 240 TIIICGFPNVGKSSFLNKITR---ADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGIL 296
T++I G PNVGKS+ NK+ + A V+ + T+ ++ ++++DT G+
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEG--VTRDPVQDTVEWYGKTFKLVDTCGVF 60
Query: 297 ---DHSLEDRNIIEMQAVTALA 315
+ + ++ + +
Sbjct: 61 DNPQDIISQK--MKEVTLNMIR 80
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 40.0 bits (94), Expect = 6e-04
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI-- 295
+ + G PNVGK+S N +T V + T G YK +ID PG
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 296 -LDHSLEDR 303
S++++
Sbjct: 65 LGYSSIDEK 73
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 40.1 bits (93), Expect = 6e-04
Identities = 27/120 (22%), Positives = 42/120 (35%), Gaps = 7/120 (5%)
Query: 238 TRTIIICGFPNVGKSSFLNKITRADV-DVQPYAF-TTKSLYVGHTDYKYLRWQVIDTPGI 295
TR +I+ G GKS+ N I + A T++ G + +V+DTP I
Sbjct: 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDI 80
Query: 296 LD--HSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKV 353
S D E L+ L + Q G + + +R +F V
Sbjct: 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVT---QLGRFTAQDQQAVRQVRDMFGEDV 137
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 40.5 bits (94), Expect = 7e-04
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 13/130 (10%)
Query: 221 LEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKIT---RADVDVQPYAFTTKSLYV 277
+ L + S + + G GKSSF+N + + ++
Sbjct: 55 NSAISDALKEIDSSVL---NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER 111
Query: 278 GHTDY-KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQ 336
+ D PGI + +E + I + + +
Sbjct: 112 HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKM------KFYEYDFFIIISATRFKKNDI 165
Query: 337 EQIGLFKSIR 346
+ ++
Sbjct: 166 DIAKAISMMK 175
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 39.1 bits (92), Expect = 0.002
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 218 LEYLEQVRQHLSRLPSIDPFTR--------TIIICGFPNVGKSSFLNKITRADVD-VQPY 268
+ LE++++ L+ + ++I G PNVGKS+ LN++ D V
Sbjct: 217 VTRLERIKEKLTEE--LKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDI 274
Query: 269 AFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVT-ALAHLRAA--VLYFI 325
TT+ + + + ++++DT G+ + D ++E + L + A VL+ +
Sbjct: 275 PGTTRDVISEEIVIRGILFRIVDTAGVRSET-ND--LVERLGIERTLQEIEKADIVLFVL 331
Query: 326 DISEQCGHSIQEQIGLFKSIRPLF-NNKV 353
D S ++ + K+ R L NKV
Sbjct: 332 DASSPLDEEDRKILERIKNKRYLVVINKV 360
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 37.5 bits (88), Expect = 0.002
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI---L 296
I + G PNVGKS+ N +T +V + + T G +Y +++V+D PG+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64
Query: 297 DHSLE 301
+S++
Sbjct: 65 ANSID 69
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 37.9 bits (89), Expect = 0.002
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295
I + G PNVGKS+ N +T +V + + T G +Y +++V+D PG+
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 37.6 bits (88), Expect = 0.004
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 206 RMATIMKRQASNLEYLEQVRQHL--SRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADV 263
R+ +MK LE ++ ++ S + P +I I G+ N GK+S N +T
Sbjct: 152 RINKLMKE----LESIKIFKEKSIESNKRNNIP---SIGIVGYTNSGKTSLFNSLTGLTQ 204
Query: 264 DVQPYAFTT 272
V FTT
Sbjct: 205 KVDTKLFTT 213
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 37.1 bits (87), Expect = 0.006
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 243 ICGFPNVGKSSFLNKITRADVDVQPYAFTT 272
I G PNVGKS+F N +T + + + F T
Sbjct: 27 IVGLPNVGKSTFFNVLTNSQASAENFPFCT 56
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 36.7 bits (86), Expect = 0.008
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 243 ICGFPNVGKSSFLNKITRADVDVQPYAFTT 272
I G PNVGKS+ N +TRA+ Y F T
Sbjct: 6 IVGLPNVGKSTLFNALTRANALAANYPFAT 35
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 36.8 bits (86), Expect = 0.010
Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 18/142 (12%)
Query: 218 LEYLEQVRQHLSRLPSIDPFTR--------TIIICGFPNVGKSSFLNKITRADVD-VQPY 268
+E +R ++RL ID + + +I G PN GKS+ LN + + V
Sbjct: 207 TMQIETLRSEVNRL--IDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHM 264
Query: 269 AFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVT-ALAHLRAA--VLYFI 325
TT+ + +++ DT G+ + IE + + + + A +LY +
Sbjct: 265 PGTTRDYIEECFIHDKTMFRLTDTAGL--REAGE--EIEHEGIRRSRMKMAEADLILYLL 320
Query: 326 DISEQCGHSIQEQIGLFKSIRP 347
D+ + +I K+ P
Sbjct: 321 DLGTERLDDELTEIRELKAAHP 342
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 36.1 bits (84), Expect = 0.011
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295
++ G PN GK++ N +T A+ V + T G ++ D PG+
Sbjct: 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGV 58
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 35.2 bits (82), Expect = 0.014
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 240 TIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298
++I G PN GKSS LN + + V A TT+ + H + +IDT G+ +
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 65
Query: 299 SLEDRNIIEMQAVT-ALAHLRAA--VLYFIDISE 329
S + +E + A + A VL+ +D +
Sbjct: 66 S----DEVERIGIERAWQEIEQADRVLFMVDGTT 95
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 35.9 bits (84), Expect = 0.016
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 218 LEYLEQVRQHLSRLPSIDPFTR--------TIIICGFPNVGKSSFLNKITRAD 262
+ +E + +S+L + + + I G PNVGKSS LN +++D
Sbjct: 198 ISDIENIAAEISQL--LATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSD 248
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 35.9 bits (82), Expect = 0.017
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 235 DPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY------LRWQ 288
F I+ G +GKS+ ++ + + +P T + + Y L+
Sbjct: 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLT 98
Query: 289 VIDTPGILDH 298
++ T G D
Sbjct: 99 IVSTVGFGDQ 108
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 35.4 bits (82), Expect = 0.019
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295
TI + G PN GK++ N++T + V +A T G + ++D PG
Sbjct: 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGT 60
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 35.1 bits (81), Expect = 0.020
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 13/67 (19%)
Query: 241 IIICGFPNVGKSSFLNKI-------TRADVDVQP------YAFTTKSLYVGHTDYKYLRW 287
I+ G GK++ L I + ++ F L +G R+
Sbjct: 17 IVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRF 76
Query: 288 QVIDTPG 294
+ PG
Sbjct: 77 HLYTVPG 83
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 34.6 bits (80), Expect = 0.037
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 295
I + G PN GK+S N IT + V + T G K ++ D PGI
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV-KKNKDLEIQDLPGI 59
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 34.7 bits (81), Expect = 0.043
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 243 ICGFPNVGKSSFLNKITRADVDVQPYAFTT 272
I G PNVGKS+ N +T+A ++ Y F T
Sbjct: 7 IVGLPNVGKSTLFNALTKAGIEAANYPFCT 36
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 34.0 bits (79), Expect = 0.066
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 243 ICGFPNVGKSSFLNKITRADV 263
I G PNVGKS+F IT++ +
Sbjct: 25 IVGMPNVGKSTFFRAITKSVL 45
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 32.9 bits (75), Expect = 0.13
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 201 KAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITR 260
+AAL R T++ +++ ++ EQ +Q L RL + I G P VGKS+ + +
Sbjct: 44 RAALPRAITLV--ESTRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101
Query: 261 A 261
Sbjct: 102 H 102
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 32.8 bits (76), Expect = 0.15
Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 29/130 (22%)
Query: 244 CGF------PNVGKSSFLNKITRADVD-VQPYAFTT--KSLYVGHTDYKYLRWQVI--DT 292
GF PNVGKS+ LN + V + P TT + + R Q++ DT
Sbjct: 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG----RRQIVFVDT 62
Query: 293 PGILD--HSLEDRNIIEMQAVTALAHLRAA--VLYFIDISEQCG---HSIQEQIGLFKSI 345
PG+ +L + M L V++ +D+ + +
Sbjct: 63 PGLHKPMDALGEF----MDQ-EVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK 117
Query: 346 RPLF--NNKV 353
P+ NK+
Sbjct: 118 VPILLVGNKL 127
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 32.9 bits (75), Expect = 0.17
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 201 KAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITR 260
+A L + T++ ++ + + Q L + T + + G P GKS+FL
Sbjct: 21 RATLAQAMTLV--ESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78
Query: 261 A 261
Sbjct: 79 L 79
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 32.4 bits (75), Expect = 0.20
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Query: 244 CGF------PNVGKSSFLNKITRADVD-VQPYAFTTKSLYVG-HTDYKYLRWQVI--DTP 293
CGF PNVGKS+ LNK+ + A TT+ VG HT+ Y Q I DTP
Sbjct: 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY---QAIYVDTP 64
Query: 294 GILDHSLEDRNIIEMQAVTALAHLRAA--VLYFIDISE 329
G+ H E R I + A + + V++ ++ +
Sbjct: 65 GL--HMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR 100
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 32.0 bits (73), Expect = 0.27
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 201 KAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITR 260
+AAL R T+ ++ ++ VR + + + I G P VGKS+ ++ +
Sbjct: 20 RAALARAITLA--ESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77
Query: 261 A 261
Sbjct: 78 L 78
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 31.7 bits (72), Expect = 0.27
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 239 RTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
+III G N GK+S L +T + + + DY ++D PG
Sbjct: 13 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVV---SQEP--LSAADYDGSGVTLVDFPG 64
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 32.1 bits (74), Expect = 0.28
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 244 CGF------PNVGKSSFLNKITRADVD-VQPYAFTT--KSLYVGHTDYKYLRWQVI--DT 292
G+ PNVGKS+ LN + V + P A TT + L V + + Q+I DT
Sbjct: 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEA---QIIFLDT 66
Query: 293 PGILDHSLEDRNII-EMQAVTALAHLRAA--VLYFIDISEQCG 332
PGI + + +++ A L A +L+ ID +E
Sbjct: 67 PGI--YEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWR 107
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 31.7 bits (71), Expect = 0.32
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 235 DPFTRTIIICGFPNVGKSSFLN-----------KITRADVDVQPYAFTTKSLYVGHTDYK 283
F T+++ G +GKS+ +N I+ A ++ S
Sbjct: 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGV 74
Query: 284 YLRWQVIDTPGILD 297
LR V+DTPG D
Sbjct: 75 KLRLTVVDTPGYGD 88
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 31.2 bits (71), Expect = 0.34
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 239 RTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
+III G N GK+S L +T + + + DY ++D PG
Sbjct: 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVV---SQEP--LSAADYDGSGVTLVDFPG 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 31.4 bits (71), Expect = 0.37
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 167 GQLNQARHLIDNVAKDYLRLMKYADSLYRCKQLKKAALGRMATIMKRQASNLEYLEQVRQ 226
+Q + +DN K D L + ++ + R+ I++ + +Y V
Sbjct: 35 NSRSQIKAALDNAGKIMSLTKTAPDYLVGQQPVEDISSNRIYKILELNGYDPQYAASVFL 94
Query: 227 HLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRA 261
TI + G GK++ I
Sbjct: 95 GW--ATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 30.4 bits (69), Expect = 0.70
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 248 NVGKSSFLNKITR 260
N GKS+ +N +
Sbjct: 39 NAGKSTAINVLCN 51
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 29.9 bits (68), Expect = 0.80
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 248 NVGKSSFLNKITR 260
NVGKSS LN +
Sbjct: 33 NVGKSSLLNALFN 45
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 29.8 bits (68), Expect = 0.88
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 248 NVGKSSFLNKITR 260
NVGKSSF+N +
Sbjct: 33 NVGKSSFINSLIN 45
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 29.9 bits (68), Expect = 1.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 248 NVGKSSFLNKITR 260
N GKSS LN +T
Sbjct: 36 NAGKSSALNTLTN 48
>1xqo_A 8-oxoguanine DNA glycosylase; helix-hairpin-helix, archaea,
P.aerophilum, PA-AGOG native, DNA repair, lyase; 1.03A
{Pyrobaculum aerophilum} SCOP: a.96.1.6 PDB: 1xqp_A*
Length = 256
Score = 29.7 bits (66), Expect = 1.5
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 176 IDNVAKDYLRLMKYADSLYRCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSID 235
+ ++ +D+L+ ++ + L + +K + + NLE L + LS +
Sbjct: 81 VIDLCRDFLKYIETSPFLKIGVEARKKRALKACDYVP----NLEDLGLTLRQLSHIVGAR 136
Query: 236 PFTRTII 242
+T++
Sbjct: 137 REQKTLV 143
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 29.6 bits (65), Expect = 1.7
Identities = 13/86 (15%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 185 RLMKYADSLYRCKQLKKAALGRMATIMKRQ------ASNLEYLEQVRQHLSRLPS-IDPF 237
R ++ + + + + L ++A + + +S LE+ + ++ +
Sbjct: 9 RFIQDLERVAQVRSEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQQG 68
Query: 238 TRTIIICGFPNVGKSSFLNKITRADV 263
+++ G GKS+FLN + ++
Sbjct: 69 VFRLLVLGDMKRGKSTFLNALIGENL 94
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 28.9 bits (65), Expect = 1.9
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 224 VRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRA 261
+ L RL P + + + G P GKS+ N + A
Sbjct: 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 29.0 bits (64), Expect = 2.3
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 237 FTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLY--VGHTDYKYL--------R 286
F T+++ G +GKS+ +N + D+ Y + + V K L
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 66
Query: 287 WQVIDTPGILD 297
++DTPG D
Sbjct: 67 LTIVDTPGFGD 77
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 29.0 bits (64), Expect = 2.5
Identities = 9/50 (18%), Positives = 21/50 (42%)
Query: 216 SNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDV 265
S++ L +R+ L + +++ G P GK+ + + D+
Sbjct: 139 SDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFEEDL 188
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 28.2 bits (62), Expect = 2.9
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQV---IDTPG 294
TR II+ G + GKS + + V +P+ + K + D G
Sbjct: 3 TRMIILNGGSSAGKSGIVRCL--QSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADG 60
Query: 295 ILDHSLEDRNIIEMQAVTALAHLRAAVLYFID 326
+ E R + A +A RA ID
Sbjct: 61 GVSIGPEFRALEGAWAEGVVAMARAGARIIID 92
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 28.1 bits (63), Expect = 3.0
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPY-------AFTTKSLYVGHTDYKYLRWQVIDTP 293
++I G GK++ L ++ + + + + L V D
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFA 64
Query: 294 G 294
G
Sbjct: 65 G 65
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 28.7 bits (64), Expect = 3.1
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 13/98 (13%)
Query: 170 NQARHLIDNV--AKDYLRL----MKYADSLYRC--KQLKKAALGRMATIMKRQASN-LEY 220
+QA+H+ D + YLR + + + + + T Q + +
Sbjct: 53 SQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF 112
Query: 221 LEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKI 258
+ ++ L +P + G PN GKS N +
Sbjct: 113 INALKLWLKGIPK----KNCLAFIGPPNTGKSMLCNSL 146
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 27.4 bits (61), Expect = 3.4
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 132 LSQIIQEFPKLDNIHPFYADLMNILYDKDHYKLGLGQLNQA--RHLIDNVAKDYLR-LMK 188
L+ +++FP + FYA +LY+ Y+ G+ L + D + Y + ++
Sbjct: 50 LANGVKQFPNHQALRVFYA---MVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106
Query: 189 YADSL 193
YAD L
Sbjct: 107 YADKL 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.1 bits (62), Expect = 3.7
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 238 TRTIIICGFPNVGKSSFLNKITR 260
R + + G P VGK++ ++K +
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASE 23
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 28.3 bits (63), Expect = 3.8
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 201 KAALGRMATIM-------KRQASNL-EYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKS 252
+A L T++ K A L + + + + P + + G P GKS
Sbjct: 29 RACLAEAITLVESTHSRKKELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKS 88
Query: 253 SFLNKITRA 261
+F+ +
Sbjct: 89 TFIEYFGKM 97
>3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase;
1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A*
3ldr_A 3lih_A* 3lf7_A 3lfi_A*
Length = 634
Score = 28.2 bits (62), Expect = 4.9
Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 3/88 (3%)
Query: 47 KYD---VIPEFMEGVNIADYIDPDIFKMPMYNFKKIAVVPTAKEFVDIMLSKTQRKTPTV 103
K D VI + V++ + P +F+ + A+ + +
Sbjct: 151 KLDQGPVIADHPFAVDVTAFRAPFVFRSARLDVLLSLDEEVARNETAVQQAVDGWTEKNA 210
Query: 104 IHKQYKISRIRSFYMRKIKYTQSNFHER 131
+ + Y Q+ +
Sbjct: 211 PWYVAVSGGVHGVGPAQFLYRQNGGNAS 238
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 27.4 bits (61), Expect = 5.5
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 239 RTIIICGFPNVGKSSFLNKITRAD-VDVQP-YAFTTKSLYVGHTDYKYLRWQVIDTPG 294
R ++ G + GK+ ++ D Q ++ V + + +ID PG
Sbjct: 8 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN--NNRGNSLTLIDLPG 63
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 27.5 bits (62), Expect = 5.8
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 239 RTIIICGFPNVGKSSFLNKITRADVD 264
+T+++ G VG+S N + + +
Sbjct: 20 KTLVLIGASGVGRSHIKNALLSQNPE 45
>2jln_A MHP1; hydantoin, transporter, membrane protein,
nucleobase-cation-symport-1 family; 2.85A
{Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Length = 501
Score = 27.8 bits (62), Expect = 6.2
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 31 DYVLDLKKNYDLPDEYKYDVIPEFMEGVNIA 61
DY L ++ L D Y+ I + GVN
Sbjct: 380 DYFLVRRRRISLHDLYRTKGIYTYWRGVNWV 410
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 28.0 bits (63), Expect = 6.5
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 8/46 (17%)
Query: 283 KYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDIS 328
+ W L+ + + E+ A R F+D+S
Sbjct: 343 ELFNW--------LEKEVPKGGVTEISAADKAEEFRRQQADFVDLS 380
>3rpj_A Curlin genes transcriptional regulator; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
transcription RE; 1.90A {Proteus mirabilis}
Length = 134
Score = 26.9 bits (59), Expect = 6.8
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 120 KIKYTQSNFHERLSQIIQEF 139
I T FH+ L + E
Sbjct: 98 SIHETLIRFHDFLQAAVSEL 117
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 27.3 bits (60), Expect = 6.9
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 238 TRTIIICGFPNVGKSSFLNKITR 260
+ +++ G P VG ++
Sbjct: 3 NKVVVVTGVPGVGSTTSSQLAMD 25
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 26.9 bits (60), Expect = 7.6
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 241 IIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVID 291
I++ G GK++ L K+ + V P T V +YK + + V D
Sbjct: 32 ILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNICFTVWD 79
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 26.8 bits (60), Expect = 8.2
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 241 IIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
+II G N GK++ L + + + V P T V R+ + D G
Sbjct: 24 VIIVGLDNAGKTTILYQFSMNEVVHTSP----TIGSNVEEIVINNTRFLMWDIGG 74
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.5 bits (60), Expect = 8.6
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 222 EQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLN----------KITRADVDVQPYAFT 271
QV + + F T+++ G +GKS+ +N + ++
Sbjct: 19 NQVYRKSVK----RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQV 74
Query: 272 TKSLYVGHTDYKYLRWQVIDTPGILDH 298
+S + L ++DTPG D
Sbjct: 75 EQSKVLIKEGGVQLLLTIVDTPGFGDA 101
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 26.7 bits (60), Expect = 8.6
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 239 RTIIICGFPNVGKSSFLNKITRADVD 264
+T+++ G VG+ N + D
Sbjct: 6 KTLVLLGAHGVGRRHIKNTLITKHPD 31
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped
dimer, enzyme complex with COFA product, oxidoreductase;
HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP:
a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Length = 436
Score = 27.1 bits (61), Expect = 8.8
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 14/53 (26%)
Query: 18 RKLERHIEEEMQDDYVLDLKKNYDLPDEYKYDVI--PEFM-EGVNIADYIDPD 67
+ + E+ K + + V PEF+ E I DY P
Sbjct: 131 NNVVIPLIEDCS-------GKKAGVD----FGVGTNPEFLRESTAIKDYDFPP 172
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 26.9 bits (59), Expect = 9.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 241 IIICGFPNVGKSSFLNKITRA 261
III G P VGK++ + KI
Sbjct: 3 IIITGEPGVGKTTLVKKIVER 23
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 27.5 bits (60), Expect = 9.2
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 209 TIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSF 254
MK + LE++R P ++I G GK+S
Sbjct: 116 HTMKYIYNLHFMLEKIRMSNFEGP-------RVVIVGGSQTGKTSL 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.402
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,706,967
Number of extensions: 355517
Number of successful extensions: 1077
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1045
Number of HSP's successfully gapped: 128
Length of query: 358
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 263
Effective length of database: 4,049,298
Effective search space: 1064965374
Effective search space used: 1064965374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)