RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15712
(358 letters)
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 63.3 bits (153), Expect = 5e-12
Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 3/133 (2%)
Query: 222 EQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHT 280
++ + L L D + TI++ G VGKSS +N I V + P+ +
Sbjct: 16 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 75
Query: 281 DYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIG 340
+IDTPG+++ + + + L +LY +
Sbjct: 76 SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVD--NLDKL 133
Query: 341 LFKSIRPLFNNKV 353
+ K+I F +
Sbjct: 134 VAKAITDSFGKGI 146
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 57.4 bits (137), Expect = 2e-10
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKY-LRWQVIDTPGILDHS 299
+ + G+PN GKSS L +TRA + PY FTT S +G + R+ + D PGI++ +
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 300 LEDRNIIE 307
E + +
Sbjct: 64 SEGKGLGL 71
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 56.5 bits (135), Expect = 4e-10
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQV-IDTPGILDH 298
+ + GFP+VGKS+ L+ ++ A + Y FTT +G + R V D PG+++
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62
Query: 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDI 327
+ + + L H+ + I
Sbjct: 63 AHQGVGLGH----QFLRHIERTRVIVHVI 87
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 53.0 bits (126), Expect = 2e-08
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 26/113 (23%)
Query: 243 ICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVG------------------------ 278
+ G PNVGKS+F + T DV++ Y FTT VG
Sbjct: 5 VVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEY 64
Query: 279 HTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQC 331
+ +++D G++ + E R + + +A+++ +D + +
Sbjct: 65 RNGLALIPVKMVDVAGLVPGAHEGRGL--GNKFLDDLRMASALIHVVDATGKT 115
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 50.7 bits (120), Expect = 2e-08
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 241 IIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299
++I G PNVGKS+ LN++ D V TT+ + + + ++++DT G+ S
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV--RS 60
Query: 300 LEDRNIIEMQAVTALAHLRAA--VLYFIDISEQCGHSIQEQ 338
+ + + L + A VL+ +D S ++
Sbjct: 61 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI 101
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 50.1 bits (118), Expect = 6e-08
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299
TII G NVGKS+ + ++T V T+ + ++ ++ID PG
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK----IIEIEWKNHKIIDMPGFGFMM 57
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 48.0 bits (114), Expect = 6e-07
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 243 ICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVG 278
I G PNVGKS+ N +T+A ++ Y F T G
Sbjct: 7 IVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG 42
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 46.6 bits (109), Expect = 8e-07
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 241 IIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299
I I G PNVGKS+ LNK+ + A TT+ VG + +DTPG+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGH 333
N + +A ++ V++ ++ +
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPD 101
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 45.2 bits (106), Expect = 5e-06
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 243 ICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSLE 301
I G PNVGKS+F IT++ + + Y + T R+ + +
Sbjct: 15 IVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVP 74
Query: 302 DRN-IIEMQAVTALAHLRAAVLYFIDISEQCGHSI 335
+ ++ +T A + + +I
Sbjct: 75 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAI 109
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 43.2 bits (100), Expect = 9e-06
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 240 TIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298
++I G PN GKSS LN + + V A TT+ + H + +IDT G+ +
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62
Query: 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQ 336
S E I +A + + + +
Sbjct: 63 SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAE 100
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 43.5 bits (101), Expect = 9e-06
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 240 TIIICGFPNVGKSSFLNKITRADVD-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI-LD 297
+ I G PNVGKS+ N I + V P TT+ ++ +DT G+
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 69
Query: 298 HSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQ 336
+E R + + + + A + I + G + Q
Sbjct: 70 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ 108
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 42.8 bits (99), Expect = 1e-05
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 240 TIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKYLRWQVIDTP 293
T++I G PNVGKS+ NK+ + V+ T+ ++ ++++DT
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTC 56
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 41.7 bits (96), Expect = 4e-05
Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 2/111 (1%)
Query: 228 LSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRW 287
+ LPS + G N GKSS LN +T + ++ + + +
Sbjct: 8 IRHLPSDTGIE--VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR 65
Query: 288 QVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQ 338
V E+ +A+ R ++ + + +
Sbjct: 66 LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD 116
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 38.6 bits (88), Expect = 4e-04
Identities = 20/94 (21%), Positives = 31/94 (32%)
Query: 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHS 299
+ I G PNVGKS+ LN + V T + + R V L
Sbjct: 7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66
Query: 300 LEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGH 333
++ Q V AV++ +D+
Sbjct: 67 MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTP 100
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 39.8 bits (92), Expect = 4e-04
Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 11/128 (8%)
Query: 221 LEQVRQHLSR-LPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFT----TKSL 275
++ +S L ID + + G GKSSF+N + + + A T
Sbjct: 38 IQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME 97
Query: 276 YVGHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSI 335
+ D PGI + +E + I + + +
Sbjct: 98 RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKM------KFYEYDFFIIISATRFKKND 151
Query: 336 QEQIGLFK 343
+
Sbjct: 152 IDIAKAIS 159
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 38.5 bits (88), Expect = 5e-04
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTP 293
+III G N GK+S L +T V + DY ++D P
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDGSGVTLVDFP 54
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 38.3 bits (88), Expect = 5e-04
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
I+I G VGKSS L + T D ++ + D + + DT G
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 37.9 bits (87), Expect = 6e-04
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVG--HTDYKYLRWQVIDTPG 294
I++ G VGK+ + + T+ A + + + ++ Q+ DT G
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 37.9 bits (87), Expect = 7e-04
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
I+I G +VGK+SFL + + + + K ++ Q+ DT G
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 37.6 bits (86), Expect = 9e-04
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
++ G GKS L++ + D + + KY++ Q+ DT G
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 37.0 bits (84), Expect = 0.001
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300
+++ G N GK++ L K DVD T + +++ + + D G
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTI---SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 61
Query: 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQC 331
RN E A D +
Sbjct: 62 YWRNYFESTDGLIWVVDSADRQRMQDCQREL 92
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 36.9 bits (84), Expect = 0.001
Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 7/99 (7%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300
I++ G GK++ L K+ ++ V + + + W D G
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW---DVGGQDKI-- 57
Query: 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQI 339
R + + + + + +
Sbjct: 58 --RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML 94
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 36.7 bits (84), Expect = 0.002
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
+++ G VGK+ L + + + + D K ++ Q+ DT G
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 36.5 bits (83), Expect = 0.002
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 239 RTIIICGFPNVGKSSFLNKITRADVD 264
R ++ G + GK+ ++
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYR 26
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 35.9 bits (82), Expect = 0.003
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
I++ G VGKS L + + + + + K ++ Q+ DT G
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 36.4 bits (83), Expect = 0.004
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 190 ADSLYRCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNV 249
A+S+ R +Q ++A L + T++ ++ + + Q L + T + + G P
Sbjct: 8 AESIRRLRQGERATLAQAMTLV--ESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGA 65
Query: 250 GKSSFLNKITRADVD----VQPYAFTTKSLYVGHTDYK 283
GKS+FL + V A S G +
Sbjct: 66 GKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILG 103
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 34.7 bits (78), Expect = 0.008
Identities = 7/50 (14%), Positives = 20/50 (40%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVI 290
++ G N GK++ L+ + + + S + + K+ + +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLG 52
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 34.3 bits (77), Expect = 0.011
Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 3/100 (3%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQ---PYAFTTKSLYVGHTDYKYLRWQVIDTPGILD 297
+II G VGK+S +++ Q + V K QV DT G
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 64
Query: 298 HSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQE 337
L + F +I +
Sbjct: 65 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVH 104
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 34.1 bits (77), Expect = 0.013
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
+++ G VGKS L + + D + D K ++ Q+ DT G
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 64
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 34.1 bits (77), Expect = 0.014
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVG--HTDYKYLRWQVIDTPG 294
+++ G VGKS+ L++ TR + +++ + D K ++ Q+ DT G
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 62
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 34.0 bits (76), Expect = 0.018
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 240 TIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVI 290
I + G NVGKSSF+N + + + K+ + V
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVD 75
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 32.9 bits (74), Expect = 0.025
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLY---VGHTDYKYLRWQVIDTPG 294
+++ G VGK+ L + + T + V D ++ Q+ DT G
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 33.1 bits (74), Expect = 0.029
Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 3/102 (2%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298
+II G VGK+S +N+ + + D + + Q+ DT G
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 64
Query: 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIG 340
A + + Q
Sbjct: 65 Q-SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQAS 105
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 32.8 bits (73), Expect = 0.029
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 241 IIICGFPNVGKSSFLNKITRADVD 264
I+I G GK++ L ++ +V
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVV 31
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 33.3 bits (75), Expect = 0.033
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 201 KAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITR 260
+AAL R T+ ++ ++ VR + + + I G P VGKS+ ++ +
Sbjct: 16 RAALARAITLA--ESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 73
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 32.2 bits (72), Expect = 0.048
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 228 LSRLPSIDPFTRTIIICGFPNVGKSSFLNKIT 259
L +L S I++ G N GK++ L ++
Sbjct: 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLA 37
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 32.4 bits (72), Expect = 0.048
Identities = 6/48 (12%), Positives = 16/48 (33%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQ 288
++ G N GK++ L+ + + S + + +
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFD 63
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 32.3 bits (72), Expect = 0.049
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRW 287
+II G N GK++ L + + +V + + + ++L W
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMW 64
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 32.2 bits (72), Expect = 0.053
Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 3/110 (2%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300
I++ G GK++ L K+ T V YK +++ V D G
Sbjct: 15 ILMLGLDAAGKTTILYKLKL---GQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP 71
Query: 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFN 350
R+ A + ++ I ++ I N
Sbjct: 72 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 32.2 bits (72), Expect = 0.055
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
II G VGKS L++ T + D + + ++ Q+ DT G
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 62
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 31.6 bits (70), Expect = 0.071
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298
+++ G VGKSS + + D + + + +R + DT G +
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 64
Query: 299 S 299
Sbjct: 65 D 65
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 31.9 bits (71), Expect = 0.078
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTP 293
I+I G GK++ L ++ +V T V YK L+ V D
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEV---VTTKPTIGFNVETLSYKNLKLNVWDLG 69
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 31.6 bits (70), Expect = 0.086
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQ 266
+ + G GK++F+N I +
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNED 30
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 31.1 bits (69), Expect = 0.10
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
++ G +VGK+S + + D Q + + + +R Q+ DT G
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 58
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 31.1 bits (69), Expect = 0.11
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDY---KYLRWQVIDTPGILD 297
+I+ G VGKSS +N+ + T ++ ++ Q+ DT G
Sbjct: 9 VILLGDGGVGKSSLMNRYVT-NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67
Query: 298 HS 299
Sbjct: 68 FR 69
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 31.1 bits (69), Expect = 0.13
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 2/73 (2%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298
+++ G VGK+S + + + + + + K + + DT G
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 65
Query: 299 SLEDRNIIEMQAV 311
Sbjct: 66 HALGPIYYRDSNG 78
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.8 bits (68), Expect = 0.15
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
+++ G VGKSS + + + + D +++++ DT G
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 30.6 bits (68), Expect = 0.16
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDH 298
II G VGKS L + T R + + D K ++ Q+ DT G
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG---- 61
Query: 299 SLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQE 337
R+I A L + + +++
Sbjct: 62 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED 100
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 30.7 bits (68), Expect = 0.17
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 241 IIICGFPNVGKSSFLNKITRA 261
+ + GK++ L K+ A
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPA 25
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 31.0 bits (69), Expect = 0.18
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 226 QHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRADV-DVQPYAFTTKSLYVGHTDYKY 284
R + P +I G PNVGKS+ +N++ + ++ T S +
Sbjct: 100 FDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKE- 158
Query: 285 LRWQVIDTPGILDHSLEDRNIIEMQAVT 312
+++DTPGIL ED + AVT
Sbjct: 159 --LELLDTPGILWPKFEDELVGLRLAVT 184
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 30.4 bits (67), Expect = 0.20
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
+ + G VGKSS + + D ++ P + + ++ + DT G
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 30.2 bits (67), Expect = 0.20
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 239 RTIIICGFPNVGKSSFLNKITRA 261
+ G+ + GK++ + K A
Sbjct: 2 NVWQVVGYKHSGKTTLMEKWVAA 24
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 30.3 bits (67), Expect = 0.24
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300
+++ G GKS+F+ ++ P T + D + + ++++D G
Sbjct: 5 LLLLGTGESGKSTFIKQMRIIHGSGVP----TTGIIEYPFDLQSVIFRMVDVGGQRSERR 60
Query: 301 EDRNIIEMQ 309
+ + E
Sbjct: 61 KWIHCFENV 69
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 30.4 bits (68), Expect = 0.24
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 242 IICGFPNVGKSSFLNKIT-RADVDVQPYAFTTKSLYVGHTDYKYLRW-----QVIDTPGI 295
+ G VGKSS LN I + V + + T L V+DTPG
Sbjct: 99 TMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQR-GRHTTTTAQLLKFDFGGYVVDTPGF 157
Query: 296 LDHSLEDRNIIEMQA 310
+ + D E++
Sbjct: 158 ANLEINDIEPEELKH 172
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 30.0 bits (66), Expect = 0.29
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
II+ G NVGK+ + R + D + ++ Q+ DT G
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 29.6 bits (65), Expect = 0.32
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 238 TRTIIICGFPNVGKSSFLNKITRAD-VDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGIL 296
T +++ G VGKS+ + ++ V + D R ++DT G
Sbjct: 6 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 65
Query: 297 DH 298
+
Sbjct: 66 EF 67
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.3 bits (67), Expect = 0.32
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 241 IIICGFPNVGKSSFLNKITR 260
++ G GK++ + R
Sbjct: 3 VVFVGTAGSGKTTLTGEFGR 22
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 29.3 bits (64), Expect = 0.47
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 241 IIICGFPNVGKSSFLNKITRADVD 264
+++ G P VGKS+ +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDG 27
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 29.3 bits (64), Expect = 0.47
Identities = 7/47 (14%), Positives = 12/47 (25%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRW 287
+++ G VGKS+ N + T
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 52
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 29.6 bits (65), Expect = 0.51
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 241 IIICGFPNVGKSSFLNKITR 260
I++ G P GK+ K+TR
Sbjct: 5 IVMVGLPARGKTYISKKLTR 24
Score = 27.6 bits (60), Expect = 2.2
Identities = 16/156 (10%), Positives = 47/156 (30%), Gaps = 8/156 (5%)
Query: 104 IHKQYKISRIRSFYMRKIKYTQSNFHERLSQIIQEFPKLDNIHPFYADLMNILYDKDHYK 163
+ K YK + + +++F + H D N ++
Sbjct: 45 MVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMI 104
Query: 164 LGLGQLNQARHLIDNVAKDYLRLMKYADSLYRCKQLKKAALGRMATIMKRQASNLEYLEQ 223
G+ N + ++ + + K + R + +++ +
Sbjct: 105 FNFGEQNGYKTFFVESICVDPEVIAAN--IVQVKLGSPDYVNRDSDEATE-----DFMRR 157
Query: 224 VRQHLSRL-PSIDPFTRTIIICGFPNVGKSSFLNKI 258
+ + + + R + +VG+S +N++
Sbjct: 158 IECYENSYESLDEEQDRDLSYIKIMDVGQSYVVNRV 193
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.8 bits (63), Expect = 0.71
Identities = 11/100 (11%), Positives = 26/100 (26%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300
+ + G VGKSS + + + + + K + I
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP 64
Query: 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIG 340
+ + + + ++ + I E G
Sbjct: 65 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG 104
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 28.5 bits (62), Expect = 0.84
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 294
+++ G VGKSS + + + +P + +++++ DT G
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 28.5 bits (62), Expect = 0.87
Identities = 12/112 (10%), Positives = 23/112 (20%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300
+++ G VGKS+ + + S + +
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 66
Query: 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNK 352
R L + ++ I L NK
Sbjct: 67 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 118
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 0.89
Identities = 5/48 (10%), Positives = 18/48 (37%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQ 288
+++ G GK++F+ + + + + A ++ +
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 53
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.8 bits (63), Expect = 0.93
Identities = 13/113 (11%), Positives = 25/113 (22%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHSL 300
I++ +GKS+F+ + L + + + +
Sbjct: 38 IMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDS 97
Query: 301 EDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQIGLFKSIRPLFNNKV 353
R IIE F + +R V
Sbjct: 98 LKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDV 150
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 28.5 bits (63), Expect = 0.99
Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 14/131 (10%)
Query: 186 LMKYADSLYRCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSIDPFTRTIIICG 245
L++ D+ + + + + + + L + H +T + G
Sbjct: 53 LIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPH--------FQDKTTVFAG 104
Query: 246 FPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQ-----VIDTPGILDHSL 300
VGKSS LN I+ + HT V DTPG
Sbjct: 105 QSGVGKSSLLNAISPELGLRT-NEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEF 163
Query: 301 EDRNIIEMQAV 311
D E+
Sbjct: 164 TDIEEEELGYT 174
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.2 bits (61), Expect = 1.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 238 TRTIIICGFPNVGKSSFLNKITR 260
+R I I G+ +VGKSS +
Sbjct: 4 SRKIAILGYRSVGKSSLTIQFVE 26
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 28.4 bits (62), Expect = 1.0
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 236 PFTRTIIICGFPNVGKSSFLNKITR 260
P ++ G VGK+ L T
Sbjct: 3 PQAIKCVVVGDGAVGKTCLLISYTT 27
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.0 bits (61), Expect = 1.1
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFT-TKSLYVGHTDYKYLRWQVIDTPGILDHS 299
+++ G VGKS+ + + D +++DT G +
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 28.0 bits (61), Expect = 1.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 241 IIICGFPNVGKSSFLNKITR 260
+I+ G VGKS+ +
Sbjct: 7 VIMVGSGGVGKSALTLQFMY 26
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 28.1 bits (61), Expect = 1.2
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 239 RTIIICGFPNVGKSSFLNKITR 260
+ ++I G GK+ L ++
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSK 24
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 28.0 bits (61), Expect = 1.2
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 241 IIICGFPNVGKSSFLNKIT--RADVDVQPYAFTTKSLYVGHTDYKYLRWQ 288
++ G VGK+ L + P F ++ V +YL
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGL 61
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.9 bits (61), Expect = 1.5
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 220 YLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRA 261
YL + LS P + ++ GFP GKS+F+ + +
Sbjct: 2 YLPESSSLLSPNPEV------VVAVGFPGAGKSTFIQEHLVS 37
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 27.7 bits (60), Expect = 1.7
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQV 289
+ I G VGKS+ + + + Y T +S Y +
Sbjct: 5 LAIFGRAGVGKSALVVRFLT-KRFIWEYDPTLESTYRHQATIDDEVVSM 52
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 27.7 bits (60), Expect = 1.7
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 241 IIICGFPNVGKSSFLNKITR 260
I++ G GK++ L+ +
Sbjct: 5 IVVVGDSQCGKTALLHVFAK 24
>d1xqoa_ a.96.1.6 (A:) 8-oxoguanine DNA glycosylase, AgoG
{Pyrobaculum aerophilum [TaxId: 13773]}
Length = 253
Score = 27.9 bits (62), Expect = 1.8
Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 176 IDNVAKDYLRLMKYADSLYRCKQLKKAALGRMATIMKRQASNLEYLEQVRQHLSRLPSID 235
+ ++ +D+L+ ++ + L + +K + NLE L + LS +
Sbjct: 80 VIDLCRDFLKYIETSPFLKIGVEARKKRALKACD----YVPNLEDLGLTLRQLSHIVGAR 135
Query: 236 PFTRTII 242
+T++
Sbjct: 136 REQKTLV 142
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 27.6 bits (60), Expect = 1.8
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 241 IIICGFPNVGKSSFLNKITR 260
+++ G VGKS+ ++ +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQ 25
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 27.7 bits (60), Expect = 1.9
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 241 IIICGFPNVGKSSFLNKITR 260
++ G VGK+ L T
Sbjct: 6 CVVVGDGAVGKTCLLISYTT 25
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.5 bits (60), Expect = 2.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 241 IIICGFPNVGKSSFLNKITR 260
++ G VGK++FL + T
Sbjct: 8 LLALGDSGVGKTTFLYRYTD 27
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 27.5 bits (60), Expect = 2.4
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 241 IIICGFPNVGKSSFLNKITRADV 263
I + G + GKSS L D
Sbjct: 29 IAVVGGQSAGKSSVLENFVGRDF 51
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 27.5 bits (60), Expect = 2.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 241 IIICGFPNVGKSSFLNKITRADV 263
I++ G + GKSS L I D
Sbjct: 27 IVVVGSQSSGKSSVLENIVGRDF 49
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 27.0 bits (58), Expect = 3.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 237 FTRTIIICGFPNVGKSSFLNKITR 260
F +T+ I G + GKS +NK+
Sbjct: 6 FAKTVAILGGESSGKSVLVNKLAA 29
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.5 bits (57), Expect = 3.3
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 241 IIICGFPNVGKSSFLNKITR 260
+++ G VGKS+ + +
Sbjct: 8 LVVVGGGGVGKSALTIQFIQ 27
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 26.7 bits (59), Expect = 3.7
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 218 LEYLEQVRQHLSRLPSIDPFTRTIIICGFPNVGKSSFLNKITRA 261
+ +L ++ L P ++ CG N GKS F
Sbjct: 37 ITFLGALKSFLKGTPK----KNCLVFCGPANTGKSYFGMSFIHF 76
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.8 bits (58), Expect = 3.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 241 IIICGFPNVGKSSFLNKIT 259
I++ G GKS+FL ++
Sbjct: 5 ILLLGAGESGKSTFLKQMR 23
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.5 bits (57), Expect = 4.2
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 241 IIICGFPNVGKSSFLNKITR 260
+++ G VGKS+ + +
Sbjct: 6 LVVLGSGGVGKSALTVQFVQ 25
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.5 bits (57), Expect = 4.3
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 241 IIICGFPNVGKSSFLNKITR 260
+ + G GKSS +++
Sbjct: 8 LGVLGDARSGKSSLIHRFLT 27
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.4 bits (57), Expect = 4.4
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 239 RTIIICGFPNVGKSSFLNKITRADVDVQPYAF--TTKSLYVGHTDYK 283
R +++ G GKS+ L K+ + + ++ TT++ G D K
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGK 47
>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit
{Escherichia coli [TaxId: 562]}
Length = 817
Score = 27.1 bits (59), Expect = 4.5
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 18 RKLERHIEEEMQ--DDYVLDLKKNYDLPDEYKYDVIPEFMEGVNIADYIDPDIFKMPMYN 75
L + E + ++ + NY P E + D + + G + D D + +
Sbjct: 625 HHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDEVAKENNGYALEDLYDAN----GVLI 680
Query: 76 FKKIAVVPTAKEFVD 90
KK ++ + D
Sbjct: 681 AKKGQLLSSFAHLRD 695
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 26.4 bits (57), Expect = 4.8
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 240 TIIICGFPNVGKSSFLNKITRA 261
++ GF GK++ L I
Sbjct: 5 VTLLTGFLGAGKTTLLRHILNE 26
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 26.2 bits (56), Expect = 5.5
Identities = 8/51 (15%), Positives = 19/51 (37%)
Query: 241 IIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVID 291
+ + G + GK++ L+ I + V + T+ + + D
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGD 58
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 26.3 bits (57), Expect = 5.9
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 241 IIICGFPNVGKSSFLNKITRADV 263
+++ G GKS+ + ++ V
Sbjct: 9 LLLLGAGESGKSTIVKQMRILHV 31
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 26.3 bits (56), Expect = 6.2
Identities = 17/125 (13%), Positives = 32/125 (25%), Gaps = 1/125 (0%)
Query: 219 EYLEQVRQHLSR-LPSIDPFTRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYV 277
+ L+Q+ L L + + G P GK+ L K+ D F + ++
Sbjct: 23 QQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 82
Query: 278 GHTDYKYLRWQVIDTPGILDHSLEDRNIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQE 337
+ R+ V L + +D + I
Sbjct: 83 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILS 142
Query: 338 QIGLF 342
Sbjct: 143 TFIRL 147
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 25.8 bits (55), Expect = 6.3
Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 238 TRTIIICGFPNVGKSSFLNKITRADVDVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILD 297
TR II+ G + GKS + + AF SL I+
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVL-PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 298 HSLEDR--NIIEMQAVTALAHLRAAVLYFIDISEQCGHSIQEQI 339
S+ + A +A RA ID G + QE+
Sbjct: 62 VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERW 105
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 25.7 bits (55), Expect = 8.2
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 241 IIICGFPNVGKSSFLNKIT 259
+++ G GKS+ + ++
Sbjct: 5 LLLLGAGESGKSTIVKQMK 23
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 25.8 bits (55), Expect = 8.5
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 12/51 (23%)
Query: 216 SNLEYLEQVRQHLSRLPS----ID-------PFTRTIIICGFPNVGKSSFL 255
S ++ L+Q R + +L + +D G GK+ +
Sbjct: 2 SGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIM 51
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional
regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Length = 89
Score = 24.4 bits (53), Expect = 8.8
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 184 LRLMKYADSLYRCKQLKKAA--LGRMATIMKRQASNLEYLEQVR 225
L L+ D+LYR + + AA L A+ L
Sbjct: 8 LNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDE 51
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 25.3 bits (54), Expect = 9.1
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 238 TRTIIICGFPNVGKSS 253
T I + G G ++
Sbjct: 2 TEPIFMVGARGCGMTT 17
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.402
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,393,212
Number of extensions: 69488
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 124
Length of query: 358
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,226,816
Effective search space: 333693952
Effective search space used: 333693952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)