BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15713
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OCD|A Chain A, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|B Chain B, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|C Chain C, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|D Chain D, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
Length = 337
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 59/84 (70%), Gaps = 2/84 (2%)
Query: 1 MNGVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDV 59
+N IL T+G GN P N +LL LK+A+ERGVI+VN +QC G + Y TG +L D
Sbjct: 235 VNAXILLTFGVGNAPQN-PELLAQLKAASERGVIVVNLTQCLAGKVNXGGYATGCALADA 293
Query: 60 GVITGYDMTPESALTKLSYVLSKS 83
GVI+GYD TPE+AL KL Y+LS++
Sbjct: 294 GVISGYDXTPEAALAKLHYLLSQN 317
>pdb|3NTX|A Chain A, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
pdb|3NTX|B Chain B, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
Length = 341
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
Query: 1 MNGVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDV 59
+ +IL++YG GN P +A+LL+ LK+A++RG+++VN +QC G+ + Y TG +L
Sbjct: 237 VKALILRSYGVGNAPQ-KAELLDELKNASDRGIVVVNLTQCISGSVNXGGYATGNALAQA 295
Query: 60 GVITGYDMTPESALTKLSYVLSKS 83
GVI+G+D T E+ALTKL Y+LS+S
Sbjct: 296 GVISGFDXTVEAALTKLHYLLSQS 319
>pdb|2HIM|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 4 VILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDVGVI 62
+IL++YG GN P N+A L+ L+ A++RG+++VN +QC G + Y TG +L GVI
Sbjct: 257 LILRSYGVGNAPQNKA-FLQELQEASDRGIVVVNLTQCMSGKVNMGGYATGNALAHAGVI 315
Query: 63 TGYDMTPESALTKLSYVLSK 82
G DMT E+ LTKL Y+LS+
Sbjct: 316 GGADMTVEATLTKLHYLLSQ 335
>pdb|2P2D|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 4 VILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDVGVI 62
+IL++YG GN P N+A L+ L+ A++RG+++VN +QC G + Y TG +L GVI
Sbjct: 257 LILRSYGVGNAPQNKA-FLQELQEASDRGIVVVNLTQCMSGKVNMGGYATGNALAHAGVI 315
Query: 63 TGYDMTPESALTKLSYVLSK 82
G DMT E+ LTKL Y+LS+
Sbjct: 316 GGADMTVEATLTKLHYLLSQ 335
>pdb|1ZQ1|A Chain A, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
pdb|1ZQ1|B Chain B, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
Length = 438
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDVGV 61
G++++ G G+ P+ D++ ++ A E GV + SQC G + N+Y TG+ L GV
Sbjct: 331 GIVIEGTGLGHTPN---DIIPSIERAVEEGVAVCXTSQCIYGRVNLNVYSTGRKLLKAGV 387
Query: 62 ITGYDMTPESALTKLSYVLSKSDWTLEKKKTSLTD-VGVITGY 103
I D PE+A KL +VL + E +K LT+ G IT Y
Sbjct: 388 IPCEDXLPETAYVKLXWVLGHTQNLEEVRKXXLTNYAGEITPY 430
>pdb|2D6F|A Chain A, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
pdb|2D6F|B Chain B, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
Length = 435
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDVGV 61
G++++ G G+ P L+ ++ A++ GV + SQC G + N+Y TG+ L GV
Sbjct: 328 GIVIEGTGLGHCPDT---LIPVIGEAHDMGVPVAMTSQCLNGRVNMNVYSTGRRLLQAGV 384
Query: 62 ITGYDMTPESALTKLSYVLSKSD 84
I DM PE A K+ +VL ++D
Sbjct: 385 IPCDDMLPEVAYVKMCWVLGQTD 407
>pdb|1WNF|A Chain A, Crystal Structure Of Ph0066 From Pyrococcus Horikoshii
pdb|1WNF|B Chain B, Crystal Structure Of Ph0066 From Pyrococcus Horikoshii
Length = 328
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 2 NGVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYETGKSLTDVGV 61
G+IL+ YG G P DL E++ S ++R +++ G Y+ G+ + GV
Sbjct: 225 KGIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTTQAIYDGVDLQRYKVGRIALEAGV 284
Query: 62 ITGYDMTPESALTKLSYVLSKS 83
I DMT E+ +TKL ++L +
Sbjct: 285 IPAGDMTKEATITKLMWILGHT 306
>pdb|1WLS|A Chain A, Crystal Structure Of L-Asparaginase I Homologue Protein
From Pyrococcus Horikoshii
pdb|1WLS|B Chain B, Crystal Structure Of L-Asparaginase I Homologue Protein
From Pyrococcus Horikoshii
Length = 328
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYETGKSLTDVGVI 62
G+IL+ YG G P DL E++ S ++R +++ G Y+ G+ + GVI
Sbjct: 226 GIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTTQAIYDGVDLQRYKVGRIALEAGVI 285
Query: 63 TGYDMTPESALTKLSYVLSKS 83
D T E+ +TKL ++L +
Sbjct: 286 PAGDXTKEATITKLXWILGHT 306
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ +GAD++ KD+D R+ LH A EGH +IVK L+ GA V+ KD
Sbjct: 57 ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ +GAD++ KD+D R+ LH A EGH +IVK L+ GA V+ KD
Sbjct: 57 ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 217 EITQKLDIDGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
E + + D V L + GAD++ D+D R+ LH A EGH +IVK L+ GA V+ KD
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 369 EITQKLDIDGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
E + + D V L + GAD++ D+D R+ LH A EGH +IVK L+ GA V+ KD
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ +GAD++ KD+D R+ LH A EGH +IVK L+ GA V+ D
Sbjct: 90 ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD 133
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ +GAD++ KD+D R+ LH A EGH +IVK L+ GA V+ D
Sbjct: 90 ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD 133
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
+ +GAD++ D+D R+ L +A G+ +IVK L G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 419
+ +GAD++ D+D R+ L +A G+ +IVK L G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
L QGAD + KD+D ++ LH+A GH ++VK LL GA + KD
Sbjct: 57 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L QGAD + KD+D ++ LH+A GH ++VK LL GA + KD
Sbjct: 57 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
L QGAD + KD+D ++ LH+A GH ++VK LL GA + D
Sbjct: 90 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L QGAD + KD+D ++ LH+A GH ++VK LL GA + D
Sbjct: 90 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
L GAD++ D+D ++ LH+A GH ++VK LL GA + KD
Sbjct: 24 LENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD++ D+D ++ LH+A GH ++VK LL GA + KD
Sbjct: 24 LENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
L QGAD + D+D R+ L +A G+ ++VK L G
Sbjct: 123 LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 419
L QGAD + D+D R+ L +A G+ ++VK L G
Sbjct: 123 LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L +GAD + KD+D R+ LH A GH +IVK LL GA + KD T L
Sbjct: 57 LSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 107
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L +GAD + KD+D R+ LH A GH +IVK LL GA + KD
Sbjct: 57 LSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 100
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L +GAD + KD+D R+ LH A GH +IVK LL GA + D T L
Sbjct: 90 LSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPL 140
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L +GAD + KD+D R+ LH A GH +IVK LL GA + D
Sbjct: 90 LSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD + D+D R+ LH A GH +IVK LL GA + KD T L
Sbjct: 24 LENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 74
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD + D+D R+ LH A GH +IVK LL GA + KD
Sbjct: 24 LENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ +GAD++ KD+D R+ LH A GH ++VK L+ GA V+ KD
Sbjct: 57 ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ +GAD++ KD+D R+ LH A GH ++VK L+ GA V+ KD
Sbjct: 57 ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 217 EITQKLDIDGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
E + + D V L + GAD++ D+D R+ LH A GH ++VK L+ GA V+ KD
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 369 EITQKLDIDGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
E + + D V L + GAD++ D+D R+ LH A GH ++VK L+ GA V+ KD
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ +GAD++ KD+D R+ LH A GH ++VK L+ GA V+ D
Sbjct: 90 ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ +GAD++ KD+D R+ LH A GH ++VK L+ GA V+ D
Sbjct: 90 ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ GAD++ KD D + LH+A EGH +IV+ LL GA V+ KD+ T L
Sbjct: 34 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 84
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ KD D + LH+A EGH +IV+ LL GA V+ KD+ T L
Sbjct: 67 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 117
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ GAD++ KD D + LH+A EGH +IV+ LL GA V+ KD+
Sbjct: 34 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 78
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ KD D + LH+A EGH +IV+ LL GA V+ KD+
Sbjct: 67 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 111
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ KD D + LH+A EGH +IV+ LL GA V+ +D+ T
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 150
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ KD D + LH+A EGH +IV+ LL GA V+ +D+
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ GAD++ KD D + LH+A EGH +IV+ LL GA V+ KD+ T L
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 72
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ KD D + LH+A EGH +IV+ LL GA V+ KD+ T L
Sbjct: 55 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 105
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ GAD++ KD D + LH+A EGH +IV+ LL GA V+ KD+
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 66
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ KD D + LH+A EGH +IV+ LL GA V+ KD+
Sbjct: 55 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 99
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLT 278
L GAD++ KD D + LH+A EGH +IV+ LL GA V+ +D+ T
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ KD D + LH+A EGH +IV+ LL GA V+ +D+
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
GAD++ KD + R+ LH+A GH ++VK LL GA V+ KD+
Sbjct: 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ KD + R+ LH+A GH ++VK LL GA V+ KD+
Sbjct: 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
GAD++ KD + R+ LH+A GH ++VK LL GA
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 419
GAD++ KD + R+ LH+A GH ++VK LL GA
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 244 RSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
R+ LH+A GH ++VK LL GA V+ KD+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDK 33
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 396 RSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
R+ LH+A GH ++VK LL GA V+ KD+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDK 33
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ GAD++ KD D + LH+A EGH +IV+ LL GA V+ KD+ T L
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 72
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ KD D + LH+A EGH +IV+ LL GA V+ KD+ T L
Sbjct: 55 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 105
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ GAD++ KD D + LH+A EGH +IV+ LL GA V+ KD+
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 66
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ KD D + LH+A EGH +IV+ LL GA V+ KD+
Sbjct: 55 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 99
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLT 278
L GAD++ KD D + LH+A EGH +IV+ LL GA V+ +D+ T
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ KD D + LH+A EGH +IV+ LL GA V+ +D+
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 62/208 (29%)
Query: 240 DADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL----TNIRGELTSEKSTEG 295
D D R+ALH AC GHT+IV++LL G V++KD + L + R E+ +G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 296 GYDLVGAV----VRLLNLTTEKDKDDLRSVLFPA-------------MLQSAVMTGDLKR 338
+ V AV L+ K++ ++ +L + A G+LK
Sbjct: 97 AH--VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM 154
Query: 339 MEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSA 398
+ + + Y+ S N I+D + +
Sbjct: 155 VHIL------LFYKASTN---------------------------------IQDTEGNTP 175
Query: 399 LHIACCEGHTDIVKYLLLNGASVHEKDR 426
LH+AC E + K+L+ GAS++ +++
Sbjct: 176 LHLACDEERVEEAKFLVTQGASIYIENK 203
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGEL 287
LF A +I+D + + LH+AC E + K+L+ GAS++ +++ + T L +G L
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGL 216
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
GAD++ KD + R+ LH+A GH ++VK LL GA V+ KD+
Sbjct: 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ KD + R+ LH+A GH ++VK LL GA V+ KD+
Sbjct: 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
GAD++ KD + R+ LH+A GH ++VK LL GA V+ KD+
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ KD + R+ LH+A GH ++VK LL GA V+ KD+
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
GAD++ KD + R+ LH+A GH ++VK LL GA
Sbjct: 91 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 419
GAD++ KD + R+ LH+A GH ++VK LL GA
Sbjct: 91 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 244 RSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
R+ LH+A GH ++VK LL GA V+ KD+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDK 33
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 396 RSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
R+ LH+A GH ++VK LL GA V+ KD+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDK 33
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 22/209 (10%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTS 289
L GAD+ KD LH AC GH ++ + LL +GA V+ D Q T L E S
Sbjct: 78 LQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH----EAAS 133
Query: 290 EKSTEGGYDLV--GAVVRLLNLTTEKDKD-----DLRSVLF-----PAMLQSAVMTGDLK 337
+ E L+ GA L+N + D +LR L ++LQ+A DL
Sbjct: 134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAA-READLA 192
Query: 338 RMEEIKGY-VSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQR 396
++++ + N S L +++L + Q ++ L +GA+++ K+ D
Sbjct: 193 KVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAEL----LLRKGANVNEKNKDFM 248
Query: 397 SALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ LH+A H D+++ L +GA ++ D
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNALD 277
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 330 AVMTGDLKRMEEIKGYVSN-------IVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSL 382
AV+TG+ K+ E ++ S ++ ++N H + + P + + + L
Sbjct: 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL 76
Query: 383 F--QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD+ KD LH AC GH ++ + LL +GA V+ D
Sbjct: 77 LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L +GA+++ K+ D + LH+A H D+++ L +GA ++ D + T L
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 392 DADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
D + + LH+A IV+ LL +GA VH KD+
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK 89
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 240 DADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
D D R+ALH AC GHT+IV++LL G V++KD
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 70
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 392 DADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
D D R+ALH AC GHT+IV++LL G V++KD
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 70
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGEL 287
L+ A +I+D + + LH+AC E + K L+ GAS++ +++ + T L +G L
Sbjct: 159 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGL 216
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L+ A +I+D + + LH+AC E + K L+ GAS++ +++
Sbjct: 159 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK 203
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 240 DADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
D D R+ALH AC GHT+IV++LL G V++KD
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 71
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 392 DADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
D D R+ALH AC GHT+IV++LL G V++KD
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 71
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGEL 287
L+ A +I+D + + LH+AC E + K L+ GAS++ +++ + T L +G L
Sbjct: 160 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGL 217
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L+ A +I+D + + LH+AC E + K L+ GAS++ +++
Sbjct: 160 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK 204
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 240 DADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
D D R+ALH AC GHT+IV++LL G V++KD
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 70
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 392 DADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
D D R+ALH AC GHT+IV++LL G V++KD
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 70
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGEL 287
LF A +I+D + + LH+AC E + K+L+ GAS++ +++ + T L +G L
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGL 216
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
LF A +I+D + + LH+AC E + K+L+ GAS++ +++
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK 203
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASV 421
G ++ KD S LHIA G +IVK LL+ GA V
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV 99
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 327 LQSAVMTGDLKRMEEI--KGYVSNIVYEFSMNP-HLTTLISNLPQEITQKLDIDGVPSLF 383
L A G L+ +E + G N V M P L L +L EI + L L
Sbjct: 51 LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHL--EIVEVL-------LK 101
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ D + + LH+A GH +IV+ LL NGA V+ +D+
Sbjct: 102 NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ +DA + LH+A GH +IV+ LL NGA V+ D +T L
Sbjct: 36 NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPL 84
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D + + LH+A GH +IV+ LL NGA V+ +D+ T
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ +DA + LH+A GH +IV+ LL NGA V+ D
Sbjct: 36 NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH 78
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
L GAD++ D + L +A GH +IV+ LL NGA V+ D
Sbjct: 67 LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 203 QGALPFALNSSLPQ-EITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKY 261
QG+ P L + + EI + L L GAD++ +D D + LH+A GH +IV+
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVL-------LKHGADVNARDTDGWTPLHLAADNGHLEIVEV 98
Query: 262 LLLNGASVHEKDRVQLTVL 280
LL GA V+ +D LT L
Sbjct: 99 LLKYGADVNAQDAYGLTPL 117
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD++ +D D + LH+A GH +IV+ LL GA V+ +D
Sbjct: 67 LKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQD 110
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ +DA + LH+A GH +IV+ LL +GA V+ +D+ T
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ +DA + LH+A GH +IV+ LL +GA V+ +D+
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDK 144
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ GAD++ D + LH+A GH +IV+ LL +GA V+ +D
Sbjct: 34 MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ GAD++ D + LH+A GH +IV+ LL +GA V+ +D
Sbjct: 34 MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
L +GAD++ + D +ALH AC + + D+VK+L+ NGA++++ D
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L +GAD++ + D +ALH AC + + D+VK+L+ NGA++++ D
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
GAD++ KD D + LH+A EGH +IV+ LL GA V+ +D+
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 66
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ KD D + LH+A EGH +IV+ LL GA V+ +D+
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 66
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ GAD++ D D + LH+A GH +IV+ LL NGA V+ D +T L
Sbjct: 34 MANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPL 84
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ GAD++ D D + LH+A GH +IV+ LL NGA V+ D
Sbjct: 34 MANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D D + LH+A GH +IV+ LL +GA V+ +D+ T
Sbjct: 100 LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ D D + LH+A GH +IV+ LL +GA V+ +D+
Sbjct: 100 LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDK 144
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L GAD++ D + LH+A GH +IV+ LL +GA V+ D
Sbjct: 67 LKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDN 111
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ D + LH+A GH +IV+ LL +GA V+ D
Sbjct: 67 LKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDN 111
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 244 RSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
R+ LH+A EGH +IV+ LL +GA V+ KD +++T L
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL 104
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 396 RSALHIACCEGHTDIVKYLLLNGASVHEKD 425
R+ LH+A EGH +IV+ LL +GA V+ KD
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKD 97
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L GAD++ KD + +ALH A H ++V+ L+ GA VH + +
Sbjct: 87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ KD + +ALH A H ++V+ L+ GA VH + +
Sbjct: 87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ GAD++ +D + LH+A GH +IV+ LL NGA V+ KD + +T L
Sbjct: 34 MANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPL 84
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D+ + LH+A GH +IV+ LL NGA V+ +D+ T
Sbjct: 100 LKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ D+ + LH+A GH +IV+ LL NGA V+ +D+
Sbjct: 100 LKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDK 144
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ KD+ + LH+A GH +IV+ LL NGA V+ D T L
Sbjct: 67 LKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPL 117
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ GAD++ +D + LH+A GH +IV+ LL NGA V+ KD
Sbjct: 34 MANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD++ KD+ + LH+A GH +IV+ LL NGA V+ D
Sbjct: 67 LKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASD 110
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 225 DGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
D +P L + GA+ ++ADQ LH+AC +GH +VK LL + A ++KD
Sbjct: 100 DLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD 149
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 377 DGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
D +P L + GA+ ++ADQ LH+AC +GH +VK LL + A ++KD
Sbjct: 100 DLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD 149
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GA ++ + +ALH A E H +V+ LLL+GASV ++ Q T +
Sbjct: 172 LQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV 222
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASV 421
L GA ++ + +ALH A E H +V+ LLL+GASV
Sbjct: 172 LQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV 211
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 312 EKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYEF-----SMNPHLTTLISNL 366
E+ K D R V L AV GDL+ + + + + + + +P +
Sbjct: 3 EETKKDYREV---EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQC 59
Query: 367 PQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 420
P+ + + VP+ G +++ D S LH+A G D++ LL +GA+
Sbjct: 60 PKCAPAQKRLAKVPA--SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN 111
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 180 LQSAVMTGDLKRMEEIKGY-----VKRPQGALPFALNSSLPQ-EITQKLDIDGVPSLFQG 233
L A TG L+ +E + Y GA P L + EI + L L G
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL-------LKHG 103
Query: 234 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
AD++ KD + + LH+A +GH +IV+ LL GA V+ +D+ T
Sbjct: 104 ADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 327 LQSAVMTGDLKRMEEIKGYVS--NIVYEFSMNP-HLTTLISNLPQEITQKLDIDGVPSLF 383
L A TG L+ +E + Y + N + P HL N EI + L L
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAA--DNGHLEIVEVL-------LK 101
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ KD + + LH+A +GH +IV+ LL GA V+ +D+
Sbjct: 102 HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ GAD++ D + LH+A GH +IV+ LL GA V+ D T L
Sbjct: 34 MANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPL 84
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ GAD++ D + LH+A GH +IV+ LL GA V+ D
Sbjct: 34 MANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN 78
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L +GAD++ + D + LH+A GH +IVK LL GA V+ + +
Sbjct: 29 LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK 73
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L +GAD++ + D + LH+A GH +IVK LL GA V+ + +
Sbjct: 29 LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK 73
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEK 272
L +GAD++ + D + H+A GH +IVK L GA V+ +
Sbjct: 62 LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEK 424
L +GAD++ + D + H+A GH +IVK L GA V+ +
Sbjct: 62 LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 203 QGALPFALNSSLPQ-EITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKY 261
G P L +SL EI + L L GAD++ KDA + L++A GH +IV+
Sbjct: 67 NGTTPLHLAASLGHLEIVEVL-------LKYGADVNAKDATGITPLYLAAYWGHLEIVEV 119
Query: 262 LLLNGASVHEKDRVQLTVL 280
LL +GA V+ +D+ T
Sbjct: 120 LLKHGADVNAQDKFGKTAF 138
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D + + LH+A GH +IV+ LL GA V+ KD +T L
Sbjct: 55 LRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPL 105
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ GAD + D R+ LH+A GH +IV+ LL NGA V+ D
Sbjct: 22 MANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ GAD + D R+ LH+A GH +IV+ LL NGA V+ D
Sbjct: 22 MANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ KDA + L++A GH +IV+ LL +GA V+ +D+
Sbjct: 91 GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDK 132
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 338 RMEEIKGYVSNIVYEFSMNP-HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQR 396
R+ G +N + P H+ + +L EI + L L GAD++ D +
Sbjct: 19 RILMANGADANAYDHYGRTPLHMAAAVGHL--EIVEVL-------LRNGADVNAVDTNGT 69
Query: 397 SALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ LH+A GH +IV+ LL GA V+ KD
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYGADVNAKD 98
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ GAD++ +D ++ LH+A +GH +IV+ LL +GA V+ D++ T L
Sbjct: 34 MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPL 84
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ GAD++ +D ++ LH+A +GH +IV+ LL +GA V+ D+
Sbjct: 34 MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADK 78
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D + LH+A GH +IV+ LL NGA V+ D T L
Sbjct: 67 LKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPL 117
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD++ D + LH+A GH +IV+ LL NGA V+ D
Sbjct: 67 LKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD 110
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 358 HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLN 417
HL L +L EI + L L GAD++ D + LH+A GH +IV+ LL
Sbjct: 85 HLAALYGHL--EIVEVL-------LKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY 135
Query: 418 GASVHEKDR 426
GA V+ +D+
Sbjct: 136 GADVNAQDK 144
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D + LH+A GH +IV+ LL GA V+ +D+ T
Sbjct: 100 LKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAF 150
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
GAD++ KD + + LH+A GH ++VK LL GA V+ +D+
Sbjct: 29 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ KD + + LH+A GH ++VK LL GA V+ +D+
Sbjct: 29 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D+ + LH+A +GH +IV+ LL +GA V+ DR T L
Sbjct: 59 LKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPL 109
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ D+ + LH+A +GH +IV+ LL +GA V+ DR
Sbjct: 59 LKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDR 103
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ GAD++ D + + LH+A G +IV+ LL NGA V+ D +T L
Sbjct: 26 MANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPL 76
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D + LH+A G +IV+ LL +GA V+ +D + LT
Sbjct: 92 LKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAF 142
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ GAD++ D + + LH+A G +IV+ LL NGA V+ D
Sbjct: 26 MANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD++ D + LH+A G +IV+ LL +GA V+ +D
Sbjct: 92 LKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 16/105 (15%)
Query: 327 LQSAVMTGDLKRMEEIKGYVSNI----VYEFSMNP-HLTTLISNLPQEITQKLDIDGVPS 381
L A ++G L+ +E + + +++ VY F+ P HL + +L EI + L
Sbjct: 51 LHLAAVSGHLEIVEVLLKHGADVDAADVYGFT--PLHLAAMTGHL--EIVEVL------- 99
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ D + LH+A EGH +IV+ LL GA V+ +D+
Sbjct: 100 LKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDK 144
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ D + LH+A EGH +IV+ LL GA V+ +D+ T
Sbjct: 103 GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ D + LH+A GH +IV+ LL +GA V D T L
Sbjct: 36 NGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPL 84
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ D + LH+A GH +IV+ LL +GA V D
Sbjct: 36 NGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
L GAD+ D + LH+A GH +IV+ LL GA V+ D
Sbjct: 67 LKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFD 110
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D+ R+ LH+A GH +IV+ LL GA V+ +D+ T
Sbjct: 67 LKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ D+ R+ LH+A GH +IV+ LL GA V+ +D+
Sbjct: 67 LKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ GAD++ D + LH+A GH +IV+ LL +GA V+ D
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ GAD++ D + LH+A GH +IV+ LL +GA V+ D
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L GAD++ D D + LH+A GH +IV+ LL +GA V+ +D+
Sbjct: 67 LKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK 111
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ D D + LH+A GH +IV+ LL +GA V+ +D+
Sbjct: 67 LKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK 111
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GAD++ D + LH+A H +IV+ LL +GA V+ D
Sbjct: 37 GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ D + LH+A H +IV+ LL +GA V+ D
Sbjct: 37 GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 358 HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLN 417
HL LI +L EI + L L GAD++ D + LH+A GH +IV+ LL +
Sbjct: 85 HLAALIGHL--EIVEVL-------LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 418 GASVHEKDR 426
GA V+ +D+
Sbjct: 136 GADVNAQDK 144
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ GAD++ DA + LH+A GH +IV+ LL +GA V+ D
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ GAD++ DA + LH+A GH +IV+ LL +GA V+ D
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L GAD++ D + LH+A GH +IV+ LL +GA V+ +D+
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
L GAD++ D + LH+A GH +IV+ LL +GA V+ D
Sbjct: 67 LKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD++ D + LH+A GH +IV+ LL +GA V+ D
Sbjct: 67 LKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 358 HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLN 417
HL LI +L EI + L L GAD++ D + LH+A GH +IV+ LL +
Sbjct: 85 HLAALIGHL--EIVEVL-------LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 418 GASVHEKDR 426
GA V+ +D+
Sbjct: 136 GADVNAQDK 144
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ GAD++ DA + LH+A GH +IV+ LL +GA V+ D
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ GAD++ DA + LH+A GH +IV+ LL +GA V+ D
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L GAD++ D + LH+A GH +IV+ LL +GA V+ +D+
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
L GAD++ D + LH+A GH +IV+ LL +GA V+ D
Sbjct: 67 LKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD++ D + LH+A GH +IV+ LL +GA V+ D
Sbjct: 67 LKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 11/79 (13%)
Query: 206 LPFAL--NSSLPQE--ITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKY 261
LP AL +SSL E + Q++ +++ D S+ + + +ALH A C GHT+IVK+
Sbjct: 36 LPLALLLDSSLEGEFDLVQRI-------IYEVDDPSLPNDEGITALHNAVCAGHTEIVKF 88
Query: 262 LLLNGASVHEKDRVQLTVL 280
L+ G +V+ D T L
Sbjct: 89 LVQFGVNVNAADSDGWTPL 107
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+++ D S+ + + +ALH A C GHT+IVK+L+ G +V+ D
Sbjct: 57 IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
GAD++ KD + + LH+A GH ++VK LL GA V +D+
Sbjct: 47 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ KD + + LH+A GH ++VK LL GA V +D+
Sbjct: 47 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 358 HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLN 417
H+ + + +LP I + L L +GA ++ + + LH+A GHT++ KYLL N
Sbjct: 19 HVASFMGHLP--IVKNL-------LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 69
Query: 418 GASVHEKDR 426
A V+ K +
Sbjct: 70 KAKVNAKAK 78
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L +GA ++ + + LH+A GHT++ KYLL N A V+ K +
Sbjct: 34 LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK 78
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 83/226 (36%), Gaps = 57/226 (25%)
Query: 202 PQGALPF--ALNSSLPQEITQKLD-IDGVPSLFQ-GADLSIKDADQRSALHIACCEGHTD 257
P+G P A N P I K + ++ SL Q G + + + LH+A EGH +
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259
Query: 258 IVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKSTEGGYDLVGAVVRLLNLTTEKDKDD 317
+V LL A+ + ++ LT L + E G+ V V
Sbjct: 260 MVALLLSKQANGNLGNKSGLTPLHLVAQE---------GHVPVADV-------------- 296
Query: 318 LRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDID 377
+++ VM RM GY V N L +
Sbjct: 297 --------LIKHGVMVDATTRM----GYTPLHVASHYGNIKLVKFL-------------- 330
Query: 378 GVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHE 423
L AD++ K S LH A +GHTDIV LL NGAS +E
Sbjct: 331 ----LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 33/205 (16%)
Query: 234 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS-------------VHEKDRVQLTVL 280
A ++ K D ++ LH A GHT++VK LL N A+ + ++ TVL
Sbjct: 71 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 281 TNIRGELTSEKSTEGGYDLVGAV-----VRLLNLTTEKDKDDL---RSVLFPAMLQSAVM 332
+ E + T+ G+ + VR+ L E+D ++ L P L AV
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP--LHVAVH 188
Query: 333 TGDLKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLD-IDGVPSLFQ-GADLSI 390
+L + ++ +PH P I K + ++ SL Q G +
Sbjct: 189 HNNLD--------IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA 240
Query: 391 KDADQRSALHIACCEGHTDIVKYLL 415
+ + LH+A EGH ++V LL
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLL 265
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 386 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 420
A ++ K D ++ LH A GHT++VK LL N A+
Sbjct: 71 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 105
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 37/203 (18%)
Query: 245 SALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKSTEGGYDLVGAVV 304
+ LH+A GH IVK LL GAS + ++N++ E + G+ V +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPN---------VSNVKVETPLHMAARAGHTEVAKYL 66
Query: 305 RLLNLT--TEKDKDDLRSVLFPAMLQSAVMTGDL------KRMEEIKGYVSNIVYEFSMN 356
L N K KDD + A + M L + G+ ++ +
Sbjct: 67 -LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP--LHIAARE 123
Query: 357 PHLTTLISNLPQEITQK-LDIDGVPSLFQGAD---------LSIKDADQRSA-------L 399
H+ T+++ L +E +Q + G L A L +DA +A L
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPL 183
Query: 400 HIACCEGHTDIVKYLLLNGASVH 422
H+A + DIVK LL G S H
Sbjct: 184 HVAVHHNNLDIVKLLLPRGGSPH 206
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ KD + + LH+A GH +IV+ LL GA V+ +D+ T
Sbjct: 100 LKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ KD + + LH+A GH +IV+ LL GA V+ +D+
Sbjct: 100 LKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDK 144
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D + LH+A GH +IV+ LL NGA V+ KD +T L
Sbjct: 67 LKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPL 117
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD++ D + LH+A GH +IV+ LL NGA V+ KD
Sbjct: 67 LKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ GAD++ D + LH+A GH +IV+ LL NGA V+ D + T L
Sbjct: 34 MANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPL 84
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ GAD++ D + LH+A GH +IV+ LL NGA V+ D
Sbjct: 34 MANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTV--LTNIRGEL 287
GAD++ D D + LH+A GH +IV+ LL GA V+ +D +T L IRG L
Sbjct: 37 GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHL 93
Score = 35.0 bits (79), Expect = 0.080, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
GAD++ +D + LH+A GH +IV+ LL +GA V+ +D+
Sbjct: 70 GADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDK 111
Score = 35.0 bits (79), Expect = 0.080, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ +D + LH+A GH +IV+ LL +GA V+ +D+
Sbjct: 70 GADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDK 111
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ D D + LH+A GH +IV+ LL GA V+ +D
Sbjct: 37 GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 191 RMEEIKGYVKRPQGA----LPFALNSSLPQEITQKLDIDGVPSLFQ-GADLSIKDADQRS 245
R++ +K Y+ + GA L LNS+ T++ + V L + GAD S+ D + S
Sbjct: 54 RIDLVKYYISK--GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS 111
Query: 246 ALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+H+A GHT IV YL+ G V D+ +T L
Sbjct: 112 CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD S+ D + S +H+A GHT IV YL+ G V D+
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ 140
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ KD + L++A GH +IV+ LL NGA V+ D + T L
Sbjct: 37 GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPL 84
Score = 35.4 bits (80), Expect = 0.069, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ KD + L++A GH +IV+ LL NGA V+ D
Sbjct: 37 GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L GAD++ DA + LH+A GH +I + LL +GA V+ +D+
Sbjct: 67 LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ DA + LH+A GH +I + LL +GA V+ +D+
Sbjct: 67 LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
L GAD + + SAL +AC +G+TDIVK LL G V+E D
Sbjct: 72 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 115
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD + + SAL +AC +G+TDIVK LL G V+E D
Sbjct: 72 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 115
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+++ D S+ + + +ALH A C GHT+IVK+L+ G +V+ D T L
Sbjct: 57 IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+++ D S+ + + +ALH A C GHT+IVK+L+ G +V+ D
Sbjct: 57 IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
L GAD + + SAL +AC +G+TDIVK LL G V+E D
Sbjct: 56 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD + + SAL +AC +G+TDIVK LL G V+E D
Sbjct: 56 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
L GAD + + SAL +AC +G+TDIVK LL G V+E D
Sbjct: 54 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 97
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD + + SAL +AC +G+TDIVK LL G V+E D
Sbjct: 54 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 97
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L GAD++ +D R+ LH+A GH +IV+ LL GA V+ +D+
Sbjct: 67 LKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ +D R+ LH+A GH +IV+ LL GA V+ +D+
Sbjct: 67 LKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GAD++ D + LH+A GH +IV+ LL +GA V+ +D
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ D + LH+A GH +IV+ LL +GA V+ +D
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
QG ++I AD S LH AC GH VK LL +GA V+ T L N
Sbjct: 81 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN--------A 132
Query: 292 STEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVY 351
G +D V +++ + + + + DL S + A G ++ + + Y NI +
Sbjct: 133 CVSGSWDCVNLLLQ--HGASVQPESDLASP-----IHEAARRGHVECVNSLIAYGGNIDH 185
Query: 352 EFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALH 400
+ S HL T + L E Q+ + + L GAD++ + Q S LH
Sbjct: 186 KIS---HLGTPLY-LACENQQRACVKKL--LESGADVN-QGKGQDSPLH 227
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASV 269
L GA ++ AD + L AC G D V LL +GASV
Sbjct: 112 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 353 FSMNP-HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIV 411
F P HL +L EI + L L GAD++ D+D + LH+A G+ +IV
Sbjct: 79 FGYTPLHLAAYWGHL--EIVEVL-------LKNGADVNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 412 KYLLLNGASVHEKDR 426
+ LL +GA V+ +D+
Sbjct: 130 EVLLKHGADVNAQDK 144
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D+D + LH+A G+ +IV+ LL +GA V+ +D+ T
Sbjct: 100 LKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD+ D + LH+A GH +IV+ LL NGA V+ D +T L
Sbjct: 67 LKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPL 117
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD+ D + LH+A GH +IV+ LL NGA V+ D
Sbjct: 67 LKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMD 110
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ GAD++ D + LH+A GH +IV+ LL +GA V D T L
Sbjct: 34 MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPL 84
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ GAD++ D + LH+A GH +IV+ LL +GA V D
Sbjct: 34 MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 36.2 bits (82), Expect = 0.033, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L GAD++ D R+ LH+A GH +IV+ LL GA V+ +D+
Sbjct: 67 LKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 36.2 bits (82), Expect = 0.033, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ D R+ LH+A GH +IV+ LL GA V+ +D+
Sbjct: 67 LKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GAD++ D + LH+A GH +IV+ LL +GA V+ D
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ D + LH+A GH +IV+ LL +GA V+ D
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D + + LH+A GH +IV+ LL +GA V+ +D+ T
Sbjct: 100 LKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ GAD++ D + LH+A GH +IV+ LL NGA V+ D + +T L
Sbjct: 34 MANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPL 84
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D+ + LH+A GH ++V+ LL NGA V+ D T L
Sbjct: 67 LKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPL 117
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ D + + LH+A GH +IV+ LL +GA V+ +D+
Sbjct: 100 LKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDK 144
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ D+ + LH+A GH ++V+ LL NGA V+ D
Sbjct: 67 LKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDH 111
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ GAD++ D + LH+A GH +IV+ LL NGA V+ D
Sbjct: 34 MANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
QG ++I AD S LH AC GH VK LL +GA V+ T L N
Sbjct: 25 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN--------A 76
Query: 292 STEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVY 351
G +D V +++ + + + + DL S + A G ++ + + Y NI +
Sbjct: 77 CVSGSWDCVNLLLQ--HGASVQPESDLASP-----IHEAARRGHVECVNSLIAYGGNIDH 129
Query: 352 EFSMNPHLTT 361
+ S HL T
Sbjct: 130 KIS---HLGT 136
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASV 269
L GA ++ AD + L AC G D V LL +GASV
Sbjct: 56 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 95
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTS 289
L GAD+ KD LH AC GH ++ + L+ +GA V+ D + T L
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL--------H 113
Query: 290 EKSTEGGYDLVGAVVRLLNLTTEKDKD 316
E + +G Y++ +++ T+K++D
Sbjct: 114 EAAAKGKYEICKLLLQHGADPTKKNRD 140
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 217 EITQKLDIDGVPSLFQGADLSIKDADQRSA--LHIACCEGHTDIVKYLLLNGASVHEKDR 274
E + D++ V L ++ +D + R + LH A +V+YLL +GA VH KD+
Sbjct: 14 EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 275 VQLTVLTN 282
L L N
Sbjct: 74 GGLVPLHN 81
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 369 EITQKLDIDGVPSLFQGADLSIKDADQRSA--LHIACCEGHTDIVKYLLLNGASVHEKDR 426
E + D++ V L ++ +D + R + LH A +V+YLL +GA VH KD+
Sbjct: 14 EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD+ KD LH AC GH ++ + L+ +GA V+ D
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTS 289
L GAD+ KD LH AC GH ++ + L+ +GA V+ D + T L
Sbjct: 64 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL--------H 115
Query: 290 EKSTEGGYDLVGAVVRLLNLTTEKDKD 316
E + +G Y++ +++ T+K++D
Sbjct: 116 EAAAKGKYEICKLLLQHGADPTKKNRD 142
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 217 EITQKLDIDGVPSLFQGADLSIKDADQRSA--LHIACCEGHTDIVKYLLLNGASVHEKDR 274
E + D++ V L ++ +D + R + LH A +V+YLL +GA VH KD+
Sbjct: 16 EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 275 VQLTVLTN 282
L L N
Sbjct: 76 GGLVPLHN 83
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 369 EITQKLDIDGVPSLFQGADLSIKDADQRSA--LHIACCEGHTDIVKYLLLNGASVHEKDR 426
E + D++ V L ++ +D + R + LH A +V+YLL +GA VH KD+
Sbjct: 16 EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD+ KD LH AC GH ++ + L+ +GA V+ D
Sbjct: 64 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 107
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTS 289
L GAD+ KD LH AC GH ++ + L+ +GA V+ D + T L
Sbjct: 66 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL--------H 117
Query: 290 EKSTEGGYDLVGAVVRLLNLTTEKDKD 316
E + +G Y++ +++ T+K++D
Sbjct: 118 EAAAKGKYEICKLLLQHGADPTKKNRD 144
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 204 GALPFALNSSLPQ----EITQKLDIDGVPSLFQGADLSIKDADQRSA--LHIACCEGHTD 257
GA+ +L +S E + D++ V L ++ +D + R + LH A
Sbjct: 1 GAMGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS 60
Query: 258 IVKYLLLNGASVHEKDRVQLTVLTN 282
+V+YLL +GA VH KD+ L L N
Sbjct: 61 VVEYLLQHGADVHAKDKGGLVPLHN 85
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 369 EITQKLDIDGVPSLFQGADLSIKDADQRSA--LHIACCEGHTDIVKYLLLNGASVHEKDR 426
E + D++ V L ++ +D + R + LH A +V+YLL +GA VH KD+
Sbjct: 18 EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L GAD+ KD LH AC GH ++ + L+ +GA V+ D
Sbjct: 66 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 109
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ D + LH+A +GH +IV+ LL GA V+ +D+ T
Sbjct: 103 GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ D + LH+A +GH +IV+ LL GA V+ +D+
Sbjct: 103 GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 353 FSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVK 412
F + P L +++N EI + L L AD++ D + LH+A GH +IV+
Sbjct: 46 FGITP-LHLVVNNGHLEIIEVL-------LKYAADVNASDKSGWTPLHLAAYRGHLEIVE 97
Query: 413 YLLLNGASVHEKD 425
LL GA V+ D
Sbjct: 98 VLLKYGADVNAMD 110
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 234 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
AD++ D + LH+A GH +IV+ LL GA V+ D T L
Sbjct: 71 ADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPL 117
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTV--LTNIRGEL 287
GAD++ D + LH+ GH +I++ LL A V+ D+ T L RG L
Sbjct: 36 NGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHL 93
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ D + LH+ GH +I++ LL A V+ D+
Sbjct: 36 NGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDK 78
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 34.7 bits (78), Expect = 0.093, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L GAD++ DA + LH+ GH +IV+ LL +GA V+ +D+
Sbjct: 67 LKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDK 111
Score = 34.7 bits (78), Expect = 0.093, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ DA + LH+ GH +IV+ LL +GA V+ +D+
Sbjct: 67 LKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDK 111
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ +D + LH+A H +IV+ LL NGA V+ D + T L
Sbjct: 37 GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPL 84
Score = 32.3 bits (72), Expect = 0.49, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ +D + LH+A H +IV+ LL NGA V+ D
Sbjct: 37 GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ GAD++ +D + LH+A GH +IV+ LL NGA V+ D
Sbjct: 34 MANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ GAD++ +D + LH+A GH +IV+ LL NGA V+ D
Sbjct: 34 MANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ D + LH+A GH +IV+ LL GA V+ +D+ T
Sbjct: 103 GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ D + LH+A GH +IV+ LL GA V+ D + T L
Sbjct: 67 LKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPL 117
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ D + LH+A GH +IV+ LL GA V+ +D+
Sbjct: 103 GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDK 144
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 358 HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLN 417
HL + +L EI + L L GAD++ D + LH+A GH +IV+ LL
Sbjct: 52 HLAARVGHL--EIVEVL-------LKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 418 GASVHEKD 425
GA V+ D
Sbjct: 103 GADVNADD 110
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 217 EITQKLDIDGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNG 266
E + ++ V L + GA + KDA+ + LH+A +GH ++V+YLL NG
Sbjct: 50 EAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 369 EITQKLDIDGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNG 418
E + ++ V L + GA + KDA+ + LH+A +GH ++V+YLL NG
Sbjct: 50 EAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 74/203 (36%), Gaps = 49/203 (24%)
Query: 235 DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKSTE 294
+ ++ ++RS LH A GH DI L+ GA++ Q T L E +
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLM--------EAAEN 54
Query: 295 GGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYEFS 354
+ V +++ L KD + + A KG+ + Y
Sbjct: 55 NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAK----------------KGHYEVVQY--- 95
Query: 355 MNPHLTTLISNLPQEITQKLDIDGVPSLF---------------QGADLSIKDADQRSAL 399
L+SN ++ + D P ++ +G+D++I+D ++ L
Sbjct: 96 -------LLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICL 148
Query: 400 HIACCEGHTDIVKYLLLNGASVH 422
H A G DI + LL +H
Sbjct: 149 HWAAFSGCVDIAEILLAAKCDLH 171
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVH 270
L +G+D++I+D ++ LH A G DI + LL +H
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH 171
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKS 292
GA++ DQR+ L A H + VKYL+ GA V KD T L L ++K
Sbjct: 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL-----HLAAKK- 87
Query: 293 TEGGYDLV 300
G Y++V
Sbjct: 88 --GHYEVV 93
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 221 KLDIDGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASV 269
K DI V L Q G+D ++KD + LH AC GH +V+ LL + A V
Sbjct: 20 KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 373 KLDIDGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASV 421
K DI V L Q G+D ++KD + LH AC GH +V+ LL + A V
Sbjct: 20 KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 245 SALHIACCEGHTDIVKYLLLNGAS 268
S LH A GH DIVK LL GAS
Sbjct: 78 SPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 397 SALHIACCEGHTDIVKYLLLNGAS 420
S LH A GH DIVK LL GAS
Sbjct: 78 SPLHDAAKNGHVDIVKLLLSYGAS 101
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 358 HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLN 417
HL ++ +L EI + L L GAD++ R+ LH+A H +IV+ LL +
Sbjct: 52 HLAAMLGHL--EIVEVL-------LKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKH 102
Query: 418 GASVHEKDR 426
GA V+ +D+
Sbjct: 103 GADVNAQDK 111
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVH 270
GAD++ D + LH+A GH +IV+ LL NGA V+
Sbjct: 37 GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVH 422
GAD++ D + LH+A GH +IV+ LL NGA V+
Sbjct: 37 GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Score = 33.1 bits (74), Expect = 0.30, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L GAD++ R+ LH+A H +IV+ LL +GA V+ +D+
Sbjct: 67 LKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDK 111
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
GAD+++ D +H+A EGHT +V +L + +H +D LT L EL ++
Sbjct: 96 HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPL-----ELALQR 149
Query: 292 STEGGYDLV 300
G DLV
Sbjct: 150 ---GAQDLV 155
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD+++ D +H+A EGHT +V +L + +H +D
Sbjct: 96 HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRD 136
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
GAD+++ D +H+A EGHT +V +L + +H +D LT L EL ++
Sbjct: 90 HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPL-----ELALQR 143
Query: 292 STEGGYDLV 300
G DLV
Sbjct: 144 ---GAQDLV 149
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD+++ D +H+A EGHT +V +L + +H +D
Sbjct: 90 HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRD 130
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 231 FQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 268
FQ AD++I+D + LH+A EGH +V++L+ + AS
Sbjct: 92 FQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 383 FQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 420
FQ AD++I+D + LH+A EGH +V++L+ + AS
Sbjct: 92 FQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 231 FQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 268
FQ AD++I+D + LH+A EGH +V++L+ + AS
Sbjct: 92 FQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 383 FQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 420
FQ AD++I+D + LH+A EGH +V++L+ + AS
Sbjct: 92 FQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 231 FQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 268
FQ AD++I+D + LH+A EGH +V++L+ + AS
Sbjct: 92 FQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 383 FQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 420
FQ AD++I+D + LH+A EGH +V++L+ + AS
Sbjct: 92 FQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 231 FQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 268
FQ AD++I+D + LH+A EGH +V++L+ + AS
Sbjct: 92 FQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 383 FQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 420
FQ AD++I+D + LH+A EGH +V++L+ + AS
Sbjct: 92 FQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 234 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 268
AD++I+D + LH+A EGH +V++L+ + AS
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 386 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 420
AD++I+D + LH+A EGH +V++L+ + AS
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 235 DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
DL+ D S LH AC EG + +V+ L++ GA ++ +R
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR 70
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 387 DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
DL+ D S LH AC EG + +V+ L++ GA ++ +R
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR 70
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA---SVHEKDRVQLTVLTNIRGE 286
+ +GA +++ + + LH+A GH DIV+ LL A +V+E V L +
Sbjct: 59 IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118
Query: 287 LTSEKSTEGGYDLV--GAVVRLLN----LTTEKDKDDLRSVL 322
+E DLV GA+V + N + +K K LR +L
Sbjct: 119 QVAE-------DLVANGALVSICNKYGEMPVDKAKAPLRELL 153
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASV 421
+ +GA +++ + + LH+A GH DIV+ LL A +
Sbjct: 59 IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 112 TKLSYVLSKSDWTLEKKKTIMLTNIRGELTSEKSTEGGYDLVGAVVRLLNLTTEKDKDDL 171
T L Y +S +++ + ++ +L + G +K GY + + L L T K +DD+
Sbjct: 113 TALHYSVSHANFPVVQQ---LLDS--GVCKVDKQNRAGY----SPIMLTALATLKTQDDI 163
Query: 172 RSVLFPAMLQSAVMTGDLKRMEEIKGYVKRP-QGALPFALNSSLPQEITQKLDIDGVPSL 230
+VL L R+ I + Q AL A++ +D V +L
Sbjct: 164 ETVL------------QLFRLGNINAKASQAGQTALMLAVSHG---------RVDVVKAL 202
Query: 231 FQG-ADLSIKDADQRSALHIACCEGHTDIVKYLL 263
AD++++D D +AL AC GH +I LL
Sbjct: 203 LACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 376 IDGVPSLFQG-ADLSIKDADQRSALHIACCEGHTDIVKYLL 415
+D V +L AD++++D D +AL AC GH +I LL
Sbjct: 196 VDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 235 DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
DL+ D S LH AC EG + +V+ L++ GA ++ +R
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR 65
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 387 DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
DL+ D S LH AC EG + +V+ L++ GA ++ +R
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR 65
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA---SVHEKDRVQLTVLTNIRGE 286
+ +GA +++ + + LH+A GH DIV+ LL A +V+E V L +
Sbjct: 54 IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 113
Query: 287 LTSEKSTEGGYDLV--GAVVRLLN----LTTEKDKDDLRSVL 322
+E DLV GA+V + N + +K K LR +L
Sbjct: 114 QVAE-------DLVANGALVSICNKYGEMPVDKAKAPLRELL 148
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASV 421
+ +GA +++ + + LH+A GH DIV+ LL A +
Sbjct: 54 IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
GAD++ D+ +H+A EGH+ +V +L + +H +D LT L EL ++
Sbjct: 98 HGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPL-----ELARQR 151
Query: 292 STEGGYDLV 300
+ D++
Sbjct: 152 GAQNLMDIL 160
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
L QGA +++DA S +H A G D +K L+ +GA V+ D
Sbjct: 63 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALD 106
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L QGA +++DA S +H A G D +K L+ +GA V+ D
Sbjct: 63 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALD 106
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTV 279
+G++ +D D ++ + +A EG ++V YL+ GASV D T
Sbjct: 302 KGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTA 349
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASV 421
+G++ +D D ++ + +A EG ++V YL+ GASV
Sbjct: 302 KGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASV 339
>pdb|2HQ0|A Chain A, Structure Of Rafe From Streptococcus Pneumoniae
pdb|2I58|A Chain A, Crystal Structure Of Rafe From Streptococcus Pneumoniae
Complexed With Raffinose
pdb|2I58|B Chain B, Crystal Structure Of Rafe From Streptococcus Pneumoniae
Complexed With Raffinose
Length = 388
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 19/147 (12%)
Query: 141 TSEKSTEG-GY-DLVGAVVR------------LLNLTTEKDKDDLRSVLFPAMLQSAVMT 186
+ +K+ EG GY D++GA R + + +K + + + P + +T
Sbjct: 216 SKQKNWEGAGYTDVIGAFARGDVLMTPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLT 275
Query: 187 ---GDLKRMEEIKGYVKRPQGALPFALNSSLPQEITQKLDIDGVPSLFQGADLSIKDADQ 243
GDL I K P+ A F + P+ + + D+DG P+ +G + +D+
Sbjct: 276 VGAGDLAW--SISATTKHPKEANAFVEYMTRPEVMQKYYDVDGSPTAIEGVKQAGEDSPL 333
Query: 244 RSALHIACCEGHTDIVKYLLLNGASVH 270
A + H ++ + A H
Sbjct: 334 AGMTEYAFTDRHLVWLQQYWTSEADFH 360
>pdb|2HEU|A Chain A, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
pdb|2HEU|B Chain B, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
pdb|2HEU|C Chain C, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
Length = 401
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 19/147 (12%)
Query: 141 TSEKSTEG-GY-DLVGAVVR------------LLNLTTEKDKDDLRSVLFPAMLQSAVMT 186
+ +K+ EG GY D++GA R + + +K + + + P + +T
Sbjct: 229 SKQKNWEGAGYTDVIGAFARGDVLMTPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLT 288
Query: 187 ---GDLKRMEEIKGYVKRPQGALPFALNSSLPQEITQKLDIDGVPSLFQGADLSIKDADQ 243
GDL I K P+ A F + P+ + + D+DG P+ +G + +D+
Sbjct: 289 VGAGDLAW--SISATTKHPKEANAFVEYMTRPEVMQKYYDVDGSPTAIEGVKQAGEDSPL 346
Query: 244 RSALHIACCEGHTDIVKYLLLNGASVH 270
A + H ++ + A H
Sbjct: 347 AGMTEYAFTDRHLVWLQQYWTSEADFH 373
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
GAD++ D+ +H+A EGH+ +V +L + +H +D LT L EL ++
Sbjct: 96 HGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPL-----ELARQR 149
Query: 292 STEGGYDLV 300
+ D++
Sbjct: 150 GAQNLMDIL 158
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
L QGA +++DA S +H A G D +K L+ +GA V+ D
Sbjct: 61 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALD 104
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L QGA +++DA S +H A G D +K L+ +GA V+ D
Sbjct: 61 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALD 104
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 244 RSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
R LH A G +I+++LLL GA ++ D+ +T L
Sbjct: 41 RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 19/94 (20%)
Query: 183 AVMTGDLKRMEEIKGYVKRPQ--------GALPFALNSSLPQ-EITQKLDIDGVPSLFQG 233
A+ GDL +E+K YV + + G P + Q EI + L L +G
Sbjct: 14 ALKNGDL---DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL-------LLKG 63
Query: 234 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
AD++ D + L A EGH VK LL GA
Sbjct: 64 ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 330 AVMTGDLKRMEEIKGYVS-----NIVYEFSMNP-HLTTLISNLPQEITQKLDIDGVPSLF 383
A+ GDL +E+K YV+ N E P H L EI + L L
Sbjct: 14 ALKNGDL---DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQL--EILEFL-------LL 61
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 419
+GAD++ D + L A EGH VK LL GA
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
>pdb|3AVR|A Chain A, Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H3K27ME3
PEPTIDE, N-Oxyalylglycine, And Ni(Ii)
pdb|3AVS|A Chain A, Catalytic Fragment Of UtxKDM6A BOUND WITH
N-Oxyalylglycine, And Ni(Ii)
Length = 531
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 20 DLLELLKSANERGVIIVNCSQCSRGTTSNI 49
DLL + +N R IV+C C+R T+ N+
Sbjct: 470 DLLFVTNESNSRKTYIVHCQDCARKTSGNL 499
>pdb|3HZ8|A Chain A, Crystal Structure Of The Oxidized T176v Dsba1 Mutant
Length = 193
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 216 QEITQKLDIDGVPSLFQGADLSIKDADQRSALH 248
QE+T+ IDGVP++ G ++ AD S ++
Sbjct: 144 QELTETFQIDGVPTVIVGGKYKVEFADWESGMN 176
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 368 QEITQKLDIDGVPSLFQGADLSIKDADQRSALH 400
QE+T+ IDGVP++ G ++ AD S ++
Sbjct: 144 QELTETFQIDGVPTVIVGGKYKVEFADWESGMN 176
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 183 AVMTGDLKRMEEIKGYVKRPQ--------GALPFALNSSLPQ-EITQKLDIDGVPSLFQG 233
A+ GDL +E+K YV + + G P + Q EI + L L +G
Sbjct: 9 ALKNGDL---DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL-------LLKG 58
Query: 234 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
AD++ D + L A EGH VK LL GA K LT L
Sbjct: 59 ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 330 AVMTGDLKRMEEIKGYVS-----NIVYEFSMNP-HLTTLISNLPQEITQKLDIDGVPSLF 383
A+ GDL +E+K YV+ N E P H L EI + L L
Sbjct: 9 ALKNGDL---DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQL--EILEFL-------LL 56
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 419
+GAD++ D + L A EGH VK LL GA
Sbjct: 57 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYL 262
GAD SIKD R+A+ A +G+T+I K L
Sbjct: 168 GADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYL 414
GAD SIKD R+A+ A +G+T+I K L
Sbjct: 168 GADQSIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|3GGG|D Chain D, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
pdb|3GGG|A Chain A, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
pdb|3GGO|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGO|B Chain B, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGO|C Chain C, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGO|D Chain D, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGP|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGP|B Chain B, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGP|C Chain C, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGP|D Chain D, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGG|B Chain B, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
pdb|3GGG|C Chain C, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
Length = 314
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 16 SNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYETGKSLTDVGVITGYDMTPESALTK 75
S+ +++++LKS + + V+IV ++ +G G I GYD+ PES
Sbjct: 19 SHMKNIIKILKSLSMQNVLIVGVGFMGGSFAKSLRRSGFK----GKIYGYDINPESISKA 74
Query: 76 LSY-VLSKSDWTLEKKKTSLTDVGVITGYDMTPESALTKLSYVLSK 120
+ ++ + ++ K + D +++ T KLSY+LS+
Sbjct: 75 VDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSE 120
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 225 DGVPSLFQGADLSIKDADQ--RSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTN 282
D V LF ++ + ++ +ALH A +G+ DIV+ LL GA T L N
Sbjct: 120 DIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR---------TDLRN 170
Query: 283 IRGELTSEKST 293
I +L + +T
Sbjct: 171 IEKKLAFDXAT 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,993,980
Number of Sequences: 62578
Number of extensions: 487281
Number of successful extensions: 1848
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1333
Number of HSP's gapped (non-prelim): 496
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)