RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15713
(426 letters)
>gnl|CDD|181876 PRK09461, ansA, cytoplasmic asparaginase I; Provisional.
Length = 335
Score = 110 bits (276), Expect = 5e-27
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 43/142 (30%)
Query: 2 NGVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTSNI--YETGKSLTDV 59
+IL++YG GN P N A LL+ LK A+ERG+++VN +QC G N+ Y TG +L
Sbjct: 235 KALILRSYGVGNAPQNPA-LLQELKEASERGIVVVNLTQCMSGKV-NMGGYATGNALAHA 292
Query: 60 GVITGYDMTPESALTKLSYVLSKSDWTLEKKKTSLTDVGVITGYDMTPESALTKLSYVLS 119
GVI+G DMT E+ALTKL Y+LS+ +++
Sbjct: 293 GVISGADMTVEAALTKLHYLLSQ---------------------ELST------------ 319
Query: 120 KSDWTLEKKKTIMLTNIRGELT 141
E+ + M N+RGELT
Sbjct: 320 ------EEIRQAMQQNLRGELT 335
>gnl|CDD|214873 smart00870, Asparaginase, Asparaginase, found in various plant,
animal and bacterial cells. Asparaginase catalyses the
deamination of asparagine to yield aspartic acid and an
ammonium ion, resulting in a depletion of free
circulatory asparagine in plasma. The enzyme is
effective in the treatment of human malignant lymphomas,
which have a diminished capacity to produce asparagine
synthetase: in order to survive, such cells absorb
asparagine from blood plasma..- if Asn levels have been
depleted by injection of asparaginase, the lymphoma
cells die.
Length = 323
Score = 99.1 bits (248), Expect = 3e-23
Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDVGV 61
G++L+ G+GN P DLLE LK A ERG+ +V S+C G Y TG+ L GV
Sbjct: 238 GLVLEGTGAGNVPP---DLLEALKEALERGIPVVRTSRCLSGRVDPGYYATGRDLAKAGV 294
Query: 62 ITGYDMTPESALTKLSYVLSKSDWTLE 88
I+ D+TPE A KL L K E
Sbjct: 295 ISAGDLTPEKARIKLMLALGKGLDPEE 321
>gnl|CDD|216074 pfam00710, Asparaginase, Asparaginase.
Length = 318
Score = 97.2 bits (243), Expect = 1e-22
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDVGV 61
G++L+ +G+GN P LL+ LK A RG+ +V SQC G S Y TG+ L GV
Sbjct: 233 GIVLEGFGAGNVPP---ALLDALKEAVARGIPVVVASQCGSGRVSLGYYGTGRDLLKAGV 289
Query: 62 ITGYDMTPESALTKLSYVLSKS 83
I+ D+TPE A KL L +
Sbjct: 290 ISAGDLTPEKARIKLMLALGQG 311
>gnl|CDD|199207 cd08963, L-asparaginase_I, Type I (cytosolic) bacterial
L-asparaginase. Asparaginases (amidohydrolases, E.C.
3.5.1.1) are enzymes that catalyze the hydrolysis of
asparagine to aspartic acid and ammonia. In bacteria,
there are two classes of amidohydrolases. This model
represents type I L-asparaginases, which are highly
specific for asparagine and localized in the cytosol.
Type I L-asparaginase acts as a dimer. A conserved
threonine residue is thought to supply the nucleophile
hydroxy-group that attacks the amide bond. Many
bacterial L-asparaginases have both L-asparagine and
L-glutamine hydrolysis activities, to a different
degree, and some of them are annotated as
asparaginase/glutaminase. One example of an enzyme with
no L-glutaminase activity is the type I L-asparaginase
from Wolinella succinogenes.
Length = 316
Score = 96.1 bits (240), Expect = 3e-22
Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDVGV 61
G+IL+ +G+GN P + DLL L+ A RG +V +QC G + ++Y G++L + GV
Sbjct: 228 GLILEGFGAGNIPYDG-DLLAALEEATARGKPVVVTTQCPYGGSDLSVYAVGQALLEAGV 286
Query: 62 ITGYDMTPESALTKLSYVLSKSD 84
I G DMT E+A+ KL ++L ++D
Sbjct: 287 IPGGDMTTEAAVAKLMWLLGQTD 309
>gnl|CDD|223330 COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase
subunit D [Amino acid transport and metabolism /
Translation, ribosomal structure and biogenesis].
Length = 351
Score = 80.8 bits (200), Expect = 1e-16
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRG-TTSNIYETGKSLTDVGV 61
G++L+ GSGN L+E ++ A++RG+ +V S+C G +Y TG L G
Sbjct: 257 GLVLEGTGSGNVTP---ALIESIERASKRGIPVVYSSRCLSGRVNYGVYGTGNDLAPAGA 313
Query: 62 ITGYDMTPESALTKLSYVLSKSDWTLEKKKTSLT 95
I D+ PE A L L E+ S+
Sbjct: 314 IGAGDLNPEKARVLLMLALGNG-LDSEEVIQSIF 346
>gnl|CDD|129610 TIGR00519, asnASE_I, L-asparaginase, type I. Two related families
of asparaginase are designated type I and type II
according to the terminology in E. coli, which has both:
L-asparaginase I is a low-affinity enzyme found in the
cytoplasm, while L-asparaginase II is a high-affinity
secreted enzyme synthesized with a cleavable signal
sequence. This model describes L-asparaginases related
to type I of E. coli. Archaeal putative asparaginases
are of this type but contain an extra ~ 80 residues in a
conserved N-terminal region. These archaeal homologs are
included in this model.
Length = 336
Score = 79.9 bits (197), Expect = 2e-16
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQC-SRGTTSNIYETGKSLTDVGV 61
G++++ G G+ P N L+ L+ A++RGV++V +QC + N+Y TG+ L GV
Sbjct: 238 GIVIEGTGLGHAPQN---KLQELQEASDRGVVVVMTTQCLNGRVNMNVYSTGRRLLQAGV 294
Query: 62 ITGYDMTPESALTKLSYVLSKSDWTLEKKK 91
I G DM PE AL KL ++L + E KK
Sbjct: 295 IGGEDMLPEVALVKLMWLLGQYSDPEEAKK 324
>gnl|CDD|199206 cd08962, GatD, GatD subunit of archaeal Glu-tRNA amidotransferase.
GatD is involved in the alternative synthesis of
Gln-tRNA(Gln) in archaea via the transamidation of
incorrectly charged Glu-tRNA(Gln). GatD is active as a
dimer, and it provides the amino group required for this
reaction. GatD is related to bacterial L-asparaginases
(amidohydrolases), which catalyze the hydrolysis of
asparagine to aspartic acid and ammonia. This CD spans
both the L-asparaginase_like domain and an N-terminal
supplementary domain.
Length = 402
Score = 73.8 bits (182), Expect = 3e-14
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDVGV 61
G++++ G G+ DL+ +K A + G+ +V SQC G + N+Y TG+ L GV
Sbjct: 310 GIVIEGTGLGHVSE---DLIPSIKKAIDDGIPVVMTSQCIYGRVNLNVYSTGRELLKAGV 366
Query: 62 ITGYDMTPESALTKLSYVLSKSDWTLEKKKTSLTD 96
I G DM PE+A KL +VL +D E +K LT+
Sbjct: 367 IPGEDMLPETAYVKLMWVLGNTDDLEEVRKLMLTN 401
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 68.2 bits (167), Expect = 5e-14
Identities = 48/181 (26%), Positives = 69/181 (38%), Gaps = 59/181 (32%)
Query: 238 IKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKSTEGGY 297
+D D R+ LH+A GH ++VK LL NGA V+ KD T
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTP------------------ 43
Query: 298 DLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEI--KGYVSNIVYEFSM 355
L A G L+ ++ + KG N +
Sbjct: 44 -----------------------------LHLAAKNGHLEIVKLLLEKGADVNARDKDGN 74
Query: 356 NP-HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYL 414
P HL NL ++ + L L GAD++ +D D R+ LH+A GH ++VK L
Sbjct: 75 TPLHLAARNGNL--DVVKLL-------LKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125
Query: 415 L 415
L
Sbjct: 126 L 126
Score = 57.8 bits (140), Expect = 2e-10
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD++ KD D R+ LH+A GH +IVK LL GA V+ +D+ T L
Sbjct: 27 LENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPL 77
Score = 55.9 bits (135), Expect = 1e-09
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ +D D + LH+A G+ D+VK LL +GA V+ +D+ T L
Sbjct: 63 GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPL 110
Score = 55.1 bits (133), Expect = 2e-09
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GAD++ KD D R+ LH+A GH +IVK LL GA V+ +D+
Sbjct: 27 LENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDK 71
Score = 53.5 bits (129), Expect = 6e-09
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 327 LQSAVMTGDLKRMEEI--KGYVSNIVYEFSMNP-HLTTLISNLPQEITQKLDIDGVPSLF 383
L A G L+ ++ + G N P HL +L EI + L L
Sbjct: 11 LHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHL--EIVKLL-------LE 61
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+GAD++ +D D + LH+A G+ D+VK LL +GA V+ +D+
Sbjct: 62 KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDK 104
Score = 48.5 bits (116), Expect = 3e-07
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 390 IKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+D D R+ LH+A GH ++VK LL NGA V+ KD
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN 38
Score = 42.8 bits (101), Expect = 4e-05
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLL 263
L GAD++ +D D R+ LH+A GH ++VK LL
Sbjct: 93 LKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|235245 PRK04183, PRK04183, glutamyl-tRNA(Gln) amidotransferase subunit D;
Validated.
Length = 419
Score = 69.5 bits (171), Expect = 6e-13
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 43/140 (30%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDVGV 61
G++++ G G+ + DL+ +K A + G+ +V SQC G + N+Y TG+ L GV
Sbjct: 315 GIVIEGTGLGHVST---DLIPSIKRATDDGIPVVMTSQCLYGRVNMNVYSTGRDLLKAGV 371
Query: 62 ITGYDMTPESALTKLSYVLSKSDWTLEKKKTSLTDVGVITGYDMTPESALTKLSYVLSKS 121
I G DM PE A KL +VL +
Sbjct: 372 IPGEDMLPEVAYVKLMWVLGNTY------------------------------------- 394
Query: 122 DWTLEKKKTIMLTNIRGELT 141
LE+ + +MLTN+ GE+
Sbjct: 395 --DLEEVRELMLTNLAGEIN 412
>gnl|CDD|233752 TIGR02153, gatD_arch, glutamyl-tRNA(Gln) amidotransferase, subunit
D. This peptide is found only in the Archaea. It is
part of a heterodimer, with GatE (TIGR00134), that acts
as an amidotransferase on misacylated Glu-tRNA(Gln) to
produce Gln-tRNA(Gln). The analogous amidotransferase
found in bacteria is the GatABC system, although GatABC
homologs in the Archaea appear to act instead on
Asp-tRNA(Asn) [Protein synthesis, tRNA aminoacylation].
Length = 404
Score = 67.4 bits (165), Expect = 3e-12
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 1 MNGVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDV 59
G++++ G G+ D + +K A + GV +V SQC G + N+Y TG+ L
Sbjct: 300 YKGIVIEGTGLGHVSE---DWIPSIKRATDDGVPVVMTSQCLYGRVNLNVYSTGRELLKA 356
Query: 60 GVITGYDMTPESALTKLSYVLSKSDWTLEKKKTSLTD-VGVITGYD 104
GVI DM PE A KL +VL ++D E +K T+ G I
Sbjct: 357 GVIPCEDMLPEVAYVKLMWVLGQTDDLEEVRKMMRTNIAGEINERT 402
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 52.6 bits (127), Expect = 5e-09
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GAD++ KD D +ALH+A G+ +IVK LL +GA ++ KD
Sbjct: 50 HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 52.6 bits (127), Expect = 5e-09
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ KD D +ALH+A G+ +IVK LL +GA ++ KD
Sbjct: 50 HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 48.4 bits (116), Expect = 2e-07
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 223 DIDGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+++ V L + GAD+++ D D +ALH+A G+ +IVK LL +GA V+ KD+ T L
Sbjct: 9 NLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTAL 65
Score = 46.5 bits (111), Expect = 9e-07
Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 375 DIDGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+++ V L + GAD+++ D D +ALH+A G+ +IVK LL +GA V+ KD+
Sbjct: 9 NLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDK 59
Score = 36.5 bits (85), Expect = 0.003
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 247 LHIACCEGHTDIVKYLLLNGASVHEKD 273
LH+A G+ ++VK LL GA V+ D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD 27
Score = 36.5 bits (85), Expect = 0.003
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 399 LHIACCEGHTDIVKYLLLNGASVHEKD 425
LH+A G+ ++VK LL GA V+ D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD 27
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 47.9 bits (115), Expect = 6e-08
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 242 DQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
D + LH+A GH ++VK LL GA V+ +D+
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 47.9 bits (115), Expect = 6e-08
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 394 DQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
D + LH+A GH ++VK LL GA V+ +D+
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 51.0 bits (122), Expect = 8e-07
Identities = 43/189 (22%), Positives = 70/189 (37%), Gaps = 55/189 (29%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKS 292
D I D+ R+ LHIA +G+ D V LL + +VH +D T L N
Sbjct: 548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWN--------AI 599
Query: 293 TEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYE 352
+ + + + +++ DL L +A DL M+E+
Sbjct: 600 SAKHHKIFRILYHFASISDPHAAGDL--------LCTAAKRNDLTAMKEL---------- 641
Query: 353 FSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVK 412
+ Q L++D +D +AL +A E H D+V+
Sbjct: 642 -----------------LKQGLNVDS------------EDHQGATALQVAMAEDHVDMVR 672
Query: 413 YLLLNGASV 421
L++NGA V
Sbjct: 673 LLIMNGADV 681
Score = 44.1 bits (104), Expect = 1e-04
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASV 269
L QG ++ +D +AL +A E H D+V+ L++NGA V
Sbjct: 642 LKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV 681
Score = 39.1 bits (91), Expect = 0.005
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
D I D+ R+ LHIA +G+ D V LL + +VH +D
Sbjct: 548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD 588
>gnl|CDD|199208 cd08964, L-asparaginase_II, Type II (periplasmic) bacterial
L-asparaginase. Asparaginases (amidohydrolases, E.C.
3.5.1.1) are enzymes that catalyze the hydrolysis of
asparagine to aspartic acid and ammonia. In bacteria,
there are two classes of amidohydrolases. This model
represents type II L-asparaginases, which tend to be
highly specific for asparagine and localized to the
periplasm. They are potent antileukemic agents and have
been used in the treatment of acute lymphoblastic
leukemia (ALL), but not without severe side effects.
Tumor cells appear to have a heightened dependence on
exogenous L-aspartate, and depleting their surroundings
of L-aspartate may starve cancerous ALL cells. Type II
L-asparaginase acts as a tetramer, which is actually a
dimer of two tightly bound dimers. A conserved threonine
residue is thought to supply the nucleophile
hydroxy-group that attacks the amide bond. Many
bacterial L-asparaginases have both L-asparagine and
L-glutamine hydrolysis activities, to a different
degree, and some of them are annotated as
asparaginase/glutaminase.
Length = 319
Score = 49.4 bits (119), Expect = 1e-06
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYE--TGKSLTDVG 60
G+++ +G+GN P L+E L+ A +G+ +V S+ G +Y G L + G
Sbjct: 233 GIVIAGFGAGNVP---PALVEALERAVAKGIPVVRSSRVGNGRVLPVYGYGGGADLAEAG 289
Query: 61 VITGYDMTPESALTKLSYVLSK 82
I D++P+ A L L+
Sbjct: 290 AIFAGDLSPQKARILLMLALAA 311
>gnl|CDD|199205 cd00411, L-asparaginase_like, Bacterial L-asparaginases and related
enzymes. Asparaginases (amidohydrolases, E.C. 3.5.1.1)
are dimeric or tetrameric enzymes that catalyze the
hydrolysis of asparagine to aspartic acid and ammonia.
In bacteria, there are two classes of amidohydrolases,
one highly specific for asparagine and localized to the
periplasm (type II L-asparaginase), and a second
(asparaginase- glutaminase) present in the cytosol (type
I L-asparaginase) that hydrolyzes both asparagine and
glutamine with similar specificities and has a lower
affinity for its substrate. Bacterial L-asparaginases
(type II) are potent antileukemic agents and have been
used in the treatment of acute lymphoblastic leukemia
(ALL). A conserved threonine residue is thought to
supply the nucleophile hydroxy-group that attacks the
amide bond. Many bacterial L-asparaginases have both
L-asparagine and L-glutamine hydrolysis activities, to a
different degree, and some of them are annotated as
asparaginase/glutaminase. This wider family also
includes a subunit of an archaeal Glu-tRNA
amidotransferase.
Length = 320
Score = 46.7 bits (111), Expect = 1e-05
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRG-TTSNIYETGKSLTDVGV 61
G++L G+G+ P D+ +L SA++RGV +V SQ G N + GV
Sbjct: 238 GIVLAGTGNGSVPY---DVFPVLSSASKRGVAVVRSSQVIYGGVDLNAEKV---DLKAGV 291
Query: 62 ITGYDMTPESALTKLSYVLSKS 83
I D+ PE A L + L+ +
Sbjct: 292 IPAGDLNPEKARVLLMWALTHT 313
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 40.3 bits (95), Expect = 4e-05
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 242 DQRSALHIACCEGHTDIVKYLLLNGASVHE 271
D R+ LH+A G+ ++VK LL GA ++
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 40.3 bits (95), Expect = 4e-05
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 394 DQRSALHIACCEGHTDIVKYLLLNGASVHE 423
D R+ LH+A G+ ++VK LL GA ++
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 37.6 bits (88), Expect = 3e-04
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 242 DQRSALHIACCEGHTDIVKYLLLNGASVH 270
D + LH+A G+ ++VK LL +GA ++
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADIN 29
Score = 37.6 bits (88), Expect = 3e-04
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 394 DQRSALHIACCEGHTDIVKYLLLNGASVH 422
D + LH+A G+ ++VK LL +GA ++
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADIN 29
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 38.4 bits (90), Expect = 3e-04
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 243 QRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLT 281
R+ALH A G ++VKYLL G ++ D T L
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALH 39
Score = 36.4 bits (85), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 395 QRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
R+ALH A G ++VKYLL G ++ D
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDE 32
Score = 36.1 bits (84), Expect = 0.002
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLL 263
G D++ D D +ALHIA G+ +++K LL
Sbjct: 24 GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 36.1 bits (84), Expect = 0.002
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLL 415
G D++ D D +ALHIA G+ +++K LL
Sbjct: 24 GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 41.5 bits (98), Expect = 7e-04
Identities = 43/200 (21%), Positives = 73/200 (36%), Gaps = 34/200 (17%)
Query: 233 GADLSIKDADQRSALHIACCEG---HTDIVKYLLLNGASVHEKD---RVQLTVLTNIRGE 286
GAD++ KD R+ LH+ G + +++ LL GA V+ D L VL
Sbjct: 107 GADVNAKDKVGRTPLHV-YLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLL----- 160
Query: 287 LTSEKSTEGGYDLVGAVVRLLNLTTEK-----DKDDLRSVLFPAMLQSAVMTGDLKRMEE 341
KS A V LL L + DD L LQS R
Sbjct: 161 ----KSR-------NANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSF-----KPRARI 204
Query: 342 IKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHI 401
++ + + + T + ++ + K +P L G ++ ++ ++ LH
Sbjct: 205 VRELIRAGCDPAATDMLGNTPLHSMATGSSCK-RSLVLPLLIAGISINARNRYGQTPLHY 263
Query: 402 ACCEGHTDIVKYLLLNGASV 421
A + + L+ GA +
Sbjct: 264 AAVFNNPRACRRLIALGADI 283
Score = 34.2 bits (79), Expect = 0.11
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 385 GADLSIKDADQRSALHIACCEG---HTDIVKYLLLNGASVHEKD 425
GAD++ KD R+ LH+ G + +++ LL GA V+ D
Sbjct: 107 GADVNAKDKVGRTPLHV-YLSGFNINPKVIRLLLRKGADVNALD 149
Score = 28.5 bits (64), Expect = 7.2
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 385 GADLSIKDADQRSALHI-----ACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ D + L + ++++ L+ GA V+ D
Sbjct: 142 GADVNALDLYGMTPLAVLLKSRNAN---VELLRLLIDAGADVYAVD 184
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 36.9 bits (86), Expect = 7e-04
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 234 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
DL+ D + + LH+A G ++V++LL G ++ +D LT L
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53
Score = 36.6 bits (85), Expect = 0.001
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 386 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
DL+ D + + LH+A G ++V++LL G ++ +D
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDS 47
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 40.7 bits (95), Expect = 0.002
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
GAD + +D D R+ LHIAC GH +V+ LL GA D+
Sbjct: 105 GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146
Score = 40.7 bits (95), Expect = 0.002
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD + +D D R+ LHIAC GH +V+ LL GA D+
Sbjct: 105 GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 40.0 bits (93), Expect = 0.002
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 327 LQSAVMTGDLKRMEEI---KGYVSNIVYEFSMNP-HLTTLISNLPQEITQKLDIDGVPSL 382
L AV GD+K +EE+ + ++ Y+ M P HL T++ L +I + L +
Sbjct: 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL--DIMKLL-------I 122
Query: 383 FQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+GAD I + D+ S LH+A G ++ L+ + A + +D
Sbjct: 123 ARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIED 165
Score = 29.6 bits (66), Expect = 3.9
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 180 LQSAVMTGDLKRMEEI------KGYVKRPQGALPFALNSSLPQEITQKLDIDGVPSLFQG 233
L AV GD+K +EE+ V G P L + I +KLDI + + +G
Sbjct: 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLAT-----ILKKLDIMKL-LIARG 125
Query: 234 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
AD I + D+ S LH+A G ++ L+ + A + +D
Sbjct: 126 ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIED 165
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 37.3 bits (87), Expect = 0.012
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 233 GADLSIKDADQRSALHIA--CCEGHTDIVKYLLLNGASVHEKDRVQL 277
GA+++IK++D + LH+ + I+K L+ G ++ K+RV
Sbjct: 131 GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNY 177
Score = 35.0 bits (81), Expect = 0.069
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 385 GADLSIKDADQRSALHIA--CCEGHTDIVKYLLLNGASVHEKDR 426
GA+++IK++D + LH+ + I+K L+ G ++ K+R
Sbjct: 131 GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR 174
Score = 33.5 bits (77), Expect = 0.21
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 44/223 (19%)
Query: 224 IDGVPSLF-QGADLSIKDADQRSALHIACCEGHT-----DIVKYLLLNGASVHEKDRVQL 277
ID V L GAD++ + + LH + +IVK LL GA+V+ D +
Sbjct: 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGI 107
Query: 278 TVLTNIRGELTSEKSTEGGYDLV------GAVVR--------LLNLTTEKDKDDLRSVLF 323
T L S+KS Y +V GA V LL+L E +K DL+ +
Sbjct: 108 TPLLY----AISKKSNS--YSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKL 161
Query: 324 PAMLQSAVMTGDLKRMEEIK-----GYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDG 378
++ V D+ + G NI + P L + N E + L
Sbjct: 162 --LIDKGV---DINAKNRVNYLLSYGVPINIKDVYGFTP-LHYAVYNNNPEFVKYL---- 211
Query: 379 VPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASV 421
L GA+ ++ + + LHIA + +I K LL NG S+
Sbjct: 212 ---LDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI 251
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 36.7 bits (84), Expect = 0.012
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 17/147 (11%)
Query: 139 ELTSEKSTEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTG------DLKRM 192
+ + + ++ L L D + L+ A++ LK +
Sbjct: 2 KPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLI 61
Query: 193 EEIKGYVKRPQGALPFALNSSLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIAC- 251
+ + G LP +S + KL + GAD++ KDAD + LH+A
Sbjct: 62 VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLA------SGADVNAKDADGDTPLHLAAL 115
Query: 252 ----CEGHTDIVKYLLLNGASVHEKDR 274
EG+ ++ K LL GA + +
Sbjct: 116 NGNPPEGNIEVAKLLLEAGADLDVNNL 142
Score = 36.0 bits (82), Expect = 0.026
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 200 KRPQGALPFALNSSLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIV 259
K+ L AL + I + D D R LH A +G IV
Sbjct: 37 KKLNLYLELALLPAASLSELLLKLIVDRHLAAR-------DLDGRLPLHSAASKGDDKIV 89
Query: 260 KYLLLNGASVHEKDRVQLTVL 280
K LL +GA V+ KD T L
Sbjct: 90 KLLLASGADVNAKDADGDTPL 110
Score = 35.6 bits (81), Expect = 0.028
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 356 NPHLTTLISNLPQEIT---QKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVK 412
P ++ P E KL ++ +++D D + LH A G DIV+
Sbjct: 108 TPLHLAALNGNPPEGNIEVAKLLLEAGA---DLDVNNLRDEDGNTPLHWAALNGDADIVE 164
Query: 413 YLLLNGASVHEKDR 426
LL GA + ++
Sbjct: 165 LLLEAGADPNSRNS 178
Score = 35.2 bits (80), Expect = 0.037
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 205 ALPFALNSSLPQEIT---QKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKY 261
L A + P E KL ++ +++D D + LH A G DIV+
Sbjct: 109 PLHLAALNGNPPEGNIEVAKLLLEAGA---DLDVNNLRDEDGNTPLHWAALNGDADIVEL 165
Query: 262 LLLNGASVHEKDRVQLTVL 280
LL GA + ++ +T L
Sbjct: 166 LLEAGADPNSRNSYGVTAL 184
Score = 33.3 bits (75), Expect = 0.16
Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 10/146 (6%)
Query: 286 ELTSEKSTEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGY 345
+ + + ++ L L D + L+ A++ +
Sbjct: 2 KPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAAS-----LSEL 56
Query: 346 VSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIAC-- 403
+ ++ + + L ++ D L GAD++ KDAD + LH+A
Sbjct: 57 LLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN 116
Query: 404 ---CEGHTDIVKYLLLNGASVHEKDR 426
EG+ ++ K LL GA + +
Sbjct: 117 GNPPEGNIEVAKLLLEAGADLDVNNL 142
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 36.1 bits (83), Expect = 0.034
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 220 QKLDIDGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+K D++ + LF+ GAD++I+D + +HIA DI+K LL GA + KD
Sbjct: 133 KKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD 187
Score = 36.1 bits (83), Expect = 0.034
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 372 QKLDIDGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+K D++ + LF+ GAD++I+D + +HIA DI+K LL GA + KD
Sbjct: 133 KKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD 187
Score = 31.5 bits (71), Expect = 0.84
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 327 LQSAVMTGDLKRMEEIKGYVSNIVYEFSMNPH-LTTLISNLPQEITQKLDIDGVPS---- 381
L A+ +GD K +E + ++I + + PH L T I +I + L +GV +
Sbjct: 39 LIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILP 98
Query: 382 ------------LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L G D++IKDA+ ++ LH A +G + +K L GA V+ +D
Sbjct: 99 IPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED 154
Score = 29.9 bits (67), Expect = 2.5
Identities = 43/199 (21%), Positives = 81/199 (40%), Gaps = 33/199 (16%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKS 292
G D++IKDA+ ++ LH A +G + +K L GA V+ +D G +
Sbjct: 114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED---------DNGCYPIHIA 164
Query: 293 TEGG-YDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVY 351
+ +D++ ++ KD + + L +A GD ++ + + ++I+
Sbjct: 165 IKHNFFDIIKLLLEKGAYANVKDNN------GESPLHNAAEYGDYACIKLLIDHGNHIMN 218
Query: 352 EFS--MNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIAC---CEG 406
+ P +I N + L A ++ +D D + LH A C+
Sbjct: 219 KCKNGFTPLHNAIIHNR----------SAIELLINNASINDQDIDGSTPLHHAINPPCD- 267
Query: 407 HTDIVKYLLLNGASVHEKD 425
DI+ LL + A + KD
Sbjct: 268 -IDIIDILLYHKADISIKD 285
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 35.4 bits (81), Expect = 0.058
Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 35/206 (16%)
Query: 227 VPSLFQ-GADLSIKDADQRSALHIACCEGH-TDIVKYLLLNGASVHEKDRVQLTVLTNIR 284
VP L + GAD++ K+ + L++ G+ T+ ++ L++ GA V+ DR+ +T L
Sbjct: 290 VPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPL---- 345
Query: 285 GELTSEKSTEGGY-DLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRM-EEI 342
+ ST D+V ++ L +D D + + A+ + V+ L +I
Sbjct: 346 ----HQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI 401
Query: 343 KGYVSNI--VYEFSM---NPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRS 397
+ I F++ NP+++ K ID +GA+++ K+ D +
Sbjct: 402 EALSQKIGTALHFALCGTNPYMSV-----------KTLID------RGANVNSKNKDLST 444
Query: 398 ALHIACCEG-HTDIVKYLLLNGASVH 422
LH AC + D+++ LL NGA V+
Sbjct: 445 PLHYACKKNCKLDVIEMLLDNGADVN 470
Score = 33.9 bits (77), Expect = 0.18
Identities = 43/198 (21%), Positives = 86/198 (43%), Gaps = 24/198 (12%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTS 289
L GAD++ KD + +H A G+ +V LL GA V + + L L+ + + S
Sbjct: 165 LEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADV---NIIALDDLSVLECAVDS 221
Query: 290 EKSTEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNI 349
+ D + A++ + + D L+++ + S ++ + I +
Sbjct: 222 KN-----IDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTP 276
Query: 350 VYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGH-T 408
++ S P L+ L+ L L +GAD++ K+ + L++ G+ T
Sbjct: 277 LHHASQAPSLSRLVPKL---------------LERGADVNAKNIKGETPLYLMAKNGYDT 321
Query: 409 DIVKYLLLNGASVHEKDR 426
+ ++ L++ GA V+ DR
Sbjct: 322 ENIRTLIMLGADVNAADR 339
Score = 30.4 bits (68), Expect = 1.9
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 156 VVRLLNL---TTEKDKDDLRSVLFPAMLQSAVMTGDLKRM-EEIKGYVKRPQGALPFALN 211
V+ LL L +D D + + A+ + V+ L +I+ ++ AL FAL
Sbjct: 358 VITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALC 417
Query: 212 SSLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEG-HTDIVKYLLLNGASVH 270
+ P + L ID +GA+++ K+ D + LH AC + D+++ LL NGA V+
Sbjct: 418 GTNPYMSVKTL-ID------RGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVN 470
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 35.3 bits (81), Expect = 0.071
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 58/193 (30%)
Query: 256 TDIVKYLLLNGASVHEKDRVQLTVLTN--IRGELTS---EKSTEGGYDLVGAVVRLLNLT 310
DI+++L NG +V+ ++ +T L I G + + +K E G D+
Sbjct: 192 IDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM----------- 240
Query: 311 TEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYEFSMNPHLTTL-------- 362
D++ V S +MT Y+ NI ++NP +T +
Sbjct: 241 ------DMKCV----NGMSPIMT-----------YIINID---NINPEITNIYIESLDGN 276
Query: 363 -ISNLPQ------EITQKLDIDGVPSLFQ-GADLSIKDADQRSALH--IACCEGHTDIVK 412
+ N+P + + +DI V S Q G L KD+ R+ LH I TDI+K
Sbjct: 277 KVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIK 336
Query: 413 YLLLNGASVHEKD 425
L G ++E D
Sbjct: 337 LLHEYGNDLNEPD 349
Score = 33.3 bits (76), Expect = 0.30
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 217 EITQKLDIDGVPSLFQ-GADLSIKDADQRSALH--IACCEGHTDIVKYLLLNGASVHEKD 273
+ + +DI V S Q G L KD+ R+ LH I TDI+K L G ++E D
Sbjct: 290 TLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPD 349
Query: 274 RVQLTVL 280
+ TVL
Sbjct: 350 NIGNTVL 356
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 34.9 bits (80), Expect = 0.077
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 233 GADLSIKDADQ-RSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
GAD+++KD + +ALH A + + LL GA+V+ D+
Sbjct: 157 GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDK 199
Score = 34.9 bits (80), Expect = 0.077
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 385 GADLSIKDADQ-RSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD+++KD + +ALH A + + LL GA+V+ D+
Sbjct: 157 GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDK 199
Score = 30.2 bits (68), Expect = 2.1
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 348 NIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGH 407
N+ N L N Q +T+ L L GA+++I D S LH A +
Sbjct: 161 NMKDRHKGNTALHYATENKDQRLTELL-------LSYGANVNIPDKTNNSPLHHAVKHYN 213
Query: 408 TDIVKYLLLNGASVHEKD 425
IV LL NGAS +D
Sbjct: 214 KPIVHILLENGASTDARD 231
Score = 29.8 bits (67), Expect = 3.4
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GA+++I D S LH A + IV LL NGAS +D+ T L
Sbjct: 188 LSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPL 238
>gnl|CDD|119337 cd06569, GH20_Sm-chitobiase-like, The chitobiase of Serratia
marcescens is a beta-N-1,4-acetylhexosaminidase with a
glycosyl hydrolase family 20 (GH20) domain that
hydrolyzes the beta-1,4-glycosidic linkages in oligomers
derived from chitin. Chitin is degraded by a two step
process: i) a chitinase hydrolyzes the chitin to
oligosaccharides and disaccharides such as
di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase
then further degrades these oligomers into monomers. The
GH20 hexosaminidases are thought to act via a catalytic
mechanism in which the catalytic nucleophile is not
provided by solvent or the enzyme, but by the substrate
itself.
Length = 445
Score = 31.1 bits (71), Expect = 1.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 9 YGSGNFPSN-------RADLLELLKSANERGVIIV 36
GSG +N RAD +E+LK A R + ++
Sbjct: 80 LGSGPDTNNSGSGYYSRADYIEILKYAKARHIEVI 114
>gnl|CDD|233849 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase. This
enzyme, formally named (1->4)-alpha-D-glucan
1-alpha-D-glucosylmutase, is the TreY enzyme of the
TreYZ pathway of trehalose biosynthesis, an alternative
to the OtsAB pathway. Trehalose may be incorporated into
more complex compounds but is best known as compatible
solute. It is one of the most effective osmoprotectants,
and unlike the various betaines does not require
nitrogen for its synthesis [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 825
Score = 31.2 bits (71), Expect = 1.3
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 193 EEIKGYVKRPQGALPFALNSSLPQEITQKLDIDGVPSLFQGA---DLSIKDADQR 244
+ +V R + +P L +SL Q KL GVP ++QG DLS+ D D R
Sbjct: 627 LFLTDFVAREKKLIPAGLQNSLSQ-TLLKLTAPGVPDIYQGTEFWDLSLVDPDNR 680
>gnl|CDD|217160 pfam02638, DUF187, Uncharacterized BCR, COG1649.
Length = 394
Score = 30.7 bits (69), Expect = 1.4
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 25/111 (22%)
Query: 285 GELTSEKSTEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDL-------- 336
G T EK + GYD + ++ D+ R++ + L
Sbjct: 97 GLKTGEKGGDPGYDPLAFMI---------DEAHKRNLRVHPWFEFGFNAPALSDLVKAHP 147
Query: 337 -----KRMEEIKGYVSNIVYEFSMNP---HLTTLISNLPQEITQKLDIDGV 379
+ + +NP + I+ L ++ ++ D+DGV
Sbjct: 148 AWLTTQHRDWTITSEGGTGPRVWLNPGHPEVQDFITALVVDVVRRYDVDGV 198
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 30.4 bits (69), Expect = 2.0
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 245 SALHIACCEGHTD---IVKYLLLNGASVH 270
+ALH+A H IVK LL GASV
Sbjct: 130 TALHLA---AHRQNYEIVKLLLERGASVP 155
Score = 30.4 bits (69), Expect = 2.0
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 397 SALHIACCEGHTD---IVKYLLLNGASVH 422
+ALH+A H IVK LL GASV
Sbjct: 130 TALHLA---AHRQNYEIVKLLLERGASVP 155
>gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are
members of the classical SDR family, with a canonical
active site tetrad and a typical Gly-rich NAD-binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 249
Score = 29.6 bits (67), Expect = 2.7
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 285 GELTSEKSTEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKG 344
GE T+ + + G L+ R L ++ D+L + FP + + D+ E I+
Sbjct: 13 GEATARRFAKAGAKLILTGRRAERL--QELADELGA-KFPV--KVLPLQLDVSDRESIEA 67
Query: 345 YVSNIVYEFS 354
+ N+ EF
Sbjct: 68 ALENLPEEFR 77
>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase.
Length = 476
Score = 29.6 bits (66), Expect = 3.1
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 300 VGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYEFSMNPHL 359
+G+V LL + + K++ ++ A+ ++++ G R+ E +G V VY HL
Sbjct: 182 IGSVASLLAASGKPLKNEKVAIFSDALNHASIIDG--VRLAERQGNVEVFVYRHCDMYHL 239
Query: 360 TTLISN 365
+L+S+
Sbjct: 240 NSLLSS 245
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 29.6 bits (66), Expect = 3.7
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 235 DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVH 270
D++ DA R+ L+ A G+ D+V +LL NGA+V+
Sbjct: 213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN 248
Score = 29.6 bits (66), Expect = 3.7
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 387 DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVH 422
D++ DA R+ L+ A G+ D+V +LL NGA+V+
Sbjct: 213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN 248
>gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic
binding fold superfamily. Type 1 periplasmic binding
fold superfamily. This model and hierarchy represent the
ligand binding domains of the LacI family of
transcriptional regulators, periplasmic binding proteins
of the ABC-type transport systems, the family C
G-protein couples receptors (GPCRs), membrane bound
guanylyl cyclases including the family of natriuretic
peptide receptors (NPRs), and the N-terminal
leucine/isoleucine/valine- binding protein (LIVBP)-like
domains of the ionotropic glutamate receptors (iGluRs).
In LacI-like transcriptional regulator and the bacterial
periplasmic binding proteins the ligands are
monosaccharides including lactose, ribose, fructose,
xylose, arabinose, galactose/glucose, and other sugars,
with a few exceptions. Periplasmic sugar binding
proteins are one of the components of ABC transporters
and are involved in the active transport of
water-soluble ligands. The LacI family of proteins
consists of transcriptional regulators related to the
lac repressor. In this case, the sugar binding domain
binds a sugar which changes the DNA binding activity of
the repressor domain. The periplasmic binding proteins
are the primary receptors for chemotaxis and transport
of many sugar based solutes. The core structures of
periplasmic binding proteins are classified into two
types, and they differ in number and order of beta
strands: type 1 has six beta strands, while type 2 has
five beta strands per sub-domain. These two structural
folds are thought to be distantly related via a common
ancestor. Notably, while the N-terminal LIVBP-like
domain of iGluRs belongs to the type 1
periplasmic-binding fold protein superfamily, the
glutamate-binding domain of the iGluR is structurally
similar to the type 2 periplasmic-binding fold.
Length = 269
Score = 28.7 bits (64), Expect = 5.0
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 9 YGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYETGKSLTDVGVITGYDMT 68
YG + LL+LLK+A + I + + G E G + D+ +I G+D +
Sbjct: 161 YGDLDTEKGFQALLQLLKAAPKPDAIFACNDEMAAGALKAAREAGLTPGDISII-GFDGS 219
Query: 69 PESALTKLSY 78
P + L
Sbjct: 220 PAALLAAGEA 229
>gnl|CDD|193576 cd09887, NGN_Arch, Archaeal N-Utilization Substance G (NusG)
N-terminal (NGN) domain. The N-Utilization Substance G
(NusG) protein and its eukaryotic homolog, Spt5, are
involved in transcription elongation and termination.
Transcription in archaea has a eukaryotic-type
transcription apparatus, but contains bacterial-type
transcription factors. NusG is one of the few archaeal
transcription factors that has orthologs in both
bacteria and eukaryotes. Archaeal NusG is similar to
bacterial NusG, composed of an NGN domain and a Kyrpides
Ouzounis and Woese (KOW) repeat. The eukaryotic
ortholog, Spt5, is a large protein composed of an acidic
N-terminus, an NGN domain, and multiple KOW motifs at
its C-terminus. NusG was originally discovered as a
N-dependent antitermination enhancing activity in
Escherichia coli and has a variety of functions, such as
being involved in RNA polymerase elongation and
Rho-termination in bacteria. Archaeal NusG forms a
complex with DNA-directed RNA polymerase subunit E
(rpoE) that is similar to the Spt5-Spt4 complex in
eukaryotes.
Length = 82
Score = 26.7 bits (60), Expect = 6.2
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 15/44 (34%)
Query: 156 VVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYV 199
V LL + EK+ D+ S+L P EE+KGYV
Sbjct: 15 VADLLAMRAEKENLDVYSILVP---------------EELKGYV 43
Score = 26.7 bits (60), Expect = 6.2
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 15/44 (34%)
Query: 303 VVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYV 346
V LL + EK+ D+ S+L P EE+KGYV
Sbjct: 15 VADLLAMRAEKENLDVYSILVP---------------EELKGYV 43
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 28.2 bits (63), Expect = 6.6
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 351 YEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIAC--CEGHT 408
S H + N+ EI + L ID G+ ++ +D D ++ LH+
Sbjct: 86 NNLSALHHYLSFNKNVEPEILKIL-IDS------GSSITEEDEDGKNLLHMYMCNFNVRI 138
Query: 409 DIVKYLLLNGASVHEKDR 426
+++K L+ +G S KD
Sbjct: 139 NVIKLLIDSGVSFLNKDF 156
>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic
ion transport and metabolism].
Length = 293
Score = 28.5 bits (64), Expect = 7.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 15 PSNRADLLELLKSANERGVI 34
P NR +LLEL++ + + +I
Sbjct: 31 PKNREELLELIRDSEQNELI 50
>gnl|CDD|223891 COG0821, gcpE, 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate
synthase [Lipid metabolism].
Length = 361
Score = 28.3 bits (64), Expect = 7.6
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 23 ELLKSANER--GVIIVNCSQCSRGTTSNIYET 52
E+L+S R GV ++ C C R T ++ +T
Sbjct: 247 EILQSLGLRSRGVEVIACPTCGR-TEFDVIQT 277
>gnl|CDD|223216 COG0138, PurH, AICAR transformylase/IMP cyclohydrolase PurH (only
IMP cyclohydrolase domain in Aful) [Nucleotide
transport and metabolism].
Length = 515
Score = 28.4 bits (64), Expect = 8.7
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 16 SNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYETGKSLTDVGVITGYDMTPE 70
S++ ++E K+ E GV I++ + GT + E G +T+V ITG+ PE
Sbjct: 10 SDKTGIVEFAKALVELGVEILS----TGGTAKLLAEAGIPVTEVSDITGF---PE 57
>gnl|CDD|238709 cd01421, IMPCH, Inosine monophosphate cyclohydrolase domain. This
is the N-terminal domain in the purine biosynthesis
pathway protein ATIC (purH). The bifunctional ATIC
protein contains a C-terminal ATIC formylase domain
that formylates
5-aminoimidazole-4-carboxamide-ribonucleotide. The
IMPCH domain then converts the
formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to
inosine monophosphate. This is the final step in de
novo purine production.
Length = 187
Score = 27.6 bits (62), Expect = 9.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 16 SNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYETGKSLTDVGVITGYD 66
S++ L+E K E GV I+ + GT + E G +TDV ITG+
Sbjct: 8 SDKTGLVEFAKELVELGVEIL----STGGTAKFLKEAGIPVTDVSDITGFP 54
>gnl|CDD|224875 COG1964, COG1964, Predicted Fe-S oxidoreductases [General function
prediction only].
Length = 475
Score = 28.1 bits (63), Expect = 9.9
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 10 GSGNFPSNRADLLELLKSANERGV--IIVN 37
+G P+ R DL+E++K A E G + +N
Sbjct: 116 FTGGEPTLRDDLIEIIKIAREEGYDHVQLN 145
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.368
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,688,330
Number of extensions: 1966249
Number of successful extensions: 1458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1418
Number of HSP's successfully gapped: 117
Length of query: 426
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 326
Effective length of database: 6,502,202
Effective search space: 2119717852
Effective search space used: 2119717852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.7 bits)