RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15713
(426 letters)
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus
horikoshii} PDB: 1wnf_A
Length = 328
Score = 128 bits (323), Expect = 8e-34
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 41/142 (28%)
Query: 1 MNGVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRG-TTSNIYETGKSLTDV 59
G+IL+ YG G P DL E++ + + + +V +Q Y+ G+ +
Sbjct: 224 YKGIILEGYGVGGIPYRGTDLFEVVS-SISKRIPVVLTTQAIYDGVDLQRYKVGRIALEA 282
Query: 60 GVITGYDMTPESALTKLSYVLSKSDWTLEKKKTSLTDVGVITGYDMTPESALTKLSYVLS 119
GVI DMT E+ +TKL ++L +
Sbjct: 283 GVIPAGDMTKEATITKLMWILGHT------------------------------------ 306
Query: 120 KSDWTLEKKKTIMLTNIRGELT 141
+E+ K +M NI GELT
Sbjct: 307 ---KNIEEVKQLMGKNITGELT 325
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A
2p2n_A 3ntx_A* 2ocd_A
Length = 358
Score = 121 bits (306), Expect = 3e-31
Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 41/142 (28%)
Query: 1 MNGVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDV 59
+ +IL++YG GN P N+ L+ L+ A++RG+++VN +QC G + Y TG +L
Sbjct: 254 VKALILRSYGVGNAPQNK-AFLQELQEASDRGIVVVNLTQCMSGKVNMGGYATGNALAHA 312
Query: 60 GVITGYDMTPESALTKLSYVLSKSDWTLEKKKTSLTDVGVITGYDMTPESALTKLSYVLS 119
GVI G DMT E+ LTKL Y+LS+
Sbjct: 313 GVIGGADMTVEATLTKLHYLLSQE------------------------------------ 336
Query: 120 KSDWTLEKKKTIMLTNIRGELT 141
E + M N+RGELT
Sbjct: 337 ---LDTETIRKAMSQNLRGELT 355
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Length = 438
Score = 122 bits (309), Expect = 3e-31
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 43/148 (29%)
Query: 1 MNGVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDV 59
G++++ G G+ P+ D++ ++ A E GV + SQC G + N+Y TG+ L
Sbjct: 329 YKGIVIEGTGLGHTPN---DIIPSIERAVEEGVAVCMTSQCIYGRVNLNVYSTGRKLLKA 385
Query: 60 GVITGYDMTPESALTKLSYVLSKSDWTLEKKKTSLTDVGVITGYDMTPESALTKLSYVLS 119
GVI DM PE+A KL +VL +
Sbjct: 386 GVIPCEDMLPETAYVKLMWVLGHTQ----------------------------------- 410
Query: 120 KSDWTLEKKKTIMLTNIRGELTSEKSTE 147
LE+ + +MLTN GE+T +
Sbjct: 411 ----NLEEVRKMMLTNYAGEITPYTRFD 434
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: b.38.3.1 c.88.1.1
Length = 435
Score = 120 bits (303), Expect = 2e-30
Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 43/148 (29%)
Query: 1 MNGVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTS-NIYETGKSLTDV 59
G++++ G G+ P L+ ++ A++ GV + SQC G + N+Y TG+ L
Sbjct: 326 YRGIVIEGTGLGHCPD---TLIPVIGEAHDMGVPVAMTSQCLNGRVNMNVYSTGRRLLQA 382
Query: 60 GVITGYDMTPESALTKLSYVLSKSDWTLEKKKTSLTDVGVITGYDMTPESALTKLSYVLS 119
GVI DM PE A K+ +VL ++D
Sbjct: 383 GVIPCDDMLPEVAYVKMCWVLGQTD----------------------------------- 407
Query: 120 KSDWTLEKKKTIMLTNIRGELTSEKSTE 147
E + +M NI GE+ S
Sbjct: 408 ----DPEMAREMMRENIAGEINERTSIA 431
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 99.1 bits (248), Expect = 7e-23
Identities = 40/204 (19%), Positives = 70/204 (34%), Gaps = 36/204 (17%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTS 289
L + A + + + LH+A + DIVK LL G S H T L
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL--------H 217
Query: 290 EKSTEGGYDLVGAVVRLL-----NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEI-- 342
+ + + V R L + + + L A G + + +
Sbjct: 218 IAAKQNQVE----VARSLLQYGGSAN-AESVQGVTP------LHLAAQEGHAEMVALLLS 266
Query: 343 KGYVSNIVYEFSMNP-HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHI 401
K N+ + + P HL ++ + L + G + + LH+
Sbjct: 267 KQANGNLGNKSGLTPLHLVAQEGHV--PVADVL-------IKHGVMVDATTRMGYTPLHV 317
Query: 402 ACCEGHTDIVKYLLLNGASVHEKD 425
A G+ +VK+LL + A V+ K
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKT 341
Score = 99.1 bits (248), Expect = 7e-23
Identities = 40/202 (19%), Positives = 60/202 (29%), Gaps = 63/202 (31%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTS 289
L A ++ K D ++ LH A GHT++VK LL N A+ + T L
Sbjct: 67 LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH-------- 118
Query: 290 EKSTEGGYDLVGAVVRLL-----NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKG 344
+ G+ V L + K L A G
Sbjct: 119 -IAAREGHV---ETVLALLEKEASQA-CMTKKGFTP------LHVAAKYG---------- 157
Query: 345 YVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACC 404
+ + + L L + A + + + LH+A
Sbjct: 158 -------------KV---------RVAELL-------LERDAHPNAAGKNGLTPLHVAVH 188
Query: 405 EGHTDIVKYLLLNGASVHEKDR 426
+ DIVK LL G S H
Sbjct: 189 HNNLDIVKLLLPRGGSPHSPAW 210
Score = 98.7 bits (247), Expect = 8e-23
Identities = 46/204 (22%), Positives = 76/204 (37%), Gaps = 40/204 (19%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
+G + + LHIA + ++ + LL G S + + +T L
Sbjct: 201 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH---------L 251
Query: 292 STEGGYDLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEI-- 342
+ + G+ +V LL N +K L L G + + +
Sbjct: 252 AAQEGHA---EMVALLLSKQANGN---LGNKSGLTP------LHLVAQEGHVPVADVLIK 299
Query: 343 KGYVSNIVYEFSMNP-HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHI 401
G + + P H+ + N+ ++ + L L AD++ K S LH
Sbjct: 300 HGVMVDATTRMGYTPLHVASHYGNI--KLVKFL-------LQHQADVNAKTKLGYSPLHQ 350
Query: 402 ACCEGHTDIVKYLLLNGASVHEKD 425
A +GHTDIV LL NGAS +E
Sbjct: 351 AAQQGHTDIVTLLLKNGASPNEVS 374
Score = 96.4 bits (241), Expect = 5e-22
Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 40/205 (19%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
A+ ++ + LHIA EGH + V LL AS + T L
Sbjct: 102 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV--------- 152
Query: 292 STEGGYDLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEI-- 342
+ + G V LL N K+ L L AV +L ++ +
Sbjct: 153 AAKYGKV---RVAELLLERDAHPN---AAGKNGLTP------LHVAVHHNNLDIVKLLLP 200
Query: 343 KGYVSNIVYEFSMNP-HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHI 401
+G + P H+ + + E+ + L L G + + + LH+
Sbjct: 201 RGGSPHSPAWNGYTPLHIAAKQNQV--EVARSL-------LQYGGSANAESVQGVTPLHL 251
Query: 402 ACCEGHTDIVKYLLLNGASVHEKDR 426
A EGH ++V LL A+ + ++
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNK 276
Score = 64.4 bits (158), Expect = 2e-11
Identities = 22/49 (44%), Positives = 26/49 (53%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
AD++ K S LH A +GHTDIV LL NGAS +E T L
Sbjct: 333 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 381
Score = 64.1 bits (157), Expect = 2e-11
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+GA ++ + + LH+A GHT++ KYLL N A V+ K + T L
Sbjct: 36 RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL 84
Score = 63.3 bits (155), Expect = 5e-11
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
G + LH+A GH IVK LL GAS + + T L
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPL 51
Score = 62.5 bits (153), Expect = 8e-11
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+GA ++ + + LH+A GHT++ KYLL N A V+ K +
Sbjct: 36 RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK 78
Score = 61.7 bits (151), Expect = 2e-10
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
G + LH+A GH IVK LL GAS + +
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN 44
Score = 55.6 bits (135), Expect = 1e-08
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLL---NGASVHEKDRVQLTVL 280
GA + +D + L IA G+ + L + + V D+ +++
Sbjct: 366 NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 417
Score = 27.8 bits (63), Expect = 8.4
Identities = 5/42 (11%), Positives = 12/42 (28%), Gaps = 9/42 (21%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ + + + D + S V +L E+
Sbjct: 402 ETSFVLVSDKHRMSFPE---------TVDEILDVSEDEGEEL 434
Score = 27.8 bits (63), Expect = 8.4
Identities = 5/42 (11%), Positives = 12/42 (28%), Gaps = 9/42 (21%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ + + + D + S V +L E+
Sbjct: 402 ETSFVLVSDKHRMSFPE---------TVDEILDVSEDEGEEL 434
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 94.4 bits (236), Expect = 2e-22
Identities = 42/219 (19%), Positives = 71/219 (32%), Gaps = 73/219 (33%)
Query: 234 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK-S 292
+ ++ ++RS LH A GH DI L+ GA++ Q T L +E
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLM-----EAAENNH 56
Query: 293 TEGGYDLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGY 345
E V+ L + KD + + L A
Sbjct: 57 LE--------AVKYLIKAGALVD---PKDAEG-STCLHLA-------------------- 84
Query: 346 VSNIVYEFSMNPHLTT---LISNLPQEITQKLDIDGVPSLF----------------QGA 386
+ H L+SN ++ + D G + +G+
Sbjct: 85 --------AKKGHYEVVQYLLSNGQMDVNCQ-DDGGWTPMIWATEYKHVDLVKLLLSKGS 135
Query: 387 DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
D++I+D ++ LH A G DI + LL +H +
Sbjct: 136 DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN 174
Score = 63.6 bits (156), Expect = 8e-12
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GA++ DQR+ L A H + VKYL+ GA V KD T L
Sbjct: 33 AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL 81
Score = 62.4 bits (153), Expect = 2e-11
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
DL + S LHIA E D V L + V K++ T L
Sbjct: 166 AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
Score = 62.0 bits (152), Expect = 3e-11
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GA++ DQR+ L A H + VKYL+ GA V KD
Sbjct: 33 AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA 75
Score = 61.7 bits (151), Expect = 4e-11
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
DL + S LHIA E D V L + V K+
Sbjct: 166 AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207
Score = 61.3 bits (150), Expect = 5e-11
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+G+D++I+D ++ LH A G DI + LL +H +
Sbjct: 133 KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN 174
Score = 57.4 bits (140), Expect = 1e-09
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 232 QGA-DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
G D++ +D + + A H D+VK LL G+ ++ +D + L
Sbjct: 99 NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICL 148
Score = 56.7 bits (138), Expect = 2e-09
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS-VHEKDRVQLTVL 280
GA + KDA+ + LH+A +GH ++V+YLL NG V+ +D T +
Sbjct: 66 AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 48.6 bits (117), Expect = 9e-07
Identities = 4/36 (11%), Positives = 13/36 (36%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
+ +D+++K+ + + L A +
Sbjct: 199 RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 48.6 bits (117), Expect = 9e-07
Identities = 4/36 (11%), Positives = 13/36 (36%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 419
+ +D+++K+ + + L A +
Sbjct: 199 RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 91.3 bits (228), Expect = 2e-22
Identities = 32/194 (16%), Positives = 51/194 (26%), Gaps = 67/194 (34%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKS 292
+ + + L A G + V+ LL GA + +R + ++ S
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI-----QVMMMGS 56
Query: 293 TEGGYDLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGY 345
+ V LL N D L + A
Sbjct: 57 AQ--------VAELLLLHGAEPN---CADPATLTRPVHDA-------------------- 85
Query: 346 VSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCE 405
+ L + L GA L + DA R + +A +
Sbjct: 86 --------AREGFL---------DTLVVL-------HRAGARLDVCDAWGRLPVDLAEEQ 121
Query: 406 GHTDIVKYLLLNGA 419
GH DI +YL
Sbjct: 122 GHRDIARYLHAATG 135
Score = 61.7 bits (151), Expect = 6e-12
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ + + L A G + V+ LL GA + +R
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR 43
Score = 59.4 bits (145), Expect = 5e-11
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 232 QGADLSIKDADQR-SALHIACCEGHTDIVKYLLLNGASVHEKDR 274
GA+ + D +H A EG D + L GA + D
Sbjct: 66 HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109
Score = 59.4 bits (145), Expect = 5e-11
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 384 QGADLSIKDADQR-SALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GA+ + D +H A EG D + L GA + D
Sbjct: 66 HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109
Score = 57.5 bits (140), Expect = 2e-10
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLT 278
GAD + + R + + G + + LLL+GA + D LT
Sbjct: 34 AGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLT 79
Score = 57.1 bits (139), Expect = 3e-10
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD + + R + + G + + LLL+GA + D
Sbjct: 34 AGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADP 75
Score = 55.9 bits (136), Expect = 7e-10
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
GA L + DA R + +A +GH DI +YL
Sbjct: 100 AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 94.5 bits (236), Expect = 4e-22
Identities = 28/200 (14%), Positives = 55/200 (27%), Gaps = 48/200 (24%)
Query: 232 QGADLS---IKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELT 288
A +++ ++ALH+A G V+ L GA V +R T L
Sbjct: 31 FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL-------- 82
Query: 289 SEKSTEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSN 348
+ +L + + Y++
Sbjct: 83 HLACRVRAHT----CACVL-----------------------LQPRPSHPRDASDTYLTQ 115
Query: 349 IVYEFSMNPHLTTLI---SNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCE 405
H + N E + L ++ D + LH+A
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRD-------EDWRLQLEAENYDGHTPLHVAVIH 168
Query: 406 GHTDIVKYLLLNGASVHEKD 425
++V+ L GA +++ +
Sbjct: 169 KDAEMVRLLRDAGADLNKPE 188
Score = 93.4 bits (233), Expect = 1e-21
Identities = 33/204 (16%), Positives = 53/204 (25%), Gaps = 56/204 (27%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
GA + + + +ALH+AC LL S + TS
Sbjct: 67 AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126
Query: 292 -----STEGGYDLVGAVVRLLNL---TTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIK 343
S + R + ++ D L AV+ D
Sbjct: 127 PAAVDSQPNPENEE--EPRDEDWRLQLEAENYDGHTP------LHVAVIHKDA------- 171
Query: 344 GYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQ-RSALHIA 402
+V L GADL+ + R+ LH+A
Sbjct: 172 ----EMV-RL--------LRDA-------------------GADLNKPEPTCGRTPLHLA 199
Query: 403 CCEGHTDIVKYLLLNGASVHEKDR 426
+++ LL GA +
Sbjct: 200 VEAQAASVLELLLKAGADPTARMY 223
Score = 70.3 bits (173), Expect = 1e-13
Identities = 26/216 (12%), Positives = 47/216 (21%), Gaps = 78/216 (36%)
Query: 230 LFQGADLSIKDADQRS--------------ALHIACCEGHTDIVKYLLLNGASVHEKDRV 275
L +D A + + + ++
Sbjct: 98 LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157
Query: 276 QLTVLTNIRGELTSEK-STEGGYDLVGAVVRLL-----NLTTEKDKDDLRSVLFPAMLQS 329
T L + E +VRLL +L + + R+ L A
Sbjct: 158 GHTPLH-----VAVIHKDAE--------MVRLLRDAGADLN-KPEPTCGRTPLHLA---- 199
Query: 330 AVMTGDLKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLS 389
+ + L L GAD +
Sbjct: 200 ------------------------VEAQAA---------SVLELL-------LKAGADPT 219
Query: 390 IKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ R+ L A + + + L +GA E
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDG 255
Score = 62.9 bits (154), Expect = 3e-11
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L GAD + + R+ L A + + + L +GA E +L+
Sbjct: 212 LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC 262
Score = 57.9 bits (141), Expect = 1e-09
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 384 QGADLS---IKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
A +++ ++ALH+A G V+ L GA V +R
Sbjct: 31 FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER 76
Score = 49.1 bits (118), Expect = 1e-06
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 388 LSIKDADQRSALHIACCEGHTDIVKYLLLNGA---SVHEKD 425
D +ALH+A H + +LL A + ++
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQN 42
Score = 41.4 bits (98), Expect = 3e-04
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLL 263
GA D+ S + + +D
Sbjct: 247 HGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGD 278
Score = 41.4 bits (98), Expect = 3e-04
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLL 415
GA D+ S + + +D
Sbjct: 247 HGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGD 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 94.5 bits (236), Expect = 4e-22
Identities = 35/210 (16%), Positives = 70/210 (33%), Gaps = 67/210 (31%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELT--- 288
+GAD++ D +A A G +K+L GA+V+ + + + +G T
Sbjct: 94 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153
Query: 289 ---SEKSTEGGYDLVGAVVRLL--------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLK 337
+ E V+++L N D + L A+++ D
Sbjct: 154 DAAEKGHVE--------VLKILLDEMGADVN---ACDNMGRNA------LIHALLSSDDS 196
Query: 338 RMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRS 397
+E I L+ GAD++++ ++
Sbjct: 197 DVEAITHL----------------LLD-------------------HGADVNVRGERGKT 221
Query: 398 ALHIACCEGHTDIVKYLLLN-GASVHEKDR 426
L +A + H +V+ LL +++ D
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIEINDTDS 251
Score = 87.9 bits (219), Expect = 9e-20
Identities = 36/209 (17%), Positives = 59/209 (28%), Gaps = 68/209 (32%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
GAD ++ + + +A G ++K L GA V+E D T E
Sbjct: 61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF--------MEA 112
Query: 292 STEGGYDLVGAVVRLL-------NLTTEKDKDDLRSVLFPAM----LQSAVMTGDLKRME 340
+ G ++ L N + K L A G ++ ++
Sbjct: 113 AVYGKVK----ALKFLYKRGANVN---LRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165
Query: 341 EIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALH 400
L+ GAD++ D R+AL
Sbjct: 166 --------------------ILLDE------------------MGADVNACDNMGRNALI 187
Query: 401 IACCEGHTD----IVKYLLLNGASVHEKD 425
A I LL +GA V+ +
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRG 216
Score = 87.1 bits (217), Expect = 2e-19
Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 79/215 (36%)
Query: 232 QGADLSIKDADQ----------RSALHIACCEGHTDIVKYLLLN-GASVHEKDRVQLTVL 280
+GA+++++ + +AL A +GH +++K LL GA V+ D + L
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Query: 281 TNIRGELTSEKSTEGGYDLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMT 333
+ V A+ LL N + + ++ L A
Sbjct: 187 IHA--------LLSSDDSDVEAITHLLLDHGADVN---VRGERG-KTPLILA-------- 226
Query: 334 GDLKRMEEIKGYVSNIVYEFSMNPHLTT---LISNLPQEITQKLDIDGVPSLFQGADLSI 390
HL L+ + +++
Sbjct: 227 --------------------VEKKHLGLVQRLLEQ------------------EHIEIND 248
Query: 391 KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
D+D ++AL +A I + L GAS D
Sbjct: 249 TDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 56.7 bits (138), Expect = 3e-09
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 232 QGADLSIKDADQR-SALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GA+++ ++ + + LH A DIV+ LL +GA + + T
Sbjct: 27 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Score = 55.9 bits (136), Expect = 6e-09
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 384 QGADLSIKDADQR-SALHIACCEGHTDIVKYLLLNGASVHEKD 425
GA+++ ++ + + LH A DIV+ LL +GA +
Sbjct: 27 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK 69
Score = 50.2 bits (121), Expect = 5e-07
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 240 DADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
+ L A D+V+ LL GA+V+ ++
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE 36
Score = 50.2 bits (121), Expect = 5e-07
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 392 DADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ L A D+V+ LL GA+V+ ++
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE 36
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 94.9 bits (237), Expect = 1e-21
Identities = 22/196 (11%), Positives = 41/196 (20%), Gaps = 42/196 (21%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
L + S LH A D+ + G V+ +D L
Sbjct: 200 SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLY---------L 250
Query: 292 STEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVY 351
S + + L L ++ G
Sbjct: 251 SVRAAM---VLLTKEL-L-------------------QKTDVFLIQACPYHNGTTVLPDR 287
Query: 352 EFSMNP-HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDI 410
++ S E+ Q L + ++ + +
Sbjct: 288 VVWLDFVPAAADPSKQ--EVLQLL-------QEKLDEVVRSLNTGAGGAVKRKKKAAPAV 338
Query: 411 VKYLLLNGASVHEKDR 426
+ L A V + R
Sbjct: 339 KRMKLAPSAPVRTRSR 354
Score = 89.5 bits (223), Expect = 7e-20
Identities = 28/201 (13%), Positives = 57/201 (28%), Gaps = 39/201 (19%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
G +I++ +ALH+AC G D KYL G +
Sbjct: 42 TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHG--QKPI---------HL 90
Query: 292 STEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVY 351
+ +V L E K+ + E+ S++ +
Sbjct: 91 AVMANKT---DLVVAL---VEGAKERGQMPESLLN---------ECDEREVNEIGSHVKH 135
Query: 352 EFSMNP-HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDI 410
H + E+ + L + GA + KD + L A + +
Sbjct: 136 CKGQTALHWCVGLGPEYLEMIKIL-------VQLGASPTAKDKADETPLMRAMEFRNREA 188
Query: 411 VKYLL-----LNGASVHEKDR 426
+ ++ + + ++
Sbjct: 189 LDLMMDTVPSKSSLRLDYANK 209
Score = 81.8 bits (203), Expect = 3e-17
Identities = 33/200 (16%), Positives = 57/200 (28%), Gaps = 39/200 (19%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
G + +H+A TD+V L+ E+ ++ ++L
Sbjct: 75 VGEV--HSLWHGQKPIHLAVMANKTDLVVALVEGAK---ERGQMPESLL----------- 118
Query: 292 STEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVS---- 347
+ ++ K + L V G + +E IK V
Sbjct: 119 NECDEREVNEIGS------HVKHCKGQTA------LHWCVGLGP-EYLEMIKILVQLGAS 165
Query: 348 -NIVYEFSMNP-HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCE 405
+ P N E + +D VPS L + S LH A
Sbjct: 166 PTAKDKADETPLMRAMEFRNR--EALDLM-MDTVPSK-SSLRLDYANKQGNSHLHWAILI 221
Query: 406 GHTDIVKYLLLNGASVHEKD 425
D+ + G V+ +D
Sbjct: 222 NWEDVAMRFVEMGIDVNMED 241
Score = 60.7 bits (148), Expect = 2e-10
Identities = 24/203 (11%), Positives = 57/203 (28%), Gaps = 45/203 (22%)
Query: 236 LSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKSTEG 295
+ + + ++ + H K T L G
Sbjct: 104 VEGAKERGQMPESLLNECDEREVNE------IGSHVKHCKGQTAL--------HWCVGLG 149
Query: 296 GYDLVGAVVRLL-----NLTTEKDKDDLRSVLFPAMLQSAVMTGD-------LKRMEEIK 343
L ++++L + T KDK D L A+ + + +
Sbjct: 150 PEYL--EMIKILVQLGASPT-AKDKADETP------LMRAMEFRNREALDLMMDTVPSKS 200
Query: 344 GYVSNIVYEFSMNP-HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIA 402
+ + + H LI+ ++ + + G D++++D + L+++
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWE--DVAMRF-------VEMGIDVNMEDNEHTVPLYLS 251
Query: 403 CCEGHTDIVKYLLLNGASVHEKD 425
+ K LL +
Sbjct: 252 VRAAMVLLTKELLQKTDVFLIQA 274
Score = 58.0 bits (141), Expect = 2e-09
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 231 FQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
F + D + +H+A +G TD V+ L+ G S ++R T L
Sbjct: 8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL 57
Score = 56.8 bits (138), Expect = 4e-09
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 383 FQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
F + D + +H+A +G TD V+ L+ G S ++
Sbjct: 8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQN 50
Score = 56.4 bits (137), Expect = 6e-09
Identities = 16/185 (8%), Positives = 40/185 (21%), Gaps = 64/185 (34%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQ---LTVLTNIRGE 286
+ G D++++D + L+++ + K LL + TVL +
Sbjct: 231 VEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290
Query: 287 LTSEK--STEGGYDLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLK 337
L + + V++LL
Sbjct: 291 LDFVPAAADPSKQE----VLQLLQEKLDEVV---RSLNTG-AGGAVKR------------ 330
Query: 338 RMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRS 397
+ + L A + + +
Sbjct: 331 ----------------KKKAAP---------AVKRMK-------LAPSAPVRTRSRSRAR 358
Query: 398 ALHIA 402
+ ++
Sbjct: 359 SSAVS 363
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 92.1 bits (230), Expect = 1e-21
Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 61/199 (30%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
GAD S+ D + S +H+A GHT IV YL+ G V D+ +T L + +
Sbjct: 98 YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLM-----WAAYR 152
Query: 292 STEGGYDLVGAVVRLL-----NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYV 346
+ + RLL ++ DK + L A
Sbjct: 153 ----THSV--DPTRLLLTFNVSV-NLGDKYHKNTALHWA--------------------- 184
Query: 347 SNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEG 406
+ + + L L GA++ ++ SAL +A
Sbjct: 185 -------VLAGNT---------TVISLL-------LEAGANVDAQNIKGESALDLAKQRK 221
Query: 407 HTDIVKYLLLNGASVHEKD 425
+ ++ +L + +
Sbjct: 222 NVWMINHLQEARQAKGYDN 240
Score = 87.5 bits (218), Expect = 6e-20
Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 68/195 (34%)
Query: 239 KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK-STEGGY 297
D + A G + + L+ G V + D+ +T+L + +
Sbjct: 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLH-----WAAINNRID--- 56
Query: 298 DLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIV 350
+V+ + + D + L A
Sbjct: 57 -----LVKYYISKGAIVD---QLGGDLNSTPLHWA------------------------- 83
Query: 351 YEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDI 410
+ HL + +L + GAD S+ D + S +H+A GHT I
Sbjct: 84 ---TRQGHL---------SMVVQL-------MKYGADPSLIDGEGCSCIHLAAQFGHTSI 124
Query: 411 VKYLLLNGASVHEKD 425
V YL+ G V D
Sbjct: 125 VAYLIAKGQDVDMMD 139
Score = 61.7 bits (151), Expect = 4e-11
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
G D+ D + + LH A D+VKY + GA V +
Sbjct: 31 AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72
Score = 60.1 bits (147), Expect = 1e-10
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 384 QGADLSIKD-ADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+++ D + +ALH A G+T ++ LL GA+V ++
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208
Score = 56.3 bits (137), Expect = 2e-09
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 232 QGADLSIKDADQ-RSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+GA + D + LH A +GH +V L+ GA D
Sbjct: 64 KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLID 106
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 94.1 bits (235), Expect = 2e-21
Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 61/210 (29%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL----------- 280
GA ++ D Q + LH A + ++ LL +GA + + +
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172
Query: 281 --TNIRGELTSEKSTEGGYDLVGAVVRLLNL---TTEKDKDDLRSVLFPAMLQSAVMTGD 335
+G + + E V + L L ++ + + L AV +
Sbjct: 173 LTYEFKGHSLLQAAREADLA---KVKKTLALEIINFKQPQSHETA------LHCAVASLH 223
Query: 336 LKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQ 395
KR + + L+ GA+++ K+ D
Sbjct: 224 PKRKQVAE-----------------LLLRK-------------------GANVNEKNKDF 247
Query: 396 RSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ LH+A H D+++ L +GA ++ D
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKHGAKMNALD 277
Score = 90.6 bits (226), Expect = 2e-20
Identities = 46/206 (22%), Positives = 71/206 (34%), Gaps = 47/206 (22%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTS 289
L GAD+ KD LH AC GH ++ + LL +GA V+ D Q T L
Sbjct: 78 LQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE------- 130
Query: 290 EKSTEGGYDLVGAVVRLL-----NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRME-EIK 343
+ V LL + T + +S + A +R+ E K
Sbjct: 131 --AASKNRV---EVCSLLLSHGADP-TLVNCHG-KSAVD-----MAPTPELRERLTYEFK 178
Query: 344 GYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIAC 403
G + ++L +K L + +ALH A
Sbjct: 179 G----------HSLLQAAREADL--AKVKKT-------LALEIINFKQPQSHETALHCAV 219
Query: 404 CEGH---TDIVKYLLLNGASVHEKDR 426
H + + LL GA+V+EK++
Sbjct: 220 ASLHPKRKQVAELLLRKGANVNEKNK 245
Score = 64.1 bits (157), Expect = 2e-11
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ D + + LH+A IV+ LL +GA VH KD+ L L
Sbjct: 47 LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPL 95
Score = 62.9 bits (154), Expect = 4e-11
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+GA+++ K+ D + LH+A H D+++ L +GA ++ D + T L
Sbjct: 236 KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
Score = 62.5 bits (153), Expect = 6e-11
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ D + + LH+A IV+ LL +GA VH KD+
Sbjct: 47 LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK 89
Score = 62.1 bits (152), Expect = 9e-11
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GA ++ D+ ++ALH A GH + LL G+ T
Sbjct: 269 HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAA 317
Score = 52.5 bits (127), Expect = 9e-08
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGH---TDIVKYLLLNGASVHEKDRVQLTVL 280
L + +ALH A H + + LL GA+V+EK++ +T L
Sbjct: 198 LALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251
Score = 50.6 bits (122), Expect = 4e-07
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTD-IVKYLLLNGASVHEKDRVQLTVL 280
A + ++ L A G+ + ++ L + H D + T L
Sbjct: 13 PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62
Score = 48.3 bits (116), Expect = 2e-06
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTD-IVKYLLLNGASVHEKDR 426
A + ++ L A G+ + ++ L + H D
Sbjct: 13 PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDG 56
Score = 48.3 bits (116), Expect = 3e-06
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
G+D SI +A + + V+ +L + D
Sbjct: 302 YGSDPSIISLQGFTAAQMG-----NEAVQQILSESTPMRTSD 338
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 93.6 bits (232), Expect = 2e-21
Identities = 35/211 (16%), Positives = 73/211 (34%), Gaps = 31/211 (14%)
Query: 232 QGADLSIK-DADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL------TNIR 284
+L+I D + LH + ++VK+L+ +G++ D + + L N
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178
Query: 285 GELTSEKSTEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKG 344
T E + Y + +D + R++L + +G K
Sbjct: 179 DSGTFEALLDYLYPCL----------ILEDSMN-RTILHHI----IITSGMTGCSAAAKY 223
Query: 345 YVSNIV---------YEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQ 395
Y+ ++ S + ++ E + + L+ +D++
Sbjct: 224 YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG 283
Query: 396 RSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ L+IA G+ IV LL GA ++
Sbjct: 284 DTCLNIAARLGNISIVDALLDYGADPFIANK 314
Score = 56.2 bits (135), Expect = 6e-09
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L+ +D++ + L+IA G+ IV LL GA ++ L +
Sbjct: 270 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV 320
Score = 53.9 bits (129), Expect = 3e-08
Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 18/180 (10%)
Query: 232 QGADLSIKDADQRSALHIACCEGH---TDIVKYLL-LNGASVHEKDRVQLTVL---TNIR 284
G++ D S L A + + + LL + +D + T+L
Sbjct: 153 HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS 212
Query: 285 GELTSEKSTEGGYD-LVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIK 343
G + + D L+G +V+ N + ++ S + + ++ I
Sbjct: 213 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 272
Query: 344 GYVSNIVYEFSMNP-HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIA 402
+ N ++ + N+ I L L GAD I + +
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNI--SIVDAL-------LDYGADPFIANKSGLRPVDFG 323
Score = 28.8 bits (64), Expect = 3.0
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 230 LFQGADLSIKDADQRSALHIA 250
L GAD I + +
Sbjct: 303 LDYGADPFIANKSGLRPVDFG 323
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 90.7 bits (226), Expect = 3e-21
Identities = 39/203 (19%), Positives = 65/203 (32%), Gaps = 64/203 (31%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL--------TNI 283
A L+ ++ Q++ LH+A +I + LL G +D T L
Sbjct: 34 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS 93
Query: 284 RGELTSEKSTEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIK 343
G LT L ++ + + L A + G L +E
Sbjct: 94 VGVLTQS----------CTTPHLHSILKATNYNGHTC------LHLASIHGYLGIVE--- 134
Query: 344 GYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKD-ADQRSALHIA 402
L+S GAD++ ++ + R+ALH+A
Sbjct: 135 -----------------LLVSL-------------------GADVNAQEPCNGRTALHLA 158
Query: 403 CCEGHTDIVKYLLLNGASVHEKD 425
+ D+V LL GA V+
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVT 181
Score = 84.1 bits (209), Expect = 7e-19
Identities = 33/207 (15%), Positives = 55/207 (26%), Gaps = 70/207 (33%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGE----L 287
G D ++D + LH+AC +G V L + + H ++ TN G L
Sbjct: 67 AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK---ATNYNGHTCLHL 123
Query: 288 TSEK-STEGGYDLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRM 339
S +V LL N ++ + R+ L AV +
Sbjct: 124 ASIHGYLG--------IVELLVSLGADVN---AQEPCNGRTALH-----LAVDLQNPD-- 165
Query: 340 EEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSAL 399
+V L+ GAD++ S
Sbjct: 166 ---------LV-SL--------LLKC-------------------GADVNRVTYQGYSPY 188
Query: 400 HIACCEGHTDIVKYLLLNGASVHEKDR 426
+ T I + L +
Sbjct: 189 QLTWGRPSTRIQQQLGQLTLENLQMLP 215
Score = 59.1 bits (144), Expect = 3e-10
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
A L+ ++ Q++ LH+A +I + LL G +D
Sbjct: 34 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF 76
Score = 51.4 bits (124), Expect = 1e-07
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 217 EITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L + + L + + + LH+A G+ IV+ L+ GA V+ ++
Sbjct: 92 ASVGVL-TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP 148
Score = 46.4 bits (111), Expect = 6e-06
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 239 KDADQRSALHIACCEGHT----DIVKYLLLNGASVHEKDRVQLTVL 280
D S LH+A ++++ + + A ++ ++ +Q T L
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL 49
Score = 44.1 bits (105), Expect = 3e-05
Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 391 KDADQRSALHIACCEGHT----DIVKYLLLNGASVHEKDR 426
D S LH+A ++++ + + A ++ ++
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN 43
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 88.3 bits (220), Expect = 4e-21
Identities = 32/201 (15%), Positives = 53/201 (26%), Gaps = 69/201 (34%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
A S++ + L A G + V+ LL GA+ + + + ++
Sbjct: 3 PAAGSSMEPSA--DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-----QVMMMG 55
Query: 292 STEGGYDLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKG 344
S V LL N D L + A
Sbjct: 56 SAR--------VAELLLLHGAEPN---CADPATLTRPVHDA------------------- 85
Query: 345 YVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACC 404
+ L + L GA L ++DA R + +A
Sbjct: 86 ---------AREGFL---------DTLVVL-------HRAGARLDVRDAWGRLPVDLAEE 120
Query: 405 EGHTDIVKYLLLNGASVHEKD 425
GH D+ +YL +
Sbjct: 121 LGHRDVARYLRAAAGGTRGSN 141
Score = 62.1 bits (152), Expect = 7e-12
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GA L ++DA R + +A GH D+ +YL + ++
Sbjct: 100 AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAA 148
Score = 58.6 bits (143), Expect = 1e-10
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 384 QGADLSIKDADQR-SALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GA+ + D +H A EG D + L GA + +D
Sbjct: 66 HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA 109
Score = 57.9 bits (141), Expect = 3e-10
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLT 278
L GA+ + ++ R + + G + + LLL+GA + D LT
Sbjct: 32 LEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLT 79
Score = 57.1 bits (139), Expect = 4e-10
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L GA+ + ++ R + + G + + LLL+GA + D
Sbjct: 32 LEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP 75
Score = 54.4 bits (132), Expect = 3e-09
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
A S++ + L A G + V+ LL GA+ + +
Sbjct: 3 PAAGSSMEPSA--DWLATAAARGRVEEVRALLEAGANPNAPNS 43
Score = 30.1 bits (69), Expect = 0.70
Identities = 5/28 (17%), Positives = 7/28 (25%), Gaps = 5/28 (17%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIV 259
+ I EG +DI
Sbjct: 133 AAGGTRGSNH-----ARIDAAEGPSDIP 155
Score = 30.1 bits (69), Expect = 0.70
Identities = 5/28 (17%), Positives = 7/28 (25%), Gaps = 5/28 (17%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIV 411
+ I EG +DI
Sbjct: 133 AAGGTRGSNH-----ARIDAAEGPSDIP 155
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 88.7 bits (221), Expect = 5e-20
Identities = 34/199 (17%), Positives = 49/199 (24%), Gaps = 65/199 (32%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
GA + LH A T IVK LL +G + D T L
Sbjct: 53 AGAL--KNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL--------YYA 102
Query: 292 STEGGYDLVGAVVRLL-----NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYV 346
G V+L L K ++ + A
Sbjct: 103 VDSGNMQ----TVKLFVKKNWRLM-FYGKTGWKTSFYHA--------------------- 136
Query: 347 SNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEG 406
M + I L + + A S +HI G
Sbjct: 137 -------VMLNDV---------SIVSYF-------LSEIPS-TFDLAILLSCIHITIKNG 172
Query: 407 HTDIVKYLLLNGASVHEKD 425
H D++ LL S + +
Sbjct: 173 HVDMMILLLDYMTSTNTNN 191
Score = 63.7 bits (156), Expect = 1e-11
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 227 VPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ S D D SA + A + + +V LL GA + +
Sbjct: 15 LKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE 61
Score = 63.7 bits (156), Expect = 1e-11
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 379 VPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ S D D SA + A + + +V LL GA + +
Sbjct: 15 LKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE 61
Score = 61.8 bits (151), Expect = 7e-11
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
LF G D S D +AL+ A G+ VK + + +
Sbjct: 82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK 126
Score = 61.8 bits (151), Expect = 7e-11
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
LF G D S D +AL+ A G+ VK + + +
Sbjct: 82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK 126
Score = 56.4 bits (137), Expect = 4e-09
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GA + LH A T IVK LL +G + D
Sbjct: 53 AGAL--KNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDD 93
Score = 53.7 bits (130), Expect = 3e-08
Identities = 2/43 (4%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 232 QGADLSIKDADQRS-ALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ ++ + +A ++++ L +++ +
Sbjct: 183 YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN 225
Score = 49.1 bits (118), Expect = 9e-07
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 239 KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
D + SA +I K ++
Sbjct: 217 YDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDS 251
Score = 49.1 bits (118), Expect = 9e-07
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 391 KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
D + SA +I K ++
Sbjct: 217 YDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDS 251
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 86.5 bits (214), Expect = 1e-19
Identities = 43/198 (21%), Positives = 82/198 (41%), Gaps = 22/198 (11%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTS 289
L + + D D R+ALH AC GHT+IV++LL G V++KD + L
Sbjct: 27 LADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL--------H 78
Query: 290 EKSTEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNI 349
++ G ++V A++ +++ L A + + +N
Sbjct: 79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTP------LHYAASKNRHEIAVMLLEGGANP 132
Query: 350 -VYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHT 408
+ + + ++ L LF A +I+D + + LH+AC E
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHIL-------LFYKASTNIQDTEGNTPLHLACDEERV 185
Query: 409 DIVKYLLLNGASVHEKDR 426
+ K+L+ GAS++ +++
Sbjct: 186 EEAKFLVTQGASIYIENK 203
Score = 71.8 bits (176), Expect = 1e-14
Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 24/191 (12%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
G ++ KD S LHIA G +IVK LL+ GA V+ ++ T L
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPL--------HYA 113
Query: 292 STEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNI-V 350
+++ +++ ++ KD D + + A G+LK + + Y ++ +
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATA------MHRAAAKGNLKMVHILLFYKASTNI 167
Query: 351 YEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDI 410
+ N L E + L + QGA + I++ ++++ L +A +G +
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFL-------VTQGASIYIENKEEKTPLQVA--KGGLGL 218
Query: 411 VKYLLLNGASV 421
+ L G
Sbjct: 219 ILKRLAEGEEA 229
Score = 64.9 bits (158), Expect = 3e-12
Identities = 35/197 (17%), Positives = 62/197 (31%), Gaps = 38/197 (19%)
Query: 239 KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK-STEGGY 297
++A ++ + +L + + D+ T L TE
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-----WACSAGHTE--- 54
Query: 298 DLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNI- 349
+V L N +KD L A G + ++ + +++
Sbjct: 55 -----IVEFLLQLGVPVN---DKDDAGWSP------LHIAASAGXDEIVKALLVKGAHVN 100
Query: 350 VYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTD 409
+ L S EI L L GA+ KD +A+H A +G+
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVML-------LEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 410 IVKYLLLNGASVHEKDR 426
+V LL AS + +D
Sbjct: 154 MVHILLFYKASTNIQDT 170
Score = 46.0 bits (109), Expect = 6e-06
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGEL 287
LF A +I+D + + LH+AC E + K+L+ GAS++ +++ + T L +G L
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGL 216
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 88.9 bits (221), Expect = 1e-19
Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 68/209 (32%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLN---GASVHEKDRVQLTVLTNIRGELT 288
GAD +I + +RSALH A ++ Y+L + + E DR +T L +
Sbjct: 188 AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV----- 242
Query: 289 SEKSTEGGYDLVGAVVRLL------------NLTTEKDKDDLRSVLFPAMLQSAVMTGDL 336
+ G D V A +LL + + L A ++
Sbjct: 243 ---AHNEGRDQV-ASAKLLVEKGAKVDYDGAARKDSEKYKGRTA------LHYAAQVSNM 292
Query: 337 KRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQR 396
IV ++ L+ +G++ +D D +
Sbjct: 293 P-----------IV-KY--------LVGE------------------KGSNKDKQDEDGK 314
Query: 397 SALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ + +A EG ++V YL+ GASV D
Sbjct: 315 TPIMLAAQEGRIEVVMYLIQQGASVEAVD 343
Score = 83.1 bits (206), Expect = 1e-17
Identities = 33/218 (15%), Positives = 73/218 (33%), Gaps = 55/218 (25%)
Query: 217 EITQKLDIDGVPSLF-QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRV 275
E ++ L + GAD++ D D+ + L +A +V YL+ GA ++
Sbjct: 139 EKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS 198
Query: 276 QLTVLTNIRGELTSEKSTEGGYDLVGAVVRLL--NLTT-----EKDKDDLRSVLFPAMLQ 328
+ + L + + + ++ + + E D++ + + L
Sbjct: 199 ERSAL--------HQAAANRDFG----MMVYMLNSTKLKGDIEELDRNGMTA------LM 240
Query: 329 SAVMTGDLKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADL 388
++ K L+ +D + + +
Sbjct: 241 IVAHNEGRDQVASAK-----------------LLVEK-------GAKVDYDGAARKDS-- 274
Query: 389 SIKDADQRSALHIACCEGHTDIVKYLLL-NGASVHEKD 425
+ R+ALH A + IVKYL+ G++ ++D
Sbjct: 275 --EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD 310
Score = 81.5 bits (202), Expect = 4e-17
Identities = 25/194 (12%), Positives = 44/194 (22%), Gaps = 61/194 (31%)
Query: 239 KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKSTEGGYD 298
G+ + + N E + L G Y
Sbjct: 57 LQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKL---------HTEAAGSYA 107
Query: 299 LV------GAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYE 352
+ + D R+VL
Sbjct: 108 ITEPITRESVNI--------IDPRHNRTVLHWI--------------------------- 132
Query: 353 FSMNPHLTTLISNLPQEITQKLDIDGVPSLF-QGADLSIKDADQRSALHIACCEGHTDIV 411
+ N E ++ L + GAD++ D D+ + L +A +V
Sbjct: 133 -ASNSSA---------EKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182
Query: 412 KYLLLNGASVHEKD 425
YL+ GA +
Sbjct: 183 AYLMKAGADPTIYN 196
Score = 62.7 bits (153), Expect = 6e-11
Identities = 32/215 (14%), Positives = 56/215 (26%), Gaps = 80/215 (37%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLN--------GASVHEKDRVQLTVLTNI 283
+ ++ I R+ LH + + L+++ GA V+ D + T L
Sbjct: 115 ESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM-- 171
Query: 284 RGELTSEK-STEGGYDLVGAVVRLL-----NLTTEKDKDDLRSVLFPAMLQSAVMTGDLK 337
L +V L + T +K + RS L A
Sbjct: 172 ---LAVLARRRR--------LVAYLMKAGADPT-IYNKSE-RSALHQA------------ 206
Query: 338 RMEEIKGYVSNIVYEFSMNPHLTT---LISNLPQEITQKLDIDGVPSLFQGADLSIKDAD 394
+ N ++++ D+ D +
Sbjct: 207 ----------------AANRDFGMMVYMLNSTKL----------------KGDIEELDRN 234
Query: 395 QRSALHIACCEGHTD---IVKYLLLNGASVHEKDR 426
+AL I D K L+ GA V
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269
Score = 52.6 bits (127), Expect = 9e-08
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
QGA + DA +A +A H +IV
Sbjct: 335 QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370
Score = 51.1 bits (123), Expect = 3e-07
Identities = 4/42 (9%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ + + LH G I + + ++ +
Sbjct: 83 NLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNIIDPR 123
Score = 43.8 bits (104), Expect = 7e-05
Identities = 3/36 (8%), Positives = 7/36 (19%)
Query: 391 KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
G+ + + N E +
Sbjct: 57 LQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEP 92
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 82.9 bits (206), Expect = 1e-18
Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 66/194 (34%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS-VHEKDRVQLTVLTNIRGELTSE 290
+GAD++++++ S A +G T+I+ Y+L + +++ +R L +E
Sbjct: 61 RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALI-----PAAE 115
Query: 291 K-STEGGYDLVGAVVRLL--------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEE 341
K + V+LL + ++ + L A
Sbjct: 116 KGHID--------NVKLLLEDGREDID---FQNDFG-YTALIEA---------------- 147
Query: 342 IKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHI 401
+ + +I + L + GAD SIKD R+A+
Sbjct: 148 -------VGLREGNQLYQ---------DIVKLL-------MENGADQSIKDNSGRTAMDY 184
Query: 402 ACCEGHTDIVKYLL 415
A +G+T+I K L
Sbjct: 185 ANQKGYTEISKILA 198
Score = 77.9 bits (193), Expect = 5e-17
Identities = 31/209 (14%), Positives = 64/209 (30%), Gaps = 74/209 (35%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
+ D + + L+IA +I K L+ GA ++ ++ + +
Sbjct: 28 TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYL---------Y 78
Query: 292 STEGGYDLVGAVVRLL------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGY 345
+ G ++ + +L + ++ + L PA
Sbjct: 79 AGAQGRT---EILAYMLKHATPDL-NKHNRYG-GNALIPA-------------------- 113
Query: 346 VSNIVYEFSMNPHLTT---LISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIA 402
+ H+ L+ + ++I + + G +AL A
Sbjct: 114 --------AEKGHIDNVKLLLEDGREDIDFQ-NDFG-----------------YTALIEA 147
Query: 403 CC-----EGHTDIVKYLLLNGASVHEKDR 426
+ + DIVK L+ NGA KD
Sbjct: 148 VGLREGNQLYQDIVKLLMENGADQSIKDN 176
Score = 74.0 bits (183), Expect = 1e-15
Identities = 29/198 (14%), Positives = 48/198 (24%), Gaps = 69/198 (34%)
Query: 238 IKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKSTEGGY 297
+K + + L A + + L V E D T L +
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPL---------NIAVHNND 51
Query: 298 DLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIV 350
+ + L N ++ S A
Sbjct: 52 I---EIAKALIDRGADIN---LQNSIS-DSPYLYA------------------------- 79
Query: 351 YEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGA-DLSIKDADQRSALHIACCEGHTD 409
EI + L DL+ + +AL A +GH D
Sbjct: 80 ---GAQGRT---------EILAYM-------LKHATPDLNKHNRYGGNALIPAAEKGHID 120
Query: 410 IVKYLLLNG-ASVHEKDR 426
VK LL +G + ++
Sbjct: 121 NVKLLLEDGREDIDFQND 138
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 83.7 bits (207), Expect = 2e-18
Identities = 49/279 (17%), Positives = 78/279 (27%), Gaps = 68/279 (24%)
Query: 180 LQSAVMTGDLKRMEEIKGYVKRPQG---------------ALPFA-LNSSLPQEITQKLD 223
L S V G + + + Y++ L A LN
Sbjct: 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65
Query: 224 ID-----GVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLT 278
+ G P A + + SALHIA + VK L+ NGA VH + +
Sbjct: 66 LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125
Query: 279 VLTNIRGELTSEK-----STEGGYDLVGAVVRLL--------NLTTEKDKDDLRSVLFPA 325
E + +D VV L +L D +VL
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWD----VVTYLLENPHQPASL-EATDSLG-NTVLH-- 177
Query: 326 MLQSAVMTGDLKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQG 385
+ VM D N L + + ++ +L
Sbjct: 178 ---ALVMIADNSP----------------ENSALVIHMYDGLLQMGARL-------CPTV 211
Query: 386 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEK 424
I + + L +A EG +I +++L S
Sbjct: 212 QLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250
Score = 59.8 bits (145), Expect = 2e-10
Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 16/116 (13%)
Query: 327 LQSAVMTGDLKRMEEIKGYVSNIVYEFSMNPHL------TTLI------SNLPQEITQKL 374
L S V G + + + Y+ + + + T L+ + L
Sbjct: 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65
Query: 375 ----DIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
G P A + + SALHIA + VK L+ NGA VH +
Sbjct: 66 LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Score = 54.0 bits (130), Expect = 2e-08
Identities = 29/217 (13%), Positives = 52/217 (23%), Gaps = 53/217 (24%)
Query: 233 GADLSIKDADQRSALHIA---CCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTS 289
+ + ++ L A +G + LL + + V
Sbjct: 33 TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK---DSGNPKPLVNAQCT----- 84
Query: 290 EKSTEGGYDLVGA-------VVRLL-------NLTTEKDKDDLRSVLFPAM----LQSAV 331
++ +G L A V+LL +L L A
Sbjct: 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA 144
Query: 332 MTGDLKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQ--EITQKLDIDGVPSLFQGADLS 389
T V + L+ N Q + D G L +
Sbjct: 145 CTKQWD------------VVTY--------LLENPHQPASLEAT-DSLGNTVLH-ALVMI 182
Query: 390 IKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
++ + SAL I +G + L +
Sbjct: 183 ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219
Score = 53.6 bits (129), Expect = 2e-08
Identities = 35/208 (16%), Positives = 58/208 (27%), Gaps = 65/208 (31%)
Query: 244 RSALHIACCEGHTDIVKYLL--------LNGASVHEKDRVQLTVLTNIRGELTSEKSTEG 295
R L G + + LL S + + T L K+
Sbjct: 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM---------KAVLN 53
Query: 296 GYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYEFSM 355
D V A + L LQ +G+ K + +
Sbjct: 54 LQDGVNACIMPL-------------------LQIDKDSGNPK---PLVNAQCTDEFYQGH 91
Query: 356 NP-HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQ-------------RSALHI 401
+ H+ +L + + L + GAD+ ++ + L +
Sbjct: 92 SALHIAIEKRSL--QCVKLL-------VENGADVHLRACGRFFQKHQGTCFYFGELPLSL 142
Query: 402 ACCEGHTDIVKYLLLNG---ASVHEKDR 426
A C D+V YLL N AS+ D
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDS 170
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 81.8 bits (202), Expect = 1e-17
Identities = 32/217 (14%), Positives = 57/217 (26%), Gaps = 51/217 (23%)
Query: 218 ITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQL 277
+ D + A + ++ALHIA + +V L+ NGA V
Sbjct: 77 LDVARKTDSLKQF-VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135
Query: 278 TVLTNIRGELTSEKSTEGGYDLVGA-------VVRLL--------NLTTEKDKDDLRSVL 322
T R G L A +V+ L ++ + +D +VL
Sbjct: 136 FKKTKGRP-----GFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVG-NTVL 188
Query: 323 FPAMLQSAVMTGDLKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSL 382
T + + ++ I G
Sbjct: 189 HAL----------------------------VEVADNTVDNTKFVTSMYNEILILGAKLH 220
Query: 383 FQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 419
I + + L +A G ++ Y+L
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257
Score = 57.1 bits (138), Expect = 2e-09
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 370 ITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ D + A + ++ALHIA + +V L+ NGA V
Sbjct: 77 LDVARKTDSLKQF-VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN 132
Score = 47.1 bits (112), Expect = 4e-06
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 381 SLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNG---ASVHEKDR 426
F+ L +A C IVK+LL N A + +D
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182
Score = 39.4 bits (92), Expect = 0.001
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 384 QGADLSIKDADQ-RSALHIACC---EGHTDIVKYLLLNGASVHEKDR 426
+ D KD + ++ L A G D + LL +
Sbjct: 42 RLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88
Score = 35.9 bits (83), Expect = 0.015
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 384 QGADLSIKDADQRSALHIACCEGH---------TDIVKYLLLNGASVHEK 424
Q AD+S +D+ + LH T + +L+ GA +H
Sbjct: 173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222
Score = 30.5 bits (69), Expect = 0.99
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 239 KDADQRSALHIACCEGHTD 257
++ + H A H
Sbjct: 255 REIHEPECRHAAAHHHHHH 273
Score = 29.0 bits (65), Expect = 2.9
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 7/49 (14%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLL-------NGASVHEKDR 274
A R ++ A + + ++ LL KD
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDP 51
Score = 29.0 bits (65), Expect = 2.9
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 7/49 (14%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLL-------NGASVHEKDR 426
A R ++ A + + ++ LL KD
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDP 51
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 77.8 bits (193), Expect = 3e-17
Identities = 35/188 (18%), Positives = 62/188 (32%), Gaps = 69/188 (36%)
Query: 246 ALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKSTEGGYDLVGAVVR 305
L A G + + LL N +V+ ++ T L + + E + R
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-----VMKLGNPE--------IAR 54
Query: 306 LL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYEFSMNPH 358
L + KD+ +V+ A +
Sbjct: 55 RLLLRGANPD---LKDRTG-FAVIHDA----------------------------ARAGF 82
Query: 359 LTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNG 418
L + Q L L AD++I+D + LH+A EGH +V++L+ +
Sbjct: 83 L---------DTLQTL-------LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 419 AS-VHEKD 425
AS V ++
Sbjct: 127 ASNVGHRN 134
Score = 59.7 bits (146), Expect = 5e-11
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+GA+ +KD + +H A G D ++ LL A V+ +D L
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Score = 57.4 bits (140), Expect = 4e-10
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+++ ++ R+AL + G+ +I + LLL GA+ KDR V+
Sbjct: 27 NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVI 74
Score = 57.4 bits (140), Expect = 4e-10
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS-VHEKDRVQLTVL 280
AD++I+D + LH+A EGH +V++L+ + AS V ++ T
Sbjct: 92 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Score = 55.9 bits (136), Expect = 1e-09
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+++ ++ R+AL + G+ +I + LLL GA+ KDR
Sbjct: 27 NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDR 68
Score = 47.8 bits (115), Expect = 7e-07
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 232 QGA-DLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
A ++ ++ +A +A G ++V + NGA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 47.8 bits (115), Expect = 7e-07
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 384 QGA-DLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 419
A ++ ++ +A +A G ++V + NGA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 79.6 bits (197), Expect = 3e-17
Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 79/221 (35%)
Query: 232 QGADLSI-----KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGE 286
+L + + ++ALHIA + ++V+ LL GASV + +
Sbjct: 59 AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI 118
Query: 287 LTSE---------KSTEGGYDLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSA 330
E S E +VRLL +D +V L
Sbjct: 119 YYGEHPLSFAACVGSEE--------IVRLLIEHGADIR---AQDSLG-NTV-----LHIL 161
Query: 331 VMTGDLKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSI 390
++ + + + N+ L+S +
Sbjct: 162 ILQPN----KTFACQMYNL------------LLSY-------------------DGGDHL 186
Query: 391 K------DADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
K + + +A EG+ + ++L+ +
Sbjct: 187 KSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAH 227
Score = 74.9 bits (185), Expect = 1e-15
Identities = 32/220 (14%), Positives = 56/220 (25%), Gaps = 79/220 (35%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASV-----HEKDRVQLTVLTNIR 284
F+G ++ + A +ALHIA + + L+ + + T L
Sbjct: 24 KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL---- 79
Query: 285 GELTSEK-STEGGYDLVGAVVRLL-------NLTTEKDKDDLRSVLFPAM-------LQS 329
+ + +VR L + + + + L
Sbjct: 80 -HIAVINQNVN--------LVRALLARGASVS---ARATGSVFHYRPHNLIYYGEHPLSF 127
Query: 330 AVMTGDLKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLS 389
A G IV LI + GAD+
Sbjct: 128 AACVGSE-----------EIV-RL--------LIEH-------------------GADIR 148
Query: 390 IKDADQRSALHIACCEGHTDIV----KYLLLNGASVHEKD 425
+D+ + LHI + + LL H K
Sbjct: 149 AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS 188
Score = 56.1 bits (136), Expect = 3e-09
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 384 QGADLSI-----KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+L + + ++ALHIA + ++V+ LL GASV +
Sbjct: 59 AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARAT 106
Score = 44.5 bits (106), Expect = 2e-05
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 245 SALHIACCEGHTDIV-KYLLLNGASVHEKDRVQLTVL 280
S L +A E + K L G VH++ + T L
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL 41
Score = 42.6 bits (101), Expect = 1e-04
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 397 SALHIACCEGHTDIV-KYLLLNGASVHEKD 425
S L +A E + K L G VH++
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRG 34
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 74.3 bits (184), Expect = 2e-16
Identities = 53/184 (28%), Positives = 73/184 (39%), Gaps = 69/184 (37%)
Query: 244 RSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK-STEGGYDLVGA 302
R+ LH+A GH ++VK LL GA V+ KD+ T L L + E
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH-----LAARNGHLE-------- 49
Query: 303 VVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYEFSM 355
VV+LL N KDK+ R+ L A +
Sbjct: 50 VVKLLLEAGADVN---AKDKNG-RTPLHLA----------------------------AR 77
Query: 356 NPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLL 415
N HL E+ + L L GAD++ KD + R+ LH+A GH ++VK LL
Sbjct: 78 NGHL---------EVVKLL-------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 416 LNGA 419
GA
Sbjct: 122 EAGA 125
Score = 61.2 bits (150), Expect = 7e-12
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GAD++ KD + R+ LH+A GH ++VK LL GA V+ KD
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Score = 61.2 bits (150), Expect = 7e-12
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ KD + R+ LH+A GH ++VK LL GA V+ KD
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Score = 60.8 bits (149), Expect = 1e-11
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ KD + R+ LH+A GH ++VK LL GA V+ KD+ T L
Sbjct: 24 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Score = 60.4 bits (148), Expect = 1e-11
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ KD + R+ LH+A GH ++VK LL GA V+ KD
Sbjct: 24 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Score = 52.7 bits (128), Expect = 7e-09
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
GAD++ KD + R+ LH+A GH ++VK LL GA
Sbjct: 90 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 49.3 bits (119), Expect = 1e-07
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 396 RSALHIACCEGHTDIVKYLLLNGASVHEKD 425
R+ LH+A GH ++VK LL GA V+ KD
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKD 32
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 77.5 bits (192), Expect = 3e-16
Identities = 33/178 (18%), Positives = 50/178 (28%), Gaps = 55/178 (30%)
Query: 249 IACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKSTEGGYDLVGAVVRLLN 308
+ H L+ G+ + D Q + + S G + L N
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGM----------DGSKPAGPRDFPGIRLLSN 50
Query: 309 LTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQ 368
D S + A +++ H
Sbjct: 51 PLMGDAVSD-WSPMHEA----------------------------AIHGHQ--------- 72
Query: 369 EITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ L + QG ++I AD S LH AC GH VK LL +GA V+
Sbjct: 73 LSLRNL-------ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 123
Score = 64.4 bits (158), Expect = 8e-12
Identities = 21/49 (42%), Positives = 25/49 (51%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
QG ++I AD S LH AC GH VK LL +GA V+ T L
Sbjct: 81 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL 129
Score = 60.2 bits (147), Expect = 2e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GA ++ AD + L AC G D V LL +GASV +
Sbjct: 114 HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155
Score = 59.4 bits (145), Expect = 4e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
G ++ K + + L++AC VK LL +GA V++
Sbjct: 179 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 220
Score = 59.4 bits (145), Expect = 4e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
G ++ K + + L++AC VK LL +GA V++
Sbjct: 179 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 220
Score = 58.3 bits (142), Expect = 9e-10
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 217 EITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQ 276
+KL L GAD++ + Q S LH ++ L+ GA K+
Sbjct: 204 ACVKKL-------LESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG 255
Query: 277 LTVL 280
+
Sbjct: 256 KRPV 259
Score = 57.9 bits (141), Expect = 1e-09
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 369 EITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+KL L GAD++ + Q S LH ++ L+ GA K+
Sbjct: 204 ACVKKL-------LESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKN 252
Score = 56.7 bits (138), Expect = 3e-09
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 235 DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L S +H A GH ++ L+ G +V+ ++ L
Sbjct: 51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPL 96
Score = 55.6 bits (135), Expect = 6e-09
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GA + + D S +H A GH + V L+ G ++ K T L
Sbjct: 147 HGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 194
Score = 55.2 bits (134), Expect = 1e-08
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GA + + D S +H A GH + V L+ G ++ K
Sbjct: 147 HGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKI 187
Score = 47.9 bits (115), Expect = 3e-06
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHE 271
GAD K+A+ + + + E + +L GAS+ +
Sbjct: 244 FGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLPK 282
Score = 47.9 bits (115), Expect = 3e-06
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHE 423
GAD K+A+ + + + E + +L GAS+ +
Sbjct: 244 FGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLPK 282
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 76.3 bits (189), Expect = 3e-16
Identities = 31/195 (15%), Positives = 51/195 (26%), Gaps = 71/195 (36%)
Query: 244 RSALHIACCEGHTDIV-KYLLLNGASVHEKDRVQLTVLTNIRGELTSEK-STEGGYDLVG 301
LH AC E V + L + + +KD+ L + + E
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL-----HWSVSFQAHE------- 50
Query: 302 AVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYEFS 354
+ L NL D + A
Sbjct: 51 -ITSFLLSKMENVNLDDYPDDSG-WTPFHIA----------------------------C 80
Query: 355 MNPHLTT---LISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIV 411
+L L DL+ + LH+A + ++
Sbjct: 81 SVGNLEVVKSLYDR-----------------PLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 412 KYLLLNGASVHEKDR 426
++L+ NGASV KD+
Sbjct: 124 QFLIENGASVRIKDK 138
Score = 72.5 bits (179), Expect = 8e-15
Identities = 38/208 (18%), Positives = 59/208 (28%), Gaps = 74/208 (35%)
Query: 232 QGADLSIKDA---DQRSALHIACCEGHTDIVKYLLLN--GASVHEKDRVQLTVLTNIRGE 286
+ ++++ D + HIAC G+ ++VK L +++ +T L
Sbjct: 58 KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL-----H 112
Query: 287 LTSEK-STEGGYDLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKR 338
L K E V + L KDK + L A G LK
Sbjct: 113 LAVGKKWFE--------VSQFLIENGASVR---IKDKFNQIP------LHRAASVGSLK- 154
Query: 339 MEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSA 398
++ E L + + D G +
Sbjct: 155 ----------LI-EL--------LCGLGKSAVNWQ-DKQG-----------------WTP 177
Query: 399 LHIACCEGHTDIVKYLLLN-GASVHEKD 425
L A EGH D L+ GA D
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Score = 62.1 bits (152), Expect = 2e-11
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 229 SLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
DL+ + LH+A + ++ ++L+ NGASV KD+ L
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPL 144
Score = 57.8 bits (141), Expect = 7e-10
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRV 275
+ + L KD D R LH + +I +LL +V+ D
Sbjct: 25 KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Score = 37.0 bits (87), Expect = 0.006
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLN 265
GA+ + D A +A + + K+ L N
Sbjct: 198 GAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 74.4 bits (184), Expect = 4e-16
Identities = 32/189 (16%), Positives = 52/189 (27%), Gaps = 70/189 (37%)
Query: 246 ALHIACCEGHTDIVKYLLL-NGASVHEKDRVQLTVLTNIRGELTSEKSTEGGYDLVGAVV 304
L A G V+ LL +R T L + ST +
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-----VMMFGSTA--------IA 51
Query: 305 RLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYEFSMNP 357
L N +D S + A +
Sbjct: 52 LELLKQGASPN---VQDTSG-TSPVHDA----------------------------ARTG 79
Query: 358 HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLN 417
L + + L + GAD+++ D +H+A EGHT +V + L
Sbjct: 80 FL---------DTLKVL-------VEHGADVNVPDGTGALPIHLAVQEGHTAVVSF-LAA 122
Query: 418 GASVHEKDR 426
+ +H +D
Sbjct: 123 ESDLHRRDA 131
Score = 62.0 bits (152), Expect = 9e-12
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
QGA +++D S +H A G D +K L+ +GA V+ D +
Sbjct: 57 QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 105
Score = 59.3 bits (145), Expect = 7e-11
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD+++ D +H+A EGHT +V + L + +H +D LT L
Sbjct: 90 HGADVNVPDGTGALPIHLAVQEGHTAVVSF-LAAESDLHRRDARGLTPL 137
Score = 58.6 bits (143), Expect = 1e-10
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ ++AL + G T I LL GAS + +D + +
Sbjct: 26 LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPV 72
Score = 47.8 bits (115), Expect = 6e-07
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLL 263
L +DL +DA + L +A G D+V L
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 47.8 bits (115), Expect = 6e-07
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLL 415
L +DL +DA + L +A G D+V L
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 78.4 bits (193), Expect = 5e-16
Identities = 23/218 (10%), Positives = 51/218 (23%), Gaps = 40/218 (18%)
Query: 232 QGADLSIKD--ADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR--------------- 274
+ A+ A +A GH ++ L +
Sbjct: 150 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 209
Query: 275 -----VQLTVLTNIRGELTSEKSTEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQS 329
+ + + E G V + + K+ +
Sbjct: 210 GHHNVINFLLDCPVMLAYAEIHEFEYGEK---YVNPFIARHVNRLKE----------MHD 256
Query: 330 AVMTGDLKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDG-VPSLFQGADL 388
A + + ++ V+ L LI + + + +P + A
Sbjct: 257 AFKLSNPDGVFDL---VTKSECLQGFYM-LRNLIRRNDEVLLDDIRFLLSIPGIKALAPT 312
Query: 389 SIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ D L +A G+ LL + +
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA 350
Score = 55.3 bits (133), Expect = 1e-08
Identities = 21/202 (10%), Positives = 44/202 (21%), Gaps = 71/202 (35%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
+ + A+ A +A GH ++ L +
Sbjct: 117 SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM-----------------I 159
Query: 292 STEGGYDLVGA-------VVR-LLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIK 343
E + A V+ L L + +++ + A +AV G
Sbjct: 160 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG--------- 210
Query: 344 GYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIAC 403
H + L L L+ +
Sbjct: 211 --------------HH---------NVINFL-------LDCPVMLAYAEIH-------EF 233
Query: 404 CEGHTDIVKYLLLNGASVHEKD 425
G + ++ + + E
Sbjct: 234 EYGEKYVNPFIARHVNRLKEMH 255
Score = 54.2 bits (130), Expect = 3e-08
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 227 VPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
+P + A + D L +A G+ LL + +
Sbjct: 303 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA 350
Score = 49.6 bits (118), Expect = 1e-06
Identities = 25/200 (12%), Positives = 47/200 (23%), Gaps = 59/200 (29%)
Query: 234 ADLSIKDADQRSALHIAC---CEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSE 290
+D K +A C D + LL + V
Sbjct: 83 SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFR--------- 133
Query: 291 KSTEGGYDLVGAVVR-LLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNI 349
+ E G+ V+ L L + +++ + A + A G
Sbjct: 134 LAAENGHL---HVLNRLCELAPTEIMAMIQAENYHA-FRLAAENG--------------- 174
Query: 350 VYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQR--SALHIACCE-G 406
HL + +L + A A G
Sbjct: 175 --------HL---------HVLNRL-------CELAPTEATAMIQAENYYAFRWAAVGRG 210
Query: 407 HTDIVKYLLLNGASVHEKDR 426
H +++ +LL + +
Sbjct: 211 HHNVINFLLDCPVMLAYAEI 230
Score = 36.8 bits (85), Expect = 0.010
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 238 IKDADQRSALHIACCEGHTDIVKYLLLNGASVH 270
+ + + +I G D+ L + H
Sbjct: 344 VLALTKANNYYINETGGRLDLRAVALEHHHHHH 376
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 75.7 bits (187), Expect = 5e-16
Identities = 28/195 (14%), Positives = 55/195 (28%), Gaps = 50/195 (25%)
Query: 244 RSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEKSTEGGYDLVGAV 303
+ + A L + + + T +++G L+ +
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWK--------GTSKGRTGLIPS- 63
Query: 304 VRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEI--KGYVSNIVYEF-------- 353
N E+ + L A G+L + E N + +
Sbjct: 64 ----NYVAEQAESIDNP------LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWA 113
Query: 354 SMNPHLTT---LISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDI 410
H L + +L+ ++ +ALH A +G+ DI
Sbjct: 114 CHGGHKDIVEMLFTQ------------------PNIELNQQNKLGDTALHAAAWKGYADI 155
Query: 411 VKYLLLNGASVHEKD 425
V+ LL GA ++
Sbjct: 156 VQLLLAKGARTDLRN 170
Score = 62.3 bits (152), Expect = 2e-11
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+L+ ++ +ALH A +G+ DIV+ LL GA ++ +
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF 177
Score = 58.8 bits (143), Expect = 3e-10
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLN-GASVHEKDRVQLTVL 280
++ D +AL+ AC GH DIV+ L +++++++ T L
Sbjct: 95 NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144
Score = 58.4 bits (142), Expect = 5e-10
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 226 GVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
G L ++ + + LH A G+ ++ L N V+ D+ T L
Sbjct: 56 GRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTAL 110
Score = 58.4 bits (142), Expect = 5e-10
Identities = 6/43 (13%), Positives = 17/43 (39%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
+GA +++ +++ A +A ++K A +
Sbjct: 162 KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA 204
Score = 57.6 bits (140), Expect = 8e-10
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 378 GVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
G L ++ + + LH A G+ ++ L N V+ D+
Sbjct: 56 GRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK 104
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 72.4 bits (178), Expect = 3e-15
Identities = 29/206 (14%), Positives = 54/206 (26%), Gaps = 61/206 (29%)
Query: 232 QGADLSI---KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELT 288
+G + K L E I +L+ GA + + + T+ +
Sbjct: 28 KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL----- 82
Query: 289 SEKSTEGGYDLVG--AVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRM 339
GG D+ G + ++ K + V+F + +
Sbjct: 83 ---FQGGGNDITGTTELCKIFLEKGADIT---ALYKPY-KIVVF-----KNIFNYFVDEN 130
Query: 340 EEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSAL 399
E I +Y+ + S G L IKD +AL
Sbjct: 131 EMI------PLYKL--------IFSQ------------------SGLQLLIKDKWGLTAL 158
Query: 400 HIACCEGHTDIVKYLLLNGASVHEKD 425
+K + + K+
Sbjct: 159 EFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 57.4 bits (139), Expect = 6e-10
Identities = 25/201 (12%), Positives = 49/201 (24%), Gaps = 69/201 (34%)
Query: 242 DQRSALHIACCEGHTDIVKYLLLNGASV---HEKDRVQLTVLTNIRGELTSEKSTEGGYD 298
+ + A G + L G K + VL N + E Y
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRN--------NNDEARYK 56
Query: 299 LV------GAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYE 352
+ GA ++ + K+ ++ FP D+ E+
Sbjct: 57 ISMFLINKGADIK------SRTKEG-TTLFFPLFQGGGN---DITGTTELCKI------- 99
Query: 353 FSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTD--- 409
+ GAD++ + + D
Sbjct: 100 ---------FLEK-------------------GADITALYKPYKIVVFKNIFNYFVDENE 131
Query: 410 ---IVKYLLL-NGASVHEKDR 426
+ K + +G + KD+
Sbjct: 132 MIPLYKLIFSQSGLQLLIKDK 152
Score = 53.1 bits (128), Expect = 2e-08
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDI------VKYLLLNGASVHEKDRVQLTVL 280
+ +GAD+ + + + G DI K L GA + + V+
Sbjct: 62 INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A
{Wolinella succinogenes} SCOP: c.88.1.1
Length = 330
Score = 74.9 bits (185), Expect = 4e-15
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYETGKSLTDVGVI 62
G+I G+GN L+ A + GV++ S+ G+T+ E +G +
Sbjct: 242 GIIHAGMGNGNPF---PLTQNALEKAAKSGVVVARSSRVGSGSTTQEAEVD--DKKLGFV 296
Query: 63 TGYDMTPESALTKLSYVLSKSD 84
+ P+ A L L+K+
Sbjct: 297 ATESLNPQKARVLLMLALTKTS 318
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison
hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB:
3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Length = 326
Score = 73.8 bits (182), Expect = 8e-15
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYETGKSLTDVGVI 62
G++ G+GN + + L +A + G +V S+ G T+ + G +
Sbjct: 238 GIVSAGVGNGNLY---KSVFDTLATAAKTGTAVVRSSRVPTGATT--QDAEVDDAKYGFV 292
Query: 63 TGYDMTPESALTKLSYVLSKSD 84
+ P+ A L L+++
Sbjct: 293 ASGTLNPQKARVLLQLALTQTK 314
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni
subsp}
Length = 334
Score = 73.4 bits (181), Expect = 1e-14
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYETGKSLTDVGVI 62
G+++ G+G+ + ++LK ++G+ +V S+ G S +G I
Sbjct: 248 GIVVAGSGAGSIH---KNQKDVLKELLKKGLKVVVSSRVVAG----CVAVSDSDEKLGFI 300
Query: 63 TGYDMTPESALTKLSYVLSKSD 84
+ D+ P+ A L L+K+
Sbjct: 301 SAEDLNPQKARVLLMLALTKTS 322
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Length = 332
Score = 71.8 bits (177), Expect = 4e-14
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYETGKSLTDVGVI 62
GV++ G+GN A L+ ++ A++ GV+IV S+ G ++ G I
Sbjct: 245 GVVIAGVGNGNVS---AGFLKAMQEASQMGVVIVRSSRVGSGGVTS---GEIDDKAYGFI 298
Query: 63 TGYDMTPESALTKLSYVLSKSD 84
T ++ P+ A L L+K++
Sbjct: 299 TSDNLNPQKARVLLQLALTKTN 320
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 70.2 bits (172), Expect = 7e-14
Identities = 40/237 (16%), Positives = 74/237 (31%), Gaps = 55/237 (23%)
Query: 209 ALNSSLPQEITQKLDID-----GVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLL 263
LN S + T + +D G F + ++ALHIA V+ L+
Sbjct: 54 LLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLV 113
Query: 264 LNGASVHEKDRVQLTVLTNIRGELTSEKSTEGGYDLVGA-------VVRLL--------N 308
GA VH + R + + G G L A +V L +
Sbjct: 114 EKGADVHAQARGRFFQPKDEGG-----YFYFGELPLSLAACTNQPHIVHYLTENGHKQAD 168
Query: 309 LTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQ 368
L +D +V L + V D E +V+ + L+
Sbjct: 169 L-RRQDSRG-NTV-----LHALVAIADNT--RENTKFVTKMY---------DLLLIKC-A 209
Query: 369 EITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
++ +++ ++ + D S L +A G I ++++ +
Sbjct: 210 KLFPDTNLE-----------ALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAH 255
Score = 51.3 bits (123), Expect = 1e-07
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 386 ADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ ++ALHIA V+ L+ GA VH + R
Sbjct: 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124
Score = 40.5 bits (95), Expect = 5e-04
Identities = 5/39 (12%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 238 IKDADQRSALHIA---CCEGHTDIVKYLLLNGASVHEKD 273
+K ++ I +G ++ +LL + + +++
Sbjct: 1 MKVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE 39
Score = 40.5 bits (95), Expect = 5e-04
Identities = 5/39 (12%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 390 IKDADQRSALHIA---CCEGHTDIVKYLLLNGASVHEKD 425
+K ++ I +G ++ +LL + + +++
Sbjct: 1 MKVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE 39
Score = 34.0 bits (78), Expect = 0.069
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 7/49 (14%)
Query: 384 QGADLSIKDADQRS----ALHIA---CCEGHTDIVKYLLLNGASVHEKD 425
L+ ++ + S L A G D + LL
Sbjct: 31 HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A
{Acinetobacter glutaminasificans} SCOP: c.88.1.1
Length = 331
Score = 69.6 bits (171), Expect = 3e-13
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYETGKSLTDVGVI 62
+I G+G+ + E+ K +E+G+ IV S+ ++G + G I
Sbjct: 242 AIIHAGTGNGSMANYLVP--EVRKLHDEQGLQIVRSSRVAQGFVL--RNAEQPDDKYGWI 297
Query: 63 TGYDMTPESALTKLSYVLSKSD 84
+D+ P+ A ++ L+K++
Sbjct: 298 AAHDLNPQKARLLMALALTKTN 319
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A
{Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A*
3pga_1
Length = 337
Score = 68.8 bits (169), Expect = 4e-13
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYETGKSLTDVGVI 62
+I G+G+ + ++ L+ + G I+ S ++G + + +
Sbjct: 248 ALIHAGTGNGSVS---SRVVPALQQLRKNGTQIIRSSHVNQGG-FVLRNAEQPDDKNDWV 303
Query: 63 TGYDMTPESALTKLSYVLSKSD 84
+D+ PE A ++K+
Sbjct: 304 VAHDLNPEKARILAMVAMTKTQ 325
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 65.7 bits (161), Expect = 2e-12
Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 69/203 (33%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSEK 291
+ D S+ + + +ALH A C GHT+IVK+L+ G +V+ D T L +
Sbjct: 59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL-----HCAASC 113
Query: 292 -STEGGYDLVGAVVRLL-------NLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIK 343
+ + V + L T D A + G
Sbjct: 114 NNVQ--------VCKFLVESGAAVFAMTYSDMQ------TAADKCEEMEEG--------- 150
Query: 344 GYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIAC 403
+ + +Q L + I + AL
Sbjct: 151 --------------YT---------QCSQFL-------YGVQEKMGIMNKGVIYALWDYE 180
Query: 404 CEGHTDIVKYLLLNGASVHEKDR 426
+ ++ + G + R
Sbjct: 181 PQNDDEL---PMKEGDCMTIIHR 200
Score = 54.5 bits (132), Expect = 1e-08
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
G + + L + EG D+V+ ++ + +T L
Sbjct: 27 HGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITAL 74
Score = 53.8 bits (130), Expect = 2e-08
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
G + + L + EG D+V+ ++ +
Sbjct: 27 HGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN 67
Score = 44.5 bits (106), Expect = 2e-05
Identities = 3/34 (8%), Positives = 8/34 (23%)
Query: 240 DADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ + +L + +G V
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP 35
Score = 44.5 bits (106), Expect = 2e-05
Identities = 3/34 (8%), Positives = 8/34 (23%)
Query: 392 DADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ + +L + +G V
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP 35
Score = 31.8 bits (73), Expect = 0.34
Identities = 7/58 (12%), Positives = 16/58 (27%), Gaps = 10/58 (17%)
Query: 217 EITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
+ +Q L + I + AL + ++ + G + R
Sbjct: 153 QCSQFL-------YGVQEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIHR 200
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 65.5 bits (161), Expect = 3e-12
Identities = 21/49 (42%), Positives = 25/49 (51%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
QG ++I AD S LH AC GH VK LL +GA V+ T L
Sbjct: 25 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL 73
Score = 65.1 bits (160), Expect = 4e-12
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
QG ++I AD S LH AC GH VK LL +GA V+
Sbjct: 25 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 67
Score = 59.8 bits (146), Expect = 3e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GA ++ AD + L AC G D V LL +GASV +
Sbjct: 58 HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 99
Score = 59.8 bits (146), Expect = 3e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GA ++ AD + L AC G D V LL +GASV +
Sbjct: 58 HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 99
Score = 59.0 bits (144), Expect = 4e-10
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
G ++ K + + L++AC VK LL +GA V + + Q + L
Sbjct: 123 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPL 170
Score = 58.6 bits (143), Expect = 7e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
G ++ K + + L++AC VK LL +GA V++
Sbjct: 123 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 164
Score = 58.2 bits (142), Expect = 7e-10
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 217 EITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+KL L GAD++ + Q S LH ++ L+ GA K+
Sbjct: 148 ACVKKL-------LESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKN 196
Score = 58.2 bits (142), Expect = 7e-10
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 369 EITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+KL L GAD++ + Q S LH ++ L+ GA K+
Sbjct: 148 ACVKKL-------LESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKN 196
Score = 57.1 bits (139), Expect = 2e-09
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GA + ++D S +H A GH + V L+ G ++ K T L
Sbjct: 91 HGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 138
Score = 55.9 bits (136), Expect = 4e-09
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GA + ++D S +H A GH + V L+ G ++ K
Sbjct: 91 HGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 131
Score = 54.7 bits (133), Expect = 1e-08
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ GAD K+A+ + + + E + + L +L +
Sbjct: 186 MDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPSLMQLCRLRIR 234
Score = 53.6 bits (130), Expect = 3e-08
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 244 RSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
S +H A GH ++ L+ G +V+ ++ L
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPL 40
Score = 52.8 bits (128), Expect = 5e-08
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
L + S+ + + H I K +L
Sbjct: 217 LEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 52.8 bits (128), Expect = 5e-08
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 419
L + S+ + + H I K +L
Sbjct: 217 LEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 52.0 bits (126), Expect = 1e-07
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ GAD K+A+ + + + E + + L
Sbjct: 186 MDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPSLMQ 227
Score = 51.7 bits (125), Expect = 1e-07
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 396 RSALHIACCEGHTDIVKYLLLNGASVHEKD 425
S +H A GH ++ L+ G +V+
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIIT 33
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 63.6 bits (156), Expect = 3e-12
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GAD + + SAL +AC +G+TDIVK LL G V+E D
Sbjct: 58 NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Score = 63.6 bits (156), Expect = 3e-12
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD + + SAL +AC +G+TDIVK LL G V+E D
Sbjct: 58 NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Score = 63.2 bits (155), Expect = 4e-12
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
Q ++ D + + L A G +V++LL NGA + + + L
Sbjct: 25 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 73
Score = 62.0 bits (152), Expect = 9e-12
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
Q ++ D + + L A G +V++LL NGA
Sbjct: 25 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Score = 61.3 bits (150), Expect = 2e-11
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
G D++ D + + L A H VK LL +GA +
Sbjct: 91 CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132
Score = 61.3 bits (150), Expect = 2e-11
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
G D++ D + + L A H VK LL +GA +
Sbjct: 91 CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132
Score = 61.3 bits (150), Expect = 2e-11
Identities = 6/43 (13%), Positives = 20/43 (46%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
GAD +I+ +++ +A G+ + + + + + + +
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 61.3 bits (150), Expect = 2e-11
Identities = 6/43 (13%), Positives = 20/43 (46%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD +I+ +++ +A G+ + + + + + + +
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 48.9 bits (118), Expect = 3e-07
Identities = 3/30 (10%), Positives = 10/30 (33%)
Query: 244 RSALHIACCEGHTDIVKYLLLNGASVHEKD 273
++H +G + + ++ D
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTD 33
Score = 48.9 bits (118), Expect = 3e-07
Identities = 3/30 (10%), Positives = 10/30 (33%)
Query: 396 RSALHIACCEGHTDIVKYLLLNGASVHEKD 425
++H +G + + ++ D
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTD 33
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 62.4 bits (153), Expect = 4e-12
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
A ++ S LH A GH DIVK LL GAS + + L +
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 62.1 bits (152), Expect = 5e-12
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
G+D ++KD + LH AC GH +V+ LL + A V+
Sbjct: 32 NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Score = 62.1 bits (152), Expect = 5e-12
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
G+D ++KD + LH AC GH +V+ LL + A V+
Sbjct: 32 NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Score = 60.9 bits (149), Expect = 1e-11
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
A ++ S LH A GH DIVK LL GAS + +
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Score = 58.2 bits (142), Expect = 1e-10
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
G D + + LHIA +G V+YLL NG+ + KD T L
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPL 47
Score = 57.4 bits (140), Expect = 2e-10
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
G D + + LHIA +G V+YLL NG+ + KD
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD 40
Score = 49.0 bits (118), Expect = 2e-07
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 268
GA + + + E ++ N +S
Sbjct: 98 YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 49.0 bits (118), Expect = 2e-07
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 420
GA + + + E ++ N +S
Sbjct: 98 YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 64.6 bits (158), Expect = 4e-12
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 209 ALNSSLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 268
AL L E+ Q+ + + D S + + +ALH A C + IV +L+ GA+
Sbjct: 29 ALTGEL--EVVQQA-------VKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN 79
Query: 269 VHEKD 273
V+ D
Sbjct: 80 VNSPD 84
Score = 64.2 bits (157), Expect = 5e-12
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ D S + + +ALH A C + IV +L+ GA+V+ D
Sbjct: 43 EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Score = 60.0 bits (146), Expect = 2e-10
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GA+++ D+ + LH A T I L+ +GA++
Sbjct: 76 AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117
Score = 60.0 bits (146), Expect = 2e-10
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GA+++ D+ + LH A T I L+ +GA++
Sbjct: 76 AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117
Score = 53.4 bits (129), Expect = 2e-08
Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 232 QGADLSIKDADQRS---ALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ + + L A G ++V+ + + + +T L
Sbjct: 7 KAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITAL 58
Score = 52.3 bits (126), Expect = 6e-08
Identities = 4/45 (8%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 384 QGADLSIKDADQRS---ALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ + + L A G ++V+ + + +
Sbjct: 7 KAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPN 51
Score = 46.9 bits (112), Expect = 4e-06
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 232 QGADLSIKDA-DQRSALHIA--CCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELT 288
GA + D +A EG+ D YL S+ + + L + E
Sbjct: 109 HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG 168
Query: 289 SE 290
E
Sbjct: 169 DE 170
Score = 46.1 bits (110), Expect = 6e-06
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 384 QGADLSIKDA-DQRSALHIA--CCEGHTDIVKYLLLNGASVHEKD 425
GA + D +A EG+ D YL S+ +
Sbjct: 109 HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN 153
Score = 38.8 bits (91), Expect = 0.002
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLL 264
+ + +D + + A G V
Sbjct: 177 ESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF 209
Score = 38.8 bits (91), Expect = 0.002
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLL 416
+ + +D + + A G V
Sbjct: 177 ESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF 209
Score = 38.8 bits (91), Expect = 0.002
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ + ++ AL E D + + +V +D + T
Sbjct: 145 VEQSMGLMNSGAVYALWDYSAE-FGDELSFREGESVTVLRRDGPEETDW 192
Score = 38.4 bits (90), Expect = 0.002
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ + ++ AL E D + + +V +D
Sbjct: 145 VEQSMGLMNSGAVYALWDYSAE-FGDELSFREGESVTVLRRD 185
Score = 30.7 bits (70), Expect = 0.61
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 259 VKYLLLNGASVHEKDRVQLTVLT 281
++ +L S + R +L L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLV 23
Score = 28.4 bits (64), Expect = 3.8
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 411 VKYLLLNGASVHEKDR 426
++ +L S + R
Sbjct: 1 MRSVLRKAGSPRKARR 16
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 60.8 bits (149), Expect = 5e-12
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GAD++ KD + R+ LH+A GH ++VK LL GA V+ KD
Sbjct: 24 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Score = 60.8 bits (149), Expect = 5e-12
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ KD + R+ LH+A GH ++VK LL GA V+ KD
Sbjct: 24 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Score = 53.9 bits (131), Expect = 1e-09
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
GAD++ KD + R+ LH+A GH ++VK LL GA
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 53.9 bits (131), Expect = 1e-09
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 419
GAD++ KD + R+ LH+A GH ++VK LL GA
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 50.8 bits (123), Expect = 2e-08
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 242 DQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ R+ LH+A GH ++VK LL GA V+ KD+ T L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 39
Score = 50.4 bits (122), Expect = 2e-08
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 394 DQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ R+ LH+A GH ++VK LL GA V+ KD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 32
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia
chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A
1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A*
2jk0_A
Length = 327
Score = 65.4 bits (160), Expect = 5e-12
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 3 GVILQTYGSGNFPSNRADLLELLKSANERGVIIVNCSQCSRGTTSNIYETGKSLTDVGVI 62
G++ G+G+ + ++ A E+GV+++ ++ G E + +
Sbjct: 244 GIVYAGMGAGSVS---VRGIAGMRKALEKGVVVMRSTRTGNGIVPPDEE-------LPGL 293
Query: 63 TGYDMTPESALTKLSYVLSKSD 84
+ P A L L+++
Sbjct: 294 VSDSLNPAHARILLMLALTRTS 315
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 61.2 bits (150), Expect = 6e-12
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+GAD++ + D + H+A GH +IVK L GA V+ +
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 60.9 bits (149), Expect = 7e-12
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+GAD++ + D + LH+A GH +IVK LL GA V+ + + T
Sbjct: 31 KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPE 79
Score = 60.1 bits (147), Expect = 1e-11
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+GAD++ + D + LH+A GH +IVK LL GA V+ + +
Sbjct: 31 KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK 73
Score = 60.1 bits (147), Expect = 1e-11
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+GAD++ + D + H+A GH +IVK L GA V+ +
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 55.1 bits (134), Expect = 9e-10
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
G D + LH A GH + VK LL GA V+ + + T L
Sbjct: 1 GHM--WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPL 46
Score = 54.7 bits (133), Expect = 1e-09
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
G D + LH A GH + VK LL GA V+ +
Sbjct: 1 GHM--WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS 39
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 64.8 bits (159), Expect = 7e-12
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL----TNIRGEL 287
D++IKD D + LH A G + + L+ N + ++V T +I G L
Sbjct: 221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYL 280
Query: 288 TS 289
Sbjct: 281 EE 282
Score = 62.5 bits (153), Expect = 4e-11
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+GAD++ + D +ALH AC + + D+VK+L+ NGA++++ D L
Sbjct: 62 RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110
Score = 62.1 bits (152), Expect = 6e-11
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
D++IKD D + LH A G + + L+ N + ++
Sbjct: 221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK 263
Score = 62.1 bits (152), Expect = 6e-11
Identities = 17/42 (40%), Positives = 31/42 (73%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+GAD++ + D +ALH AC + + D+VK+L+ NGA++++ D
Sbjct: 62 RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Score = 60.6 bits (148), Expect = 2e-10
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
GA+++ D + LH A G+ DI +YL+ GA V +
Sbjct: 95 NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS 137
Score = 60.6 bits (148), Expect = 2e-10
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GA+++ D + LH A G+ DI +YL+ GA V +
Sbjct: 95 NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS 137
Score = 59.8 bits (146), Expect = 3e-10
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
+ +ALH+A +G+T+++K L+ V+ KD
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230
Score = 59.8 bits (146), Expect = 3e-10
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ +ALH+A +G+T+++K L+ V+ KD
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230
Score = 54.4 bits (132), Expect = 2e-08
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ +K D AC G T+ V LL GA ++ + LT L
Sbjct: 30 KRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGADINYANVDGLTAL 77
Score = 53.7 bits (130), Expect = 4e-08
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 358 HLTTLISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLN 417
L I + + + + +K D AC G T+ V LL
Sbjct: 13 QLKRWIGSE--TDLEPP-------VVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLER 62
Query: 418 GASVHEKD 425
GA ++ +
Sbjct: 63 GADINYAN 70
Score = 49.8 bits (120), Expect = 7e-07
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 238 IKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ DA Q+ + G ++ ++ K
Sbjct: 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF 38
Score = 49.8 bits (120), Expect = 7e-07
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 390 IKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ DA Q+ + G ++ ++ K
Sbjct: 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF 38
Score = 48.3 bits (116), Expect = 2e-06
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLL-NGASVHEKD 273
QGA + +++ + L IA E ++++ + G +
Sbjct: 128 QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170
Score = 48.3 bits (116), Expect = 2e-06
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLL-NGASVHEKD 425
QGA + +++ + L IA E ++++ + G +
Sbjct: 128 QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170
Score = 46.3 bits (111), Expect = 9e-06
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 236 LSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
++ + D +A D ++L + + T L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTAL 203
Score = 45.2 bits (108), Expect = 2e-05
Identities = 4/39 (10%), Positives = 12/39 (30%)
Query: 388 LSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
++ + D +A D ++L + +
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK 197
Score = 42.9 bits (102), Expect = 1e-04
Identities = 5/42 (11%), Positives = 13/42 (30%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
D+ + ++A +A + + + EK
Sbjct: 254 NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295
Score = 42.9 bits (102), Expect = 1e-04
Identities = 5/42 (11%), Positives = 13/42 (30%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
D+ + ++A +A + + + EK
Sbjct: 254 NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 61.3 bits (150), Expect = 7e-12
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+GAD++ D + L A EGH VK LL GA K LT
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110
Score = 60.9 bits (149), Expect = 9e-12
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+G D++ R LH A G +I+++LLL GA ++ D+ +T L
Sbjct: 29 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Score = 60.5 bits (148), Expect = 1e-11
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+GAD++ D + L A EGH VK LL GA K
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Score = 60.5 bits (148), Expect = 1e-11
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+G D++ R LH A G +I+++LLL GA ++ D
Sbjct: 29 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Score = 48.9 bits (118), Expect = 1e-07
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 239 KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+ A G D VK + G V+
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL 37
Score = 48.9 bits (118), Expect = 1e-07
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 391 KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ A G D VK + G V+
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL 37
Score = 41.2 bits (98), Expect = 8e-05
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVK 260
+GAD ++K D +A + +++
Sbjct: 95 KGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 41.2 bits (98), Expect = 8e-05
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVK 412
+GAD ++K D +A + +++
Sbjct: 95 KGADKTVKGPDGLTAFEATDNQAIKALLQ 123
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 61.2 bits (150), Expect = 9e-12
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ KD + L++A GH +IV+ LL NGA V+ D + T L
Sbjct: 36 NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPL 84
Score = 60.1 bits (147), Expect = 3e-11
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ KD + L++A GH +IV+ LL NGA V+ D
Sbjct: 36 NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Score = 58.9 bits (144), Expect = 6e-11
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ DA + LH+A GH +I + LL +GA V+ +D+ T
Sbjct: 69 NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 58.6 bits (143), Expect = 9e-11
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ DA + LH+A GH +I + LL +GA V+ +D+
Sbjct: 69 NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111
Score = 54.7 bits (133), Expect = 2e-09
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 232 QGADLSIKD-ADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+G+ +D L A G D V+ L+ NGA V+ KD LT L
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPL 51
Score = 53.9 bits (131), Expect = 4e-09
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 384 QGADLSIKD-ADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+G+ +D L A G D V+ L+ NGA V+ KD
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDE 45
Score = 44.3 bits (106), Expect = 7e-06
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLL 263
GAD++ +D ++A I+ G+ D+ + L
Sbjct: 102 HGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 44.3 bits (106), Expect = 7e-06
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLL 415
GAD++ +D ++A I+ G+ D+ + L
Sbjct: 102 HGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 60.3 bits (147), Expect = 1e-11
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ KD + + LH+A GH ++VK LL GA V +D+ T
Sbjct: 46 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF 94
Score = 59.5 bits (145), Expect = 2e-11
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GAD++ KD + + LH+A GH ++VK LL GA V +D+
Sbjct: 46 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
Score = 56.4 bits (137), Expect = 3e-10
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+G+ +D L A G D V+ L+ NGA V KD+ T L
Sbjct: 16 RGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPL 61
Score = 56.0 bits (136), Expect = 3e-10
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+G+ +D L A G D V+ L+ NGA V KD
Sbjct: 16 RGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKD 54
Score = 37.6 bits (88), Expect = 0.001
Identities = 3/25 (12%), Positives = 6/25 (24%)
Query: 250 ACCEGHTDIVKYLLLNGASVHEKDR 274
H L+ G+ +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG 25
Score = 37.6 bits (88), Expect = 0.001
Identities = 3/25 (12%), Positives = 6/25 (24%)
Query: 402 ACCEGHTDIVKYLLLNGASVHEKDR 426
H L+ G+ +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG 25
Score = 35.6 bits (83), Expect = 0.005
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYL 262
GAD+ +D ++A I+ G+ D+ + L
Sbjct: 79 AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 35.6 bits (83), Expect = 0.005
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYL 414
GAD+ +D ++A I+ G+ D+ + L
Sbjct: 79 AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 62.0 bits (152), Expect = 1e-11
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ +DA + LH+A GH +IV+ LL NGA V+ D +T L
Sbjct: 36 NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPL 84
Score = 61.6 bits (151), Expect = 2e-11
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ +DA + LH+A GH +IV+ LL NGA V+ D
Sbjct: 36 NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Score = 60.1 bits (147), Expect = 5e-11
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ D + L +A GH +IV+ LL NGA V+ D T L
Sbjct: 69 NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL 117
Score = 59.7 bits (146), Expect = 6e-11
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GAD++ D + + LH+A GH +IV+ LL NGA V+ +D
Sbjct: 102 NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143
Score = 59.7 bits (146), Expect = 6e-11
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ D + + LH+A GH +IV+ LL NGA V+ +D
Sbjct: 102 NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143
Score = 59.7 bits (146), Expect = 6e-11
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ D + L +A GH +IV+ LL NGA V+ D
Sbjct: 69 NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Score = 56.6 bits (138), Expect = 7e-10
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 232 QGADLSI-KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+G+ +D L A G D V+ L+ NGA V+ +D T L
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPL 51
Score = 55.1 bits (134), Expect = 3e-09
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 384 QGADLSI-KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+G+ +D L A G D V+ L+ NGA V+ +D
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAED 44
Score = 46.6 bits (112), Expect = 2e-06
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLL 263
GAD++ +D ++A I+ G+ D+ + L
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 46.6 bits (112), Expect = 2e-06
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLL 415
GAD++ +D ++A I+ G+ D+ + L
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 61.6 bits (151), Expect = 1e-11
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
G + R+ LH+A EGH +IV+ LL +GA V+ KD +++T L
Sbjct: 56 AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL 104
Score = 60.5 bits (148), Expect = 3e-11
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD++ KD + +ALH A H ++V+ L+ GA VH + + T
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 137
Score = 60.1 bits (147), Expect = 4e-11
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
G + R+ LH+A EGH +IV+ LL +GA V+ KD
Sbjct: 56 AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
Score = 59.7 bits (146), Expect = 4e-11
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD++ KD + +ALH A H ++V+ L+ GA VH +
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130
Score = 58.9 bits (144), Expect = 9e-11
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GA + D S LH+A GH + LL G S + +V T L
Sbjct: 24 NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPL 71
Score = 56.6 bits (138), Expect = 5e-10
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GA + D S LH+A GH + LL G S +
Sbjct: 24 NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Score = 43.1 bits (103), Expect = 3e-05
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYL 262
GAD+ + ++A I+ G+ D+ + L
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 43.1 bits (103), Expect = 3e-05
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYL 414
GAD+ + ++A I+ G+ D+ + L
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 41.6 bits (99), Expect = 9e-05
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 242 DQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
D L A G D V+ L+ NGA D + + L
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPL 38
Score = 40.4 bits (96), Expect = 2e-04
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 394 DQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
D L A G D V+ L+ NGA D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPF-TTD 31
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 62.0 bits (152), Expect = 1e-11
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GAD I ++ SAL +A G+TDIV LL ++ D
Sbjct: 58 WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Score = 62.0 bits (152), Expect = 1e-11
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD I ++ SAL +A G+TDIV LL ++ D
Sbjct: 58 WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Score = 61.3 bits (150), Expect = 2e-11
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ D++I D + + L A H V+ LL GA + + T +
Sbjct: 91 RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM 139
Score = 60.9 bits (149), Expect = 3e-11
Identities = 6/43 (13%), Positives = 20/43 (46%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
+GADL+ + + + +A G+ + + + + + + +
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNL 166
Score = 60.9 bits (149), Expect = 3e-11
Identities = 6/43 (13%), Positives = 20/43 (46%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+GADL+ + + + +A G+ + + + + + + +
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNL 166
Score = 60.5 bits (148), Expect = 3e-11
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ D++I D + + L A H V+ LL GA + +
Sbjct: 91 RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA 132
Score = 58.2 bits (142), Expect = 2e-10
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 232 QGADL-SIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+G +L + D + L A G + V++LL GA H
Sbjct: 24 KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA 66
Score = 58.2 bits (142), Expect = 2e-10
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 384 QGADL-SIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+G +L + D + L A G + V++LL GA H
Sbjct: 24 KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA 66
Score = 44.3 bits (106), Expect = 1e-05
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 246 ALHIACCEGHTDIVKYLLLNGA-SVHEKDRVQLTVL 280
++H +G D +K L G V++ D T L
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPL 40
Score = 43.9 bits (105), Expect = 2e-05
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 398 ALHIACCEGHTDIVKYLLLNGA-SVHEKD 425
++H +G D +K L G V++ D
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPD 33
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 62.1 bits (152), Expect = 1e-11
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
DL+ D S LH AC EG + +V+ L++ GA ++ +R T L
Sbjct: 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPL 76
Score = 62.1 bits (152), Expect = 1e-11
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 217 EITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
+I QKL L AD++ + LH AC G + + L+ NGA V ++
Sbjct: 86 DIVQKL-------LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK 136
Score = 62.1 bits (152), Expect = 1e-11
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 369 EITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+I QKL L AD++ + LH AC G + + L+ NGA V ++
Sbjct: 86 DIVQKL-------LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK 136
Score = 60.9 bits (149), Expect = 3e-11
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
+GA +++ + + LH+A GH DIV+ LL A ++ +
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN 102
Score = 60.9 bits (149), Expect = 3e-11
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+GA +++ + + LH+A GH DIV+ LL A ++ +
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN 102
Score = 59.8 bits (146), Expect = 7e-11
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
DL+ D S LH AC EG + +V+ L++ GA ++ +R
Sbjct: 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR 70
Score = 57.4 bits (140), Expect = 5e-10
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GA +SI + + A + + G +++
Sbjct: 127 NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168
Score = 57.4 bits (140), Expect = 5e-10
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GA +SI + + A + + G +++
Sbjct: 127 NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168
Score = 44.3 bits (106), Expect = 1e-05
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 246 ALHIACCEGHTDIVKYLLLNGAS-VHEKD 273
+ C EG+ V+ L N + +++ D
Sbjct: 8 DIFTQCREGNAVAVRLWLDNTENDLNQGD 36
Score = 44.3 bits (106), Expect = 1e-05
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 398 ALHIACCEGHTDIVKYLLLNGAS-VHEKD 425
+ C EG+ V+ L N + +++ D
Sbjct: 8 DIFTQCREGNAVAVRLWLDNTENDLNQGD 36
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 61.7 bits (151), Expect = 2e-11
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L + D+ D + R+AL G V+ L GA + +D
Sbjct: 63 LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 107
Score = 61.7 bits (151), Expect = 2e-11
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L + D+ D + R+AL G V+ L GA + +D
Sbjct: 63 LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 107
Score = 56.7 bits (138), Expect = 9e-10
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 232 QGADLSIKDA-DQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GADL +D +ALH+A ++V+ L+ GA + +D
Sbjct: 98 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 140
Score = 56.7 bits (138), Expect = 9e-10
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 384 QGADLSIKDA-DQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GADL +D +ALH+A ++V+ L+ GA + +D
Sbjct: 98 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 140
Score = 56.3 bits (137), Expect = 1e-09
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQL 277
GAD+ ++D +AL +A T + G + + + +
Sbjct: 132 LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINV 177
Score = 54.0 bits (131), Expect = 7e-09
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD+ ++D +AL +A T + G + +
Sbjct: 132 LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 47.9 bits (115), Expect = 1e-06
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 229 SLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
S + AD ++ + A + + LL V D
Sbjct: 33 SSYIAAD---VVSEYETPWWTAARKADEQALS-QLLEDRDVDAVD 73
Score = 47.9 bits (115), Expect = 1e-06
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 381 SLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
S + AD ++ + A + + LL V D
Sbjct: 33 SSYIAAD---VVSEYETPWWTAARKADEQALS-QLLEDRDVDAVD 73
Score = 42.9 bits (102), Expect = 5e-05
Identities = 6/43 (13%), Positives = 10/43 (23%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
S + I +GH+ A V +
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE 45
Score = 42.9 bits (102), Expect = 5e-05
Identities = 6/43 (13%), Positives = 10/43 (23%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
S + I +GH+ A V +
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE 45
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 62.6 bits (153), Expect = 2e-11
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
L + D+ D + R+AL G V+ L GA + +D
Sbjct: 64 LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 108
Score = 62.6 bits (153), Expect = 2e-11
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L + D+ D + R+AL G V+ L GA + +D
Sbjct: 64 LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 108
Score = 56.8 bits (138), Expect = 2e-09
Identities = 28/180 (15%), Positives = 51/180 (28%), Gaps = 40/180 (22%)
Query: 232 QGADLSIKDA-DQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLTNIRGELTSE 290
GADL +D +ALH+A ++V+ L+ GA + +D LT L E
Sbjct: 99 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL---------E 149
Query: 291 KSTEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGYVSNIV 350
+ E + + + + ++ + E +G ++
Sbjct: 150 LAREILKTTP--KGNPMQFGRRIGLEKVI----NVLEGQVFEYAEVDEIVEKRGKGKDVE 203
Query: 351 YEFSMNPHLTT---LISNLPQEITQKLDIDGVPSLFQGADLSIKDADQRSALHIACCEGH 407
Y + A+ KD + L A E
Sbjct: 204 YLVRWKDGGDCEWVKGVH-------------------VAEDVAKDYE--DGLEYAVAESV 242
Score = 56.1 bits (136), Expect = 3e-09
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 384 QGADLSIKDA-DQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GADL +D +ALH+A ++V+ L+ GA + +D
Sbjct: 99 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 142
Score = 55.3 bits (134), Expect = 7e-09
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD+ ++D +AL +A T + G + +
Sbjct: 133 LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 174
Score = 48.0 bits (115), Expect = 2e-06
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 227 VPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
VPS + AD+ ++ + A + + LL V D T L
Sbjct: 32 VPSSYIAADV---VSEYETPWWTAARKADEQALS-QLLEDRDVDAVDENGRTAL 81
Score = 47.6 bits (114), Expect = 2e-06
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 379 VPSLFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
VPS + AD+ ++ + A + + LL V D
Sbjct: 32 VPSSYIAADV---VSEYETPWWTAARKADEQALS-QLLEDRDVDAVD 74
Score = 45.3 bits (108), Expect = 1e-05
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ ++ K + ++ + D ++ A KD
Sbjct: 188 EVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD 229
Score = 40.3 bits (95), Expect = 5e-04
Identities = 6/38 (15%), Positives = 10/38 (26%)
Query: 237 SIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
S + I +GH+ A V +
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE 46
Score = 40.3 bits (95), Expect = 5e-04
Identities = 6/38 (15%), Positives = 10/38 (26%)
Query: 389 SIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
S + I +GH+ A V +
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE 46
Score = 28.0 bits (63), Expect = 6.3
Identities = 6/26 (23%), Positives = 8/26 (30%), Gaps = 2/26 (7%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGH 255
A+ KD + L A E
Sbjct: 219 GVHVAEDVAKDYE--DGLEYAVAESV 242
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 62.5 bits (153), Expect = 2e-11
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
G +L I + +++ LH+A +V+ L+ GAS DR T
Sbjct: 33 QQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA 83
Score = 60.9 bits (149), Expect = 7e-11
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
G +L I + +++ LH+A +V+ L+ GAS DR
Sbjct: 33 QQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR 77
Score = 60.9 bits (149), Expect = 7e-11
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GA+++ + SALH A G +V+ L+ +GA K+ T L
Sbjct: 172 HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL 220
Score = 60.9 bits (149), Expect = 7e-11
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GA+++ + SALH A G +V+ L+ +GA K+
Sbjct: 172 HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 213
Score = 60.2 bits (147), Expect = 2e-10
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 232 QGADLSIKDA-DQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+GAD+ D RS L A +V+ LL +GA+V+ + + L
Sbjct: 138 RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187
Score = 58.6 bits (143), Expect = 4e-10
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 384 QGADLSIKDA-DQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+GAD+ D RS L A +V+ LL +GA+V+ +
Sbjct: 138 RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181
Score = 56.3 bits (137), Expect = 2e-09
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS----VHEKDRVQLTVL 280
GA D ++A H+AC ++ LL + A + ++ LT L
Sbjct: 68 AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Score = 55.2 bits (134), Expect = 7e-09
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS----VHEKDR 426
GA D ++A H+AC ++ LL + A + ++
Sbjct: 68 AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 114
Score = 54.8 bits (133), Expect = 1e-08
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
DL ++ D +ALH+A + V+ LL GA + D
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD 146
Score = 54.8 bits (133), Expect = 1e-08
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
DL ++ D +ALH+A + V+ LL GA + D
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD 146
Score = 54.0 bits (131), Expect = 1e-08
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 268
GAD S+K+ + L +A DI++ AS
Sbjct: 205 SGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 54.0 bits (131), Expect = 1e-08
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS 420
GAD S+K+ + L +A DI++ AS
Sbjct: 205 SGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 50.5 bits (122), Expect = 2e-07
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 239 KDADQRSALHIACCEGHTDIVKYLL----LNGASVHEKDRVQLTVL 280
D D + LHIA +G+ V L+ G + + ++ T L
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL 50
Score = 48.2 bits (116), Expect = 1e-06
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 391 KDADQRSALHIACCEGHTDIVKYLL----LNGASVHEKDR 426
D D + LHIA +G+ V L+ G + +
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN 44
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 61.7 bits (151), Expect = 3e-11
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ AD++ D +SALH A + D LL NGA+ ++ + T L
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL 162
Score = 60.5 bits (148), Expect = 9e-11
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+ AD++ D +SALH A + D LL NGA+ ++
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 156
Score = 60.1 bits (147), Expect = 1e-10
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GA+ +++ + + L +A EG + K LL + A+ D +
Sbjct: 147 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 195
Score = 59.0 bits (144), Expect = 3e-10
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GA+ +++ + + L +A EG + K LL + A+ D
Sbjct: 147 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188
Score = 57.4 bits (140), Expect = 1e-09
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS-VHEKDRVQLTVL 280
AD +I+D R+ LH A + + L+ N A+ + + T L
Sbjct: 47 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 96
Score = 57.0 bits (139), Expect = 1e-09
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 230 LFQGADLS-IKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
++QGA L D +ALH+A +D K LL A + +D + T L
Sbjct: 11 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 62
Score = 56.3 bits (137), Expect = 3e-09
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 382 LFQGADLS-IKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
++QGA L D +ALH+A +D K LL A + +D
Sbjct: 11 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD 55
Score = 55.5 bits (135), Expect = 4e-09
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS-VHEKDR 426
AD +I+D R+ LH A + + L+ N A+ + +
Sbjct: 47 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 90
Score = 55.1 bits (134), Expect = 6e-09
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 230 LFQGA-DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ A DL + D + L +A +++ L+ + A V+ D + + L
Sbjct: 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 129
Score = 54.3 bits (132), Expect = 1e-08
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 382 LFQGA-DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ A DL + D + L +A +++ L+ + A V+ D
Sbjct: 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122
Score = 52.8 bits (128), Expect = 3e-08
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
A+ I D R IA H DIV+ L
Sbjct: 180 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215
Score = 52.8 bits (128), Expect = 3e-08
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 419
A+ I D R IA H DIV+ L
Sbjct: 180 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215
Score = 32.0 bits (74), Expect = 0.25
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 254 GHTDIVKYLLLNGASVH-EKDRVQLTVL 280
++ + GAS+H + DR T L
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETAL 29
Score = 30.5 bits (70), Expect = 0.75
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 406 GHTDIVKYLLLNGASVH-EKDR 426
++ + GAS+H + DR
Sbjct: 2 DAPAVISDFIYQGASLHNQTDR 23
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 60.1 bits (147), Expect = 4e-11
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GAD+ KD LH AC GH ++ + L+ +GA V+ D + T L
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL 112
Score = 60.1 bits (147), Expect = 4e-11
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GA +++ D + + LH A +G +I K LL +GA +K+R T L
Sbjct: 97 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 59.7 bits (146), Expect = 6e-11
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GA +++ D + + LH A +G +I K LL +GA +K+R
Sbjct: 97 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR 139
Score = 59.3 bits (145), Expect = 8e-11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GAD+ KD LH AC GH ++ + L+ +GA V+ D
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105
Score = 58.2 bits (142), Expect = 2e-10
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
Q + + Q + LH A +V+YLL +GA VH KD+ L L
Sbjct: 31 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPL 79
Score = 57.0 bits (139), Expect = 5e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
Q + + Q + LH A +V+YLL +GA VH KD
Sbjct: 31 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 72
Score = 49.3 bits (119), Expect = 2e-07
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLL-LNGASVHEKDRVQLTVL 280
GA +++ L A G + VK L + + + + Q T L
Sbjct: 1 GAM---GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL 46
Score = 47.8 bits (115), Expect = 9e-07
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 267
GAD + K+ D + L + +G TDI L + A
Sbjct: 130 HGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Score = 47.8 bits (115), Expect = 9e-07
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGA 419
GAD + K+ D + L + +G TDI L + A
Sbjct: 130 HGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Score = 47.0 bits (113), Expect = 1e-06
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLL-LNGASVHEKD 425
GA +++ L A G + VK L + + + +
Sbjct: 1 GAM---GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE 39
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 61.3 bits (150), Expect = 7e-11
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
AD++ D +SALH A + D LL NGA+ ++ + T L
Sbjct: 146 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL 194
Score = 60.9 bits (149), Expect = 9e-11
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
AD++ D +SALH A + D LL NGA+ ++
Sbjct: 146 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Score = 60.6 bits (148), Expect = 1e-10
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
GA+ +++ + + L +A EG + K LL + A+ D +
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 227
Score = 59.4 bits (145), Expect = 3e-10
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GA+ +++ + + L +A EG + K LL + A+ D
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
Score = 57.9 bits (141), Expect = 1e-09
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 232 QGADLS-IKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
QGA L D +ALH+A +D K LL A + +D + T L
Sbjct: 45 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 94
Score = 57.1 bits (139), Expect = 2e-09
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS-VHEKDRVQLTVL 280
AD +I+D R+ LH A + + L+ N A+ + + T L
Sbjct: 79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Score = 56.7 bits (138), Expect = 3e-09
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 384 QGADLS-IKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
QGA L D +ALH+A +D K LL A + +D
Sbjct: 45 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD 87
Score = 56.3 bits (137), Expect = 3e-09
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 230 LFQGA-DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+ A DL + D + L +A +++ L+ + A V+ D + + L
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Score = 55.9 bits (136), Expect = 4e-09
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEK 272
A+ I D R IA H DIV+ L L H
Sbjct: 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
Score = 55.9 bits (136), Expect = 4e-09
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEK 424
A+ I D R IA H DIV+ L L H
Sbjct: 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
Score = 55.9 bits (136), Expect = 4e-09
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGAS-VHEKDR 426
AD +I+D R+ LH A + + L+ N A+ + +
Sbjct: 79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122
Score = 55.6 bits (135), Expect = 6e-09
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 382 LFQGA-DLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
+ A DL + D + L +A +++ L+ + A V+ D
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Score = 44.0 bits (105), Expect = 4e-05
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 14/60 (23%)
Query: 235 DLSIKDADQRSALHIACCEG-------------HTDIVKYLLLNGASVH-EKDRVQLTVL 280
D++++ D + L IA C G ++ + GAS+H + DR T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Score = 42.1 bits (100), Expect = 2e-04
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 14/54 (25%)
Query: 387 DLSIKDADQRSALHIACCEG-------------HTDIVKYLLLNGASVH-EKDR 426
D++++ D + L IA C G ++ + GAS+H + DR
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 60.1 bits (147), Expect = 8e-11
Identities = 13/51 (25%), Positives = 32/51 (62%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L +G++++ KD ++ L + G++++ +LL +GA+V++++ T L
Sbjct: 88 LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPL 138
Score = 59.7 bits (146), Expect = 1e-10
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
L KD + +AL A I + LL G++V+ KD T L
Sbjct: 57 NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105
Score = 59.3 bits (145), Expect = 1e-10
Identities = 11/44 (25%), Positives = 30/44 (68%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L +G++++ KD ++ L + G++++ +LL +GA+V++++
Sbjct: 88 LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRN 131
Score = 58.9 bits (144), Expect = 2e-10
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
L KD + +AL A I + LL G++V+ KD
Sbjct: 57 NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD 98
Score = 57.8 bits (141), Expect = 4e-10
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 273
GA+++ ++ + + L +A G ++IVK LL GA + +D
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD 164
Score = 57.8 bits (141), Expect = 4e-10
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
GA+++ ++ + + L +A G ++IVK LL GA + +D
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD 164
Score = 56.6 bits (138), Expect = 1e-09
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 232 QGADLSI--KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
Q D +D+ R+ L +AC G + + L+ N + +KD T L
Sbjct: 22 QNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTAL 72
Score = 55.5 bits (135), Expect = 3e-09
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 384 QGADLSI--KDADQRSALHIACCEGHTDIVKYLLLNGASVHEKD 425
Q D +D+ R+ L +AC G + + L+ N + +KD
Sbjct: 22 QNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD 65
Score = 44.3 bits (106), Expect = 2e-05
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 232 QGADLSIKDADQRSALHIACCEGHTDIVKYLL 263
GAD+S +D +A A G +++K
Sbjct: 156 LGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 44.3 bits (106), Expect = 2e-05
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 384 QGADLSIKDADQRSALHIACCEGHTDIVKYLL 415
GAD+S +D +A A G +++K
Sbjct: 156 LGADISARDLTGLTAEASARIFGRQEVIKIFT 187
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 56.2 bits (135), Expect = 5e-09
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 8/118 (6%)
Query: 172 RSVLFPAMLQSAVMTGDLKRM-------EEIKGYVKRPQGALPFALNSSLPQEITQKLDI 224
R P L +A+ DL + ++ + P P L L ++ + +
Sbjct: 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 206
Query: 225 DGVPSLFQ-GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLT 281
V + Q G L K AD +ALH A D +K LL A V + T L
Sbjct: 207 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 264
Score = 52.7 bits (126), Expect = 7e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
G L K AD +ALH A D +K LL A V +
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 257
Score = 36.5 bits (84), Expect = 0.014
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLL 264
A + + +AL IA + H + + L
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 36.5 bits (84), Expect = 0.014
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLL 416
A + + +AL IA + H + + L
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELLEQ 280
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 53.1 bits (127), Expect = 5e-08
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVL 280
+L + +ALH C + + +K LL AS+ + T L
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 242
Score = 50.8 bits (121), Expect = 3e-07
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
+L + +ALH C + + +K LL AS+ +
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE 236
Score = 35.7 bits (82), Expect = 0.020
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 201 RPQGALPFALNSSLPQEITQKLDIDGVPSLFQGADLSIK------DADQRSALHIACCEG 254
R + A A SL + + + + + G DL+ K +ALH+A
Sbjct: 121 RKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSV 180
Query: 255 ---HTDIVKYLLLNGASVHEKDRVQLTVL 280
IV +L+ N ++ ++ T L
Sbjct: 181 DRTSLHIVDFLVQNSGNLDKQTGKGSTAL 209
Score = 35.4 bits (81), Expect = 0.023
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLL 264
A + I + + L IA H + L
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 35.4 bits (81), Expect = 0.023
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLL 416
A + I + + L IA H + L
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 33.0 bits (75), Expect = 0.16
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 337 KRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDIDGVPSLFQGADLSIK----- 391
R + I Y + + +L + + + + + G DL+ K
Sbjct: 105 ARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLAN 164
Query: 392 -DADQRSALHIACCEG---HTDIVKYLLLNGASVHEKD 425
+ALH+A IV +L+ N ++ ++
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT 202
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 6e-08
Identities = 81/565 (14%), Positives = 148/565 (26%), Gaps = 181/565 (32%)
Query: 9 YGSGNFPSNRAD-LLELLKSANERGV------------------IIVNCSQCSRGTTSNI 49
S + + L L S E V I Q S T I
Sbjct: 55 IMSKD-AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 50 YETGKSLTDVGVITGYDMTPESALTKLSYVLSKSDWTLEKK------------KTSLT-- 95
+ + D V Y+++ KL L + L KT +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE----LRPAKNVLIDGVLGSGKTWVALD 169
Query: 96 -----------DVGV--IT-GYDMTPESALTKLSYVLSKSDWTLEKKKTIMLTNIRGELT 141
D + + +PE+ L L +L + D + +NI+ +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS-SNIKLRIH 228
Query: 142 SEKS------TEGGYD---LV------GAVVRLLN-----LTTEKDKDDLRSVLFPAMLQ 181
S ++ Y+ LV N L T + K +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL------- 281
Query: 182 SAVMTGDLKRMEEIKGYVKRPQGALPFA--LN---SSLPQEITQKLDIDGVP---SLFQG 233
SA T + +L L+ LP+E+ P S+
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLT-----TNPRRLSII-A 334
Query: 234 ADLSIKDADQRSA--LHIACCEGHTDIVK--------------YLLLNGASVHEKDRVQL 277
SI+D H+ C + T I++ + L SV +
Sbjct: 335 E--SIRDGLATWDNWKHVNC-DKLTTIIESSLNVLEPAEYRKMFDRL---SVFPPS-AHI 387
Query: 278 T--VLTNIRGELTSEKSTEGGYDLVGAVVRLLNLTTEKDKDDLRSVLFPAMLQSAVMTGD 335
+L+ I ++ + L EK + + L+ V +
Sbjct: 388 PTILLSLIWFDVIKSDVMV---VVNKLHKYSL---VEKQPKESTISIPSIYLELKVKLEN 441
Query: 336 LKRMEE--IKGYVSNIVYE---FSMNP-----------HLTTL-----ISNLPQE----- 369
+ + Y ++ HL + ++
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 370 -ITQKLDIDGVPSLFQGA------DLS-----IKDAD--------------QRSALHIAC 403
+ QK+ D G+ L I D D + ++ C
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 404 CEGHTDIVKYLLL--NGASVHEKDR 426
+ +TD+++ L+ + A E +
Sbjct: 562 SK-YTDLLRIALMAEDEAIFEEAHK 585
Score = 31.0 bits (69), Expect = 0.87
Identities = 43/209 (20%), Positives = 67/209 (32%), Gaps = 61/209 (29%)
Query: 106 TPESALTKL-SYVLSKSDWTLEKKKTIMLTNIRGELTSEKSTEGGYDLVGAVVRLLNLTT 164
+ KL Y L + K+ TI + +I EL + E Y L ++V N+
Sbjct: 403 DVMVVVNKLHKYSLVEKQP---KESTISIPSIYLELKVKLENE--YALHRSIVDHYNIPK 457
Query: 165 EKDKDDL------------------------RSVLFPAMLQSAVMTGDLKRMEEIKGYVK 200
D DDL R LF + D + +E+ K
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL------DFRFLEQ-----K 506
Query: 201 -RPQGALPFALNSSLP---------QEITQKLDIDGVPSLFQGADLSIKDADQRSALHIA 250
R A S L I D D A I D + ++
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYIC---DNDPKYERLVNA---ILDFLPKIEENLI 560
Query: 251 CCEGHTDIVKYLLL--NGASVHEKDR-VQ 276
C + +TD+++ L+ + A E + VQ
Sbjct: 561 CSK-YTDLLRIALMAEDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 9e-07
Identities = 45/283 (15%), Positives = 90/283 (31%), Gaps = 81/283 (28%)
Query: 7 QTYGSG-----NFPS-----NRAD----------LLELLKSANERGVIIVNCSQCSRGTT 46
Q G G + NRAD +L+++ + N + I + +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN-NPVNLTIHFGGEKGKRIR 1685
Query: 47 SN----IYETG--------KSLTDVG-VITGYDMT-PESALTKLSY------VLSKSDWT 86
N I+ET K ++ T Y + L+ + ++ K+ +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 87 LEKKKTSLTDVGVITG-----YDMTPESALTKLSYVLSKSDWTLEKKKTIMLTNIRGELT 141
K K + G Y +AL L+ V+S + + RG
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEY-----AALASLADVMSIES-------LVEVVFYRGMTM 1793
Query: 142 SE--KSTEGGYDLVGAV-VRLLNLTTEKDKDDLRSVLFPA------MLQSA--------- 183
E G G + + + ++ L+ V+ +++
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853
Query: 184 VMTGDLKRMEEIKG---YVKRPQGALPFALNSSLP-QEITQKL 222
V GDL+ ++ + ++K + + L SL +E+ L
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKIDI-IELQKSLSLEEVEGHL 1895
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 46.3 bits (109), Expect = 1e-05
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQLTVLT 281
GA+++ D+ R LH A GHT + L GA + +D LT
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLT 306
Score = 44.4 bits (104), Expect = 4e-05
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
GA+++ D+ R LH A GHT + L GA + +D
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299
Score = 35.5 bits (81), Expect = 0.026
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDRVQ 276
L +GADL +D++ R L IA + DIV L L E + Q
Sbjct: 288 LKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQ 334
Score = 35.5 bits (81), Expect = 0.030
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
L +GADL +D++ R L IA + DIV L L E +
Sbjct: 288 LKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ 332
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 44.9 bits (106), Expect = 3e-05
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 233 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 274
G L K AD +ALH A D +K LL A V +
Sbjct: 197 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 238
Score = 44.9 bits (106), Expect = 3e-05
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 385 GADLSIKDADQRSALHIACCEGHTDIVKYLLLNGASVHEKDR 426
G L K AD +ALH A D +K LL A V +
Sbjct: 197 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 238
Score = 32.6 bits (74), Expect = 0.23
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 375 DIDGVPSLF-QGADLSIK------DADQRSALHIACCEGHTD---IVKYLLLNGASVHEK 424
D+ V F G D A + LH+A + +V +++ NG + K
Sbjct: 144 DLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK 203
Query: 425 D 425
Sbjct: 204 A 204
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.003
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 11/36 (30%)
Query: 181 QSAVMTGDLKRME-EIKGYVKRPQGALP-FALNSSL 214
Q+ LK+++ +K Y A P A+ +++
Sbjct: 20 QA------LKKLQASLKLYA--DDSA-PALAIKATM 46
Score = 29.5 bits (65), Expect = 1.3
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 21/45 (46%)
Query: 196 KGYVKRPQGAL-PFALNSSLPQEITQKLDIDGVPSLFQGADLSIK 239
K +K+ Q +L +A D P+ L+IK
Sbjct: 19 KQALKKLQASLKLYA-----D---------DSAPA------LAIK 43
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 34.0 bits (77), Expect = 0.10
Identities = 1/26 (3%), Positives = 8/26 (30%)
Query: 230 LFQGADLSIKDADQRSALHIACCEGH 255
+++ + + ++ G
Sbjct: 501 VWKKVSPESNEDISTTVVYRMESLGE 526
Score = 34.0 bits (77), Expect = 0.10
Identities = 1/26 (3%), Positives = 8/26 (30%)
Query: 382 LFQGADLSIKDADQRSALHIACCEGH 407
+++ + + ++ G
Sbjct: 501 VWKKVSPESNEDISTTVVYRMESLGE 526
>1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A
{Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A*
Length = 371
Score = 30.1 bits (67), Expect = 1.2
Identities = 10/48 (20%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 330 AVMTGDLKRMEEIKGYVSNIVYEFSMNPHLTTLISNLPQEITQKLDID 377
+++GD KR EI GY ++ ++ + ++ + + + ++I + +D
Sbjct: 62 VIVSGD-KRSPEILGYSTSGSFDVNGKENIASFMESYVEQIKENKKLD 108
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.6 bits (66), Expect = 1.3
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 26 KSANERGVIIVNCSQCSRGTTSNI---YETGKSL-TDVGVITG---YDMTPE 70
+ N V+ C +C + I + G + G++ D E
Sbjct: 14 RGPNLNIVLT--CPEC-KVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSE 62
>3ov9_A Nucleoprotein; orthogonal bundle, viral genomic encapsidation,
viral protein; 1.60A {Rift valley fever virus} PDB:
3ouo_A 3lyf_A
Length = 245
Score = 29.0 bits (64), Expect = 2.4
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 17/132 (12%)
Query: 257 DIVKYLLLNGASVHEKDRVQLTVLTNIRG---ELTSEKSTEGGYDLVGAVVRLLNLTTEK 313
+++ L G + EKD ++ VL RG K ++ G V A++ L K
Sbjct: 37 RVIELLKQYGGADWEKDAKKMIVLALTRGNKPRRMMMKMSKEGKATVEALINKYKL---K 93
Query: 314 DKDDLRSVLFPAMLQSAVMTGDLKRMEEIKGY----------VSNIVYEFSMNPHLTTLI 363
+ + R L + + +A+ + + + + +S M+P ++
Sbjct: 94 EGNPSRDELTLSRVAAALAGWTCQALVVLSEWLPVTGTTMDGLSPAYPRHMMHPSFAGMV 153
Query: 364 SN-LPQEITQKL 374
LP + + +
Sbjct: 154 DPSLPGDYLRAI 165
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania mexicana}
PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A*
3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Length = 499
Score = 29.1 bits (66), Expect = 3.3
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 268 SVHEKDRVQLTVLTNIRGELTSEKSTEGGYDLVGAVVRLLNLTTEKDKDDLR 319
S ++ ++ TV + ++ + G +L G V L ++ KD+ DL+
Sbjct: 155 SHEDEQTLECTVTNS--HTISDRR----GVNLPGCDVDLPAVS-AKDRVDLQ 199
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix;
1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A
3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Length = 146
Score = 27.7 bits (62), Expect = 4.3
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 179 MLQSAVMTGDLKRMEEIKGYVKR 201
+ + +T + ++EE G V R
Sbjct: 61 FVTQSAITASVDKLEE-MGLVVR 82
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus
solfataricus}
Length = 134
Score = 27.2 bits (60), Expect = 5.7
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 19 ADLLELLKSANERGVIIVNCSQC 41
+ A E GV + C Q
Sbjct: 75 NPFIHFFDMAXENGVXMYVCVQS 97
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural
genomic protein structure initiative; 2.10A {Pseudomonas
aeruginosa} SCOP: a.4.5.28
Length = 142
Score = 27.3 bits (61), Expect = 6.0
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 178 AMLQSAVMTGDLKRMEEIKGYVKR 201
A + MTG L R+E G V+R
Sbjct: 60 ACILRPSMTGVLARLER-DGIVRR 82
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1,
putative MARR-like transcription regulator, MAR
structural genomics; 2.38A {Bacillus cereus}
Length = 139
Score = 27.3 bits (61), Expect = 6.1
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 179 MLQSAVMTGDLKRMEEIKGYVKR 201
+ MT ++RM+ GYV
Sbjct: 58 GCVPSNMTTMIQRMKR-DGYVMT 79
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 28.3 bits (63), Expect = 6.8
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Query: 4 VILQTYGSGNFPSNRADLLELLKSANE-RGVIIVNCSQCSRGTTSNIYETGKSLTDVGVI 62
V+ T+G+G+ P N L V S R + + Y + + G
Sbjct: 63 VVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPD 122
Query: 63 TGYDMTPESALTKLSY 78
+ L + +
Sbjct: 123 LRDNFESTGPLANVRF 138
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance
repressor, structura genomics, joint center for
structural genomics, JCSG; 2.20A {Streptococcus suis}
Length = 142
Score = 27.0 bits (60), Expect = 7.7
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 179 MLQSAVMTGDLKRMEEIKGYVKR 201
+ A +T LK +EE GY+ R
Sbjct: 56 QIDRAAVTRHLKLLEE-SGYIIR 77
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET:
FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1
c.1.12.1 c.49.1.1 PDB: 1a3x_A
Length = 500
Score = 27.6 bits (62), Expect = 7.9
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 268 SVHEKDRVQLTVLTNIRGELTSEKSTEGGYDLVGAVVRLLNLTTEKDKDDLR 319
V + +++ L G++ S K G +L G V L L+ EKDK+DLR
Sbjct: 156 EVVDDKTLKVKALNA--GKICSHK----GVNLPGTDVDLPALS-EKDKEDLR 200
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 27.6 bits (62), Expect = 8.7
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 21/73 (28%)
Query: 102 GYDMTPESALTKLSYVLSKSDWTLEKKKTIMLTNIRG----ELTSEKSTEGGYDLVGAVV 157
YD T + A K Y+ + G E +S+K+ G LVG VV
Sbjct: 318 SYD-TVKIAGKKAEYITKN--------------GMGGGMWWESSSDKT--GNESLVGTVV 360
Query: 158 RLLNLTTEKDKDD 170
L T + ++ +
Sbjct: 361 NGLGGTGKLEQRE 373
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for
structural genomics, PSI, protein structure initiative,
MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Length = 145
Score = 26.5 bits (59), Expect = 9.6
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 179 MLQSAVMTGDLKRMEEIKGYVKR 201
+ + +TG +KR+E GY+ R
Sbjct: 58 GVAKSTVTGLVKRLEA-DGYLTR 79
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.368
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,094,384
Number of extensions: 360248
Number of successful extensions: 1588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1466
Number of HSP's successfully gapped: 685
Length of query: 426
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 330
Effective length of database: 4,021,377
Effective search space: 1327054410
Effective search space used: 1327054410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.4 bits)