BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15714
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 102/188 (54%), Positives = 134/188 (71%), Gaps = 5/188 (2%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 197 VKKQDKSC 204
VKK+ + C
Sbjct: 182 VKKRKRKC 189
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 99/177 (55%), Positives = 130/177 (73%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +K
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 99/184 (53%), Positives = 132/184 (71%)
Query: 14 DVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDV 73
+V + +A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++
Sbjct: 13 EVLFQGTMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 72
Query: 74 TLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILV 133
LWDTAGQEDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILV
Sbjct: 73 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 132
Query: 134 GTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAV 193
GTK DLR + TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+
Sbjct: 133 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 192
Query: 194 RSAV 197
R+ +
Sbjct: 193 RAVL 196
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 220 bits (560), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 129/176 (73%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 219 bits (559), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 129/176 (73%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 219 bits (559), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 129/176 (73%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 219 bits (558), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 129/176 (73%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 219 bits (558), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 128/174 (73%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 175
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 219 bits (557), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 98/188 (52%), Positives = 136/188 (72%), Gaps = 5/188 (2%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD+K ++ LWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +SYEN+ +KW+PE++HHCP PIILVGTK DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV---- 197
+ TI+K K ++ ++ QG + ++I + +YLECSA GL VF A+R+ +
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQP 181
Query: 198 -KKQDKSC 204
++Q ++C
Sbjct: 182 TRQQKRAC 189
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 219 bits (557), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/188 (53%), Positives = 133/188 (70%), Gaps = 5/188 (2%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 197 VKKQDKSC 204
VKK+ + C
Sbjct: 182 VKKRKRKC 189
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 218 bits (556), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/188 (53%), Positives = 133/188 (70%), Gaps = 5/188 (2%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 197 VKKQDKSC 204
VKK+ + C
Sbjct: 182 VKKRKRKC 189
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 218 bits (556), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 98/179 (54%), Positives = 129/179 (72%)
Query: 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT 78
S +A+K VGDG VGK CLLI++T N FP +Y+PTVFDNY + VD K ++ LWDT
Sbjct: 6 SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 65
Query: 79 AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138
AGQEDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK D
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 125
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
LR + TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 126 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 218 bits (554), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 101/188 (53%), Positives = 133/188 (70%), Gaps = 5/188 (2%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD L+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 197 VKKQDKSC 204
VKK+ + C
Sbjct: 182 VKKRKRKC 189
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 218 bits (554), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 128/176 (72%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N P +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 217 bits (552), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 129/176 (73%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PI+LVGTK DLR
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 122
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI++ + ++ ++ QG M R+I + +YLECSA GL VF A+R+ +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 217 bits (552), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 128/176 (72%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAG
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 217 bits (552), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 129/176 (73%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PI+LVGTK DLR
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 122
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI++ + ++ ++ QG M R+I + +YLECSA GL VF A+R+ +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 216 bits (551), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 129/176 (73%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PI+LVGTK DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI++ + ++ ++ QG M R+I + +YLECSA GL VF A+R+ +
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 216 bits (551), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 128/176 (72%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAG
Sbjct: 5 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 216 bits (550), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 128/176 (72%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N F +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 12 QAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 72 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 131
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 216 bits (550), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 97/178 (54%), Positives = 129/178 (72%)
Query: 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTA 79
+ +A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTA
Sbjct: 4 LMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 63
Query: 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL 139
GQEDY+RLRP+SYP TD L+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DL
Sbjct: 64 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 123
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
R + TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 124 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 181
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 128/176 (72%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD L+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 128/176 (72%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD L+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 213 bits (543), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 129/176 (73%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGD VGKTCLLI++T N FP +Y+PTVFDNY + VD+K ++ LWDTAGQ
Sbjct: 9 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +SYEN+ +KW+PE++HHCP PIILVGTK DLR
Sbjct: 69 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 128
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K K ++ ++ QG + ++I + +YLECSA GL VF A+R+ +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 213 bits (543), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 129/176 (73%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGD VGKTCLLI++T N FP +Y+PTVFDNY + VD+K ++ LWDTAGQ
Sbjct: 8 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +SYEN+ +KW+PE++HHCP PIILVGTK DLR
Sbjct: 68 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 127
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K K ++ ++ QG + ++I + +YLECSA GL VF A+R+ +
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 94/180 (52%), Positives = 128/180 (71%)
Query: 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWD 77
++ + +K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209
Query: 78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137
TAG EDY+RLRP+SYP TD FL+CFS+ S +S+ ++ +KWYPE++HHCP PIILVGTK
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
DLR + TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 94/180 (52%), Positives = 128/180 (71%)
Query: 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWD 77
++ + +K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209
Query: 78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137
TAG EDY+RLRP+SYP TD FL+CFS+ S +S+ ++ +KWYPE++HHCP PIILVGTK
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
DLR + TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 211 bits (536), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 94/180 (52%), Positives = 128/180 (71%)
Query: 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWD 77
++ + +K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209
Query: 78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137
TAG EDY+RLRP+SYP TD FL+CFS+ S +S+ ++ +KWYPE++HHCP PIILVGTK
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
DLR + TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/195 (50%), Positives = 129/195 (66%), Gaps = 19/195 (9%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 82 EDYERLRPMSYPNT-------------------DCFLLCFSIGSTSSYENILSKWYPELK 122
EDY+RLRP+SYP T D FL+CFS+ S +S+EN+ +KWYPE++
Sbjct: 64 EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 123 HHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182
HHCP PIILVGTK DLR + TI+K K ++ ++ QG M ++I A +YLECSA
Sbjct: 124 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 183 EGLDQVFIAAVRSAV 197
GL VF A+R+ +
Sbjct: 184 RGLKTVFDEAIRAVL 198
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 206 bits (525), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 93/183 (50%), Positives = 129/183 (70%)
Query: 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT 78
S + +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DT
Sbjct: 6 SAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 79 AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138
AGQEDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ D
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 125
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
LR + TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++
Sbjct: 126 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 185
Query: 199 KQD 201
+
Sbjct: 186 PPE 188
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 206 bits (524), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 97/181 (53%), Positives = 128/181 (70%), Gaps = 4/181 (2%)
Query: 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT 78
S + +K TVGDG VGKTC+LI++T N FPTDYVPTVFDN+ + VD T ++ LWDT
Sbjct: 2 STARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
Query: 79 AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138
AGQEDY RLRP+SY D FLL FS+ S +SYENI KW PELKH+ P +PI+LVGTK D
Sbjct: 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLD 121
Query: 139 LRSENKTI-DKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
LR + + + D AA ++T+QG+++R+ I A YLECS+K + + VF A+R A+
Sbjct: 122 LRDDKQFLKDHPGAAS---ITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVAL 178
Query: 198 K 198
+
Sbjct: 179 R 179
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 205 bits (522), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 12 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 71
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 72 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 131
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++ +
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 191
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 3 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 62
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 63 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 122
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++ +
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 182
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 127/177 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 4 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 64 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 127/177 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 65
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 182
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 5 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 65 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++ +
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 184
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 127/177 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 127/177 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 5 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 65 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++ +
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 184
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 4 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 64 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++ +
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 183
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 126/177 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
+ TI+K + ++ +K+ R +KA +Y+ECSA GL VF A+ +A++
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE 178
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 125/176 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K + ++ +K+ R +KA +Y+ECSA GL VF A+ +A+
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 204 bits (518), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 127/180 (70%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGK CLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 9 QTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 68
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 69 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 128
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++ +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 188
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 203 bits (516), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 126/177 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 203 bits (516), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 126/177 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVP VFDNY T+ + + Y + L+DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 202 bits (514), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 126/177 (71%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NK P++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 127/180 (70%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAG
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 65
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++ +
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 185
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 127/180 (70%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 128/180 (71%), Gaps = 4/180 (2%)
Query: 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT 78
SV K +K TVGDG VGKTC+LI +T NKFPTDY+PTVFDN+ + VD + ++ LWDT
Sbjct: 5 SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDT 64
Query: 79 AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138
AGQEDY RLRP+SY D F+L FS+ S +SYEN+L KW PEL+ P VPI+LVGTK D
Sbjct: 65 AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLD 124
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
LR + + A ++++++QG+++R++I AA Y+ECS+K + + VF A++ ++
Sbjct: 125 LRDDKGYL----ADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 127/180 (70%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGD VGKTCLLI++T NKFP++YVPTVFDNY T+ + + Y + L+DTAGQ
Sbjct: 2 QTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S SS+EN+ KW PE+ HHCPK P +LVGT+ DLR
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K + ++ +K+ R +KA +Y+ECSA +GL VF A+ +A++ +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/183 (52%), Positives = 127/183 (69%), Gaps = 4/183 (2%)
Query: 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLW 76
S S + +K TVGDG VGKTCLLI++T N FPTDYVPTVFDN+ + V+ T ++ LW
Sbjct: 2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLW 61
Query: 77 DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
DTAGQEDY RLRP+SY D F+L FS+ S +SYEN+ KW PELKH+ P VPI+LVGTK
Sbjct: 62 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTK 121
Query: 137 ADLRSENK-TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
DLR + + ID A ++T QG+++++ I A Y+ECS+K E + VF AA+R
Sbjct: 122 LDLRDDKQFFIDHPGAVP---ITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRV 178
Query: 196 AVK 198
++
Sbjct: 179 VLQ 181
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 199 bits (507), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 94/176 (53%), Positives = 122/176 (69%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFS+ S S ENI KW PE+KH CP VPIILV K DLRS+
Sbjct: 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+ + + V T G+ M +I+A +YLECSAK EG+ +VF A R+A++K+
Sbjct: 147 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR 202
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 120/174 (68%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI +++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR +
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
T + + + V + +G+ M +I A YLECSAK EG+ +VF A R+ ++
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 197 bits (501), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 119/174 (68%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR +
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
T + + + V + +G+ M +I A YLECSAK EG+ +VF A R+ ++
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 197 bits (501), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 92/181 (50%), Positives = 127/181 (70%), Gaps = 4/181 (2%)
Query: 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT 78
S + +K TVGDG VGKTC+LI++T N FPTDYVPTVFDN+ + VD T ++ LWDT
Sbjct: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDT 61
Query: 79 AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138
AGQEDY RLRP+SY D F+L FS+ S +SYEN+ KW PEL+H+ P VPIILVGTK D
Sbjct: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
Query: 139 LRSENK-TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
LR + + ID A ++T+QG+++++ I + Y+ECS+K + + VF AA++ +
Sbjct: 122 LRDDKQFFIDHPGAVP---ITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178
Query: 198 K 198
+
Sbjct: 179 Q 179
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 196 bits (499), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 122/176 (69%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI +++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A++ +
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR 182
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 196 bits (499), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 122/176 (69%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI +++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A++ +
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR 182
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 196 bits (498), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 121/176 (68%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A++ +
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR 184
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 196 bits (498), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 121/174 (69%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI +++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A++
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 196 bits (498), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 121/176 (68%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A++ +
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR 182
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 196 bits (498), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 121/174 (69%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI +++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A++
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 196 bits (497), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 121/176 (68%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A++ +
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR 185
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 120/174 (68%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A++
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 121/176 (68%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A++ +
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR 184
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 120/174 (68%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 71 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 130
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A++
Sbjct: 131 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 195 bits (496), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 120/174 (68%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A++
Sbjct: 128 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 195 bits (496), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 120/173 (69%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI +++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A+
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 194 bits (492), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 118/174 (67%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH P VPIILVG K DLR +
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
T + + + V + +G+ M +I A YLECSAK EG+ +VF A R+ ++
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 193 bits (490), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 120/174 (68%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI +++++FP YVPTVF+NY I VD K ++ LWDTAG EDY
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A++
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 119/174 (68%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGD GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
T + + + V +G+ M +I A Y+ECSAK +G+ +VF A R+A++
Sbjct: 128 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 119/174 (68%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGD GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQEDY
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+R RP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR++
Sbjct: 67 DRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
T + + + V ++G+ M +I A Y+ECSAK +G+ +VF A R+A++
Sbjct: 127 TARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 183 bits (465), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 119/170 (70%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
LK VGDG VGKTCLL+++ + FP +YVPTVFD+Y ++TV K Y + L+DTAGQED
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
Y+RLRP+SYP TD FL+CFS+ + +S++N+ +W PELK + P VP +L+GT+ DLR +
Sbjct: 79 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 138
Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAV 193
KT+ + + + QG+K+ ++I A Y+ECSA +GL VF A+
Sbjct: 139 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 118/173 (68%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG GKTCLLI +++ +FP YVPTVF+NY + VD + ++ LWDTAGQEDY
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+RLRP+SYP+++ L+CFSI S EN+ KW E+ H C VPIILVG K DLR++ +
Sbjct: 72 DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
TI++ + V++ +G+ + +I A Y ECSAK G+ +VF AA R+++
Sbjct: 132 TIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 179 bits (455), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 121/178 (67%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
+K VGDG VGKT L++++T N +PT+Y+PT FDN+ ++VD + + L DTAGQ++
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
+++LRP+ Y NTD FLLCFS+ S SS++N+ KW PE++ HCPK PIILVGT++DLR +
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
K + + + V K + +IKAA Y+ECSA + L +VF AA+ + ++ D
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 117/182 (64%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+++KV VGDG GKT LL+ + FP Y PTVF+ Y + V K + +WDTAGQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
+DY+RLRP+ YP+ LLCF + S +S++NI ++WYPE+ H C KVPII+VG K DLR
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ ++K + ++ V+ +G++M R + A YLECSA+L++ + VF A A+ +
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRG 212
Query: 202 KS 203
++
Sbjct: 213 RN 214
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 156 bits (394), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 115/189 (60%), Gaps = 13/189 (6%)
Query: 1 MLSGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY 60
ML+ + G K K KALK+ VGDG VGKTCLL+ ++ + PT YVPTVF+N+
Sbjct: 4 MLAFSDMNTGAGKIENGK---KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF 60
Query: 61 PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE 120
+ N+ + + LWDTAGQE+Y+RLRP+SY ++D LLCF++ + +S++NI +KW PE
Sbjct: 61 SHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPE 120
Query: 121 LKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180
+KH+ +LVG K DLR + D V+ +G + +K+ Y+E S+
Sbjct: 121 IKHYIDTAKTVLVGLKVDLRKDGS----------DDVTKQEGDDLCQKLGCVAYIEASSV 170
Query: 181 LNEGLDQVF 189
GL++VF
Sbjct: 171 AKIGLNEVF 179
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 156 bits (394), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 10/168 (5%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
KALK+ VGDG VGKTCLL+ ++ + PT YVPTVF+N+ + N+ + + LWDTAGQ
Sbjct: 21 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
E+Y+RLRP+SY ++D LLCF++ + +S++NI +KW PE+KH+ +LVG K DLR
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 140
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
+ D V+ +G + +K+ Y+E S+ GL++VF
Sbjct: 141 DGS----------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 106/176 (60%), Gaps = 1/176 (0%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGD GKT LL ++ FP +YVPTVF+NY + +D + +++LWDT+G Y
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 84
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+ +RP+SYP++D L+CF I + +++L KW E++ CP ++LVG K+DLR++
Sbjct: 85 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 144
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG-LDQVFIAAVRSAVKK 199
T+ + VS QG M ++I AA Y+ECSA +E + +F A + V K
Sbjct: 145 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 200
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 112/191 (58%), Gaps = 8/191 (4%)
Query: 10 GGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNK 69
G +++VK K + VGD GKT LL ++ FP +YVPTVF+NY + +D +
Sbjct: 1 GSNQNVKCK-------IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQ 53
Query: 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP 129
+++LWDT+G Y+ +RP+SYP++D L+CF I + +++L KW E++ CP
Sbjct: 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK 113
Query: 130 IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG-LDQV 188
++LVG K+DLR++ T+ + VS QG M ++I AA Y+ECSA +E + +
Sbjct: 114 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 173
Query: 189 FIAAVRSAVKK 199
F A + V K
Sbjct: 174 FHVATLACVNK 184
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 106/176 (60%), Gaps = 1/176 (0%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGD GKT LL ++ FP +YVPTVF+NY + +D + +++LWDT+G Y
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+ +RP+SYP++D L+CF I + +++L KW E++ CP ++LVG K+DLR++
Sbjct: 90 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 149
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG-LDQVFIAAVRSAVKK 199
T+ + VS QG M ++I AA Y+ECSA +E + +F A + V K
Sbjct: 150 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 205
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 92/159 (57%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGD GKT +L ++ +P YVPTVF+NY + + + +++LWDT+G Y
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+ +RP+ Y ++D LLCF I + ++ L KW E+ +CP ++L+G K DLR++
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183
T+ + + +S QG + +++ A YLE SA +E
Sbjct: 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSE 187
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 92/159 (57%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGD GKT +L ++ +P YVPTVF+NY + + + +++LWDT+G Y
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+ +RP+ Y ++D LLCF I + ++ L KW E+ +CP ++L+G K DLR++
Sbjct: 72 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183
T+ + + +S QG + +++ A YLE SA +E
Sbjct: 132 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSE 170
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 92/159 (57%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGD GKT +L ++ +P YVPTVF+NY + + + +++LWDT+G Y
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
+ +RP+ Y ++D LLCF I + ++ L KW E+ +CP ++L+G K DLR++
Sbjct: 73 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183
T+ + + +S QG + +++ A YLE SA +E
Sbjct: 133 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSE 171
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 17/180 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VG VGK+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
+R + FL F+I +T S+E+I + ++K VP++LVG K+DL S
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDLPS- 123
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
+T+D K+A + ++ S G ++E SAK +G+D F VR K ++K
Sbjct: 124 -RTVDTKQAQD---LARSYG---------IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 17/179 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VG VGK+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
+R + FL F+I +T S+E+I + ++K VP++LVG K DL S
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPS- 123
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+T+D K+A + ++ S G ++E SAK +G+D F VR K ++
Sbjct: 124 -RTVDTKQAQD---LARSYG---------IPFIETSAKTRQGVDDAFYTLVREIRKHKE 169
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I ++ F TDY PT+ D+Y +D++ + + DTAGQE++ +R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRSENKTIDKKKAAEV 154
+ FLL FS+ S+E I L+ + P+IL+G KADL + +
Sbjct: 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ---------- 127
Query: 155 DLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
V+ +G+++ R++K Y+E SAK+ +DQ F VR K Q++
Sbjct: 128 --VTQEEGQQLARQLKVT-YMEASAKIRMNVDQAFHELVRVIRKFQEQ 172
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VG VGK+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
+R + FL F+I +T S+E+I ++ ++K VP++LVG K DL +
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA- 122
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+T++ ++A + ++ S G Y+E SAK +G++ F VR
Sbjct: 123 -RTVESRQAQD---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VG VGK+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
+R + FL F+I +T S+E+I ++ ++K VP++LVG K DL +
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA- 122
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+T++ ++A + ++ S G Y+E SAK +G++ F VR
Sbjct: 123 -RTVESRQAQD---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VG VGK+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
+R + FL F+I +T S+E+I ++ ++K VP++LVG K DL +
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA- 122
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+T++ ++A + ++ S G Y+E SAK +G++ F VR
Sbjct: 123 -RTVESRQAQD---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 17/172 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VG VGK+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
+R + FL F+I +T S+E+I ++ ++K VP++LVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+T++ ++A + ++ S G Y+E SAK +G++ F VR
Sbjct: 122 GRTVESRQAQD---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 100/204 (49%), Gaps = 19/204 (9%)
Query: 2 LSGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNY 60
+SG +T + KS +K+ +GD VGK+CLL+ E+KF ++ T+ D
Sbjct: 1 MSGLRTVSASSGN--GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58
Query: 61 PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE 120
T+ ++ K + LWDTAGQE + + Y +L + + ++ NI +W+
Sbjct: 59 IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKT 117
Query: 121 LKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179
+ H + ++LVG K+D+ E +V+ QG+ + +++ ++E SA
Sbjct: 118 VNEHANDEAQLLLVGNKSDM-------------ETRVVTADQGEALAKEL-GIPFIESSA 163
Query: 180 KLNEGLDQVFIAAVRSAVKKQDKS 203
K ++ ++++F + +K D +
Sbjct: 164 KNDDNVNEIFFTLAKLIQEKIDSN 187
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I + ++K VP++LVG K+DL S +T+D K+A +
Sbjct: 77 EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDLPS--RTVDTKQAQD 133
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
++ S G ++E SAK +G+D F VR K ++K
Sbjct: 134 ---LARSYG---------IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I + ++K VP++LVG K+DL S +T+D K+A +
Sbjct: 77 EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDLPS--RTVDTKQAQD 133
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
++ S G ++E SAK +G+D F VR K ++K
Sbjct: 134 ---LARSYG---------IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 20/184 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITVDNKTYDVTLWDTAGQE 82
KV +GDG VGK+ L+ + NKF T T+ + + + VD + +WDTAGQE
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKA 137
+ LR Y +DC LL FS+ + S++N LS W E ++ P +++G K
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D+ SE + VST + + R Y E SAK + F AVR +
Sbjct: 127 DI-SERQ------------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
Query: 198 KKQD 201
+D
Sbjct: 174 ATED 177
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV VG G VGK+ L + ++F DY PT D+Y + +D + + + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
+R + + + FL FSI S+ E IL E VP +LVG K+
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 133
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
DL DK++ VS + K R + Y+E SAK +D+VF +R
Sbjct: 134 DLE------DKRQ------VSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMR 177
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV VG G VGK+ L + ++F DY PT D+Y + +D + + + DTAGQEDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
+R + + + FL FSI S+ E IL E VP +LVG K+
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 121
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
DL DK++ VS + K R + Y+E SAK +D+VF +R
Sbjct: 122 DLE------DKRQ------VSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMR 165
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV VG G VGK+ L + ++F DY PT D+Y + +D + + + DTAG EDY
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
+R + + + FLL FSI S+ E IL +K K+P+++VG K+
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILR-----VKAEEDKIPLLVVGNKS 123
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
DL E + + ++A + + + +Y+E SAK +D+VF +R
Sbjct: 124 DL-EERRQVPVEEA------------RSKAEEWGVQYVETSAKTRANVDKVFFDLMR 167
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV VG G VGK+ L + ++F DY PT D+Y + +D + + + DTAGQEDY
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
+R + + + FL FSI S+ E IL E VP +LVG K+
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 129
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
DL DK++ VS + K R + Y+E SAK +D+VF +R
Sbjct: 130 DLE------DKRQ------VSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMR 173
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YVPT+ + +P + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 127
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D+K A+ + RK K +Y + SAK N ++ F+ R +
Sbjct: 128 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
+K+ +GD VGK+CLL+ E+KF ++ T+ D T+ ++ K + LWDTAGQE
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
+ + Y +L + + ++ NI +W+ + H + ++LVG K+D+
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-- 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
E +V+ QG+ + +++ ++E SAK ++ ++++F + +K D
Sbjct: 125 -----------ETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAKLIQEKID 172
Query: 202 KS 203
+
Sbjct: 173 SN 174
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV VG G VGK+ L + ++F DY PT D+Y + +D + + + DTAG EDY
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
+R + + + FLL FSI S+ E IL +K K+P+++VG K+
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILR-----VKAEEDKIPLLVVGNKS 119
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
DL E + + ++A + + + +Y+E SAK +D+VF +R
Sbjct: 120 DL-EERRQVPVEEA------------RSKAEEWGVQYVETSAKTRANVDKVFFDLMR 163
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
KV +GD VGK+ LL T N+F + T+ + +I VD KT +WDTAGQE
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
Y R+ Y LL + I +YEN+ +W EL+ H + I+LVG K+DLR
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
+K+ +GD VGK+CLL+ E+KF ++ T+ D T+ ++ K + +WDTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
+ + Y +L + I ++ NI +W+ + H + ++LVG K+D+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-- 120
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
E +V+ QG+ + +++ ++E SAK ++ ++++F + +K D
Sbjct: 121 -----------ETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAKLIQEKID 168
Query: 202 KS 203
+
Sbjct: 169 SN 170
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITVDNKTYDVTLWDTAGQE 82
KV +GDG VGK+ L+ + NKF T T+ + + + VD + +WDTAGQE
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKA 137
+ LR Y +DC LL FS+ + S++N LS W E ++ P +++G K
Sbjct: 70 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D+ SE + VST + + R Y E SAK + F AVR +
Sbjct: 129 DI-SERQ------------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
K+ K+ +G VGK+ L I E +F Y PT+ + + ITV+ + Y + L DTAGQ
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64
Query: 82 EDYERLRPMSYP-NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV--PIILVGTKAD 138
++Y + P +Y + + ++L +S+ S S+E ++ + +L KV PI+LVG K D
Sbjct: 65 DEYS-IFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
L E ++S +GK + AA +LE SAK N+ VF + A +
Sbjct: 123 LHMER------------VISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEA-E 168
Query: 199 KQDKSCC 205
K D +C
Sbjct: 169 KMDGACS 175
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAG E+Y +R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I + ++K VP++LVG K DL S +T+D K+A +
Sbjct: 94 EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQD 150
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
++ S G ++E SAK +G+D F VR K ++K
Sbjct: 151 ---LARSYG---------IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 187
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 83/177 (46%), Gaps = 26/177 (14%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV VG G VGK+ L + ++F DY PT D+Y + +D + + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
+R + + + FL FSI S+ E IL E VP +LVG K+
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 119
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
DL DK++ VS + K R Y+E SAK +D+VF +R
Sbjct: 120 DLE------DKRQ------VSVEEAKN-RADQWNVNYVETSAKTRANVDKVFFDLMR 163
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ +GD VGK+CLL+ E+KF ++ T+ D T+ ++ K + LWDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
+ + Y +L + + ++ NI +W+ + H + ++LVG K+D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD---- 119
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
E +V+ QG+ + +++ ++E SAK ++ ++++F + +K D
Sbjct: 120 ---------XETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
Query: 203 S 203
+
Sbjct: 170 N 170
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YVPT+ + +P + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
K KA + RK K +Y + SAK N ++ F+ R +
Sbjct: 130 -----KVKAKSI---------VFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ +GD VGK+CLL+ E+KF ++ T+ D T+ ++ K + +WDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
+ + Y +L + I ++ NI +W+ + H + ++LVG K+D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD---- 119
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
E +V+ QG+ + +++ ++E SAK ++ ++++F + +K D
Sbjct: 120 ---------XETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
Query: 203 S 203
+
Sbjct: 170 N 170
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 16/189 (8%)
Query: 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTL 75
+K+ K+ +GD VGKTC+L +E+ F + ++ T+ D TI +D K + +
Sbjct: 2 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61
Query: 76 WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVG 134
WDTAGQE + + Y +L + I + S++NI W ++ H V +++G
Sbjct: 62 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILG 120
Query: 135 TKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
K D+ DK++ VS +G+K+ +++E SAK N ++ F R
Sbjct: 121 NKCDVN------DKRQ------VSKERGEKLALDY-GIKFMETSAKANINVENAFFTLAR 167
Query: 195 SAVKKQDKS 203
K DK+
Sbjct: 168 DIKAKMDKN 176
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 20/177 (11%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITVDNKTYDVTLWDTAGQE 82
K+ +GDG VGK+ L+ + NKF + T+ + + + VD + +WDTAGQE
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKA 137
+ LR Y +DC LL FS+ + S++N LS W E ++ P +++G K
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
D++ VST + + + Y E SAK + + F AVR
Sbjct: 131 DIKERQ-------------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVR 174
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 16/181 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGKTC+L +E+ F + ++ T+ D TI +D K + +WDTAGQE
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
+ + Y +L + I + S++NI W ++ H V +++G K D+
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVN- 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
DK++ VS +G+K+ +++E SAK N ++ F R K D
Sbjct: 125 -----DKRQ------VSKERGEKLALDY-GIKFMETSAKANINVENAFFTLARDIKAKMD 172
Query: 202 K 202
K
Sbjct: 173 K 173
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K+DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
KV +GD VGK+ LL T N+F + T+ + +I VD KT +WDTAGQE
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
Y + Y LL + I +YEN+ +W EL+ H + I+LVG K+DLR
Sbjct: 81 RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 138
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 23/180 (12%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ K+ +G G VGK+ L + + F Y PT+ D+Y + VD + + + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK------VPIILVGT 135
E + +R + N F L +SI + S++ ++ +L+ + VP+ILVG
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL-----QDLREQILRVKDTDDVPMILVGN 116
Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
K DL E +V QG+ + R+ +LE SAK ++++F VR
Sbjct: 117 KCDLEDER------------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 164
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81
+ KV +G+G VGKT L++ + ENKF ++ T+ ++ + + K ++ +WDTAGQ
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLR 140
E + L P+ Y +++ +L + I S++ + W EL+ ++ + +VG K DL
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
E VS + + + A Y SAK N+G++++F+
Sbjct: 125 KERH------------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELFL 161
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
KV +GD VGK+ LL T N+F + T+ + +I VD KT +WDTAGQE
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
Y + Y LL + I +YEN+ +W EL+ H + I+LVG K+DLR
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 83 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 139
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 140 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 168
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81
+ KV +G+G VGKT L++ + ENKF ++ T+ ++ + + K ++ +WDTAGQ
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLR 140
E + L P+ Y +++ +L + I S++ + W EL+ ++ + +VG K DL
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
E VS + + + A Y SAK N+G++++F+
Sbjct: 125 KERH------------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELFL 161
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81
+ KV +G+G VGKT L++ + ENKF ++ T+ ++ + + K ++ +WDTAGQ
Sbjct: 20 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLR 140
E + L P+ Y +++ +L + I S++ + W EL+ ++ + +VG K DL
Sbjct: 80 ERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
E VS + + + A Y SAK N+G++++F+
Sbjct: 139 KERH------------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELFL 175
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 83/177 (46%), Gaps = 26/177 (14%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV VG G VGK+ L + ++F DY PT D+Y + +D + + + DTAG EDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
+R + + + FL FSI S+ E IL E VP +LVG K+
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 121
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
DL DK++ VS + K R + Y+E SAK +D+VF +R
Sbjct: 122 DLE------DKRQ------VSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMR 165
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YV T+ + +P + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 127
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D+K A+ + RK K +Y + SAK N ++ F+ R +
Sbjct: 128 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVD-NKTYDVTLWDTAGQ 81
LKV +GD VGKT L+ + +K+ Y T+ D +TVD +K + +WDTAGQ
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTK 136
E ++ L Y DC +L + + + SS+ENI S W E H P +++G K
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNK 127
Query: 137 ADLRSENKTIDKKKAAEV 154
D K + +K A E+
Sbjct: 128 IDAEESKKIVSEKSAQEL 145
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 22/185 (11%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITVDNKTYDVTLWDTAGQE 82
LKV +GDG VGK+ L+ + NKF + T+ + + + VD + + +WDTAGQE
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKA 137
++ LR Y DC LL FS+ S+EN L W E ++ P +++G K
Sbjct: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFEN-LGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS-- 195
D E++ V+T + + + YLE SAK + + F AVR
Sbjct: 127 D--KEDRQ-----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
Query: 196 AVKKQ 200
AV++Q
Sbjct: 174 AVEEQ 178
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YV T+ + +P + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
Y LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 127
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D+K A+ + RK K +Y + SAK N ++ F+ R +
Sbjct: 128 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 18/180 (10%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
K+ K+ +G VGK+ L I E +F Y PT+ + + ITV+ + Y + L DTAGQ
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64
Query: 82 EDYERLRPMSYP-NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV--PIILVGTKAD 138
++Y + P +Y + + ++L +S+ S S+E ++ + +L KV PI+LVG K D
Sbjct: 65 DEYS-IFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
L E ++S +GK + AA +LE SAK N+ VF + A K
Sbjct: 123 LHMER------------VISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEAEK 169
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 81 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 137
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 138 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 166
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 81 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 137
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 138 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 166
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 13/175 (7%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ K+ +G G VGK+ L + + F +Y PT+ D+Y + VD + + + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLR 140
E + +R + N F L +SI + S++ ++ L+ VP+ILVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
E +V QG+ + R+ +LE SAK ++++F VR
Sbjct: 122 DER------------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 18/168 (10%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ +G VGK+ L I E +F Y PT+ + + ITV+ + Y + L DTAGQ++Y
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 85 ERLRPMSYP-NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV--PIILVGTKADLRS 141
+ P +Y + + ++L +S+ S S+E ++ + +L KV PI+LVG K DL
Sbjct: 63 S-IFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
E ++S +GK + AA +LE SAK N+ VF
Sbjct: 121 ER------------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 155
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 17/162 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVRE 162
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG + DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNRCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YV T+ + +P + +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 120
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D+K A+ + RK K +Y + SAK N ++ F+ R +
Sbjct: 121 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 162
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y P++ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 82 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 138
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 139 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 167
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 13/175 (7%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ K+ +G G VGK+ L + + F Y PT+ D+Y + VD + + + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLR 140
E + +R + N F L +SI + S++ ++ L+ VP+ILVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
E +V QG+ + R+ +LE SAK ++++F VR
Sbjct: 122 DER------------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YV T+ + +P + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
K KA + RK K +Y + SAK N ++ F+ R +
Sbjct: 130 -----KVKAKSI---------VFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YV T+ + +P + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 132
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D+K A+ + RK K +Y + SAK N ++ F+ R +
Sbjct: 133 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 174
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YV T+ + +P + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 127
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D+K A+ + RK K +Y + SAK N ++ F+ R +
Sbjct: 128 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y P++ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F ++ PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DT GQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
KV +GD VGK+ LL T N+F + T+ + +I VD KT +WDTAG E
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
Y + Y LL + I +YEN+ +W EL+ H + I+LVG K+DLR
Sbjct: 69 RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 126
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YV T+ + +P + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 127
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D+K A+ + RK K +Y + SAK N ++ F+ R +
Sbjct: 128 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTA QE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ ++Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D + + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTA QE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAG+E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DT GQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
KV +GD VGK+ LL T N+F + T+ + +I VD KT +WDTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
Y + Y LL + I +YEN+ +W EL+ H + I+LVG K+DLR
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 17/172 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F Y+ T+ + +P + + +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y N C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
K KA + RK K +Y + SAK N ++ F+ R
Sbjct: 125 -----KVKAKTITF---------HRK-KNLQYYDISAKSNYNFEKPFLWLAR 161
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGKTCL+ T+ FP T+ D T+ ++ + + +WDTAGQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLRS 141
+ + Y + + +L + I S+ L +W E++ + KV +LVG K DL +
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDL-A 144
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
E + + +++A E S+ + M YLE SAK ++ ++++F+
Sbjct: 145 ERREVSQQRAEEF-----SEAQDMY-------YLETSAKESDNVEKLFL 181
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 23/180 (12%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ K+ +G VGK+ L + + F Y PT+ D+Y + VD + + + DTAG
Sbjct: 4 REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK------VPIILVGT 135
E + +R + N F L +SI + S++ ++ +L+ + VP+ILVG
Sbjct: 64 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL-----QDLREQILRVKDTDDVPMILVGN 118
Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
K DL E +V QG+ + R+ +LE SAK ++++F VR
Sbjct: 119 KCDLEDER------------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 166
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 17/172 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F Y+ T+ + +P + + +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y N C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
K KA + RK K +Y + SAK N ++ F+ R
Sbjct: 124 -----KVKAKTITF---------HRK-KNLQYYDISAKSNYNFEKPFLWLAR 160
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
+V G G VGK+ L++ + F Y+PTV D Y I+ D + + DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 64
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSE 142
++ +S F+L +SI S S E + + + E+K +PI+LVG K D
Sbjct: 65 PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
+ V +S+ + + R K A ++E SAKLN + ++F
Sbjct: 125 RE------------VQSSEAEALARTWKCA-FMETSAKLNHNVKELF 158
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YV T+ + +P + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 129
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D+K A+ + RK K +Y + SAK N ++ F+ R +
Sbjct: 130 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 171
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
KV +GD VGK+ LL T N+F + T+ + +I VD KT +WDTAG E
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
Y + Y LL + I +YEN+ +W EL+ H + I LVG K+DLR
Sbjct: 66 RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 123
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 18/171 (10%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
K+ K+ +G VGK+ L I E +F PT+ + + ITV+ + Y + L DTAGQ
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 82 EDYERLRPMSYP-NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV--PIILVGTKAD 138
++Y + P +Y + + ++L +S+ S S+E ++ + +L KV PI+LVG K D
Sbjct: 63 DEYS-IFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKD 120
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
L E ++S +GK + AA +LE SAK N+ VF
Sbjct: 121 LHMER------------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 158
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YV T+ + +P + +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 123
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D+K A+ + RK K +Y + SAK N ++ F+ R +
Sbjct: 124 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 165
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
KV +GD VGK+ LL T N+F + T+ + +I VD KT +WDTAG E
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
Y + Y LL + I +YEN+ +W EL+ H + I LVG K+DLR
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 129
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F + PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K+DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAG E+Y +R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 81 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 137
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 138 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 166
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
LKV +GD VGKT L+ + KF Y T+ D + VD++ + +WDTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE-LKHHCPK----VPIILVGTKA 137
++ L Y DC +L F + + ++++ L W E L P+ P +++G K
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKT-LDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
DL EN+ + K+A + Y E SAK ++Q F R+A+
Sbjct: 128 DL--ENRQVATKRAQAWCYSKNN-----------IPYFETSAKEAINVEQAFQTIARNAL 174
Query: 198 KKQ 200
K++
Sbjct: 175 KQE 177
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+ +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 18/184 (9%)
Query: 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLW 76
+ V LK+ +G+ VGK+ LL+ T++ F + T+ D TI+VD + +W
Sbjct: 10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69
Query: 77 DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPII--LVG 134
DTAGQE + L P Y +L + + ++ L W EL+ +C + I+ LVG
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVK-LDNWLNELETYCTRNDIVNXLVG 128
Query: 135 TKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
K D EN+ +D+ ++G K RK + ++E SAK +G+ F V
Sbjct: 129 NKID--KENREVDR-----------NEGLKFARK-HSXLFIEASAKTCDGVQCAFEELVE 174
Query: 195 SAVK 198
++
Sbjct: 175 KIIQ 178
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 23/188 (12%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV +G VGKT L E +F Y PTV + Y +T+ + + L DTAGQ++Y
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY 85
Query: 85 ERLRPMSY-PNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRS 141
L P S+ ++L +S+ S S++ ++ Y +L H +VP++LVG KADL
Sbjct: 86 SIL-PYSFIIGVHGYVLVYSVTSLHSFQ-VIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK--- 198
E + V +GKK+ A ++E SA+ N+ +F ++ +
Sbjct: 144 ERE------------VQAVEGKKLAESW-GATFMESSARENQLTQGIFTKVIQEIARVEN 190
Query: 199 --KQDKSC 204
Q++ C
Sbjct: 191 SYGQERRC 198
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
LKV +GD VGKT L+ + KF Y T+ D + VD++ + +WDTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE-LKHHCPK----VPIILVGTKA 137
++ L Y DC +L F + + ++++ L W E L P+ P +++G K
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKT-LDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
DL EN+ + K+A + Y E SAK ++Q F R+A+
Sbjct: 128 DL--ENRQVATKRAQAWCYSKNN-----------IPYFETSAKEAINVEQAFQTIARNAL 174
Query: 198 KKQ 200
K++
Sbjct: 175 KQE 177
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y +R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I ++ S+ +I + + ++K VP++LVG K DL + +T+D K+A E
Sbjct: 94 EGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHE 150
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ K ++E SAK +G++ F VR
Sbjct: 151 L------------AKSYGIPFIETSAKTRQGVEDAFYTLVR 179
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I +N F +Y PT+ D+Y + +D +T + + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
+ FL F+I +T S+E+I ++ ++K VP++LVG K DL + +T++ ++A +
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
++ S G Y+E SAK +G++ F VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK+CLL+ ++ + Y+ T+ D TI+++NKT + +WDTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
+ + Y ++ + + S++N+ +W E+ ++ V +LVG K DL S
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDLVS 128
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
+ +V++ +G+++ +++E SAK ++Q F
Sbjct: 129 KR------------VVTSDEGRELADS-HGIKFIETSAKNAYNVEQAF 163
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YV T+ + +P + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ L Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 127
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D+K A+ + RK K +Y + SAK N ++ F+ R +
Sbjct: 128 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 17/172 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F Y+ T+ + +P + + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y N C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
K KA + RK K +Y + SAK N ++ F+ R
Sbjct: 132 -----KVKAKTI---------TFHRK-KNLQYYDISAKSNYNFEKPFLWLAR 168
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK+CLL+ ++ + Y+ T+ D TI +D KT + +WDTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
+ + Y ++ + + SY N+ +W E+ ++ V +LVG K+DL +
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLTT 128
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+ K +D A E + S G +LE SAK ++Q F+ + + +KK+
Sbjct: 129 K-KVVDNTTAKE---FADSLG---------IPFLETSAKNATNVEQAFM-TMAAEIKKR 173
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK+CLL+ ++ + Y+ T+ D TI +D KT + +WDTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
+ + Y ++ + + SY N+ +W E+ ++ V +LVG K+DL +
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLTT 128
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+ K +D A E + S G +LE SAK ++Q F+ + + +KK+
Sbjct: 129 K-KVVDNTTAKE---FADSLG---------IPFLETSAKNATNVEQAFM-TMAAEIKKR 173
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YV T+ + +P + +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
K KA + RK K +Y + SAK N ++ F+ R +
Sbjct: 130 -----KVKAKSI---------VFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 15/144 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDN---------KTYDV- 73
+K+ +GD VGKT L +T+NKF ++ TV ++ + V N K + V
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 74 -TLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPI 130
LWDTAGQE + L + + FLL F + S S+ N+ W +L+ +C I
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDI 144
Query: 131 ILVGTKADLRSENKTIDKKKAAEV 154
+L+G KADL + + +++++A E+
Sbjct: 145 VLIGNKADL-PDQREVNERQAREL 167
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
LKV +GD VGKT L+ + KF Y T+ D + VD++ + +WDTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE-LKHHCPK----VPIILVGTKA 137
++ L Y DC +L F + + ++++ L W E L P+ P +++G K
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKT-LDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D EN+ + K+A + Y E SAK ++Q F R+A+
Sbjct: 128 DF--ENRQVATKRAQAWCYSKNN-----------IPYFETSAKEAINVEQAFQTIARNAL 174
Query: 198 KKQ 200
K++
Sbjct: 175 KQE 177
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGKT L + ++ F +V TV D TI ++K + +WDTAGQE
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRS 141
Y + Y F+L + I + S+ N + W ++K + ++LVG K D+
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
E +VS+ +G+++ + E+ E SAK N + Q F
Sbjct: 125 ER------------VVSSERGRQLADHL-GFEFFEASAKDNINVKQTF 159
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H + YV T+ + +P + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 132
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
D+K A+ + RK K +Y + SAK N ++ F+ R +
Sbjct: 133 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 174
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVT 74
KS S KA K+ GD VGK+ L+ +N+F + T+ D T+ VD + +
Sbjct: 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQ 80
Query: 75 LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILV 133
LWDTAGQE + + + D LL + + S+ NI +W ++ + VPI+LV
Sbjct: 81 LWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLV 139
Query: 134 GTKADLRSENKTIDKK 149
G KAD+R T +K
Sbjct: 140 GNKADIRDTAATEGQK 155
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 17/184 (9%)
Query: 23 ALKVTTVGDGMVGKTCLLITHTENKFPTD-YVPTVFDNYPDTIT-VDNKTYDVTLWDTAG 80
A KV VGD VGKTCLL+ + F ++ TV ++ + + VD + +WDTAG
Sbjct: 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADL 139
QE + + Y + LL + + + +S++NI W E+ + V ++L+G K D
Sbjct: 70 QERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVD- 127
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
+A +V G+K+ ++ ++E SAK +D F A + ++
Sbjct: 128 -----------SAHERVVKREDGEKLAKEY-GLPFMETSAKTGLNVDLAFTAIAKELKRR 175
Query: 200 QDKS 203
K+
Sbjct: 176 SMKA 179
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK+ LL+ +N F Y+ T+ D T+ ++ + + +WDTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ + Y T ++ + + S S+ N+ +W E+ +C V ILVG K D
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKND---- 124
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
E +V T K ++ + E SAK N ++++F
Sbjct: 125 --------DPERKVVETEDAYKFAGQM-GIQLFETSAKENVNVEEMF 162
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81
++K+ +G+ VGK+ +++ N F + PT+ + +T++ T +WDTAGQ
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLR 140
E + L P Y N L+ + + S+ W EL K + I LVG K D
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDIIIALVGNKIDXL 121
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
E ++K A E +G+K+ + K + E SAK E ++ VF+
Sbjct: 122 QEGG--ERKVARE-------EGEKLAEE-KGLLFFETSAKTGENVNDVFLG 162
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE 82
K +GD VGK+CLL+ T+ +F P + + IT+D K + +WDTAGQE
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
+ + Y LL + I ++ N L+ W + + H + I+L+G K+DL S
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLIGNKSDLES 129
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
+ V +G+ R+ ++E SAK +++ FI + +K
Sbjct: 130 RRE------------VKKEEGEAFARE-HGLIFMETSAKTASNVEEAFINTAKEIYEK 174
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
LKV +GD VGKT L+ + KF Y T+ D + VD++ + +WDTAG E
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE-LKHHCPK----VPIILVGTKA 137
++ L Y DC +L F + + ++++ L W E L P+ P +++G K
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKT-LDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
DL EN+ V+T + + Y E SAK ++Q F R+A+
Sbjct: 128 DL--ENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 198 KKQ 200
K++
Sbjct: 175 KQE 177
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGKT L + ++ F +V TV D T+ +K + +WDTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRS 141
Y + Y FLL + I + S+ + W ++K + +ILVG K DL
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
E +V G+++ + E+ E SAK N + QVF
Sbjct: 142 ER------------VVPAEDGRRLADDL-GFEFFEASAKENINVKQVF 176
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 16/181 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK+ LL T+N+F D T+ + T+ ++ K +WDTAGQE
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y + Y L+ + I +SSYEN + W EL+ + V + L+G K+DL
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDL-- 130
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
A + V T + K ++ + + E SA +E +D+ F + + +K
Sbjct: 131 ----------AHLRAVPTEESKTFAQENQLL-FTETSALNSENVDKAFEELINTIYQKVS 179
Query: 202 K 202
K
Sbjct: 180 K 180
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 16/173 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K +GD VGK+CLL TE KF D T+ + I V + + +WDTAGQE
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
+ + Y L+ + I S+Y N LS W + ++ P IIL+G KADL +
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKADLEA 134
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ V+ + K+ + +LE SAK E ++ F+ A +
Sbjct: 135 QRD------------VTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAK 174
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L I ++ F +DY PT+ D+Y +VD + + DTAGQE++ +R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 96 DCFLLCFSIGSTSSYENILSKWYPELKHHCPK--VPIILVGTKADLRSENKTIDKKKAAE 153
FLL F+I S+ N + K + ++ + P++LVG KADL S+ +
Sbjct: 82 HGFLLVFAINDRQSF-NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------- 131
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKSC 204
V S+ A Y E SAKL +D+ F VR+ K Q++
Sbjct: 132 ---VPRSEASAFGASHHVA-YFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 16/180 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
K +G GK+CLL ENKF D T+ + + V KT + +WDTAGQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH-HCPKVPIILVGTKADLRS 141
+ + Y LL + I S +Y N L+ W + + P + +IL G K DL
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETY-NSLAAWLTDARTLASPNIVVILCGNKKDLDP 144
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
E EV + S+ + + +LE SA E +++ F+ R+ + K D
Sbjct: 145 ER---------EVTFLEASRFAQENELM----FLETSALTGENVEEAFLKCARTILNKID 191
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAG 80
+ K+ +G+ VGKT L+ + F Y T+ D T+ ++++T + LWDTAG
Sbjct: 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADL 139
QE + L P ++ ++ + I +T+S+ SKW +++ V I+LVG K DL
Sbjct: 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDL 131
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
DK++ VST +G++ +++ ++E SAK + Q+F
Sbjct: 132 S------DKRQ------VSTEEGERKAKELNVM-FIETSAKAGYNVKQLF 168
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYD---------- 72
+K+ +GD VGKT L +T+NKF ++ TV D + D + D
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 73 VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPI 130
+ LWDTAG E + L + + FLL F + S S+ N+ W +L+ +C I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPDI 130
Query: 131 ILVGTKADLRSENKTIDKKKAAEV 154
+L+G KADL + + +++++A E+
Sbjct: 131 VLIGNKADL-PDQREVNERQAREL 153
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ +GD VGK+CLL+ ++ + Y+ T+ D TI +D KT + +WDTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRSE 142
+ + Y ++ + + S+ N+ +W E+ ++ V +LVG K DL ++
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
K +D A E + S G +LE SAK ++Q F+
Sbjct: 120 -KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM 154
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK+CLL+ ++ + Y+ T+ D TI +D KT + +WDTAGQE
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
+ + Y ++ + + S+ N+ +W E+ ++ V +LVG K DL +
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 125
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+ K +D A E + S G +LE SAK ++Q F+ + + +KK+
Sbjct: 126 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM-TMAAEIKKR 170
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK+CLL+ ++ + Y+ T+ D TI +D KT + +WDTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
+ + Y ++ + + S+ N+ +W E+ ++ V +LVG K DL +
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 135
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+ K +D A E + S G +LE SAK ++Q F+ + + +KK+
Sbjct: 136 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM-TMAAEIKKR 180
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+ L++ + +F T+ + T+ +D+ T +WDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y L PM Y ++ + I +T ++ W EL+ P + I L G KADL S
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
K+A E Q + + ++E SAK ++++F+A
Sbjct: 125 -------KRAVEF------QEAQAYADDNSLLFMETSAKTAMNVNEIFMA 161
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK+CLL+ ++ + Y+ T+ D TI +D KT + +WDTAGQE
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
+ + Y ++ + + S+ N+ +W E+ ++ V +LVG K DL +
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 144
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+ K +D A E + S G +LE SAK ++Q F+ + + +KK+
Sbjct: 145 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM-TMAAEIKKR 189
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK+CLL+ ++ + Y+ T+ D TI +D KT + +WDTAGQE
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
+ + Y ++ + + S+ N+ +W E+ ++ V +LVG K DL +
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 125
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+ K +D A E + S G +LE SAK ++Q F+ + + +KK+
Sbjct: 126 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM-TMAAEIKKR 170
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYD---------- 72
+K+ +GD VGKT L +T+NKF ++ TV D + D + D
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 73 VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPI 130
+ LWDTAG E + L + + FLL F + S S+ N+ W +L+ +C I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPDI 130
Query: 131 ILVGTKADLRSENKTIDKKKAAEV 154
+L+G KADL + + +++++A E+
Sbjct: 131 VLIGNKADL-PDQREVNERQAREL 153
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+ L++ + +F T+ + T+ +D+ T +WDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y L PM Y ++ + I +T ++ W EL+ P + I L G KADL S
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
K+A E Q + + ++E SAK ++++F+A
Sbjct: 123 -------KRAVEF------QEAQAYADDNSLLFMETSAKTAMNVNEIFMA 159
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYD---------- 72
+K+ +GD VGKT L +T+NKF ++ TV D + D + D
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 73 VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPI 130
+ LWDTAG E + L + + FLL F + S S+ N+ W +L+ +C I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDI 130
Query: 131 ILVGTKADLRSENKTIDKKKAAEV 154
+L+G KADL + + +++++A E+
Sbjct: 131 VLIGNKADL-PDQREVNERQAREL 153
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYD---------- 72
+K+ +GD VGKT L +T+NKF ++ TV D + D + D
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 73 VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPI 130
+ LWDTAG E + L + + FLL F + S S+ N+ W +L+ +C I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDI 130
Query: 131 ILVGTKADLRSENKTIDKKKAAEV 154
+L+G KADL + + +++++A E+
Sbjct: 131 VLIGNKADL-PDQREVNERQAREL 153
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK+CLL+ ++ + Y+ T+ D TI +D KT + +WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
+ + Y ++ + + S+ N+ +W E+ ++ V +LVG K DL +
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLTT 127
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+ K +D A E + S G +LE SAK ++Q F+ + + +KK+
Sbjct: 128 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM-TMAAEIKKR 172
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 16/175 (9%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAG 80
+ LKV +GD VGK+ ++ E+ F + PT+ ++ T+ N+ + +WDTAG
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
QE + L PM Y + ++ + I ++ L W EL+ H P + + + G K DL
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETFST-LKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ +++ D + A ++E SAK ++++FI R
Sbjct: 123 TDVREVMERDAKDYADSIH-------------AIFVETSAKNAININELFIEISR 164
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 17/179 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK CLL+ ++ + Y+ T+ D TI +D KT + +WDTAGQE
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
+ + Y ++ + + S+ N+ +W E+ ++ V +LVG K DL +
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 135
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+ K +D A E + S G +LE SAK ++Q F+ + + +KK+
Sbjct: 136 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM-TMAAEIKKR 180
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 24/197 (12%)
Query: 11 GDKDVKSKSVHKA--LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDN 68
G +++ +S+ K+ +K+ G VGK+ L++ +F +Y PT+ Y T+D+
Sbjct: 14 GTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDD 73
Query: 69 KTYDVTLWDTAGQED-YERLRPMSYPNTDCFLLCFSIGSTSSYENI--LSKWYPELKHHC 125
+ + + DTAGQED +R M + + F+L + I S+E + L E+K
Sbjct: 74 EVVSMEILDTAGQEDTIQREGHMRWG--EGFVLVYDITDRGSFEEVLPLKNILDEIKK-- 129
Query: 126 PK-VPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG 184
PK V +ILVG KADL + VST +G+K+ ++ A Y ECSA EG
Sbjct: 130 PKNVTLILVGNKADLDHSRQ------------VSTEEGEKLATELACAFY-ECSACTGEG 176
Query: 185 -LDQVFIAAVRSAVKKQ 200
+ ++F R +++
Sbjct: 177 NITEIFYELCREVRRRR 193
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK+CLL+ ++ + Y+ T+ D TI +D KT + +WDTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
+ + Y ++ + + S+ N+ +W E+ ++ V +LVG K DL +
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 152
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
+ K +D A E + S G +LE SAK ++Q F
Sbjct: 153 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSF 187
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 15 VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDV 73
V S + LKV +GD VGK+ ++ ++ F + PT+ ++ T+ N+ +
Sbjct: 15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKF 74
Query: 74 TLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIIL 132
+WDTAGQE + L PM Y + ++ + I S+ L KW ELK H P+ + + +
Sbjct: 75 LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYT-LKKWVKELKEHGPENIVMAI 133
Query: 133 VGTKADLRSENKTIDKKKAAE 153
G K DL S+ + + K A E
Sbjct: 134 AGNKCDL-SDIREVPLKDAKE 153
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 15 VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDV 73
V S + K+ +GD VGKTCL +FP T+ D + +D + +
Sbjct: 12 VPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKI 71
Query: 74 TLWDTAGQEDYER-LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPI 130
LWDTAGQE + + + Y N + + + + +S+ + L W E K H +P
Sbjct: 72 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS-LPAWIEECKQHLLANDIPR 130
Query: 131 ILVGTKADLRS 141
ILVG K DLRS
Sbjct: 131 ILVGNKCDLRS 141
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQED 83
K+ +GD GK+ L++ +++F T+ + T+ V++ T +WDTAGQE
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
Y L PM Y ++ F + + +S+E KW EL+ P + + L G K+DL
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDL--- 129
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+D +K D + +Q + ++E SAK + ++F R
Sbjct: 130 ---LDARKVTAEDAQTYAQENGLF-------FMETSAKTATNVKEIFYEIAR 171
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGKT L + ++ F +V TV D TI ++K + +WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRS 141
Y + Y F+L + I + S+ N + W ++K + ++LVG K D
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED 127
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
E +VS+ +G+++ + E+ E SAK N + Q F
Sbjct: 128 ER------------VVSSERGRQLADHL-GFEFFEASAKDNINVKQTF 162
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITV-DNKTYDVTLWDTAGQ 81
K+ +GD VGK+ LL T ++F + T+ + +I + +NK +WDTAGQ
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
E Y + Y LL + I +S+ENI KW EL+ + + I+LVG K+DL+
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDLK 126
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGKT L + ++ F +V TV D T+ K + +WDTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRS 141
Y + Y F+L + I + S+ N + W ++K + +ILVG K D+
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
E +V T +G+ + ++ ++ E SAK N + Q F
Sbjct: 143 ER------------VVPTEKGQLLAEQL-GFDFFEASAKENISVRQAF 177
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 16/173 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ +VGK+ L++ + +F T+ + T+ +D+ T +WDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y L PM Y ++ + I + S+ W EL+ P + I L G KADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ +D ++A S + + ++E SAK + ++++F+A +
Sbjct: 125 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 165
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K +GD VGK+CLL TE KF D T+ + I V + + +WDTAGQ
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
+ + Y L+ + I S+Y N LS W + ++ P IIL+G KADL +
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKADLEA 149
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ V+ + K+ + +LE SAK E ++ F+ A +
Sbjct: 150 QRD------------VTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAK 189
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQ 81
A+K+ VG+G VGK+ ++ + + F DY T+ D I V+++ + LWDTAGQ
Sbjct: 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL 139
E+++ + Y +L FS S+E I S W ++ +P LV K DL
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDL 121
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+CLL+ +++ + DY+ T+ D T+ +D KT + +WDTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKADLRS 141
+ + Y + ++ + + S+ N + W E+ + + +LVG K DL+
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127
Query: 142 ENKTIDKKKAAEVDLVST-SQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
K+ E D+ + KM +LE SA + ++ F+ R
Sbjct: 128 -------KRVVEYDVAKEFADANKM-------PFLETSALDSTNVEDAFLTMAR 167
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 16/178 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE 82
K +GD VGK+CLL+ T+ +F P + + + +D K + +WDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRS 141
+ + Y LL + I ++ N L+ W + + H + I+L+G K+DL S
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETF-NHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
V +G+ R+ ++E SAK +++ FI + +K
Sbjct: 141 RRD------------VKREEGEAFARE-HGLIFMETSAKTACNVEEAFINTAKEIYRK 185
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+CLL+ +++ + DY+ T+ D T+ +D KT + +WDTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKADLRS 141
+ + Y + ++ + + S+ N + W E+ + + +LVG K DL+
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127
Query: 142 ENKTIDKKKAAEVDLVST-SQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
K+ E D+ + KM +LE SA + ++ F+ R
Sbjct: 128 -------KRVVEYDVAKEFADANKM-------PFLETSALDSTNVEDAFLTMAR 167
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 15/178 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
L+V +G VGKT L+ T++ F TV D T+ + K + +WDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
+ + Y + +L + I ++++ L KW + K+ ++LVG K D +
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
+ + ++ QG+K ++I + E SAK N +D++F+ V +KK
Sbjct: 146 DRE------------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWD 77
S + LKV +GD VGK+ ++ E+ F + PT+ ++ T+ N+ + +WD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTK 136
TAG E + L PM Y + ++ + I ++ L W EL+ H P + + + G K
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFST-LKNWVRELRQHGPPSIVVAIAGNK 120
Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
DL + +++ D + A ++E SAK ++++FI R
Sbjct: 121 CDLTDVREVMERDAKDYADSIH-------------AIFVETSAKNAININELFIEISR 165
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+CLL+ +++ + DY+ T+ D T+ +D KT + +WDTAGQE
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKADLRS 141
+ + Y + ++ + + S+ N + W E+ + + +LVG K DL+
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 140
Query: 142 ENKTIDKKKAAEVDLV-STSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
K+ E D+ + KM +LE SA + ++ F+ R
Sbjct: 141 -------KRVVEYDVAKEFADANKM-------PFLETSALDSTNVEDAFLTMAR 180
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAG 80
+ K+ +GD VGKTCL +FP T+ D + +D + + LWDTAG
Sbjct: 28 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 87
Query: 81 QEDYER-LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKA 137
QE + + + Y N + + + +S+ + L W E K H +P ILVG K
Sbjct: 88 QERFRKSMVQHYYRNVHAVVFVYDXTNXASFHS-LPAWIEECKQHLLANDIPRILVGNKC 146
Query: 138 DLRS 141
DLRS
Sbjct: 147 DLRS 150
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+ L++ + +F T+ + T+ +D+ T +WDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y L PM Y ++ + I + S+ W EL+ P + I L G KADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ +D ++A S + + ++E SAK + ++++F+A +
Sbjct: 125 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 165
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+ L++ + +F T+ + T+ +D+ T +WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y L PM Y ++ + I + S+ W EL+ P + I L G KADL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 125
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ +D ++A S + + ++E SAK + ++++F+A +
Sbjct: 126 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 166
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGKT L+ + F Y T+ D T+ ++++T + LWDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRS 141
+ L P ++ ++ + I + +S++ +KW +++ V I+LVG K DL
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL-- 118
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
DK++ VS +G++ +++ ++E SAK + Q+F
Sbjct: 119 ----ADKRQ------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLF 155
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+ L++ + +F T+ + T+ +D+ T +WDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y L PM Y ++ + I + S+ W EL+ P + I L G KADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ +D ++A S + + ++E SAK + ++++F+A +
Sbjct: 125 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 165
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAG 80
+ K+ +G+ VGKT L+ + F Y T+ D T+ ++++T + LWDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADL 139
QE + L P ++ ++ + I + +S++ +KW +++ V I+LVG K DL
Sbjct: 65 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
DK++ VS +G++ +++ ++E SAK + Q+F
Sbjct: 124 ------ADKRQ------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLF 160
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+ L++ + +F T+ + T+ +D+ T +WDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y L PM Y ++ + I + S+ W EL+ P + I L G KADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ +D ++A S + + ++E SAK + ++++F+A +
Sbjct: 125 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 165
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+ L++ + +F T+ + T+ +D+ T +WDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y L PM Y ++ + I + S+ W EL+ P + I L G KADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ +D ++A S + + ++E SAK + ++++F+A +
Sbjct: 125 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 165
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+ L++ + +F T+ + T+ +D+ T +WDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y L PM Y ++ + I +T ++ W EL+ P + I L G KADL S
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
K+A E Q + + ++E SAK ++++F+A
Sbjct: 125 -------KRAVEF------QEAQAYADDNSLLFMETSAKTAMNVNEIFMA 161
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGKT L+ + F Y T+ D T+ ++++T + LWDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRS 141
+ L P ++ ++ + I + +S++ SKW +++ V I+LVG K DL
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQT-SKWIDDVRTERGSDVIIMLVGNKTDL-- 119
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
DK++ ++ +G++ R K + ++E SAK + Q+F
Sbjct: 120 ----ADKRQ------ITIEEGEQ-RAKELSVMFIETSAKTGYNVKQLF 156
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK+ LL T ++F + T+ + TI V+NK +WDTAG E
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
Y + Y L+ + I +SSYEN + W EL+ + V + L+G K+DL
Sbjct: 71 RYRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLTELRENADDNVAVGLIGNKSDL 127
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+ L++ + +F T+ + T+ +D+ T +WDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y L PM Y ++ + I + S+ W EL+ P + I L G KADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ +D ++A S + + ++E SAK + ++++F+A +
Sbjct: 125 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 165
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 29 VGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQEDYERL 87
+GD VGK+CLL+ ++ + Y+ T+ D TI +D KT + +WDTAGQE + +
Sbjct: 4 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADL 139
Y ++ + + S+ N+ +W E+ ++ V +LVG K DL
Sbjct: 64 TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAG 80
+ K+ +G+ VGKT L+ + F Y T+ D T+ ++++T + LWDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADL 139
E + L P ++ ++ + I + +S++ +KW +++ V I+LVG K DL
Sbjct: 65 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF---IAAVRSA 196
DK++ VS +G++ +++ ++E SAK + Q+F AA+
Sbjct: 124 ------ADKRQ------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGM 170
Query: 197 VKKQDKS 203
QD+S
Sbjct: 171 ESTQDRS 177
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAG 80
+ K+ +G+ VGKT L+ + F Y T+ D T+ ++++T + LWDTAG
Sbjct: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADL 139
E + L P ++ ++ + I + +S++ +KW +++ V I+LVG K DL
Sbjct: 72 LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 130
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF---IAAVRSA 196
DK++ VS +G++ +++ ++E SAK + Q+F AA+
Sbjct: 131 ------ADKRQ------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGM 177
Query: 197 VKKQDKS 203
QD+S
Sbjct: 178 ESTQDRS 184
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAG 80
+ K+ +G+ VGKT L+ + F Y T+ D T+ ++++T + LWDTAG
Sbjct: 15 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADL 139
E + L P ++ ++ + I + +S++ +KW +++ V I+LVG K DL
Sbjct: 75 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 133
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF---IAAVRSA 196
DK++ VS +G++ +++ ++E SAK + Q+F AA+
Sbjct: 134 ------ADKRQ------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGM 180
Query: 197 VKKQDKS 203
QD+S
Sbjct: 181 ESTQDRS 187
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
K +G+ GK+CLL E KF D T+ + I V K + +WDTAGQE
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLRS 141
+ + Y LL + I S +Y N L+ W + + + + IIL G K DL +
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLDA 129
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
+ EV + S+ + + +LE SA E +++ F+ R + K
Sbjct: 130 DR---------EVTFLEASRFAQENELM----FLETSALTGENVEEAFVQCARKILNK 174
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 15/144 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-----------PDTITVDNKTYD 72
+K +GD VGKT +L +T+ KF + ++ TV ++ PD +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 73 VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPI 130
+ LWDTAG E + L + + FLL F + + S+ N+ W +L+ H I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDI 130
Query: 131 ILVGTKADLRSENKTIDKKKAAEV 154
+L G K+DL + + + +++A E+
Sbjct: 131 VLCGNKSDL-EDQRAVKEEEAREL 153
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+ L++ + +F T+ + T+ +D+ T +WDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y L PM Y ++ + I + S+ W EL+ P + I L G KADL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 123
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ +D ++A S + + ++E SAK + ++++F+A +
Sbjct: 124 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 164
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
K +G+ GK+CLL E KF D T+ + I V K + +WDTAGQE
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLRS 141
+ + Y LL + I S +Y N L+ W + + + + IIL G K DL +
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLDA 130
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
+ EV + S+ + + +LE SA E +++ F+ R + K
Sbjct: 131 DR---------EVTFLEASRFAQENELM----FLETSALTGEDVEEAFVQCARKILNK 175
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+ L++ + +F T+ + T+ +D+ T +WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y L P Y ++ + I + S+ W EL+ P + I L G KADL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 125
Query: 142 ENKTIDKKKA 151
+ +D ++A
Sbjct: 126 NKRAVDFQEA 135
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGK+ L++ + +F T+ + ++ +D+ T +WDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
Y L PM Y ++ + I + ++ W EL+ P + I L G KADL
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARA-KTWVKELQRQASPSIVIALAGNKADL 125
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 16/156 (10%)
Query: 36 KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
K+ L++ + F Y+PT+ D Y I+ D + + DT G + ++ +S
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 96 DCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAE 153
F+L FS+ S S E + + K ++K +P++LVG K D + E
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD----------ETQRE 130
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
VD T + + + ++ K A ++E SAK+N + ++F
Sbjct: 131 VD---TREAQAVAQEWKCA-FMETSAKMNYNVKELF 162
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
KV +G+ VGKT LL T N+F D T+ + T+ + +WDTAG E
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
Y + Y LL F + +Y ++ +W EL H + ++LVG K+DL
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDL 127
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
KV +G+ VGKT LL T N+F D T+ + T+ + +WDTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
Y + Y LL F + +Y ++ +W EL H + ++LVG K+DL
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDL 142
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
K +G+ GK+CLL E KF D T+ + I V K + +WDTAG E
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLRS 141
+ + Y LL + I S +Y N L+ W + + + + IIL G K DL +
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLDA 127
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
+ EV + S+ + + +LE SA E +++ F+ R + K
Sbjct: 128 DR---------EVTFLEASRFAQENELM----FLETSALTGEDVEEAFVQCARKILNK 172
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 35 GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94
GK+ L I + F DY PT+ D+Y +DN+ + + DTAGQE++ +R
Sbjct: 30 GKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 95 TDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAA 152
D FL+ +S+ +S+E++ + +K P+ILV K DL K
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRK-------- 140
Query: 153 EVDLVSTSQGKKMRRKIKAAEYLECSAK---LNEGLDQVFIAAVRSAVKKQ 200
V+ QGK+M K Y+E SAK LN +D+ F VR +++Q
Sbjct: 141 ----VTRDQGKEMATKYNIP-YIETSAKDPPLN--VDKTFHDLVR-VIRQQ 183
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 35 GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94
GK+ L I + F DY PT+ D+Y +DN+ + + DTAGQE++ +R
Sbjct: 25 GKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 95 TDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAA 152
D FL+ +S+ +S+E++ + +K P+ILV K DL K
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRK-------- 135
Query: 153 EVDLVSTSQGKKMRRKIKAAEYLECSAK---LNEGLDQVFIAAVRSAVKKQ 200
V+ QGK+M K Y+E SAK LN +D+ F VR +++Q
Sbjct: 136 ----VTRDQGKEMATKYNIP-YIETSAKDPPLN--VDKTFHDLVR-VIRQQ 178
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFD-NYPDTITVDN-KTYDVTLWDTAGQE 82
K+ +GDG VGKT + + +F +Y TV N+P T D +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLRS 141
L+ + Y +L F + S + +N L++W E + + PI++ K D+++
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQN-LARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
K I KK EV K K EY E SAK F+ R + D
Sbjct: 132 RQK-ISKKLVMEV------------LKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPD 178
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ +G+ VGKT ++ + F +Y T+ D T+ +D + LWDTAGQE
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADL 139
+ L P ++ ++ + I + S+EN +KW ++ + K V I LVG K DL
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNERGKDVIIALVGNKTDL 118
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 35 GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94
GK+ L I + F +Y PT+ D+Y +DN+ + + DTAGQE++ +R
Sbjct: 30 GKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 95 TDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAA 152
D FL+ +S+ +S+E++ + +K P+ILV K DL K
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRK-------- 140
Query: 153 EVDLVSTSQGKKMRRKIKAAEYLECSAK---LNEGLDQVFIAAVRSAVKKQ 200
V+ QGK+M K Y+E SAK LN +D+ F VR +++Q
Sbjct: 141 ----VTRDQGKEMATKYNIP-YIETSAKDPPLN--VDKTFHDLVR-VIRQQ 183
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 35 GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94
GK+ L I + F +Y PT+ D+Y +DN+ + + DTAGQE++ +R
Sbjct: 30 GKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 95 TDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAA 152
D FL+ +S+ +S+E++ + +K P+ILV K DL K
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRK-------- 140
Query: 153 EVDLVSTSQGKKMRRKIKAAEYLECSAK---LNEGLDQVFIAAVRSAVKKQ 200
V+ QGK+M K Y+E SAK LN +D+ F VR +++Q
Sbjct: 141 ----VTRDQGKEMATKYNIP-YIETSAKDPPLN--VDKTFHDLVR-VIRQQ 183
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 35 GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94
GK+ L + F Y PT+ D Y I VD+ + + DTAG E + +R + N
Sbjct: 15 GKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 95 TDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADL 139
F+L +S+ + S+++I + +K + KVP+ILVG K DL
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDL 120
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 15/169 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGD VGKTC++ F T+ D T+ + K + +WDTAGQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
+ + Y + + +L + I SS+ ++ W +++ + + +L+G K+DL
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDL-- 146
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
+E+ VS ++ + + +E SAK + +++ F+
Sbjct: 147 ----------SELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL 185
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 20/176 (11%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVP-TVFDNYPDTITVDNKTYDVTLWDTAGQE 82
KV VG+ VGK+ L T + + + P D Y I VD + + ++D Q
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 83 DYER-LRPMSYPNTDCFLLCFSIGSTSSYENI---LSKWYPELKHHCPKVPIILVGTKAD 138
D LR D FL+ FS+ S+ + L + HH +P+ILVG K+D
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSD 141
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
L A VS +G+ + + + +++E SA L+ ++F AVR
Sbjct: 142 L------------ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVR 184
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 23/184 (12%)
Query: 25 KVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL---WDTA 79
+V +G+ VGK+ L + + +D D Y T+ VD ++ + L W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKA 137
G+ ++ L D +L+ +SI +S+E S+ +L+ +PIILVG K+
Sbjct: 68 GENEW--LHDHXMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 124
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
DL + VS S+G+ + +++E SA + + ++F VR
Sbjct: 125 DLVRXRE------------VSVSEGRAX-AVVFDCKFIETSAAVQHNVKELFEGIVRQVR 171
Query: 198 KKQD 201
++D
Sbjct: 172 LRRD 175
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 23/184 (12%)
Query: 25 KVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL---WDTA 79
+V +G+ VGK+ L + + +D D Y T+ VD ++ + L W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKA 137
G+ ++ L D +L+ +SI +S+E S+ +L+ +PIILVG K+
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 124
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
DL + VS S+G+ + +++E SA + + ++F VR
Sbjct: 125 DLVRXRE------------VSVSEGRAX-AVVFDXKFIETSAAVQHNVKELFEGIVRQVR 171
Query: 198 KKQD 201
++D
Sbjct: 172 LRRD 175
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 12 DKDVKSKSVHKALKVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNK 69
D + S+S + +V +G+ VGK+ L + + +D D Y T+ VD +
Sbjct: 26 DSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGE 85
Query: 70 TYDVTL---WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--H 124
+ + L W+ G+ ++ L D +L+ +SI +S+E S+ +L+
Sbjct: 86 SATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQ 142
Query: 125 CPKVPIILVGTKADL-RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183
+PIILVG K+DL R ++ + +A V + +++E SA +
Sbjct: 143 TEDIPIILVGNKSDLVRCREVSVSEGRACAV--------------VFDCKFIETSAAVQH 188
Query: 184 GLDQVFIAAVRSAVKKQD 201
+ ++F VR ++D
Sbjct: 189 NVKELFEGIVRQVRLRRD 206
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITV-DNKTYDVTLWDTA 79
+ LK+ +GDG GKT L + F Y T+ D + IT+ N + +WD
Sbjct: 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIG 64
Query: 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK---HHCPKVPII-LVGT 135
GQ ++ LL + I + S+EN L WY +K P++ LVG
Sbjct: 65 GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFEN-LEDWYTVVKKVSEESETQPLVALVGN 123
Query: 136 KADL 139
K DL
Sbjct: 124 KIDL 127
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 24/178 (13%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF---DNYPDTITVDNKTYDVTLWDTAG 80
KV VG+ VGK+ L T D+ + D Y I VD + + ++D
Sbjct: 3 FKVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60
Query: 81 QEDYER-LRPMSYPNTDCFLLCFSIGSTSSYENI---LSKWYPELKHHCPKVPIILVGTK 136
Q D L+ D FL+ FS+ S+ + L + HH +P+ILVG K
Sbjct: 61 QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNK 118
Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+DL + VS +G+ + + + +++E SA L+ ++F AVR
Sbjct: 119 SDLARSRE------------VSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVR 163
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 25/178 (14%)
Query: 25 KVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL---WDTA 79
+V +G+ VGK+ L + + +D D Y T+ VD ++ + L W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKA 137
G+ ++ L D +L+ +SI +S+E S+ +L+ +PIILVG K+
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEK-ASELRIQLRRARQTEDIPIILVGNKS 124
Query: 138 DL-RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
DL R ++ + +A V + +++E SA + + ++F VR
Sbjct: 125 DLVRCREVSVSEGRACAV--------------VFDCKFIETSAAVQHNVKELFEGIVR 168
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 26/192 (13%)
Query: 15 VKSKSVHKALKVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNKTYD 72
V +SV+K L + G VGK+ L + E+ + +D +I VD +
Sbjct: 2 VSDESVYKVLLLGAPG---VGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEAS 55
Query: 73 VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPI 130
+ ++D Q+ L D +++ +S+ S+E S+ +L+ VPI
Sbjct: 56 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEK-ASELRVQLRRARQTDDVPI 114
Query: 131 ILVGTKADL-RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
ILVG K+DL RS ++D+ +A V + +++E SA L+ + +F
Sbjct: 115 ILVGNKSDLVRSREVSVDEGRACAV--------------VFDCKFIETSAALHHNVQALF 160
Query: 190 IAAVRSAVKKQD 201
VR ++D
Sbjct: 161 EGVVRQIRLRRD 172
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 20/176 (11%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDY-VPTVFDNYPDTITVDNKTYDVTLWDTAGQE 82
KV +G+ VGK+ L T + + + D Y I VD + + ++D Q
Sbjct: 13 FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 83 DYER-LRPMSYPNTDCFLLCFSIGSTSSYENI---LSKWYPELKHHCPKVPIILVGTKAD 138
D L+ D FL+ FS+ S+ + L + HH +P+ILVG K+D
Sbjct: 73 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSD 130
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
L + VS +G+ + + + +++E SA L+ ++F AVR
Sbjct: 131 LARSRE------------VSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVR 173
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
+V +GD VGKT L + + D Y T+TVD + + + DT E
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 85 ERLRPMSYPNTDC------FLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTK 136
++ S+ C +++ +SI S+E+ S+ +L+ H VPIILVG K
Sbjct: 66 DK----SWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNK 120
Query: 137 ADL-RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
ADL R ++++ +A V + +++E SA L + ++F
Sbjct: 121 ADLARCREVSVEEGRACAV--------------VFDCKFIETSATLQHNVAELF 160
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 23/190 (12%)
Query: 17 SKSVHKALKVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVT 74
S S KV +G VGK+ L + E+ + +D +I VD + +
Sbjct: 1 SMSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLM 57
Query: 75 LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIIL 132
++D Q+ L D +++ +S+ S+E S+ +L+ VPIIL
Sbjct: 58 VYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIIL 116
Query: 133 VGTKADL-RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
VG K+DL RS ++D+ +A V + +++E SA L+ + +F
Sbjct: 117 VGNKSDLVRSREVSVDEGRACAV--------------VFDCKFIETSAALHHNVQALFEG 162
Query: 192 AVRSAVKKQD 201
VR ++D
Sbjct: 163 VVRQIRLRRD 172
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 75 LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVG 134
+WDTAGQE Y + P+ Y C ++ F I ++++ + W +LK + IILV
Sbjct: 97 IWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDR-AKTWVNQLKISSNYI-IILVA 154
Query: 135 TKAD 138
K D
Sbjct: 155 NKID 158
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 25 KVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE 82
KV +G VGK+ L + E+ + +D +I VD + + ++D Q+
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQD 60
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADL- 139
L D +++ +S+ S+E S+ +L+ VPIILVG K+DL
Sbjct: 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
RS ++D+ +A V + +++E SA L+ + +F VR
Sbjct: 120 RSREVSVDEGRACAV--------------VFDCKFIETSAALHHNVQALFEGVVR 160
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 25 KVTTVGDGMVGKTCLLITHTENK-----FPTDYVPTVFDNYPDTITVDNKTYDVTL--WD 77
K+ VG+ GKT LL + K + V ++P I D + D+ L WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIR-DKRKRDLVLNVWD 60
Query: 78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137
AG+E++ P +L + + + + W +K P+ILVGT
Sbjct: 61 FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHL 120
Query: 138 DLRSENK 144
D+ E +
Sbjct: 121 DVSDEKQ 127
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 25 KVTTVGDGMVGKTCLLITHTENK-----FPTDYVPTVFDNYPDTITVDNKTYDVTL--WD 77
K+ VG+ GKT LL + K + V ++P I D + D+ L WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIR-DKRKRDLVLNVWD 62
Query: 78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137
AG+E++ P +L + + + + W +K P+ILVGT
Sbjct: 63 FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHL 122
Query: 138 DLRSENK 144
D+ E +
Sbjct: 123 DVSDEKQ 129
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 13 KDVKSKSVHKAL--KVTTVGDGMVGKTCL--LITHTENKFPTDYVPTV-FDNYPDTITVD 67
K+VK + L KV VG+ VGK+ L + T +KF DY T + +T+
Sbjct: 8 KEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIP 67
Query: 68 NKTYDVTLW--DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC 125
+ T V L+ DTAG + Y+ + +L F + S S+E+ W+ LK
Sbjct: 68 DTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSAR 126
Query: 126 P--KVPI--ILVGTKADLRSENKTI 146
P + P+ +LV K DL + +
Sbjct: 127 PDRERPLRAVLVANKTDLPPQRHQV 151
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 19/168 (11%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
LKV VG+ GK+ L+ + + + P + I VD ++Y + + D G +
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPE 79
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL--KHHCPKVPIILVGTKADLRS 141
L+ ++ D + FS+ S++ + + ++ L + +VP++LVGT+
Sbjct: 80 ---LQFAAW--VDAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQ----- 128
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
D AA ++ S+ +K+ +K Y E A +++VF
Sbjct: 129 -----DAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVF 171
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 32/187 (17%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE- 82
+ + +G GK+ L + +F ++Y P + D Y TVD++ + + DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 83 --DYERLRPMSYPN-TDCFLLCFSI------GSTSSYENILSKWYPELKHHCPKVPIILV 133
+ ER Y N FL+ +S+ S+SSY +L+ E + +P +L+
Sbjct: 82 PRNCER-----YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQR---SIPALLL 133
Query: 134 GTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN-EGLDQVFIAA 192
G K D+ A+ V+ ++G + + + E SA L+ E + VF A
Sbjct: 134 GNKLDM------------AQYRQVTKAEGVALAGRFGCL-FFEVSACLDFEHVQHVFHEA 180
Query: 193 VRSAVKK 199
VR A ++
Sbjct: 181 VREARRE 187
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 19/149 (12%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
+++T VG GKT + +F D +PTV N +T N T + +WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM-RKVTKGNVT--IKIWDIGGQPR 79
Query: 84 YERLRPMSYPNTDCFLLCFSI-------GSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
+ + + + S + N+L K P+L+ +P++++G K
Sbjct: 80 FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK--PQLQG----IPVLVLGNK 133
Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKM 165
DL + +D+K+ E +S Q +++
Sbjct: 134 RDLPN---ALDEKQLIEKMNLSAIQDREI 159
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
+++T VG GKT + +F D +PTV N IT N T + LWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM-RKITKGNVT--IKLWDIGGQPR 79
Query: 84 YERLRPMSYPNTDCFLLCFSI-------GSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
+ + + S + N+L K P+L+ +P++++G K
Sbjct: 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQG----IPVLVLGNK 133
Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKM 165
DL +D+K+ E +S Q +++
Sbjct: 134 RDLPG---ALDEKELIEKMNLSAIQDREI 159
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
+++T VG GKT + +F D +PTV N IT N T + LWD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM-RKITKGNVT--IKLWDIGGQPR 88
Query: 84 YERLRPMSYPNTDCFLLCFSI-------GSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
+ + + S + N+L K P+L+ +P++++G K
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQG----IPVLVLGNK 142
Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKM 165
DL +D+K+ E +S Q +++
Sbjct: 143 RDLPG---ALDEKELIEKMNLSAIQDREI 168
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 15/144 (10%)
Query: 20 VH-KALKVTTVGDGMVGKTCLLITHTENKF-----PTDYVPTVFDNYPDTITVDN----K 69
VH + +KV +GDGM GKT LL F T + V P+ ++N K
Sbjct: 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELK 96
Query: 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP 129
WD GQE + ++L + S+ W ++ + K P
Sbjct: 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKH----YWLRHIEKYGGKSP 152
Query: 130 IILVGTKADLRSENKTIDKKKAAE 153
+I+V K D + + I++KK E
Sbjct: 153 VIVVMNKID-ENPSYNIEQKKINE 175
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
K +++ VG GKT +L + T +PT+ N TV+ K T+WD GQ
Sbjct: 16 KEMRILMVGLDAAGKTSILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQ 71
Query: 82 EDYERLRPMSYPNTDCFLLC 101
+ L Y NT +
Sbjct: 72 DKIRPLWRHYYQNTQAIIFV 91
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 33.1 bits (74), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 5/124 (4%)
Query: 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWD 77
+ H+ KV VG GKT +L + N+ PT+ N + I ++N + +WD
Sbjct: 17 RGSHQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE-IVINNTRF--LMWD 72
Query: 78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTK 136
GQE Y NT+ ++ + Y L H K +++ K
Sbjct: 73 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK 132
Query: 137 ADLR 140
D++
Sbjct: 133 QDVK 136
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
K +++ VG GKT +L + T +PT+ N TV+ + T+WD GQ
Sbjct: 16 KDVRILMVGLDAAGKTTILYKVKLGEVVTT-IPTIGFNVE---TVEFRNISFTVWDVGGQ 71
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILV-GTKADL 139
+ L Y NTD + ++ + + + K IILV K DL
Sbjct: 72 DKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDL 130
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
L++ +GD GK+ L+ + T + Y + VD +T+ V + + AG D
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 66
Query: 84 YERLRPMSYPN-TDCFLLCFSIGSTSSYENILSKWYPELK----HHCPKVPIILVGTKAD 138
+ + D + FS+ +S++ + S+ + +L + + LVGT+
Sbjct: 67 AK------FSGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQ-- 117
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
D+ A+ +V ++ + + +K Y E A +D+VF
Sbjct: 118 --------DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVF 160
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG 80
H+ KV VG GKT +L + N+ PT+ N + I ++N + +WD G
Sbjct: 14 HQEHKVIIVGLDNAGKTTILYQFSMNE-VVHTSPTIGSNVEE-IVINNTRF--LMWDIGG 69
Query: 81 QEDYERLRPMSYPNTD 96
QE Y NT+
Sbjct: 70 QESLRSSWNTYYTNTE 85
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG 80
H+ KV VG GKT +L + N+ PT+ N + I ++N + +WD G
Sbjct: 14 HQEHKVIIVGLDNAGKTTILYQFSMNE-VVHTSPTIGSNVEE-IVINNTRF--LMWDIGG 69
Query: 81 QEDYERLRPMSYPNTD 96
QE Y NT+
Sbjct: 70 QESLRSSWNTYYTNTE 85
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 16/133 (12%)
Query: 16 KSKSVHKALKVTTVGDGMVGKTCLL--ITHTENKFPTDYVPTVFDNYPDTITVDNKTYDV 73
K + + LKV VG VGK+ LL + ++ TD T D + V V
Sbjct: 217 KGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPV 274
Query: 74 TLWDTAG----QEDYERL---RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP 126
+ DTAG + E++ R NT L+ +I + + + + Y ++KH
Sbjct: 275 QVLDTAGIRETSDQVEKIGVERSRQAANT-ADLVLLTIDAATGWTTGDQEIYEQVKHR-- 331
Query: 127 KVPIILVGTKADL 139
P+ILV K DL
Sbjct: 332 --PLILVMNKIDL 342
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG 80
+K +++ VG GKT +L + T +PT+ N TV K T+WD G
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVE---TVQYKNISFTVWDVGG 70
Query: 81 QEDYERLRPMSYPNTDCFLLC 101
Q+ L Y NT+ +
Sbjct: 71 QDRIRSLWRHYYRNTEGVIFV 91
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG 80
+K +++ VG GKT +L + T +PT+ N TV K T+WD G
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVE---TVQYKNISFTVWDVGG 70
Query: 81 QEDYERLRPMSYPNTDCFLLC 101
Q+ L Y NT+ +
Sbjct: 71 QDRIRSLWRHYYRNTEGVIFV 91
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
K +++ VG GKT +L + T +PT+ N TV+ K T+WD GQ
Sbjct: 19 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQ 74
Query: 82 EDYERLRPMSYPNTDCFLLC 101
+ L + NT +
Sbjct: 75 DKIRPLWRHYFQNTQGLIFV 94
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
K +++ VG GKT +L + T +PT+ N TV+ K T+WD GQ
Sbjct: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQ 70
Query: 82 EDYERLRPMSYPNTDCFLLC 101
+ L + NT +
Sbjct: 71 DKIRPLWRHYFQNTQGLIFV 90
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
K +++ VG GKT +L + T +PT+ N TV+ K T+WD GQ
Sbjct: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQ 71
Query: 82 EDYERLRPMSYPNTDCFLLC 101
+ L + NT +
Sbjct: 72 DKIRPLWRHYFQNTQGLIFV 91
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
K +++ VG GKT +L + T +PT+ N TV+ K T+WD GQ
Sbjct: 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQ 219
Query: 82 EDYERLRPMSYPNTDCFLL 100
+ L + NT +
Sbjct: 220 DKIRPLWRHYFQNTQGLIF 238
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV VG GKT +L N+ PT+ N + I V N + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGSNVEE-IVVKNTHF--LMWDIGGQESL 73
Query: 85 ERLRPMSYPNTDCFLL 100
Y NT+ +L
Sbjct: 74 RSSWNTYYSNTEFIIL 89
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
K +++ VG GKT +L + T +PT+ N TV+ K T+WD GQ
Sbjct: 16 KQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNICFTVWDVGGQ 71
Query: 82 EDYERLRPM---SYPNTDCFLLC 101
+R+RP+ + NT +
Sbjct: 72 ---DRIRPLWKHYFQNTQGLIFV 91
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
L++ +GD GK+ L+ + T + Y + VD +T+ V + + AG D
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 66
Query: 84 YERLRPMSYPN-TDCFLLCFSIGSTSSYENILSKWYPELKHHCPK----VPIILVGTKAD 138
+ + D + FS+ +S++ + S+ + +L + + + LVGT+
Sbjct: 67 AK------FSGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQ-- 117
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
D+ A+ +V ++ + + +K Y E A +D+VF
Sbjct: 118 --------DRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVF 160
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV VG GKT +L + N+ PT+ N + I ++N + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE-IVINNTRF--LMWDIGGQESL 78
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLR 140
Y NT+ ++ + Y L H K +++ K D++
Sbjct: 79 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 13/133 (9%)
Query: 20 VHKALKVTTVGDGMVGKTCLL--ITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWD 77
+ + +KV G GK+ LL + E TD T D + I +D + D
Sbjct: 4 LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHII--D 61
Query: 78 TAG----QEDYERL---RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVP 129
TAG ++ ER+ R +L G+T+ + W PE P K+P
Sbjct: 62 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW-PEFIARLPAKLP 120
Query: 130 IILVGTKADLRSE 142
I +V KAD+ E
Sbjct: 121 ITVVRNKADITGE 133
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
+++ VG GKT +L + T +PT+ N TV K T+WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVE---TVQYKNISFTVWDVGGQDR 56
Query: 84 YERLRPMSYPNTDCFLLC 101
L Y NT+ +
Sbjct: 57 IRSLWRHYYRNTEGVIFV 74
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 23 ALKVTTVGDGMVGKTCLL--ITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG 80
+KV G GK+ LL + E TD T D + I +D + DTAG
Sbjct: 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHII--DTAG 61
Query: 81 ----QEDYERL---RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIIL 132
++ ER+ R +L G+T+ + W PE P K+PI +
Sbjct: 62 LREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW-PEFIARLPAKLPITV 120
Query: 133 VGTKADLRSE 142
V KAD+ E
Sbjct: 121 VRNKADITGE 130
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
+++ VG GKT +L + T +PT+ N TV+ K T+WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQDK 56
Query: 84 YERLRPMSYPNTDCFLLC 101
L + NT +
Sbjct: 57 IRPLWRHYFQNTQGLIFV 74
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
K +++ VG GKT +L + T +PT+ N TV+ K T+WD GQ
Sbjct: 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNICFTVWDVGGQ 83
Query: 82 EDYERLRPMSYPNTDCFLLC 101
+ L + NT +
Sbjct: 84 DKIRPLWRHYFQNTQGLIFV 103
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTI-TVDNKTYDVT 74
K K + L++ +G GKT +L KF + V T+ I T++++ + +
Sbjct: 11 KMKQKERELRLLMLGLDNAGKTTIL-----KKFNGEDVDTISPTLGFNIKTLEHRGFKLN 65
Query: 75 LWDTAGQEDYERLRPMSYPNTDCFL 99
+WD GQ+ + +TD +
Sbjct: 66 IWDVGGQKSLRSYWRNYFESTDGLI 90
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTI-TVDNKTYDVT 74
K K + L++ +G GKT +L KF + V T+ I T++++ + +
Sbjct: 11 KMKQKERELRLLMLGLDNAGKTTIL-----KKFNGEDVDTISPTLGFNIKTLEHRGFKLN 65
Query: 75 LWDTAGQEDYERLRPMSYPNTDCFL 99
+WD GQ+ + +TD +
Sbjct: 66 IWDVGGQKSLRSYWRNYFESTDGLI 90
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTI-TVDNKTYDVT 74
K K + L++ +G GKT +L KF + + T+ I T++++ + +
Sbjct: 9 KMKQKERELRLLMLGLDNAGKTTIL-----KKFNGEDIDTISPTLGFNIKTLEHRGFKLN 63
Query: 75 LWDTAGQEDYERLRPMSYPNTDCFL 99
+WD GQ+ + +TD +
Sbjct: 64 IWDVGGQKSLRSYWRNYFESTDGLI 88
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG 80
+K +++ +G GKT +L + T +PTV N +T+T N ++V WD G
Sbjct: 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV-ETVTYKNVKFNV--WDVGG 375
Query: 81 QEDYERLRPM 90
Q +++RP+
Sbjct: 376 Q---DKIRPL 382
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+,
And Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG 80
+K +++ +G GKT +L + T +PTV N +T+T N ++V WD G
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV-ETVTYKNVKFNV--WDVGG 66
Query: 81 QEDYERLRPM 90
Q +++RP+
Sbjct: 67 Q---DKIRPL 73
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG 80
+K +++ +G GKT +L + T +PTV N +T+T N ++V WD G
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV-ETVTYKNVKFNV--WDVGG 65
Query: 81 QEDYERLRPM 90
Q +++RP+
Sbjct: 66 Q---DKIRPL 72
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 117 WYPELKHHCPKVPIILVGTKADLRSENKTIDK-------------KKAAEVDLVSTSQGK 163
W P L ++LVG KADL ++ DK K +V L+S ++G+
Sbjct: 86 WLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWXRYSAKQLGLKPEDVFLISAAKGQ 145
Query: 164 KMRRKIKAAEY 174
+ A EY
Sbjct: 146 GIAELADAIEY 156
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE 82
++++ VG GKT +L + T +PT+ N TV+ K T+WD G +
Sbjct: 2 SMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGLD 57
Query: 83 DYERLRPMSYPNTDCFLLC 101
L + NT +
Sbjct: 58 KIRPLWRHYFQNTQGLIFV 76
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +++ +G GKT +L + T +PT+ N +T+T N + V WD GQ
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNV-ETVTYKNLKFQV--WDLGGQ 56
Query: 82 EDYERLRPMSYPNTDCFL 99
Y NTD +
Sbjct: 57 TSIRPYWRCYYSNTDAVI 74
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 124 HCPKVPIILVGTKADLRSENKTI------DKKKAAEVDLVSTSQ--GKKMRRKIKAAEYL 175
H K+P++L+G ++LR + + +VST+Q GK++ + +Y+
Sbjct: 119 HQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYI 178
Query: 176 ECSAKLNEG 184
+ A +N G
Sbjct: 179 QTDAIINYG 187
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 124 HCPKVPIILVGTKADLRSENKTI------DKKKAAEVDLVSTSQ--GKKMRRKIKAAEYL 175
H K+P++L+G ++LR + + +VST+Q GK++ + +Y+
Sbjct: 119 HQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYI 178
Query: 176 ECSAKLNEG 184
+ A +N G
Sbjct: 179 QTDAIINYG 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,169,733
Number of Sequences: 62578
Number of extensions: 254077
Number of successful extensions: 1248
Number of sequences better than 100.0: 341
Number of HSP's better than 100.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 341
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)