Query psy15714
Match_columns 205
No_of_seqs 137 out of 1672
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 19:35:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 5.7E-42 1.2E-46 237.6 17.4 169 19-200 5-175 (205)
2 KOG0092|consensus 100.0 1.2E-40 2.6E-45 230.1 16.2 166 21-200 3-170 (200)
3 cd01875 RhoG RhoG subfamily. 100.0 2.4E-39 5.1E-44 234.7 21.1 178 22-199 2-179 (191)
4 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.1E-39 8.8E-44 231.2 21.0 179 20-198 2-181 (182)
5 KOG0078|consensus 100.0 1.6E-39 3.6E-44 228.5 17.3 169 18-200 7-177 (207)
6 KOG0098|consensus 100.0 1.1E-39 2.3E-44 223.9 15.5 169 20-202 3-173 (216)
7 cd04131 Rnd Rnd subfamily. Th 100.0 1.6E-38 3.5E-43 227.6 20.8 175 23-197 1-176 (178)
8 cd04121 Rab40 Rab40 subfamily. 100.0 1.4E-38 3E-43 229.5 20.2 170 20-203 3-173 (189)
9 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 4.1E-38 8.9E-43 232.7 21.4 181 19-199 9-190 (232)
10 cd04133 Rop_like Rop subfamily 100.0 4.4E-38 9.6E-43 224.5 20.5 172 24-197 2-173 (176)
11 KOG0080|consensus 100.0 6.8E-39 1.5E-43 214.8 14.4 165 20-198 8-175 (209)
12 cd01874 Cdc42 Cdc42 subfamily. 100.0 8.8E-38 1.9E-42 223.5 20.5 173 24-196 2-174 (175)
13 KOG0394|consensus 100.0 2E-38 4.4E-43 217.2 16.1 174 17-201 3-182 (210)
14 KOG0094|consensus 100.0 2.6E-38 5.7E-43 218.7 15.5 168 18-199 17-187 (221)
15 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3E-37 6.6E-42 227.0 21.0 177 24-200 2-179 (222)
16 cd04120 Rab12 Rab12 subfamily. 100.0 2.5E-37 5.4E-42 224.9 19.3 163 24-199 1-165 (202)
17 cd04134 Rho3 Rho3 subfamily. 100.0 7.4E-37 1.6E-41 221.4 21.3 176 25-200 2-177 (189)
18 cd01871 Rac1_like Rac1-like su 100.0 6.9E-37 1.5E-41 218.7 20.2 172 24-195 2-173 (174)
19 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.3E-37 9.4E-42 219.4 19.0 166 23-202 2-169 (172)
20 KOG0086|consensus 100.0 1.5E-37 3.2E-42 206.9 12.9 172 16-201 2-175 (214)
21 KOG0087|consensus 100.0 1.2E-36 2.6E-41 213.2 15.7 172 16-201 7-180 (222)
22 smart00174 RHO Rho (Ras homolo 100.0 7.9E-36 1.7E-40 213.3 19.7 173 26-198 1-173 (174)
23 KOG0093|consensus 100.0 2.5E-36 5.4E-41 199.6 14.6 171 16-200 14-186 (193)
24 KOG0079|consensus 100.0 7.5E-37 1.6E-41 202.3 11.8 164 21-198 6-170 (198)
25 cd04135 Tc10 TC10 subfamily. 100.0 2.6E-35 5.6E-40 210.7 20.7 173 24-196 1-173 (174)
26 cd04122 Rab14 Rab14 subfamily. 100.0 2.1E-35 4.7E-40 209.6 18.8 162 23-198 2-165 (166)
27 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3E-35 6.6E-40 215.0 18.8 163 24-199 1-170 (201)
28 cd04132 Rho4_like Rho4-like su 100.0 4E-35 8.7E-40 212.1 19.2 169 24-200 1-170 (187)
29 cd04110 Rab35 Rab35 subfamily. 100.0 6.1E-35 1.3E-39 213.0 20.2 163 22-198 5-168 (199)
30 KOG0095|consensus 100.0 4.3E-36 9.3E-41 199.2 12.2 168 19-200 3-172 (213)
31 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.1E-34 2.4E-39 207.3 20.5 171 24-194 1-171 (173)
32 KOG0091|consensus 100.0 9.9E-36 2.2E-40 200.1 13.8 168 21-202 6-178 (213)
33 cd04144 Ras2 Ras2 subfamily. 100.0 4.6E-35 1E-39 212.2 17.7 161 25-199 1-165 (190)
34 PTZ00369 Ras-like protein; Pro 100.0 1E-34 2.2E-39 210.3 19.3 165 21-199 3-169 (189)
35 cd04136 Rap_like Rap-like subf 100.0 7.4E-35 1.6E-39 206.1 18.2 160 23-196 1-162 (163)
36 cd04175 Rap1 Rap1 subgroup. T 100.0 7.9E-35 1.7E-39 206.3 17.8 161 23-197 1-163 (164)
37 cd04117 Rab15 Rab15 subfamily. 100.0 1.1E-34 2.4E-39 204.9 17.8 158 24-195 1-160 (161)
38 cd01867 Rab8_Rab10_Rab13_like 100.0 1.7E-34 3.7E-39 205.2 18.7 163 22-198 2-166 (167)
39 KOG0393|consensus 100.0 2.1E-35 4.5E-40 208.6 13.8 180 21-200 2-182 (198)
40 cd04112 Rab26 Rab26 subfamily. 100.0 2.3E-34 4.9E-39 208.7 19.4 162 24-199 1-165 (191)
41 cd01865 Rab3 Rab3 subfamily. 100.0 2.4E-34 5.3E-39 204.0 19.0 161 24-198 2-164 (165)
42 cd01870 RhoA_like RhoA-like su 100.0 6.3E-34 1.4E-38 203.7 21.1 173 24-196 2-174 (175)
43 cd04127 Rab27A Rab27a subfamil 100.0 2.3E-34 5E-39 206.9 18.6 164 22-199 3-179 (180)
44 PLN03071 GTP-binding nuclear p 100.0 3.7E-34 8.1E-39 211.4 19.1 163 21-199 11-174 (219)
45 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.5E-34 9.7E-39 202.8 18.7 162 23-198 2-165 (166)
46 KOG0088|consensus 100.0 3.9E-35 8.4E-40 196.4 12.0 167 20-200 10-178 (218)
47 PF00071 Ras: Ras family; Int 100.0 3.7E-34 8.1E-39 202.4 17.4 159 25-197 1-161 (162)
48 cd04176 Rap2 Rap2 subgroup. T 100.0 5.1E-34 1.1E-38 201.9 18.0 160 23-196 1-162 (163)
49 cd01873 RhoBTB RhoBTB subfamil 100.0 9.7E-34 2.1E-38 205.3 19.5 170 23-195 2-194 (195)
50 cd04126 Rab20 Rab20 subfamily. 100.0 6.7E-34 1.4E-38 209.1 18.8 171 24-198 1-191 (220)
51 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 7.2E-34 1.6E-38 202.4 18.3 166 25-205 2-170 (170)
52 smart00173 RAS Ras subfamily o 100.0 6.4E-34 1.4E-38 201.5 18.0 161 24-198 1-163 (164)
53 cd04128 Spg1 Spg1p. Spg1p (se 100.0 8.9E-34 1.9E-38 203.8 18.7 165 24-198 1-167 (182)
54 cd04138 H_N_K_Ras_like H-Ras/N 100.0 9E-34 1.9E-38 200.1 18.3 159 23-196 1-161 (162)
55 cd04140 ARHI_like ARHI subfami 100.0 1.1E-33 2.3E-38 200.7 18.3 158 24-195 2-163 (165)
56 cd04129 Rho2 Rho2 subfamily. 100.0 2.5E-33 5.4E-38 202.6 20.5 180 24-205 2-185 (187)
57 cd01864 Rab19 Rab19 subfamily. 100.0 1.2E-33 2.7E-38 200.4 18.2 161 22-195 2-164 (165)
58 cd04106 Rab23_lke Rab23-like s 100.0 7.5E-34 1.6E-38 200.8 16.9 158 24-195 1-161 (162)
59 cd04125 RabA_like RabA-like su 100.0 1.7E-33 3.8E-38 203.7 19.1 162 24-199 1-164 (188)
60 cd04119 RJL RJL (RabJ-Like) su 100.0 1.2E-33 2.7E-38 200.6 17.9 160 24-197 1-167 (168)
61 cd04111 Rab39 Rab39 subfamily. 100.0 1.5E-33 3.2E-38 207.2 18.5 164 23-200 2-169 (211)
62 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.8E-33 4E-38 199.1 18.4 160 23-196 2-163 (164)
63 cd04116 Rab9 Rab9 subfamily. 100.0 2.8E-33 6.1E-38 199.4 18.6 161 21-195 3-169 (170)
64 cd00877 Ran Ran (Ras-related n 100.0 3.5E-33 7.6E-38 198.2 18.8 159 24-198 1-160 (166)
65 PLN03110 Rab GTPase; Provision 100.0 3.8E-33 8.3E-38 205.7 19.4 165 20-198 9-175 (216)
66 cd04109 Rab28 Rab28 subfamily. 100.0 2.1E-33 4.6E-38 207.1 17.9 161 24-198 1-167 (215)
67 cd04103 Centaurin_gamma Centau 100.0 3.1E-33 6.6E-38 196.7 17.7 155 24-195 1-157 (158)
68 cd01866 Rab2 Rab2 subfamily. 100.0 6E-33 1.3E-37 197.4 19.1 163 22-198 3-167 (168)
69 cd04118 Rab24 Rab24 subfamily. 100.0 7E-33 1.5E-37 201.3 19.7 166 24-199 1-168 (193)
70 cd04113 Rab4 Rab4 subfamily. 100.0 3.3E-33 7.3E-38 197.3 17.1 158 24-195 1-160 (161)
71 cd04177 RSR1 RSR1 subgroup. R 100.0 8E-33 1.7E-37 196.8 19.1 162 23-197 1-164 (168)
72 cd01868 Rab11_like Rab11-like. 100.0 5.9E-33 1.3E-37 196.8 18.2 160 23-196 3-164 (165)
73 PLN03108 Rab family protein; P 100.0 9E-33 2E-37 203.0 19.5 166 21-200 4-171 (210)
74 smart00176 RAN Ran (Ras-relate 100.0 4.3E-33 9.4E-38 202.4 17.4 155 29-199 1-156 (200)
75 cd04124 RabL2 RabL2 subfamily. 100.0 9.9E-33 2.1E-37 195.0 18.6 159 24-199 1-160 (161)
76 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.5E-32 3.2E-37 195.7 18.4 160 23-196 2-168 (170)
77 cd04142 RRP22 RRP22 subfamily. 100.0 2.3E-32 5E-37 198.8 19.5 164 24-201 1-178 (198)
78 cd04143 Rhes_like Rhes_like su 100.0 1.4E-32 3.1E-37 205.8 18.7 162 24-198 1-172 (247)
79 cd00157 Rho Rho (Ras homology) 100.0 4E-32 8.6E-37 193.5 19.4 170 24-194 1-170 (171)
80 cd04146 RERG_RasL11_like RERG/ 100.0 1.6E-32 3.4E-37 194.7 16.8 159 25-197 1-164 (165)
81 KOG0081|consensus 100.0 1.2E-34 2.7E-39 194.1 5.1 171 18-202 4-186 (219)
82 cd01892 Miro2 Miro2 subfamily. 100.0 2.7E-32 5.9E-37 194.1 17.5 164 21-198 2-167 (169)
83 smart00175 RAB Rab subfamily o 100.0 4.2E-32 9.1E-37 192.1 18.1 161 24-198 1-163 (164)
84 cd01862 Rab7 Rab7 subfamily. 100.0 6.6E-32 1.4E-36 192.6 18.8 164 24-200 1-170 (172)
85 cd01860 Rab5_related Rab5-rela 100.0 7E-32 1.5E-36 190.8 18.2 160 23-196 1-162 (163)
86 cd04101 RabL4 RabL4 (Rab-like4 100.0 5.8E-32 1.3E-36 191.5 17.1 159 24-196 1-163 (164)
87 PLN03118 Rab family protein; P 100.0 1.5E-31 3.4E-36 196.8 19.8 166 20-199 11-179 (211)
88 cd01861 Rab6 Rab6 subfamily. 100.0 1.1E-31 2.4E-36 189.4 17.5 158 24-195 1-160 (161)
89 KOG0097|consensus 100.0 4.2E-32 9.2E-37 178.8 13.7 170 18-201 6-177 (215)
90 cd04148 RGK RGK subfamily. Th 100.0 2.5E-31 5.3E-36 196.6 19.1 160 24-199 1-165 (221)
91 KOG0395|consensus 100.0 1.6E-31 3.5E-36 192.8 16.9 164 22-199 2-167 (196)
92 cd01863 Rab18 Rab18 subfamily. 100.0 3.7E-31 7.9E-36 186.9 18.4 157 24-195 1-160 (161)
93 cd04123 Rab21 Rab21 subfamily. 100.0 3.6E-31 7.9E-36 186.8 18.1 159 24-196 1-161 (162)
94 cd04139 RalA_RalB RalA/RalB su 100.0 7.3E-31 1.6E-35 185.7 18.5 161 24-198 1-163 (164)
95 PLN00223 ADP-ribosylation fact 100.0 5.7E-31 1.2E-35 189.2 16.9 161 21-199 15-180 (181)
96 KOG0083|consensus 100.0 5E-33 1.1E-37 181.3 5.3 158 27-198 1-161 (192)
97 cd01893 Miro1 Miro1 subfamily. 100.0 9.8E-31 2.1E-35 185.7 17.5 164 24-198 1-165 (166)
98 cd04149 Arf6 Arf6 subfamily. 100.0 2.4E-31 5.2E-36 189.1 14.3 156 21-194 7-167 (168)
99 cd04114 Rab30 Rab30 subfamily. 100.0 2.5E-30 5.5E-35 183.9 18.6 162 21-196 5-168 (169)
100 cd04137 RheB Rheb (Ras Homolog 100.0 4.3E-30 9.3E-35 184.7 18.2 164 24-200 2-166 (180)
101 cd00876 Ras Ras family. The R 100.0 2.4E-30 5.3E-35 182.2 16.4 157 25-195 1-159 (160)
102 PTZ00133 ADP-ribosylation fact 100.0 3.6E-30 7.9E-35 185.2 17.1 161 21-200 15-181 (182)
103 smart00177 ARF ARF-like small 100.0 3.3E-30 7.2E-35 184.4 16.8 158 21-197 11-174 (175)
104 cd04158 ARD1 ARD1 subfamily. 100.0 5.1E-30 1.1E-34 182.5 16.7 157 25-200 1-164 (169)
105 cd04147 Ras_dva Ras-dva subfam 100.0 8E-30 1.7E-34 185.9 18.1 160 25-197 1-163 (198)
106 cd00154 Rab Rab family. Rab G 100.0 5.7E-30 1.2E-34 179.7 16.6 157 24-194 1-159 (159)
107 cd04150 Arf1_5_like Arf1-Arf5- 100.0 5.5E-30 1.2E-34 180.5 16.4 153 24-194 1-158 (159)
108 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 5.7E-31 1.2E-35 186.4 11.3 156 26-194 2-163 (164)
109 PTZ00132 GTP-binding nuclear p 100.0 2.3E-29 4.9E-34 185.8 19.2 167 18-200 4-171 (215)
110 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.7E-29 3.7E-34 182.0 16.7 164 22-201 2-174 (183)
111 cd04154 Arl2 Arl2 subfamily. 100.0 7.5E-29 1.6E-33 177.1 16.2 155 21-194 12-172 (173)
112 PF00025 Arf: ADP-ribosylation 100.0 1.1E-28 2.3E-33 176.4 15.0 164 20-196 11-175 (175)
113 cd04161 Arl2l1_Arl13_like Arl2 100.0 5E-29 1.1E-33 177.0 12.3 157 25-194 1-166 (167)
114 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.4E-28 7.3E-33 176.7 16.7 150 24-183 1-176 (202)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 4.9E-28 1.1E-32 173.0 16.6 154 22-194 14-173 (174)
116 cd04157 Arl6 Arl6 subfamily. 100.0 1.5E-28 3.3E-33 173.5 13.1 152 25-194 1-161 (162)
117 cd00879 Sar1 Sar1 subfamily. 100.0 6.1E-28 1.3E-32 174.9 16.2 157 21-195 17-189 (190)
118 KOG4252|consensus 100.0 2.9E-30 6.2E-35 176.5 3.6 174 14-201 11-185 (246)
119 PLN00023 GTP-binding protein; 100.0 1.2E-27 2.6E-32 182.0 16.3 151 16-173 14-191 (334)
120 cd04151 Arl1 Arl1 subfamily. 100.0 7.8E-28 1.7E-32 169.4 14.3 151 25-194 1-157 (158)
121 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.4E-27 3E-32 168.4 15.0 151 25-194 1-159 (160)
122 smart00178 SAR Sar1p-like memb 100.0 2.7E-27 5.8E-32 170.6 15.9 168 21-195 15-183 (184)
123 cd04160 Arfrp1 Arfrp1 subfamil 100.0 3.5E-27 7.5E-32 167.5 15.6 152 25-194 1-166 (167)
124 KOG0070|consensus 100.0 2.5E-27 5.4E-32 163.7 12.9 163 19-199 13-180 (181)
125 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.3E-26 2.9E-31 163.1 16.0 151 25-194 1-157 (158)
126 KOG0073|consensus 99.9 1E-26 2.3E-31 156.8 14.5 166 20-198 13-179 (185)
127 PTZ00099 rab6; Provisional 99.9 2.5E-26 5.3E-31 164.0 16.3 139 46-198 3-143 (176)
128 cd04159 Arl10_like Arl10-like 99.9 7.4E-26 1.6E-30 158.8 15.8 156 26-194 2-158 (159)
129 COG1100 GTPase SAR1 and relate 99.9 3.4E-25 7.4E-30 163.9 17.2 176 23-199 5-187 (219)
130 cd04155 Arl3 Arl3 subfamily. 99.9 2.2E-25 4.8E-30 159.1 15.2 153 21-194 12-172 (173)
131 cd01897 NOG NOG1 is a nucleola 99.9 3.3E-25 7.2E-30 157.4 16.0 154 25-196 2-167 (168)
132 KOG0075|consensus 99.9 4.5E-27 9.7E-32 155.7 5.6 164 22-198 19-183 (186)
133 cd01890 LepA LepA subfamily. 99.9 2.4E-25 5.2E-30 159.7 14.6 154 25-196 2-176 (179)
134 TIGR00231 small_GTP small GTP- 99.9 9.9E-25 2.1E-29 152.8 16.0 157 23-193 1-160 (161)
135 TIGR02528 EutP ethanolamine ut 99.9 1.1E-25 2.4E-30 155.7 10.6 135 25-193 2-141 (142)
136 KOG0071|consensus 99.9 1.1E-25 2.4E-30 148.1 9.6 163 21-197 15-178 (180)
137 cd01898 Obg Obg subfamily. Th 99.9 1.4E-24 3.1E-29 154.4 14.5 156 25-195 2-169 (170)
138 cd04171 SelB SelB subfamily. 99.9 3.7E-24 8E-29 151.3 14.1 156 25-194 2-163 (164)
139 PRK12299 obgE GTPase CgtA; Rev 99.9 9E-24 2E-28 164.1 17.1 165 21-200 156-331 (335)
140 cd01878 HflX HflX subfamily. 99.9 7.4E-24 1.6E-28 155.2 13.5 153 21-195 39-203 (204)
141 PRK04213 GTP-binding protein; 99.9 2.7E-24 5.8E-29 157.2 10.5 158 20-200 6-195 (201)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.8E-23 3.9E-28 148.4 14.5 158 25-197 2-166 (168)
143 cd00882 Ras_like_GTPase Ras-li 99.9 5.7E-23 1.2E-27 142.6 14.8 153 28-193 1-156 (157)
144 PF08477 Miro: Miro-like prote 99.9 1.1E-23 2.5E-28 141.3 10.8 114 25-138 1-119 (119)
145 cd01894 EngA1 EngA1 subfamily. 99.9 2.3E-23 5.1E-28 146.1 12.8 146 27-195 1-156 (157)
146 TIGR00436 era GTP-binding prot 99.9 3.6E-23 7.8E-28 157.5 14.7 154 25-198 2-165 (270)
147 PRK03003 GTP-binding protein D 99.9 5.2E-23 1.1E-27 167.6 16.5 162 22-199 210-384 (472)
148 PRK15494 era GTPase Era; Provi 99.9 1.4E-22 2.9E-27 158.5 17.0 158 20-198 49-217 (339)
149 cd01879 FeoB Ferrous iron tran 99.9 1.4E-22 3E-27 142.4 15.0 147 28-196 1-156 (158)
150 cd01891 TypA_BipA TypA (tyrosi 99.9 4.3E-23 9.4E-28 150.0 12.6 147 25-187 4-172 (194)
151 KOG3883|consensus 99.9 1.9E-22 4.1E-27 134.8 14.2 170 20-203 6-181 (198)
152 KOG1673|consensus 99.9 1.3E-22 2.7E-27 135.9 13.4 173 16-198 13-187 (205)
153 TIGR02729 Obg_CgtA Obg family 99.9 1.6E-22 3.5E-27 157.0 15.9 161 20-196 154-328 (329)
154 KOG0072|consensus 99.9 8.4E-24 1.8E-28 139.8 6.9 165 21-199 16-181 (182)
155 cd00881 GTP_translation_factor 99.9 1.2E-22 2.7E-27 146.7 13.0 158 25-196 1-186 (189)
156 TIGR03594 GTPase_EngA ribosome 99.9 4.6E-22 1E-26 161.0 17.1 164 21-199 170-346 (429)
157 cd01881 Obg_like The Obg-like 99.9 2.1E-22 4.6E-27 143.9 13.2 152 28-195 1-175 (176)
158 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.3E-22 7.2E-27 160.7 15.7 152 21-199 201-362 (442)
159 TIGR03156 GTP_HflX GTP-binding 99.9 2.1E-22 4.6E-27 157.7 13.9 152 22-195 188-350 (351)
160 cd04163 Era Era subfamily. Er 99.9 3.1E-22 6.6E-27 141.4 13.5 158 22-195 2-167 (168)
161 PRK03003 GTP-binding protein D 99.9 3.2E-22 6.9E-27 163.1 14.3 154 22-198 37-200 (472)
162 cd04105 SR_beta Signal recogni 99.9 3E-22 6.4E-27 146.3 12.4 120 25-144 2-126 (203)
163 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.2E-21 2.6E-26 137.3 15.0 145 24-196 2-156 (157)
164 TIGR00487 IF-2 translation ini 99.9 1.5E-21 3.2E-26 161.4 17.3 160 20-195 84-248 (587)
165 PRK05291 trmE tRNA modificatio 99.9 5E-22 1.1E-26 160.5 14.2 148 22-198 214-371 (449)
166 PRK00454 engB GTP-binding prot 99.9 8.6E-22 1.9E-26 143.3 14.1 166 15-197 16-194 (196)
167 PF02421 FeoB_N: Ferrous iron 99.9 3.2E-22 7E-27 138.3 10.8 147 24-192 1-156 (156)
168 TIGR01393 lepA GTP-binding pro 99.9 1.5E-21 3.3E-26 162.1 15.9 156 25-198 5-181 (595)
169 cd01895 EngA2 EngA2 subfamily. 99.9 4.1E-21 8.8E-26 136.7 15.8 155 23-195 2-173 (174)
170 PRK00089 era GTPase Era; Revie 99.9 2.1E-21 4.6E-26 149.6 15.2 160 21-198 3-172 (292)
171 PRK15467 ethanolamine utilizat 99.9 9.4E-22 2E-26 138.2 11.9 142 25-200 3-150 (158)
172 cd01889 SelB_euk SelB subfamil 99.9 1.5E-21 3.3E-26 141.6 13.3 160 24-198 1-187 (192)
173 TIGR03598 GTPase_YsxC ribosome 99.9 1.5E-21 3.2E-26 140.1 11.6 151 19-186 14-179 (179)
174 PRK00093 GTP-binding protein D 99.9 5.1E-21 1.1E-25 155.1 15.2 149 24-195 2-160 (435)
175 PRK12297 obgE GTPase CgtA; Rev 99.9 1.2E-20 2.6E-25 150.2 17.0 157 24-199 159-329 (424)
176 KOG0096|consensus 99.9 6.5E-22 1.4E-26 136.8 8.0 163 21-199 8-171 (216)
177 PRK09518 bifunctional cytidyla 99.9 8.4E-21 1.8E-25 161.4 15.9 162 22-199 449-623 (712)
178 CHL00189 infB translation init 99.9 6.5E-21 1.4E-25 159.9 14.9 162 20-196 241-409 (742)
179 PRK11058 GTPase HflX; Provisio 99.9 2.1E-20 4.6E-25 149.6 16.4 156 24-198 198-363 (426)
180 PRK12296 obgE GTPase CgtA; Rev 99.9 1.5E-20 3.2E-25 151.6 15.5 164 19-199 155-342 (500)
181 TIGR00475 selB selenocysteine- 99.9 1.1E-20 2.4E-25 156.8 15.1 159 24-198 1-167 (581)
182 TIGR03594 GTPase_EngA ribosome 99.9 1.1E-20 2.4E-25 153.0 14.7 151 25-198 1-161 (429)
183 KOG0074|consensus 99.9 3.2E-21 7E-26 127.2 9.4 164 20-196 14-178 (185)
184 PRK05306 infB translation init 99.9 2.3E-20 5.1E-25 157.9 17.1 163 19-195 286-450 (787)
185 PF00009 GTP_EFTU: Elongation 99.9 1E-20 2.2E-25 136.8 12.0 161 22-196 2-186 (188)
186 PRK00093 GTP-binding protein D 99.9 3.6E-20 7.8E-25 150.2 16.1 162 21-198 171-345 (435)
187 cd01888 eIF2_gamma eIF2-gamma 99.9 1.9E-20 4.2E-25 136.9 13.1 116 71-198 83-200 (203)
188 PRK12298 obgE GTPase CgtA; Rev 99.8 8.1E-20 1.8E-24 144.7 16.3 162 23-199 159-335 (390)
189 KOG1707|consensus 99.8 5.8E-21 1.3E-25 152.2 8.4 169 17-198 3-176 (625)
190 TIGR00491 aIF-2 translation in 99.8 1.5E-19 3.2E-24 149.5 16.4 170 22-195 3-214 (590)
191 KOG0076|consensus 99.8 8.3E-21 1.8E-25 129.6 7.2 163 20-199 14-189 (197)
192 cd01896 DRG The developmentall 99.8 2.8E-19 6.1E-24 133.1 16.2 150 25-196 2-225 (233)
193 KOG1423|consensus 99.8 4.8E-20 1E-24 136.9 11.8 180 16-198 65-272 (379)
194 TIGR00437 feoB ferrous iron tr 99.8 7.7E-20 1.7E-24 152.0 14.0 145 30-196 1-154 (591)
195 cd00880 Era_like Era (E. coli 99.8 8.5E-20 1.8E-24 127.8 12.1 153 28-195 1-162 (163)
196 COG1159 Era GTPase [General fu 99.8 1.5E-19 3.2E-24 134.5 13.8 162 20-199 3-174 (298)
197 COG2229 Predicted GTPase [Gene 99.8 4.4E-19 9.6E-24 122.7 14.7 159 18-195 5-176 (187)
198 PRK09518 bifunctional cytidyla 99.8 1.9E-19 4E-24 153.2 15.1 155 21-198 273-437 (712)
199 PRK05433 GTP-binding protein L 99.8 3.2E-19 6.9E-24 148.4 15.9 158 24-199 8-186 (600)
200 cd04167 Snu114p Snu114p subfam 99.8 1.5E-19 3.2E-24 133.2 11.4 158 25-186 2-192 (213)
201 KOG4423|consensus 99.8 9.5E-22 2.1E-26 135.6 -0.2 170 19-200 21-197 (229)
202 PRK09554 feoB ferrous iron tra 99.8 6.8E-19 1.5E-23 149.6 16.7 153 22-196 2-167 (772)
203 cd01876 YihA_EngB The YihA (En 99.8 7.3E-19 1.6E-23 124.4 12.9 154 25-195 1-169 (170)
204 PF10662 PduV-EutP: Ethanolami 99.8 3.4E-19 7.3E-24 120.6 10.0 136 25-193 3-142 (143)
205 PRK12317 elongation factor 1-a 99.8 7.4E-19 1.6E-23 141.9 13.9 161 20-189 3-197 (425)
206 COG1160 Predicted GTPases [Gen 99.8 8.5E-19 1.8E-23 137.3 13.6 150 24-196 4-164 (444)
207 TIGR00483 EF-1_alpha translati 99.8 5.3E-19 1.2E-23 142.7 12.8 161 20-189 4-199 (426)
208 TIGR03680 eif2g_arch translati 99.8 7.1E-19 1.5E-23 140.9 12.1 164 21-197 2-196 (406)
209 PRK10218 GTP-binding protein; 99.8 2E-18 4.4E-23 143.2 14.5 160 23-198 5-196 (607)
210 cd04168 TetM_like Tet(M)-like 99.8 2.8E-18 6E-23 127.9 13.9 168 25-196 1-234 (237)
211 PRK04004 translation initiatio 99.8 3.9E-18 8.4E-23 141.5 15.9 169 20-195 3-216 (586)
212 PRK10512 selenocysteinyl-tRNA- 99.8 2.4E-18 5.3E-23 143.4 14.6 158 25-198 2-167 (614)
213 KOG0077|consensus 99.8 1.3E-19 2.8E-24 122.9 5.3 172 21-196 18-192 (193)
214 COG1160 Predicted GTPases [Gen 99.8 1.1E-17 2.3E-22 131.3 16.6 164 21-198 176-352 (444)
215 cd04165 GTPBP1_like GTPBP1-lik 99.8 6.8E-18 1.5E-22 124.8 14.7 164 25-194 1-220 (224)
216 TIGR01394 TypA_BipA GTP-bindin 99.8 1.9E-18 4.1E-23 143.4 13.1 158 25-198 3-192 (594)
217 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.9E-18 6.3E-23 125.8 11.9 152 25-187 1-184 (208)
218 cd04104 p47_IIGP_like p47 (47- 99.8 5.6E-18 1.2E-22 123.3 13.2 173 23-201 1-188 (197)
219 PRK04000 translation initiatio 99.8 2.9E-18 6.3E-23 137.4 12.6 165 20-198 6-202 (411)
220 COG0486 ThdF Predicted GTPase 99.8 7.3E-18 1.6E-22 132.5 14.0 154 21-199 215-378 (454)
221 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 3.9E-18 8.4E-23 125.6 10.0 168 25-200 1-179 (232)
222 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.6E-17 7.9E-22 118.5 14.4 150 23-185 2-171 (195)
223 cd01883 EF1_alpha Eukaryotic e 99.7 2.3E-17 5.1E-22 121.9 10.4 154 25-186 1-194 (219)
224 KOG1489|consensus 99.7 1.7E-16 3.7E-21 118.7 14.2 156 22-194 195-364 (366)
225 PRK12736 elongation factor Tu; 99.7 1.1E-16 2.4E-21 127.9 13.7 165 20-197 9-201 (394)
226 cd01885 EF2 EF2 (for archaea a 99.7 1.2E-16 2.6E-21 117.7 12.7 112 25-140 2-138 (222)
227 COG0532 InfB Translation initi 99.7 1.5E-16 3.2E-21 126.8 13.9 165 21-197 3-170 (509)
228 PRK12735 elongation factor Tu; 99.7 1.7E-16 3.8E-21 126.8 14.2 165 19-196 8-202 (396)
229 COG1163 DRG Predicted GTPase [ 99.7 1E-15 2.3E-20 115.0 16.9 162 14-197 54-289 (365)
230 TIGR00485 EF-Tu translation el 99.7 1.9E-16 4E-21 126.7 13.7 152 19-183 8-179 (394)
231 COG0370 FeoB Fe2+ transport sy 99.7 1.6E-16 3.4E-21 130.0 12.4 155 22-198 2-165 (653)
232 COG0218 Predicted GTPase [Gene 99.7 6.6E-16 1.4E-20 109.3 13.7 163 19-198 20-198 (200)
233 PF09439 SRPRB: Signal recogni 99.7 8E-18 1.7E-22 118.9 4.0 121 23-145 3-130 (181)
234 cd04170 EF-G_bact Elongation f 99.7 6E-16 1.3E-20 117.8 14.6 114 25-142 1-131 (268)
235 cd01850 CDC_Septin CDC/Septin. 99.7 9.5E-16 2.1E-20 116.7 14.3 143 22-179 3-184 (276)
236 COG3596 Predicted GTPase [Gene 99.7 2E-16 4.3E-21 116.5 9.1 177 18-198 34-223 (296)
237 CHL00071 tufA elongation facto 99.7 1E-15 2.2E-20 122.9 14.0 153 19-184 8-180 (409)
238 cd04169 RF3 RF3 subfamily. Pe 99.7 8.3E-16 1.8E-20 116.5 12.6 115 25-143 4-139 (267)
239 COG1084 Predicted GTPase [Gene 99.7 1.4E-15 3E-20 114.6 13.1 160 22-199 167-338 (346)
240 PRK00741 prfC peptide chain re 99.7 1.6E-15 3.6E-20 124.5 14.3 119 21-143 8-147 (526)
241 PRK13351 elongation factor G; 99.7 8.7E-16 1.9E-20 130.8 13.0 118 21-142 6-140 (687)
242 COG0536 Obg Predicted GTPase [ 99.7 4.9E-15 1.1E-19 112.2 14.1 162 24-199 160-335 (369)
243 cd01886 EF-G Elongation factor 99.7 2.2E-15 4.8E-20 114.3 12.1 114 25-142 1-131 (270)
244 KOG0090|consensus 99.7 7.7E-16 1.7E-20 109.1 8.7 167 24-195 39-237 (238)
245 PRK05124 cysN sulfate adenylyl 99.6 1.2E-15 2.5E-20 124.3 10.9 159 19-188 23-216 (474)
246 PRK00049 elongation factor Tu; 99.6 7.2E-15 1.6E-19 117.5 14.8 164 20-196 9-202 (396)
247 TIGR02034 CysN sulfate adenyly 99.6 2.3E-15 5E-20 120.7 11.7 153 24-187 1-187 (406)
248 COG2262 HflX GTPases [General 99.6 9.8E-15 2.1E-19 113.2 14.0 160 19-199 188-358 (411)
249 TIGR00503 prfC peptide chain r 99.6 9.3E-15 2E-19 120.1 14.2 117 21-141 9-146 (527)
250 PTZ00141 elongation factor 1- 99.6 7.6E-15 1.7E-19 118.7 13.0 159 20-187 4-203 (446)
251 PLN03126 Elongation factor Tu; 99.6 8.6E-15 1.9E-19 118.9 13.2 153 19-184 77-249 (478)
252 cd01899 Ygr210 Ygr210 subfamil 99.6 1.5E-14 3.3E-19 111.8 14.0 80 26-105 1-110 (318)
253 PF01926 MMR_HSR1: 50S ribosom 99.6 8E-15 1.7E-19 97.8 10.6 104 25-136 1-116 (116)
254 TIGR00484 EF-G translation elo 99.6 3.4E-14 7.3E-19 121.0 17.0 115 22-142 9-142 (689)
255 KOG0462|consensus 99.6 1.1E-14 2.3E-19 116.1 12.8 162 21-198 58-236 (650)
256 PLN00043 elongation factor 1-a 99.6 5E-15 1.1E-19 119.7 11.1 158 20-187 4-203 (447)
257 PTZ00327 eukaryotic translatio 99.6 7.7E-15 1.7E-19 118.4 12.1 166 19-197 30-233 (460)
258 PLN03127 Elongation factor Tu; 99.6 3.1E-14 6.8E-19 115.0 15.4 166 18-196 56-251 (447)
259 PRK05506 bifunctional sulfate 99.6 1.7E-14 3.6E-19 121.8 12.4 158 19-187 20-211 (632)
260 KOG1145|consensus 99.6 4.7E-14 1E-18 112.5 12.7 164 19-196 149-315 (683)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 3E-13 6.6E-18 98.4 16.1 163 24-198 1-185 (196)
262 KOG1532|consensus 99.5 4.7E-14 1E-18 103.9 10.0 180 17-198 13-265 (366)
263 PRK13768 GTPase; Provisional 99.5 3.8E-14 8.2E-19 106.8 9.4 125 72-196 98-246 (253)
264 PRK09866 hypothetical protein; 99.5 3.2E-13 7E-18 110.8 15.1 110 71-194 230-350 (741)
265 COG4917 EutP Ethanolamine util 99.5 2.4E-14 5.1E-19 93.1 6.7 137 25-194 3-143 (148)
266 PRK12739 elongation factor G; 99.5 3.5E-13 7.6E-18 114.8 15.4 116 21-142 6-140 (691)
267 KOG1191|consensus 99.5 9E-14 2E-18 109.7 10.4 166 20-199 265-452 (531)
268 COG2895 CysN GTPases - Sulfate 99.5 1.7E-13 3.6E-18 104.2 11.3 156 20-186 3-192 (431)
269 PRK00007 elongation factor G; 99.5 4.9E-13 1.1E-17 113.9 15.3 117 21-143 8-143 (693)
270 cd00066 G-alpha G protein alph 99.5 6.2E-13 1.4E-17 103.3 14.3 131 70-200 160-314 (317)
271 KOG1486|consensus 99.5 1.4E-12 3E-17 95.1 14.5 164 12-197 51-288 (364)
272 KOG1144|consensus 99.5 1.4E-13 3.1E-18 113.0 10.2 177 18-198 470-688 (1064)
273 PRK14845 translation initiatio 99.5 6.5E-13 1.4E-17 115.6 14.5 156 34-196 472-672 (1049)
274 PRK12740 elongation factor G; 99.5 2.3E-13 5E-18 115.8 11.4 111 29-143 1-128 (668)
275 COG0481 LepA Membrane GTPase L 99.5 1.7E-13 3.7E-18 107.8 9.4 159 24-198 10-187 (603)
276 smart00010 small_GTPase Small 99.5 3.9E-13 8.4E-18 90.4 10.1 113 24-186 1-115 (124)
277 PF03029 ATP_bind_1: Conserved 99.5 2.2E-14 4.7E-19 106.9 3.7 125 72-196 92-236 (238)
278 KOG1707|consensus 99.5 2E-12 4.3E-17 104.0 14.8 166 16-198 418-584 (625)
279 PRK09602 translation-associate 99.5 1.3E-12 2.8E-17 104.1 13.6 82 24-105 2-113 (396)
280 TIGR00157 ribosome small subun 99.5 4E-13 8.7E-18 100.7 10.1 96 82-194 24-120 (245)
281 smart00275 G_alpha G protein a 99.4 1.9E-12 4.1E-17 101.5 12.1 130 70-200 183-337 (342)
282 COG5256 TEF1 Translation elong 99.4 8.2E-13 1.8E-17 102.6 9.8 159 20-187 4-201 (428)
283 TIGR00101 ureG urease accessor 99.4 1.1E-12 2.4E-17 95.4 9.8 102 71-197 92-196 (199)
284 TIGR00490 aEF-2 translation el 99.4 8.8E-13 1.9E-17 112.7 10.7 118 21-142 17-153 (720)
285 KOG1490|consensus 99.4 6.2E-13 1.3E-17 105.3 8.3 161 23-198 168-342 (620)
286 KOG3905|consensus 99.4 1.1E-11 2.5E-16 93.5 12.6 170 23-197 52-290 (473)
287 KOG0705|consensus 99.4 1.7E-12 3.7E-17 103.7 8.0 165 20-201 27-193 (749)
288 PF05049 IIGP: Interferon-indu 99.4 5.2E-12 1.1E-16 98.8 10.0 174 20-201 32-222 (376)
289 TIGR00991 3a0901s02IAP34 GTP-b 99.4 7.8E-12 1.7E-16 95.4 10.6 120 20-142 35-168 (313)
290 KOG3887|consensus 99.4 8.5E-12 1.8E-16 90.5 10.1 170 24-199 28-204 (347)
291 cd01853 Toc34_like Toc34-like 99.3 1E-11 2.2E-16 93.2 10.0 122 19-144 27-166 (249)
292 PF05783 DLIC: Dynein light in 99.3 2.4E-11 5.1E-16 98.3 12.7 172 22-198 24-265 (472)
293 PRK09435 membrane ATPase/prote 99.3 1.3E-11 2.9E-16 95.7 10.5 107 70-197 148-260 (332)
294 cd01882 BMS1 Bms1. Bms1 is an 99.3 3.4E-11 7.3E-16 89.4 12.1 145 20-184 36-183 (225)
295 TIGR02836 spore_IV_A stage IV 99.3 5.7E-11 1.2E-15 93.2 13.1 156 21-193 15-233 (492)
296 PF04548 AIG1: AIG1 family; I 99.3 6.9E-11 1.5E-15 87.0 12.9 165 24-199 1-188 (212)
297 KOG0461|consensus 99.3 7.6E-11 1.6E-15 89.8 12.2 168 21-201 5-197 (522)
298 TIGR00073 hypB hydrogenase acc 99.3 6.1E-11 1.3E-15 87.0 11.3 154 19-195 18-205 (207)
299 KOG3886|consensus 99.3 1.4E-11 3E-16 88.8 7.3 119 24-144 5-133 (295)
300 PRK07560 elongation factor EF- 99.3 4.8E-11 1E-15 102.4 11.8 116 22-141 19-153 (731)
301 PF00735 Septin: Septin; Inte 99.3 1.2E-10 2.6E-15 88.8 11.9 119 22-144 3-159 (281)
302 COG1217 TypA Predicted membran 99.2 1.5E-10 3.3E-15 91.3 11.9 159 24-198 6-196 (603)
303 PTZ00416 elongation factor 2; 99.2 4.1E-11 8.8E-16 104.0 8.6 116 21-140 17-157 (836)
304 PLN00116 translation elongatio 99.2 4.4E-11 9.5E-16 103.9 8.7 117 20-140 16-163 (843)
305 PTZ00258 GTP-binding protein; 99.2 2.1E-10 4.6E-15 90.7 11.8 86 20-105 18-126 (390)
306 KOG0082|consensus 99.2 4.3E-10 9.3E-15 87.0 12.9 133 70-203 194-350 (354)
307 KOG1143|consensus 99.2 2.1E-10 4.6E-15 88.3 10.6 170 16-189 160-380 (591)
308 PF00350 Dynamin_N: Dynamin fa 99.2 1.5E-10 3.1E-15 82.1 7.3 63 72-137 102-168 (168)
309 KOG1487|consensus 99.1 3.7E-10 8E-15 83.0 8.9 154 21-196 57-280 (358)
310 PRK09601 GTP-binding protein Y 99.1 2.4E-09 5.1E-14 83.9 13.3 82 24-105 3-107 (364)
311 TIGR00750 lao LAO/AO transport 99.1 1.5E-09 3.3E-14 84.0 12.0 111 70-197 126-238 (300)
312 COG5257 GCD11 Translation init 99.1 4.9E-10 1.1E-14 84.7 8.3 168 21-200 8-205 (415)
313 cd01855 YqeH YqeH. YqeH is an 99.1 8E-10 1.7E-14 80.0 8.5 95 84-197 24-125 (190)
314 KOG0458|consensus 99.1 3.1E-09 6.8E-14 86.0 12.2 158 19-186 173-371 (603)
315 PF03308 ArgK: ArgK protein; 99.0 1.1E-09 2.3E-14 81.2 7.9 100 71-196 122-229 (266)
316 cd01859 MJ1464 MJ1464. This f 99.0 7.3E-10 1.6E-14 77.6 6.8 95 85-198 3-97 (156)
317 PRK00098 GTPase RsgA; Reviewed 99.0 1.6E-09 3.6E-14 83.6 9.2 87 91-193 77-163 (298)
318 smart00053 DYNc Dynamin, GTPas 99.0 2.4E-09 5.2E-14 79.7 9.5 70 71-143 125-208 (240)
319 COG1703 ArgK Putative periplas 99.0 4.7E-09 1E-13 78.9 10.8 108 70-198 143-255 (323)
320 cd01900 YchF YchF subfamily. 99.0 2.7E-09 5.9E-14 80.9 9.5 80 26-105 1-103 (274)
321 COG0378 HypB Ni2+-binding GTPa 99.0 1E-08 2.2E-13 72.6 11.3 102 71-196 97-200 (202)
322 COG3276 SelB Selenocysteine-sp 99.0 4.4E-09 9.4E-14 82.8 10.2 154 25-197 2-162 (447)
323 COG5019 CDC3 Septin family pro 99.0 6.6E-09 1.4E-13 80.1 10.6 123 19-145 19-180 (373)
324 PRK10463 hydrogenase nickel in 99.0 5.6E-09 1.2E-13 79.3 9.7 57 127-195 230-287 (290)
325 COG0480 FusA Translation elong 98.9 4.1E-09 8.9E-14 89.1 8.9 121 20-144 7-145 (697)
326 TIGR03597 GTPase_YqeH ribosome 98.9 4.3E-09 9.2E-14 83.4 8.5 96 81-195 50-151 (360)
327 COG4108 PrfC Peptide chain rel 98.9 9.5E-09 2.1E-13 80.8 10.0 120 22-145 11-151 (528)
328 cd01854 YjeQ_engC YjeQ/EngC. 98.9 6E-09 1.3E-13 80.1 8.8 88 89-194 73-161 (287)
329 KOG1547|consensus 98.9 8.7E-09 1.9E-13 75.1 9.0 119 19-140 42-197 (336)
330 KOG0468|consensus 98.9 4.5E-09 9.7E-14 86.3 8.3 117 19-140 124-262 (971)
331 PRK12289 GTPase RsgA; Reviewed 98.9 9.2E-09 2E-13 80.8 9.4 90 87-194 82-172 (352)
332 TIGR00993 3a0901s04IAP86 chlor 98.9 8.9E-09 1.9E-13 85.4 9.5 118 21-142 116-251 (763)
333 COG0012 Predicted GTPase, prob 98.9 2.8E-08 6.1E-13 77.1 11.4 83 23-105 2-108 (372)
334 KOG0463|consensus 98.9 4.5E-09 9.8E-14 81.3 6.8 169 16-189 126-350 (641)
335 KOG2655|consensus 98.9 6.9E-08 1.5E-12 75.0 12.6 125 16-144 14-175 (366)
336 PRK12288 GTPase RsgA; Reviewed 98.8 2.7E-08 5.8E-13 78.2 9.7 88 92-194 118-205 (347)
337 COG0050 TufB GTPases - transla 98.8 5.4E-08 1.2E-12 73.0 10.4 163 19-196 8-200 (394)
338 COG5258 GTPBP1 GTPase [General 98.8 4.5E-08 9.8E-13 76.0 9.8 170 19-192 113-334 (527)
339 cd01858 NGP_1 NGP-1. Autoanti 98.8 3.6E-08 7.8E-13 69.1 7.7 90 91-196 5-94 (157)
340 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 2.2E-08 4.8E-13 68.9 6.4 53 25-81 85-138 (141)
341 KOG2486|consensus 98.7 1E-08 2.2E-13 76.3 3.8 165 20-195 133-314 (320)
342 cd01849 YlqF_related_GTPase Yl 98.7 1.6E-07 3.4E-12 65.8 8.0 82 96-196 1-84 (155)
343 COG1618 Predicted nucleotide k 98.7 9.7E-07 2.1E-11 60.8 11.3 113 21-139 3-142 (179)
344 KOG0410|consensus 98.6 4.7E-08 1E-12 74.3 5.3 150 21-197 176-341 (410)
345 PF09547 Spore_IV_A: Stage IV 98.6 2E-06 4.2E-11 68.1 13.9 155 22-193 16-233 (492)
346 COG5192 BMS1 GTP-binding prote 98.6 7.4E-07 1.6E-11 72.6 11.1 116 17-143 63-179 (1077)
347 cd04178 Nucleostemin_like Nucl 98.6 1.9E-07 4.2E-12 66.3 6.5 56 21-80 115-171 (172)
348 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.7E-07 3.6E-12 65.8 6.1 55 22-80 101-156 (157)
349 PRK13796 GTPase YqeH; Provisio 98.6 3.8E-07 8.2E-12 72.5 8.7 94 83-195 58-157 (365)
350 KOG1491|consensus 98.5 9E-07 2E-11 67.8 9.8 87 19-105 16-125 (391)
351 KOG1954|consensus 98.5 5.3E-07 1.1E-11 69.8 8.1 117 24-143 59-227 (532)
352 cd01859 MJ1464 MJ1464. This f 98.5 3.5E-07 7.6E-12 64.0 6.5 55 22-80 100-155 (156)
353 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3.8E-07 8.3E-12 62.7 6.4 77 91-184 8-84 (141)
354 cd01856 YlqF YlqF. Proteins o 98.5 3.2E-07 6.9E-12 65.3 6.0 57 21-81 113-170 (171)
355 KOG0448|consensus 98.5 1.1E-06 2.5E-11 72.7 9.2 121 20-144 106-278 (749)
356 TIGR03596 GTPase_YlqF ribosome 98.5 5.2E-07 1.1E-11 69.1 6.9 57 21-81 116-173 (276)
357 cd01856 YlqF YlqF. Proteins o 98.5 8.1E-07 1.8E-11 63.2 7.5 88 88-196 13-100 (171)
358 TIGR03596 GTPase_YlqF ribosome 98.5 4.5E-07 9.8E-12 69.5 6.4 101 78-199 4-105 (276)
359 KOG0085|consensus 98.5 2.3E-07 4.9E-12 67.5 4.4 129 70-199 198-351 (359)
360 PF00503 G-alpha: G-protein al 98.4 2.8E-06 6.1E-11 68.3 10.2 126 71-196 236-389 (389)
361 KOG0460|consensus 98.4 2.1E-06 4.6E-11 65.9 8.8 152 17-180 48-218 (449)
362 PRK09563 rbgA GTPase YlqF; Rev 98.4 1E-06 2.2E-11 67.9 6.8 57 21-81 119-176 (287)
363 TIGR03348 VI_IcmF type VI secr 98.4 8.2E-06 1.8E-10 73.9 13.0 114 24-142 112-258 (1169)
364 cd01855 YqeH YqeH. YqeH is an 98.4 6.7E-07 1.5E-11 64.7 5.1 55 23-80 127-189 (190)
365 TIGR00092 GTP-binding protein 98.4 1.5E-06 3.3E-11 68.4 7.2 82 24-105 3-108 (368)
366 cd01849 YlqF_related_GTPase Yl 98.3 1.8E-06 3.9E-11 60.4 6.3 55 21-80 98-154 (155)
367 KOG0447|consensus 98.3 2.8E-05 6.2E-10 63.4 13.3 70 72-143 413-495 (980)
368 PRK01889 GTPase RsgA; Reviewed 98.3 5.5E-06 1.2E-10 65.7 8.6 85 91-193 109-193 (356)
369 cd03112 CobW_like The function 98.3 5E-06 1.1E-10 58.3 7.4 65 70-139 86-158 (158)
370 KOG1534|consensus 98.3 7E-06 1.5E-10 59.0 8.0 125 72-197 99-251 (273)
371 COG1161 Predicted GTPases [Gen 98.3 2.3E-06 5E-11 66.9 6.1 57 21-81 130-187 (322)
372 KOG0465|consensus 98.2 8.3E-06 1.8E-10 67.0 9.1 120 21-144 37-173 (721)
373 KOG3859|consensus 98.2 3.2E-06 7E-11 63.2 6.1 124 17-143 36-192 (406)
374 PRK09563 rbgA GTPase YlqF; Rev 98.2 8.6E-06 1.9E-10 62.8 8.2 102 77-199 6-108 (287)
375 KOG0464|consensus 98.1 3E-06 6.4E-11 66.8 4.5 118 22-143 36-170 (753)
376 PF03193 DUF258: Protein of un 98.1 3E-06 6.4E-11 59.2 3.9 24 24-47 36-59 (161)
377 PRK10416 signal recognition pa 98.1 9.1E-06 2E-10 63.4 6.7 95 70-189 196-302 (318)
378 PRK14974 cell division protein 98.1 9.5E-06 2.1E-10 63.6 6.8 96 71-191 223-324 (336)
379 PRK12288 GTPase RsgA; Reviewed 98.1 6.7E-06 1.5E-10 64.8 6.0 22 26-47 208-229 (347)
380 cd01851 GBP Guanylate-binding 98.1 2.1E-05 4.5E-10 58.4 7.7 88 21-108 5-105 (224)
381 PF06858 NOG1: Nucleolar GTP-b 98.1 2.1E-05 4.6E-10 44.5 5.7 45 93-138 12-58 (58)
382 PRK12289 GTPase RsgA; Reviewed 98.1 8.4E-06 1.8E-10 64.3 5.6 23 25-47 174-196 (352)
383 KOG0466|consensus 98.0 5.7E-06 1.2E-10 62.7 4.2 111 72-198 126-242 (466)
384 KOG0467|consensus 98.0 2E-05 4.3E-10 66.4 7.3 114 21-139 7-136 (887)
385 TIGR00157 ribosome small subun 98.0 1.3E-05 2.8E-10 60.3 5.8 24 24-47 121-144 (245)
386 TIGR00064 ftsY signal recognit 98.0 2.3E-05 5E-10 59.8 7.2 96 70-190 154-261 (272)
387 COG1162 Predicted GTPases [Gen 98.0 8.1E-05 1.8E-09 56.9 9.8 94 86-194 71-164 (301)
388 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.5E-05 3.1E-10 61.5 5.4 25 24-48 162-186 (287)
389 PRK13695 putative NTPase; Prov 98.0 0.00016 3.4E-09 51.6 10.4 22 24-45 1-22 (174)
390 TIGR03597 GTPase_YqeH ribosome 97.9 2.6E-05 5.6E-10 62.0 5.7 112 24-142 155-281 (360)
391 PF02492 cobW: CobW/HypB/UreG, 97.9 9.5E-06 2.1E-10 58.1 2.6 68 70-142 84-156 (178)
392 PRK00098 GTPase RsgA; Reviewed 97.9 3.3E-05 7.2E-10 59.9 5.6 24 24-47 165-188 (298)
393 KOG4273|consensus 97.8 0.00044 9.5E-09 51.3 10.9 168 24-195 5-220 (418)
394 PRK13796 GTPase YqeH; Provisio 97.8 2.9E-05 6.3E-10 61.9 5.3 23 24-46 161-183 (365)
395 TIGR01425 SRP54_euk signal rec 97.8 0.00012 2.6E-09 59.1 8.5 65 70-140 182-252 (429)
396 COG3640 CooC CO dehydrogenase 97.8 0.0001 2.2E-09 54.1 7.3 63 71-140 134-198 (255)
397 COG0523 Putative GTPases (G3E 97.8 0.00042 9.1E-09 54.1 10.4 45 94-143 116-161 (323)
398 COG3523 IcmF Type VI protein s 97.7 0.00027 5.9E-09 63.3 10.0 112 26-142 128-271 (1188)
399 cd03114 ArgK-like The function 97.7 0.00015 3.3E-09 50.3 6.5 58 70-138 91-148 (148)
400 PRK11537 putative GTP-binding 97.7 0.00043 9.3E-09 54.1 9.6 21 26-46 7-27 (318)
401 COG1162 Predicted GTPases [Gen 97.7 8.2E-05 1.8E-09 56.8 5.3 22 25-46 166-187 (301)
402 PRK12727 flagellar biosynthesi 97.7 0.00047 1E-08 57.0 10.0 23 23-45 350-372 (559)
403 PRK14722 flhF flagellar biosyn 97.6 0.00046 9.9E-09 54.9 9.1 23 23-45 137-159 (374)
404 KOG1533|consensus 97.6 0.00018 3.9E-09 52.8 5.6 120 70-192 96-248 (290)
405 KOG0459|consensus 97.6 6E-05 1.3E-09 59.3 3.4 167 17-189 73-278 (501)
406 PF13207 AAA_17: AAA domain; P 97.5 7.5E-05 1.6E-09 49.7 3.0 22 25-46 1-22 (121)
407 PRK08118 topology modulation p 97.5 8E-05 1.7E-09 52.7 3.2 22 25-46 3-24 (167)
408 COG0563 Adk Adenylate kinase a 97.5 7.9E-05 1.7E-09 53.3 3.0 23 24-46 1-23 (178)
409 cd03115 SRP The signal recogni 97.5 0.00013 2.8E-09 51.9 4.1 67 70-142 82-154 (173)
410 KOG2484|consensus 97.5 0.00016 3.4E-09 56.9 4.3 59 19-81 248-307 (435)
411 KOG0099|consensus 97.5 0.0004 8.6E-09 51.9 6.1 129 70-199 201-371 (379)
412 PRK07261 topology modulation p 97.5 0.00012 2.5E-09 52.1 3.2 22 24-45 1-22 (171)
413 cd02038 FleN-like FleN is a me 97.4 0.00052 1.1E-08 47.0 6.2 65 71-139 45-109 (139)
414 PF13555 AAA_29: P-loop contai 97.4 0.00016 3.4E-09 42.0 3.0 21 25-45 25-45 (62)
415 PRK14721 flhF flagellar biosyn 97.4 0.00096 2.1E-08 53.9 8.5 23 23-45 191-213 (420)
416 cd04178 Nucleostemin_like Nucl 97.4 0.00063 1.4E-08 48.4 6.7 45 96-142 1-45 (172)
417 PRK14738 gmk guanylate kinase; 97.4 0.0003 6.5E-09 51.6 5.1 26 21-46 11-36 (206)
418 TIGR00959 ffh signal recogniti 97.4 0.00071 1.5E-08 54.9 7.6 66 70-141 182-253 (428)
419 KOG1424|consensus 97.4 0.00026 5.7E-09 57.4 4.9 56 22-81 313-369 (562)
420 PF13671 AAA_33: AAA domain; P 97.4 0.00013 2.8E-09 50.0 2.8 20 26-45 2-21 (143)
421 COG0194 Gmk Guanylate kinase [ 97.4 0.00016 3.4E-09 51.4 3.2 24 24-47 5-28 (191)
422 PRK14737 gmk guanylate kinase; 97.4 0.00035 7.6E-09 50.3 4.7 23 24-46 5-27 (186)
423 PRK10867 signal recognition pa 97.4 0.00044 9.5E-09 56.2 5.6 65 70-141 183-254 (433)
424 cd01983 Fer4_NifH The Fer4_Nif 97.3 0.0013 2.9E-08 41.4 7.0 69 26-107 2-71 (99)
425 TIGR02475 CobW cobalamin biosy 97.3 0.0032 6.8E-08 49.8 10.2 21 26-46 7-27 (341)
426 PRK00771 signal recognition pa 97.3 0.0003 6.5E-09 57.2 4.4 23 22-44 94-116 (437)
427 cd00009 AAA The AAA+ (ATPases 97.3 0.0012 2.6E-08 44.9 6.9 25 24-48 20-44 (151)
428 PF13521 AAA_28: AAA domain; P 97.3 0.00014 3.1E-09 51.1 2.2 22 25-46 1-22 (163)
429 KOG2485|consensus 97.3 0.0003 6.5E-09 53.7 3.9 61 20-81 140-206 (335)
430 COG1126 GlnQ ABC-type polar am 97.3 0.00031 6.8E-09 51.1 3.7 24 25-48 30-53 (240)
431 cd02019 NK Nucleoside/nucleoti 97.3 0.00029 6.2E-09 42.1 3.0 21 26-46 2-22 (69)
432 COG1419 FlhF Flagellar GTP-bin 97.3 0.00049 1.1E-08 54.7 4.9 66 69-141 280-352 (407)
433 PF03266 NTPase_1: NTPase; In 97.3 0.00029 6.2E-09 49.9 3.2 52 25-78 1-52 (168)
434 KOG0469|consensus 97.2 0.001 2.3E-08 54.1 6.3 112 25-140 21-163 (842)
435 PF00005 ABC_tran: ABC transpo 97.2 0.00032 7E-09 47.7 3.0 23 25-47 13-35 (137)
436 PRK06217 hypothetical protein; 97.2 0.00037 8.1E-09 50.1 3.3 23 24-46 2-24 (183)
437 cd02042 ParA ParA and ParB of 97.2 0.0016 3.6E-08 42.0 6.0 82 26-119 2-84 (104)
438 PRK03839 putative kinase; Prov 97.2 0.00037 8E-09 49.9 3.1 22 25-46 2-23 (180)
439 PF00004 AAA: ATPase family as 97.1 0.00046 9.9E-09 46.4 3.0 22 26-47 1-22 (132)
440 PRK14530 adenylate kinase; Pro 97.1 0.00049 1.1E-08 50.8 3.2 22 24-45 4-25 (215)
441 COG1120 FepC ABC-type cobalami 97.1 0.00048 1E-08 51.9 3.0 21 25-45 30-50 (258)
442 smart00382 AAA ATPases associa 97.1 0.00061 1.3E-08 45.9 3.2 27 24-50 3-29 (148)
443 PF13238 AAA_18: AAA domain; P 97.0 0.00051 1.1E-08 46.0 2.7 21 26-46 1-21 (129)
444 TIGR00235 udk uridine kinase. 97.0 0.00078 1.7E-08 49.4 3.8 25 21-45 4-28 (207)
445 PRK10078 ribose 1,5-bisphospho 97.0 0.00065 1.4E-08 48.9 3.3 22 25-46 4-25 (186)
446 COG1161 Predicted GTPases [Gen 97.0 0.00099 2.1E-08 52.2 4.5 93 77-189 16-109 (322)
447 COG1936 Predicted nucleotide k 97.0 0.0006 1.3E-08 47.8 2.8 21 24-44 1-21 (180)
448 COG1136 SalX ABC-type antimicr 97.0 0.0006 1.3E-08 50.3 2.9 23 25-47 33-55 (226)
449 PRK04195 replication factor C 97.0 0.0052 1.1E-07 51.0 8.8 25 23-47 39-63 (482)
450 COG1116 TauB ABC-type nitrate/ 97.0 0.00063 1.4E-08 50.6 3.0 23 25-47 31-53 (248)
451 PRK08233 hypothetical protein; 97.0 0.00079 1.7E-08 48.1 3.5 24 23-46 3-26 (182)
452 PF04665 Pox_A32: Poxvirus A32 97.0 0.00068 1.5E-08 50.6 3.2 26 21-46 11-36 (241)
453 TIGR03263 guanyl_kin guanylate 97.0 0.0014 3E-08 46.8 4.7 22 25-46 3-24 (180)
454 KOG3929|consensus 97.0 0.00069 1.5E-08 50.5 3.1 88 18-108 40-133 (363)
455 PRK13949 shikimate kinase; Pro 97.0 0.00074 1.6E-08 47.9 3.2 21 25-45 3-23 (169)
456 TIGR02322 phosphon_PhnN phosph 97.0 0.00069 1.5E-08 48.4 3.0 22 25-46 3-24 (179)
457 PRK14532 adenylate kinase; Pro 97.0 0.00072 1.6E-08 48.7 3.1 22 24-45 1-22 (188)
458 PTZ00088 adenylate kinase 1; P 97.0 0.00075 1.6E-08 50.3 3.2 24 22-45 5-28 (229)
459 PRK05480 uridine/cytidine kina 97.0 0.00094 2E-08 49.0 3.7 26 21-46 4-29 (209)
460 PLN03025 replication factor C 97.0 0.0082 1.8E-07 47.1 9.2 24 24-47 35-58 (319)
461 COG3638 ABC-type phosphate/pho 97.0 0.00072 1.6E-08 49.8 2.9 21 25-45 32-52 (258)
462 cd03238 ABC_UvrA The excision 97.0 0.00081 1.8E-08 48.0 3.2 24 21-44 19-42 (176)
463 KOG3347|consensus 96.9 0.00065 1.4E-08 46.5 2.5 25 21-45 5-29 (176)
464 KOG0066|consensus 96.9 0.0063 1.4E-07 49.1 8.3 26 21-46 611-636 (807)
465 cd00071 GMPK Guanosine monopho 96.9 0.00084 1.8E-08 45.9 3.0 21 26-46 2-22 (137)
466 cd03111 CpaE_like This protein 96.9 0.0037 8E-08 40.7 5.9 61 72-136 44-106 (106)
467 PRK14531 adenylate kinase; Pro 96.9 0.00088 1.9E-08 48.1 3.2 22 24-45 3-24 (183)
468 PF03205 MobB: Molybdopterin g 96.9 0.00085 1.8E-08 46.0 3.0 22 25-46 2-23 (140)
469 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.0008 1.7E-08 50.5 3.0 21 25-45 32-52 (254)
470 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00081 1.7E-08 48.3 3.0 22 24-45 4-25 (188)
471 KOG2423|consensus 96.9 0.0069 1.5E-07 48.1 8.1 87 91-193 210-296 (572)
472 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0031 6.7E-08 42.7 5.5 24 24-47 23-46 (133)
473 cd03222 ABC_RNaseL_inhibitor T 96.9 0.00091 2E-08 47.8 3.0 24 24-47 26-49 (177)
474 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.00096 2.1E-08 49.3 3.3 24 24-47 31-54 (218)
475 PRK02496 adk adenylate kinase; 96.9 0.001 2.2E-08 47.8 3.3 22 24-45 2-23 (184)
476 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00096 2.1E-08 43.3 2.8 21 24-44 16-36 (107)
477 PF02367 UPF0079: Uncharacteri 96.9 0.0052 1.1E-07 41.0 6.4 24 24-47 16-39 (123)
478 PRK14723 flhF flagellar biosyn 96.9 0.0023 4.9E-08 55.3 5.8 22 24-45 186-207 (767)
479 PLN02200 adenylate kinase fami 96.9 0.0014 3.1E-08 49.0 4.1 25 21-45 41-65 (234)
480 PRK00625 shikimate kinase; Pro 96.9 0.001 2.2E-08 47.4 3.0 21 25-45 2-22 (173)
481 cd01131 PilT Pilus retraction 96.9 0.0026 5.5E-08 46.4 5.2 23 25-47 3-25 (198)
482 PF07728 AAA_5: AAA domain (dy 96.9 0.0009 1.9E-08 45.7 2.7 21 25-45 1-21 (139)
483 cd01428 ADK Adenylate kinase ( 96.9 0.00085 1.8E-08 48.5 2.7 22 25-46 1-22 (194)
484 COG3840 ThiQ ABC-type thiamine 96.8 0.0015 3.2E-08 46.5 3.6 24 25-48 27-50 (231)
485 cd01130 VirB11-like_ATPase Typ 96.8 0.0012 2.5E-08 47.7 3.3 25 23-47 25-49 (186)
486 cd03225 ABC_cobalt_CbiO_domain 96.8 0.0012 2.5E-08 48.6 3.3 24 24-47 28-51 (211)
487 TIGR01166 cbiO cobalt transpor 96.8 0.0012 2.5E-08 47.7 3.3 23 25-47 20-42 (190)
488 cd03226 ABC_cobalt_CbiO_domain 96.8 0.0012 2.5E-08 48.4 3.3 24 24-47 27-50 (205)
489 TIGR00960 3a0501s02 Type II (G 96.8 0.0012 2.6E-08 48.7 3.3 24 24-47 30-53 (216)
490 KOG2423|consensus 96.8 0.0011 2.4E-08 52.4 3.1 87 18-110 302-390 (572)
491 cd02023 UMPK Uridine monophosp 96.8 0.0011 2.4E-08 48.2 3.0 21 26-46 2-22 (198)
492 PRK10751 molybdopterin-guanine 96.8 0.0015 3.2E-08 46.4 3.5 24 23-46 6-29 (173)
493 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.0011 2.4E-08 47.5 3.0 20 26-45 2-21 (183)
494 cd03261 ABC_Org_Solvent_Resist 96.8 0.0012 2.6E-08 49.3 3.3 23 25-47 28-50 (235)
495 TIGR02673 FtsE cell division A 96.8 0.0012 2.7E-08 48.5 3.3 23 24-46 29-51 (214)
496 TIGR03608 L_ocin_972_ABC putat 96.8 0.0013 2.9E-08 48.0 3.3 23 25-47 26-48 (206)
497 cd03259 ABC_Carb_Solutes_like 96.8 0.0013 2.9E-08 48.3 3.3 22 25-46 28-49 (213)
498 cd03292 ABC_FtsE_transporter F 96.8 0.0013 2.9E-08 48.3 3.3 23 25-47 29-51 (214)
499 TIGR01351 adk adenylate kinase 96.8 0.001 2.2E-08 48.9 2.6 21 25-45 1-21 (210)
500 cd03265 ABC_DrrA DrrA is the A 96.8 0.0014 3E-08 48.5 3.3 23 24-46 27-49 (220)
No 1
>KOG0084|consensus
Probab=100.00 E-value=5.7e-42 Score=237.55 Aligned_cols=169 Identities=28% Similarity=0.574 Sum_probs=160.6
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
...+.+||+|+|+.|+|||+|+.||.++.|.+.+..|++.++ .+.+.++|+.++++||||+||++|+++...+++++++
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 456889999999999999999999999999999999999999 5789999999999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
+|+|||+++.+||.++. .|+..+.++. +++|.++||||+|+.+.+ .++.++++.++..+++..++|
T Consensus 85 ii~vyDiT~~~SF~~v~-~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~------------~v~~~~a~~fa~~~~~~~f~E 151 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVK-RWIQEIDRYASENVPKLLVGNKCDLTEKR------------VVSTEEAQEFADELGIPIFLE 151 (205)
T ss_pred EEEEEEcccHHHhhhHH-HHHHHhhhhccCCCCeEEEeeccccHhhe------------ecCHHHHHHHHHhcCCcceee
Confidence 99999999999999998 8999999998 788999999999999887 899999999999999998999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
+||+++.++++.|..+...+....
T Consensus 152 TSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 152 TSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred cccCCccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999887753
No 2
>KOG0092|consensus
Probab=100.00 E-value=1.2e-40 Score=230.12 Aligned_cols=166 Identities=31% Similarity=0.549 Sum_probs=155.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
...+|++++|..++|||||+.||..+.|.+...+|++..+ ++.+.+++..++|.||||+|+++|+++-++++++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 5679999999999999999999999999998899998888 788999999999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
+|||+++.+||..+. .|+..+.+.. +++-+.+||||+||...+ .+..++++.++.+.+.. |+|+|
T Consensus 83 vvYDit~~~SF~~aK-~WvkeL~~~~~~~~vialvGNK~DL~~~R------------~V~~~ea~~yAe~~gll-~~ETS 148 (200)
T KOG0092|consen 83 VVYDITDEESFEKAK-NWVKELQRQASPNIVIALVGNKADLLERR------------EVEFEEAQAYAESQGLL-FFETS 148 (200)
T ss_pred EEEecccHHHHHHHH-HHHHHHHhhCCCCeEEEEecchhhhhhcc------------cccHHHHHHHHHhcCCE-EEEEe
Confidence 999999999999998 8999999887 677788999999999865 89999999999999998 99999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhc
Q psy15714 179 AKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~~~ 200 (205)
|++|.|++++|..|.+.+....
T Consensus 149 AKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 149 AKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred cccccCHHHHHHHHHHhccCcc
Confidence 9999999999999999877643
No 3
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.4e-39 Score=234.72 Aligned_cols=178 Identities=52% Similarity=0.961 Sum_probs=155.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
..+||+++|+.|+|||||+.+|..+.|...+.+|.+..+...+.+++..+.+.|||++|+++|+.+++.+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 45899999999999999999999999999999999887766677899999999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
||++++.||+++...|+..+....+++|+++|+||.||.......+.......+.++.++++.+++..+..+++++||++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 99999999999976799888776678999999999999765432222222233467888999999999876699999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy15714 182 NEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~~~~ 199 (205)
|+|++++|.++++.+...
T Consensus 162 g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 162 QDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999988774
No 4
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.1e-39 Score=231.16 Aligned_cols=179 Identities=37% Similarity=0.738 Sum_probs=155.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
+...+||+++|++|+|||||+++|..+.|...+.||.+..+...+.+++..+.+.|||++|++.|+.+++.+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 34678999999999999999999999999999999998888777889999999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
+|||++++.||+++...|+..+....++.|+++||||+||...............+.++.++++++++..++.+|+||||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999998558999998888899999999999996432111111111123689999999999999756999999
Q ss_pred CCCCC-HHHHHHHHHHHHHh
Q psy15714 180 KLNEG-LDQVFIAAVRSAVK 198 (205)
Q Consensus 180 ~~~~~-i~~~~~~i~~~~~~ 198 (205)
++|+| ++++|..+++.+++
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999997765
No 5
>KOG0078|consensus
Probab=100.00 E-value=1.6e-39 Score=228.45 Aligned_cols=169 Identities=32% Similarity=0.585 Sum_probs=160.8
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
.+..+.+||+++|++++|||+|+.+|.++.|...+..|++.++ .+.+..++..+.+++||++|+++|+.+...+++.++
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 3678899999999999999999999999999999999999998 678999999999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL 175 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (205)
++++|||+++..||+++. .|+..+.++. .++|.++||||+|+...+ +++.++++.+|.++++. ++
T Consensus 87 gi~LvyDitne~Sfeni~-~W~~~I~e~a~~~v~~~LvGNK~D~~~~R------------~V~~e~ge~lA~e~G~~-F~ 152 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIR-NWIKNIDEHASDDVVKILVGNKCDLEEKR------------QVSKERGEALAREYGIK-FF 152 (207)
T ss_pred eeEEEEEccchHHHHHHH-HHHHHHHhhCCCCCcEEEeeccccccccc------------cccHHHHHHHHHHhCCe-EE
Confidence 999999999999999998 6999999999 599999999999999876 99999999999999999 99
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
|+||++|.||++.|..+.+.+.++.
T Consensus 153 EtSAk~~~NI~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 153 ETSAKTNFNIEEAFLSLARDILQKL 177 (207)
T ss_pred EccccCCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998643
No 6
>KOG0098|consensus
Probab=100.00 E-value=1.1e-39 Score=223.89 Aligned_cols=169 Identities=28% Similarity=0.523 Sum_probs=159.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....+|++++|+.|+|||+|+.+|++..|.+.++.|++.++ ...+.+++++++++|||++|++.|+++.+.+++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45679999999999999999999999999999999999988 57899999999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
++|||++.++||..+. .|+..++++. +|..+++++||+||...+ .++.+|++.||++++.. ++++
T Consensus 83 lLVydit~r~sF~hL~-~wL~D~rq~~~~NmvImLiGNKsDL~~rR------------~Vs~EEGeaFA~ehgLi-fmET 148 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLT-SWLEDARQHSNENMVIMLIGNKSDLEARR------------EVSKEEGEAFAREHGLI-FMET 148 (216)
T ss_pred EEEEEccchhhHHHHH-HHHHHHHHhcCCCcEEEEEcchhhhhccc------------cccHHHHHHHHHHcCce-eehh
Confidence 9999999999999998 8999999886 899999999999999887 89999999999999888 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~~~ 202 (205)
||++++|++|+|......+.++.+.
T Consensus 149 Sakt~~~VEEaF~nta~~Iy~~~q~ 173 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEIYRKIQD 173 (216)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887553
No 7
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.6e-38 Score=227.60 Aligned_cols=175 Identities=35% Similarity=0.712 Sum_probs=151.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
.+||+++|++|+|||||+++|..+.|...+.||.+..+...+.+++..+.+.|||++|++.|+.+++.+++++|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 37999999999999999999999999999999998887777888999999999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 182 (205)
|+++++||+++...|+..+....+++|+++||||+||...............+.++.++++++++.+++.+|+||||++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~ 160 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS 160 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence 99999999997558999998888899999999999996532111111111223688999999999999866999999999
Q ss_pred CC-HHHHHHHHHHHHH
Q psy15714 183 EG-LDQVFIAAVRSAV 197 (205)
Q Consensus 183 ~~-i~~~~~~i~~~~~ 197 (205)
+| ++++|..+++.++
T Consensus 161 ~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 161 EKSVRDIFHVATMACL 176 (178)
T ss_pred CcCHHHHHHHHHHHHh
Confidence 95 9999999999765
No 8
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.4e-38 Score=229.51 Aligned_cols=170 Identities=25% Similarity=0.407 Sum_probs=153.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....+||+++|..|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|+++|+.+++.+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34669999999999999999999999999888878776666 45677899999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
|+|||++++.+|+++. .|+..+....+++|++|||||.|+...+ .++.++++.+++..+.. +++||
T Consensus 83 llVfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~~------------~v~~~~~~~~a~~~~~~-~~e~S 148 (189)
T cd04121 83 ILVYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFKR------------QVATEQAQAYAERNGMT-FFEVS 148 (189)
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhcc------------CCCHHHHHHHHHHcCCE-EEEec
Confidence 9999999999999997 8999998877899999999999997654 78889999999998876 99999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714 179 AKLNEGLDQVFIAAVRSAVKKQDKS 203 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~~~~~~ 203 (205)
|++|.|++++|+++++.+.....++
T Consensus 149 Ak~g~~V~~~F~~l~~~i~~~~~~~ 173 (189)
T cd04121 149 PLCNFNITESFTELARIVLMRHGRP 173 (189)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999888765554
No 9
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.1e-38 Score=232.68 Aligned_cols=181 Identities=33% Similarity=0.646 Sum_probs=156.5
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
.....+||+++|++|+|||+|+++|..+.|...+.||++..+...+.+++..+.+.|||++|++.|+.+++.+++++|++
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 44577999999999999999999999999999999999888877788899999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
|+|||++++.+|+.+...|+..+....++.|+++|+||+|+...............+.++.++++.+++.+++.+|+|||
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 99999999999998655899999887788999999999998643211111111112478899999999999986699999
Q ss_pred cCCCC-CHHHHHHHHHHHHHhh
Q psy15714 179 AKLNE-GLDQVFIAAVRSAVKK 199 (205)
Q Consensus 179 a~~~~-~i~~~~~~i~~~~~~~ 199 (205)
|++|+ |++++|..++..+.++
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHh
Confidence 99998 8999999999988775
No 10
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=4.4e-38 Score=224.52 Aligned_cols=172 Identities=53% Similarity=0.948 Sum_probs=151.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|++|+|||||+.+|..+.|...+.+|.+..+...+.+++..+++.|||++|+++|+.++..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999999899999988877777889999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 183 (205)
+++++||+++...|+..+....+++|++|||||+|+...+.. .......+.++.++++.+++..+..+++||||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQY--LADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhh--hhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 999999999855899999877788999999999999654311 001122235889999999999988669999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy15714 184 GLDQVFIAAVRSAV 197 (205)
Q Consensus 184 ~i~~~~~~i~~~~~ 197 (205)
|++++|..+++.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 11
>KOG0080|consensus
Probab=100.00 E-value=6.8e-39 Score=214.76 Aligned_cols=165 Identities=30% Similarity=0.534 Sum_probs=155.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....+||+++|..|+|||||+.+|..+.|.+..+.|++.++ .+.+.++|..+++.|||++|+++|+.+.+.+++.+.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 45679999999999999999999999999999888899888 67889999999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
|+|||++.+++|..+. .|+..+..+. +++-.++|+||+|....+ .++.+++..+|+.+++. ++|
T Consensus 88 IlVYDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgNKiDkes~R------------~V~reEG~kfAr~h~~L-FiE 153 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGNKIDKESER------------VVDREEGLKFARKHRCL-FIE 153 (209)
T ss_pred EEEEEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcccccchhcc------------cccHHHHHHHHHhhCcE-EEE
Confidence 9999999999999995 9999999988 667778999999988765 89999999999999999 999
Q ss_pred cccCCCCCHHHHHHHHHHHHHh
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
+||++.+|++..|+.++..|++
T Consensus 154 ~SAkt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 154 CSAKTRENVQCCFEELVEKIIE 175 (209)
T ss_pred cchhhhccHHHHHHHHHHHHhc
Confidence 9999999999999999999886
No 12
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=8.8e-38 Score=223.49 Aligned_cols=173 Identities=54% Similarity=0.977 Sum_probs=152.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|++|+|||||+++|..+.|...+.||.+..+...+.+++..+.+.|||++|++.|..++..+++++|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 79999999999999999999999998899999988777677888999999999999999999999889999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 183 (205)
++++++++++...|+..+....+++|+++|+||+|+.......+.......+.++.++++.+++..+...++++||++|+
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~ 161 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQK 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCC
Confidence 99999999997679999987777899999999999976544333333333457889999999999886669999999999
Q ss_pred CHHHHHHHHHHHH
Q psy15714 184 GLDQVFIAAVRSA 196 (205)
Q Consensus 184 ~i~~~~~~i~~~~ 196 (205)
|++++|+.++..+
T Consensus 162 ~v~~~f~~~~~~~ 174 (175)
T cd01874 162 GLKNVFDEAILAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 13
>KOG0394|consensus
Probab=100.00 E-value=2e-38 Score=217.19 Aligned_cols=174 Identities=29% Similarity=0.524 Sum_probs=159.4
Q ss_pred ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCC
Q psy15714 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95 (205)
Q Consensus 17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 95 (205)
+......+||+++|++|+|||||.++|...+|...+..|++..+ .+.+.++++.+.++||||+|+++|.++.-.+++++
T Consensus 3 ~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRga 82 (210)
T KOG0394|consen 3 SLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGA 82 (210)
T ss_pred CcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCC
Confidence 33456779999999999999999999999999999999999888 68999999999999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
|.+++|||++++.||+.+. .|.+.+..++ ...|+||+|||+|+....+ ++++...++.|++..+
T Consensus 83 DcCvlvydv~~~~Sfe~L~-~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~----------r~VS~~~Aq~WC~s~g 151 (210)
T KOG0394|consen 83 DCCVLVYDVNNPKSFENLE-NWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS----------RQVSEKKAQTWCKSKG 151 (210)
T ss_pred ceEEEEeecCChhhhccHH-HHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc----------ceeeHHHHHHHHHhcC
Confidence 9999999999999999997 8999998776 3589999999999976432 2899999999999999
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
..||+|+||+.+.|++++|+.+.+.++..+.
T Consensus 152 nipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 152 NIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred CceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 9899999999999999999999999887653
No 14
>KOG0094|consensus
Probab=100.00 E-value=2.6e-38 Score=218.71 Aligned_cols=168 Identities=30% Similarity=0.510 Sum_probs=155.5
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
....+.+|++++|+.++||||||.+|..++|...|..|++.++ .+.+.+.+..+.+++|||+||++|+.+.+.+++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 3455669999999999999999999999999999999999998 678899999999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhC-C-CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHC-P-KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY 174 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (205)
++|+|||+++..||++.. .|+..+.... . ++-+++||||.||.+.+ +++.+++...|++++.. |
T Consensus 97 vaviVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~dkr------------qvs~eEg~~kAkel~a~-f 162 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSDKR------------QVSIEEGERKAKELNAE-F 162 (221)
T ss_pred EEEEEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccchh------------hhhHHHHHHHHHHhCcE-E
Confidence 999999999999999987 8999998776 3 57788999999999987 99999999999999997 9
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 175 LECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+++||+.|+||..+|..|...+...
T Consensus 163 ~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 163 IETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred EEecccCCCCHHHHHHHHHHhccCc
Confidence 9999999999999999988776554
No 15
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3e-37 Score=226.98 Aligned_cols=177 Identities=33% Similarity=0.725 Sum_probs=154.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+|+|++|+|||||+++|..+.|...+.||++..+...+.+++..+.+.|||++|++.|..+++.+++++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999999999999988887778899999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 183 (205)
++++++|+++...|...+....+++|+++|+||+|+.................++.++++.+++..++.+|+||||++++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~ 161 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE 161 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999999997789988877778999999999999976432211111112235788999999999998679999999998
Q ss_pred C-HHHHHHHHHHHHHhhc
Q psy15714 184 G-LDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 184 ~-i~~~~~~i~~~~~~~~ 200 (205)
+ ++++|..++..++.+.
T Consensus 162 ~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 162 RSVRDVFHVATVASLGRG 179 (222)
T ss_pred cCHHHHHHHHHHHHHhcc
Confidence 5 9999999999887753
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.5e-37 Score=224.92 Aligned_cols=163 Identities=28% Similarity=0.508 Sum_probs=146.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+.|+++|..|+|||||+++|..+.|...+.+|++..+ ...+.+++..+.+.+||++|+++|+.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 3689999999999999999999999988888887666 567888999999999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
|+++++||+++. .|+..+.... .++|+++|+||+|+...+ .++.++++++++......+++|||++
T Consensus 81 Dvtd~~Sf~~l~-~w~~~i~~~~~~~~piilVgNK~DL~~~~------------~v~~~~~~~~a~~~~~~~~~etSAkt 147 (202)
T cd04120 81 DITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDR------------EISRQQGEKFAQQITGMRFCEASAKD 147 (202)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccc------------ccCHHHHHHHHHhcCCCEEEEecCCC
Confidence 999999999997 8999888765 689999999999997644 78888899999886334499999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy15714 182 NEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~~~~ 199 (205)
|.||+++|.++++.+.+.
T Consensus 148 g~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 148 NFNVDEIFLKLVDDILKK 165 (202)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999988764
No 17
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=7.4e-37 Score=221.41 Aligned_cols=176 Identities=45% Similarity=0.788 Sum_probs=152.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI 104 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 104 (205)
||+++|++|+|||||+++|..+.+...+.+|.+..+...+.+++..+.+.|||++|++.|+.++..++..++++|+|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 89999999999999999999999988888998887766777888889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCC
Q psy15714 105 GSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG 184 (205)
Q Consensus 105 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 184 (205)
+++.+|+.+...|+..+....++.|+++|+||+|+.................++.+++..+++..+..+++++||++|+|
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~ 161 (189)
T cd04134 82 DSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRG 161 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCC
Confidence 99999999876799999877789999999999999776543332222333356778889999888866699999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy15714 185 LDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 185 i~~~~~~i~~~~~~~~ 200 (205)
++++|+++++.++..+
T Consensus 162 v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 162 VNEAFTEAARVALNVR 177 (189)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999988643
No 18
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=6.9e-37 Score=218.67 Aligned_cols=172 Identities=56% Similarity=1.031 Sum_probs=149.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|.+|+|||||+.++..+.+...+.++....+...+.+++..+++.|||++|++.|..+++.++.++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 69999999999999999999999998888999877766677889999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 183 (205)
+++++++.++...|+..+....+++|+++|+||+|+.......+.......+.++.+++..+++.++..++++|||++|+
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 161 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQK 161 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccC
Confidence 99999999987679988877777899999999999965433222222233347889999999999987569999999999
Q ss_pred CHHHHHHHHHHH
Q psy15714 184 GLDQVFIAAVRS 195 (205)
Q Consensus 184 ~i~~~~~~i~~~ 195 (205)
|++++|+.+++.
T Consensus 162 ~i~~~f~~l~~~ 173 (174)
T cd01871 162 GLKTVFDEAIRA 173 (174)
T ss_pred CHHHHHHHHHHh
Confidence 999999998764
No 19
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=4.3e-37 Score=219.38 Aligned_cols=166 Identities=27% Similarity=0.514 Sum_probs=150.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
.+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.|||+||++.|+.++..++..+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 47999999999999999999999999888889988777777888999999999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|++++.+++.+. .|...+.+.. +++|+++|+||+|+...+ .++.++++.+++..++. +++|||+
T Consensus 82 d~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilvgNK~Dl~~~~------------~v~~~~~~~~a~~~~~~-~~e~Sa~ 147 (172)
T cd04141 82 SVTDRHSFQEAS-EFKKLITRVRLTEDIPLVLVGNKVDLESQR------------QVTTEEGRNLAREFNCP-FFETSAA 147 (172)
T ss_pred ECCchhHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhhhhcC------------ccCHHHHHHHHHHhCCE-EEEEecC
Confidence 999999999997 6888777643 689999999999997654 67888999999988875 9999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccc
Q psy15714 181 LNEGLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~~~~~~~ 202 (205)
+|.|++++|+++++.+.+++.+
T Consensus 148 ~~~~v~~~f~~l~~~~~~~~~~ 169 (172)
T cd04141 148 LRHYIDDAFHGLVREIRRKESM 169 (172)
T ss_pred CCCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999998876654
No 20
>KOG0086|consensus
Probab=100.00 E-value=1.5e-37 Score=206.87 Aligned_cols=172 Identities=28% Similarity=0.500 Sum_probs=160.8
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 94 (205)
.++.....+|++++|+.|+|||+|+++|..+++.+....|++..+ +..+.+.++.++++|||++|+++|++..+.++++
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 345677889999999999999999999999999999999999888 6788899999999999999999999999999999
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
+.+.++|||++++++|+.+. .|+...+... +++-+++++||.||...+ +++-.++-.++.+..+.
T Consensus 82 AAGAlLVYD~TsrdsfnaLt-nWL~DaR~lAs~nIvviL~GnKkDL~~~R------------~VtflEAs~FaqEnel~- 147 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALT-NWLTDARTLASPNIVVILCGNKKDLDPER------------EVTFLEASRFAQENELM- 147 (214)
T ss_pred ccceEEEEeccchhhHHHHH-HHHHHHHhhCCCcEEEEEeCChhhcChhh------------hhhHHHHHhhhccccee-
Confidence 99999999999999999998 8999998887 789999999999999887 89999999999999997
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
+.|+||.+|+|++|.|....+.|+++.+
T Consensus 148 flETSa~TGeNVEEaFl~c~~tIl~kIE 175 (214)
T KOG0086|consen 148 FLETSALTGENVEEAFLKCARTILNKIE 175 (214)
T ss_pred eeeecccccccHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988654
No 21
>KOG0087|consensus
Probab=100.00 E-value=1.2e-36 Score=213.19 Aligned_cols=172 Identities=32% Similarity=0.503 Sum_probs=161.3
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 94 (205)
.+....+.+||+++|++++|||-|+.||..++|.....+|++..+ ...+.++++.++.+||||+|+++|+.....+++.
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 346678999999999999999999999999999999999999888 6789999999999999999999999999999999
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
+.++++|||++.+.+|+++. .|+..++.+. +++++++||||+||...+ .+..++++.+++..+..
T Consensus 87 AvGAllVYDITr~~Tfenv~-rWL~ELRdhad~nivimLvGNK~DL~~lr------------aV~te~~k~~Ae~~~l~- 152 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLNHLR------------AVPTEDGKAFAEKEGLF- 152 (222)
T ss_pred cceeEEEEechhHHHHHHHH-HHHHHHHhcCCCCeEEEEeecchhhhhcc------------ccchhhhHhHHHhcCce-
Confidence 99999999999999999887 9999999998 899999999999998865 88999999999999988
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++++||..+.|++++|+.++..|.+...
T Consensus 153 f~EtSAl~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 153 FLETSALDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred EEEecccccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887543
No 22
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=7.9e-36 Score=213.33 Aligned_cols=173 Identities=55% Similarity=1.018 Sum_probs=151.5
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECC
Q psy15714 26 VTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIG 105 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 105 (205)
|+|+|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.|..++..+++.+|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999999888888887777777788999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCH
Q psy15714 106 STSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGL 185 (205)
Q Consensus 106 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 185 (205)
++++++++...|+..+....+++|+++|+||+|+...............+.++.+++..+++..+..+++++||++++|+
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 99999998767999998877899999999999997654333322233334688899999999999866999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy15714 186 DQVFIAAVRSAVK 198 (205)
Q Consensus 186 ~~~~~~i~~~~~~ 198 (205)
+++|+.+++.+++
T Consensus 161 ~~lf~~l~~~~~~ 173 (174)
T smart00174 161 REVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988754
No 23
>KOG0093|consensus
Probab=100.00 E-value=2.5e-36 Score=199.61 Aligned_cols=171 Identities=28% Similarity=0.515 Sum_probs=158.5
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 94 (205)
....-...+|++++|+..+|||||+.++.+..|...+.+|.+..+ .+.+.-..+.++++|||++|+++|+.+...++++
T Consensus 14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRg 93 (193)
T KOG0093|consen 14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRG 93 (193)
T ss_pred ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhc
Confidence 344556678999999999999999999999999999999999888 5677777788999999999999999999999999
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
++++|++||+++.+||..+. .|...+..+. .+.|+|+|+||+|+.+++ .++.+.++.++.++|..
T Consensus 94 amgfiLmyDitNeeSf~svq-dw~tqIktysw~naqvilvgnKCDmd~eR------------vis~e~g~~l~~~LGfe- 159 (193)
T KOG0093|consen 94 AMGFILMYDITNEESFNSVQ-DWITQIKTYSWDNAQVILVGNKCDMDSER------------VISHERGRQLADQLGFE- 159 (193)
T ss_pred cceEEEEEecCCHHHHHHHH-HHHHHheeeeccCceEEEEecccCCccce------------eeeHHHHHHHHHHhChH-
Confidence 99999999999999999987 8999999988 899999999999999887 89999999999999998
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
+||+||+.+.|++.+|+.++..|.++.
T Consensus 160 fFEtSaK~NinVk~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 160 FFETSAKENINVKQVFERLVDIICDKM 186 (193)
T ss_pred HhhhcccccccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988764
No 24
>KOG0079|consensus
Probab=100.00 E-value=7.5e-37 Score=202.29 Aligned_cols=164 Identities=26% Similarity=0.559 Sum_probs=154.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
...++.+|+|++|+|||+|+.+|..+.|...|..|++.++ .+.+.++|..++++|||++|++.|+.+...++++.++++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 4567889999999999999999999999999999999888 468899999999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
+|||+++.+||.+.. .|+..++..++.+|-++||||.|++..+ .+..++++.|+...++. +||+||
T Consensus 86 vVYDVTn~ESF~Nv~-rWLeei~~ncdsv~~vLVGNK~d~~~Rr------------vV~t~dAr~~A~~mgie-~FETSa 151 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVK-RWLEEIRNNCDSVPKVLVGNKNDDPERR------------VVDTEDARAFALQMGIE-LFETSA 151 (198)
T ss_pred EEEECcchhhhHhHH-HHHHHHHhcCccccceecccCCCCccce------------eeehHHHHHHHHhcCch-heehhh
Confidence 999999999999998 9999999999999999999999999876 88999999999999999 999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy15714 180 KLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~ 198 (205)
+..+|++..|.-|.+.++.
T Consensus 152 Ke~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 152 KENENVEAMFHCITKQVLQ 170 (198)
T ss_pred hhcccchHHHHHHHHHHHH
Confidence 9999999999988877665
No 25
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=2.6e-35 Score=210.69 Aligned_cols=173 Identities=49% Similarity=0.880 Sum_probs=153.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.|...+..+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888877776678888989999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 183 (205)
++++.+++++...|+..+....++.|+++|+||+|+.+.............+.++.++++.+++..+..+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 99999999997789998887678999999999999976554444444444557888999999999998779999999999
Q ss_pred CHHHHHHHHHHHH
Q psy15714 184 GLDQVFIAAVRSA 196 (205)
Q Consensus 184 ~i~~~~~~i~~~~ 196 (205)
|++++|+.+++.+
T Consensus 161 gi~~~f~~~~~~~ 173 (174)
T cd04135 161 GLKTVFDEAILAI 173 (174)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999876
No 26
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.1e-35 Score=209.61 Aligned_cols=162 Identities=30% Similarity=0.544 Sum_probs=144.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
.+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..++++++++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999999888888877666 35677889899999999999999999988999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
||++++++++.+. .|+..+.... ++.|+++|+||+|+...+ .++.++++.+++..+.. ++++||+
T Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~Sa~ 147 (166)
T cd04122 82 YDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQR------------DVTYEEAKQFADENGLL-FLECSAK 147 (166)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccc------------CcCHHHHHHHHHHcCCE-EEEEECC
Confidence 9999999999987 8988876654 689999999999997654 67788899999888775 9999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy15714 181 LNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~~~ 198 (205)
+|.|++++|.++.+.+.+
T Consensus 148 ~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 148 TGENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999988754
No 27
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3e-35 Score=214.96 Aligned_cols=163 Identities=25% Similarity=0.424 Sum_probs=144.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.++ +..+.+.+||+||++.|+.+++.++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999999888888887665 4566677 7889999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
||++++.+++.+. .|+..+.... .++|+++|+||+|+...+ .+..+++..+++..+..++++
T Consensus 81 ~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~e 147 (201)
T cd04107 81 FDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL------------AKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCccccc------------ccCHHHHHHHHHHcCCceEEE
Confidence 9999999999997 8988776532 578999999999997533 677889999999998666999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhh
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+||++|+|++++|+++++.+...
T Consensus 148 ~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 148 TSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988774
No 28
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4e-35 Score=212.08 Aligned_cols=169 Identities=47% Similarity=0.905 Sum_probs=148.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|++|+|||||+++|.++.+...+.++.+..+...+... +..+.+.+||+||++.|..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 48999999999999999999999998888888887776556665 77889999999999999999888999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 182 (205)
|++++.+++++...|+..+....+++|+++|+||+|+...... .+.+..++++.+++..+..+++++||++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 152 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNL--------DRKVTPAQAESVAKKQGAFAYLECSAKTM 152 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccc--------cCCcCHHHHHHHHHHcCCcEEEEccCCCC
Confidence 9999999999976799888777778999999999998654211 12567888999999998856999999999
Q ss_pred CCHHHHHHHHHHHHHhhc
Q psy15714 183 EGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 183 ~~i~~~~~~i~~~~~~~~ 200 (205)
.|++++|..+++.+....
T Consensus 153 ~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 153 ENVEEVFDTAIEEALKKE 170 (187)
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 999999999999998864
No 29
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=6.1e-35 Score=212.98 Aligned_cols=163 Identities=26% Similarity=0.522 Sum_probs=146.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
..+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.|||+||++.++.++..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 469999999999999999999999999888888887655 4566778888899999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|||++++++++.+. .|+..+....+..|++||+||+|+.... .++.+++..+++..+.. ++++||+
T Consensus 85 v~D~~~~~s~~~~~-~~~~~i~~~~~~~piivVgNK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~Sa~ 150 (199)
T cd04110 85 VYDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPERK------------VVETEDAYKFAGQMGIS-LFETSAK 150 (199)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEEEECC
Confidence 99999999999987 8999988877889999999999997653 56778888888888855 9999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy15714 181 LNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~~~ 198 (205)
+|.|++++|+++.+.+..
T Consensus 151 ~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 151 ENINVEEMFNCITELVLR 168 (199)
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999999877
No 30
>KOG0095|consensus
Probab=100.00 E-value=4.3e-36 Score=199.16 Aligned_cols=168 Identities=27% Similarity=0.493 Sum_probs=154.6
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
..+..+||+++|+.|+|||+|+++|..+-|++....|++.++ -+.+.++|.+++++|||++|+++|+++...+++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 456789999999999999999999999999999999998888 5789999999999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
+|+|||++...+|+-+. +|+..++.+. ..+--++|+||+|+.+.+ .++.+.++++++....- +++
T Consensus 83 lilvydiscqpsfdclp-ewlreie~yan~kvlkilvgnk~d~~drr------------evp~qigeefs~~qdmy-fle 148 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLP-EWLREIEQYANNKVLKILVGNKIDLADRR------------EVPQQIGEEFSEAQDMY-FLE 148 (213)
T ss_pred EEEEEecccCcchhhhH-HHHHHHHHHhhcceEEEeeccccchhhhh------------hhhHHHHHHHHHhhhhh-hhh
Confidence 99999999999999998 9999999998 566778999999999876 78888999999887766 999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
+||+..+|++.+|..+.-.+....
T Consensus 149 tsakea~nve~lf~~~a~rli~~a 172 (213)
T KOG0095|consen 149 TSAKEADNVEKLFLDLACRLISEA 172 (213)
T ss_pred hcccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999887776643
No 31
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=1.1e-34 Score=207.28 Aligned_cols=171 Identities=49% Similarity=0.836 Sum_probs=147.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+|++++|++|+|||||++++..+.+...+.+|..+.+...+.+++..+.+.+||+||++.+..++..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999999998888888877666678888988999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 183 (205)
++++++++.+...|+..+....+++|+++|+||+|+...............+.+..+++..+++..+..+++++||++|.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 99999999987689988887667899999999999965432222222223347788899999999998679999999999
Q ss_pred CHHHHHHHHHH
Q psy15714 184 GLDQVFIAAVR 194 (205)
Q Consensus 184 ~i~~~~~~i~~ 194 (205)
|++++|+.++-
T Consensus 161 ~v~~lf~~~~~ 171 (173)
T cd04130 161 NLKEVFDTAIL 171 (173)
T ss_pred CHHHHHHHHHh
Confidence 99999998764
No 32
>KOG0091|consensus
Probab=100.00 E-value=9.9e-36 Score=200.13 Aligned_cols=168 Identities=29% Similarity=0.460 Sum_probs=151.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEE-ECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTIT-VDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
..++|++|+|+.-+|||+|++.|+.+++....+||.+.++ ...+. -+|..+++++|||+|+++|+++...++++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 4689999999999999999999999999999999998887 33333 468899999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC--CCC-CEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC--PKV-PIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL 175 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~-p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (205)
++|||+++++||+.+. .|+.....+. |.. -+++||+|+||...+ +++.++++.+++.++.. ++
T Consensus 86 llvyditnr~sfehv~-~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR------------qVt~EEaEklAa~hgM~-FV 151 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVE-NWVKEAAMATQGPDKVVFLLVGHKSDLQSQR------------QVTAEEAEKLAASHGMA-FV 151 (213)
T ss_pred EEEEeccchhhHHHHH-HHHHHHHHhcCCCCeeEEEEeccccchhhhc------------cccHHHHHHHHHhcCce-EE
Confidence 9999999999999997 8998887766 444 456999999999887 99999999999999999 99
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 202 (205)
|+||++|.|+++.|..+.+.+....++
T Consensus 152 ETSak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 152 ETSAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred EecccCCCcHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998876554
No 33
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=4.6e-35 Score=212.22 Aligned_cols=161 Identities=35% Similarity=0.564 Sum_probs=142.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI 104 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 104 (205)
||+++|.+|+|||||+++|..+.+...+.++.+..+...+.+++..+.+++||+||+++|+.++..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999999988888888877766777889889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhC----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 105 GSTSSYENILSKWYPELKHHC----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 105 ~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
+++.+++.+. .|+..+.... .++|+++|+||+|+...+ .++.+++..+++..+.. ++++||+
T Consensus 81 ~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~SAk 146 (190)
T cd04144 81 TSRSTFERVE-RFREQIQRVKDESAADVPIMIVGNKCDKVYER------------EVSTEEGAALARRLGCE-FIEASAK 146 (190)
T ss_pred CCHHHHHHHH-HHHHHHHHHhcccCCCCCEEEEEEChhccccC------------ccCHHHHHHHHHHhCCE-EEEecCC
Confidence 9999999987 7877776543 479999999999997643 66777788888888875 9999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy15714 181 LNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~~~~ 199 (205)
+|.|++++|+++++.+...
T Consensus 147 ~~~~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 147 TNVNVERAFYTLVRALRQQ 165 (190)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 34
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1e-34 Score=210.27 Aligned_cols=165 Identities=36% Similarity=0.554 Sum_probs=146.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
...+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|..++..+++.++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 44689999999999999999999999998888898887777778889999999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
|||++++++++.+. .|...+.... .++|+++|+||+|+...+ .+..+++..+++..+.. ++++|
T Consensus 83 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~------------~i~~~~~~~~~~~~~~~-~~e~S 148 (189)
T PTZ00369 83 VYSITSRSSFEEIA-SFREQILRVKDKDRVPMILVGNKCDLDSER------------QVSTGEGQELAKSFGIP-FLETS 148 (189)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc------------ccCHHHHHHHHHHhCCE-EEEee
Confidence 99999999999987 7888776654 589999999999986543 56777888888887765 99999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15714 179 AKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~~ 199 (205)
|++|.|++++|.++++.+.+.
T Consensus 149 ak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 149 AKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887764
No 35
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=7.4e-35 Score=206.08 Aligned_cols=160 Identities=33% Similarity=0.545 Sum_probs=141.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
.+||+++|++|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||+++|+.++..++++++++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999999888888887666677888999999999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+...+ .+..+++..+++.++. +++++||+
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (163)
T cd04136 81 SITSQSSFNDLQ-DLREQILRVKDTENVPMVLVGNKCDLEDER------------VVSREEGQALARQWGC-PFYETSAK 146 (163)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc------------eecHHHHHHHHHHcCC-eEEEecCC
Confidence 999999999987 7877776643 589999999999997643 5667778888888774 59999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15714 181 LNEGLDQVFIAAVRSA 196 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~ 196 (205)
+|.|++++|+++.+.+
T Consensus 147 ~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 147 SKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998764
No 36
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=7.9e-35 Score=206.29 Aligned_cols=161 Identities=31% Similarity=0.543 Sum_probs=142.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
++||+++|.+|+|||||++++..+.+...+.+|++..+...+.+++..+.+.+||+||++.++.++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 47999999999999999999999999888888888777777888999999999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.... .++.+++..+++..+.. ++++||+
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~ 146 (164)
T cd04175 81 SITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDER------------VVGKEQGQNLARQWGCA-FLETSAK 146 (164)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcchhcc------------EEcHHHHHHHHHHhCCE-EEEeeCC
Confidence 999999999987 6777765533 689999999999997653 56667778888887765 9999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy15714 181 LNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~~ 197 (205)
+|.|++++|.++.+.+.
T Consensus 147 ~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 147 AKINVNEIFYDLVRQIN 163 (164)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999987653
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.1e-34 Score=204.92 Aligned_cols=158 Identities=32% Similarity=0.565 Sum_probs=142.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|++|+|||||++++..+.+.+.+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..++..+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 4899999999999999999999999888888887665 466778888899999999999999999888999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
|++++++++.+. .|+..+.... .+.|+++|+||.|+...+ .++.+++..+++.++.. ++++||++
T Consensus 81 d~~~~~sf~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~Sa~~ 146 (161)
T cd04117 81 DISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQKR------------QVGDEQGNKLAKEYGMD-FFETSACT 146 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccc------------CCCHHHHHHHHHHcCCE-EEEEeCCC
Confidence 999999999997 7999887766 479999999999997654 67888999999988865 99999999
Q ss_pred CCCHHHHHHHHHHH
Q psy15714 182 NEGLDQVFIAAVRS 195 (205)
Q Consensus 182 ~~~i~~~~~~i~~~ 195 (205)
|.|++++|.+|.+.
T Consensus 147 ~~~v~~~f~~l~~~ 160 (161)
T cd04117 147 NSNIKESFTRLTEL 160 (161)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999864
No 38
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.7e-34 Score=205.17 Aligned_cols=163 Identities=30% Similarity=0.580 Sum_probs=145.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
..+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 358999999999999999999999999988888887766 3567788888999999999999999888889999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..+++..+++.++.. ++++||
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa 147 (167)
T cd01867 82 VYDITDEKSFENIR-NWMRNIEEHASEDVERMLVGNKCDMEEKR------------VVSKEEGEALADEYGIK-FLETSA 147 (167)
T ss_pred EEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECccccccc------------CCCHHHHHHHHHHcCCE-EEEEeC
Confidence 99999999999987 7999888765 689999999999998653 56778888888888875 999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy15714 180 KLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~ 198 (205)
+++.|++++|+++.+.+..
T Consensus 148 ~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 148 KANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 39
>KOG0393|consensus
Probab=100.00 E-value=2.1e-35 Score=208.63 Aligned_cols=180 Identities=56% Similarity=1.003 Sum_probs=165.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
...+|++|+|+..+|||+|+-.+..+.|+..|.||..+.+...+.++ ++.+.+.+|||+|+++|..+++..++++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35689999999999999999999999999999999999999999995 99999999999999999999988999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
++|++.++.|++++.+.|+..++++++++|+++||+|.||..+....+.........++.+++..++++.+...|+||||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 99999999999999999999999999999999999999999655444444444566899999999999999888999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc
Q psy15714 180 KLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~~~ 200 (205)
+++.|++++|+..+..++...
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhCCcHHHHHHHHHHHhccc
Confidence 999999999999999998753
No 40
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.3e-34 Score=208.74 Aligned_cols=162 Identities=31% Similarity=0.600 Sum_probs=142.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccc-eeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
+||+++|++|+|||||++++..+.+.. .+.++.+..+. ..+.+++..+.+.|||+||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998853 56777766653 4677889999999999999999998888899999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
||++++++++++. .|+..+.... .++|+++|+||+|+...+ .+..+++..+++.++.. ++++||+
T Consensus 81 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~~------------~~~~~~~~~l~~~~~~~-~~e~Sa~ 146 (191)
T cd04112 81 YDITNKASFDNIR-AWLTEIKEYAQEDVVIMLLGNKADMSGER------------VVKREDGERLAKEYGVP-FMETSAK 146 (191)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEcccchhcc------------ccCHHHHHHHHHHcCCe-EEEEeCC
Confidence 9999999999987 7998888776 589999999999997543 66777888888888865 9999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy15714 181 LNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~~~~ 199 (205)
+|+|++++|.++.+.+...
T Consensus 147 ~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 147 TGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998774
No 41
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.4e-34 Score=204.00 Aligned_cols=161 Identities=29% Similarity=0.547 Sum_probs=142.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|++|+|||||++++.++++...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999999888888887655 345667788899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
|++++++++.+. .|+..+.... .+.|+++|+||+|+...+ .+..+++..+++..+.. ++++||++
T Consensus 82 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~ 147 (165)
T cd01865 82 DITNEESFNAVQ-DWSTQIKTYSWDNAQVILVGNKCDMEDER------------VVSSERGRQLADQLGFE-FFEASAKE 147 (165)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCCEEEEEECcccCccc------------ccCHHHHHHHHHHcCCE-EEEEECCC
Confidence 999999999987 7999887766 589999999999997654 56677788888888775 99999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy15714 182 NEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~~~ 198 (205)
|.|++++|+++.+.+..
T Consensus 148 ~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 148 NINVKQVFERLVDIICD 164 (165)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987654
No 42
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=6.3e-34 Score=203.67 Aligned_cols=173 Identities=54% Similarity=0.948 Sum_probs=148.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
.||+++|++|+|||||++++..+.+...+.++.+..+...+.+++..+.+.+||++|++.|...+...+.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888888887776677888989999999999999999988888999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 183 (205)
++++++++.+...|+..+.+...++|+++|+||+|+.................+...+++.+++..+..++++|||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence 99999999987679998887767899999999999876543322222222335667889999998887779999999999
Q ss_pred CHHHHHHHHHHHH
Q psy15714 184 GLDQVFIAAVRSA 196 (205)
Q Consensus 184 ~i~~~~~~i~~~~ 196 (205)
|++++|+++.+.+
T Consensus 162 ~v~~lf~~l~~~~ 174 (175)
T cd01870 162 GVREVFEMATRAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 43
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.3e-34 Score=206.88 Aligned_cols=164 Identities=30% Similarity=0.510 Sum_probs=143.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEEC----------CEEEEEEEEEcCCCccccccccc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVD----------NKTYDVTLWDTAGQEDYERLRPM 90 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~ 90 (205)
+.+||+++|++|+|||||++++..+.+...+.+|.+..+. ..+.+. +..+.+.|||+||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 5699999999999999999999999999888888876553 334333 45789999999999999999999
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK 168 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (205)
+++++|++++|||+++++++.++. .|+..+.... ++.|+++|+||+|+...+ .++.+++..+++.
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~------------~v~~~~~~~~~~~ 149 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVR-NWMSQLQTHAYCENPDIVLCGNKADLEDQR------------QVSEEQAKALADK 149 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEeCccchhcC------------ccCHHHHHHHHHH
Confidence 999999999999999999999997 8999887654 689999999999997654 6777889999999
Q ss_pred cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 169 IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
.+.. ++++||++|.|++++|+++.+.+.++
T Consensus 150 ~~~~-~~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 150 YGIP-YFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred cCCe-EEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 8875 99999999999999999999887653
No 44
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=3.7e-34 Score=211.39 Aligned_cols=163 Identities=30% Similarity=0.519 Sum_probs=142.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
...+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+..++..+.+.+||++|++.|..++..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 6679999999999999999999999999888889887665 445667778899999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
+|||++++.+++.+. .|+..+.+..+++|+++|+||+|+... .+..++. .+++..+.. ++++||
T Consensus 91 lvfD~~~~~s~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~~-------------~v~~~~~-~~~~~~~~~-~~e~SA 154 (219)
T PLN03071 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAKQV-TFHRKKNLQ-YYEISA 154 (219)
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhhhhc-------------cCCHHHH-HHHHhcCCE-EEEcCC
Confidence 999999999999987 899999887789999999999998643 3334444 566666665 999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q psy15714 180 KLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~~ 199 (205)
++|.|++++|.++.+.+...
T Consensus 155 k~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 155 KSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999988754
No 45
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=4.5e-34 Score=202.79 Aligned_cols=162 Identities=28% Similarity=0.580 Sum_probs=144.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999999887778777655 45677888889999999999999999888999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
||+++++++..+. .|+..+.... ++.|+++|+||+|+.... .+..+++..+++..+.. ++++||+
T Consensus 82 ~d~~~~~s~~~l~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~ 147 (166)
T cd01869 82 YDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTDKR------------VVDYSEAQEFADELGIP-FLETSAK 147 (166)
T ss_pred EECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEEChhccccc------------CCCHHHHHHHHHHcCCe-EEEEECC
Confidence 9999999999998 7999888766 679999999999987654 67778889999888875 9999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy15714 181 LNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~~~ 198 (205)
+|+|++++|.++.+.+.+
T Consensus 148 ~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 148 NATNVEQAFMTMAREIKK 165 (166)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 999999999999988753
No 46
>KOG0088|consensus
Probab=100.00 E-value=3.9e-35 Score=196.38 Aligned_cols=167 Identities=29% Similarity=0.546 Sum_probs=155.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....||++++|...+|||||+-+|..++|.....+|....+ .+.+.+.+....+.|||++|+++|+.+-+-++++.+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 45779999999999999999999999999999999987777 57788888999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
++|||++|+.||+.+. .|...++... ..+-++||+||+||...+ .++.+++..+++..+.. |+++
T Consensus 90 lLVyDITDrdSFqKVK-nWV~Elr~mlGnei~l~IVGNKiDLEeeR------------~Vt~qeAe~YAesvGA~-y~eT 155 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVK-NWVLELRTMLGNEIELLIVGNKIDLEEER------------QVTRQEAEAYAESVGAL-YMET 155 (218)
T ss_pred EEEEeccchHHHHHHH-HHHHHHHHHhCCeeEEEEecCcccHHHhh------------hhhHHHHHHHHHhhchh-heec
Confidence 9999999999999998 8999998877 678899999999999887 89999999999999999 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
||+.+.||.++|+.+.+.+++..
T Consensus 156 SAk~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 156 SAKDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred ccccccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999988753
No 47
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3.7e-34 Score=202.35 Aligned_cols=159 Identities=34% Similarity=0.682 Sum_probs=147.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
||+++|++++|||||+++|.++.+.+.+.+|.+... ...+.+++..+.+.+||++|++.|..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999884444 6788899999999999999999999988889999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhCC-CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 182 (205)
+++++|++.+. .|+..+....+ +.|++|++||.|+...+ .++.++++.+++.++ .+|+++||+++
T Consensus 81 ~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~~------------~v~~~~~~~~~~~~~-~~~~e~Sa~~~ 146 (162)
T PF00071_consen 81 VTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDER------------EVSVEEAQEFAKELG-VPYFEVSAKNG 146 (162)
T ss_dssp TTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGGS------------SSCHHHHHHHHHHTT-SEEEEEBTTTT
T ss_pred ccccccccccc-cccccccccccccccceeeeccccccccc------------cchhhHHHHHHHHhC-CEEEEEECCCC
Confidence 99999999998 99999999886 79999999999998744 889999999999999 55999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy15714 183 EGLDQVFIAAVRSAV 197 (205)
Q Consensus 183 ~~i~~~~~~i~~~~~ 197 (205)
.|+.++|..+++.+.
T Consensus 147 ~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 147 ENVKEIFQELIRKIL 161 (162)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999875
No 48
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=5.1e-34 Score=201.91 Aligned_cols=160 Identities=31% Similarity=0.514 Sum_probs=140.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
++||+++|.+|+|||||++++..+.+.+.+.++....+...+.+++..+.+.|||+||+++|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888888877666667888898899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|++++++++++. .|+..+.... .++|+++|+||+|+.... .+..+++..+++..+. +++++||+
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piviv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (163)
T cd04176 81 SLVNQQTFQDIK-PMRDQIVRVKGYEKVPIILVGNKVDLESER------------EVSSAEGRALAEEWGC-PFMETSAK 146 (163)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhcC------------ccCHHHHHHHHHHhCC-EEEEecCC
Confidence 999999999987 7888777654 689999999999986543 5566677888877776 49999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15714 181 LNEGLDQVFIAAVRSA 196 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~ 196 (205)
++.|++++|.++.+.+
T Consensus 147 ~~~~v~~l~~~l~~~l 162 (163)
T cd04176 147 SKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998754
No 49
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=9.7e-34 Score=205.35 Aligned_cols=170 Identities=36% Similarity=0.668 Sum_probs=134.3
Q ss_pred eeEEEEECCCCCCHHHHHH-HHhcC-----CCCCCCcCccc--ccccee--------EEECCEEEEEEEEEcCCCccccc
Q psy15714 23 ALKVTTVGDGMVGKTCLLI-THTEN-----KFPTDYVPTVF--DNYPDT--------ITVDNKTYDVTLWDTAGQEDYER 86 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~-~~~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 86 (205)
.+||+++|+.|+|||||+. ++.++ .+...+.||++ +.+... +.+++..+.+.||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 66544 34566778875 223222 25789999999999999975 3
Q ss_pred ccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhh-------hhhhccccccH
Q psy15714 87 LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDK-------KKAAEVDLVST 159 (205)
Q Consensus 87 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-------~~~~~~~~~~~ 159 (205)
....+++++|++++|||++++.|++++...|+..+....+++|+++|+||+||......... ......+.++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 45668999999999999999999999975799999877778999999999999653110000 00111357899
Q ss_pred HHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 160 SQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
++++.+++.+++. |+||||++|+|++++|+.+++.
T Consensus 160 ~e~~~~a~~~~~~-~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIP-YYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCE-EEEcCCCCCCCHHHHHHHHHHh
Confidence 9999999999985 9999999999999999999864
No 50
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=6.7e-34 Score=209.14 Aligned_cols=171 Identities=25% Similarity=0.366 Sum_probs=134.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|.+++|||||+++|..+.|.. +.+|++..+.. .....+.+.|||++|++.|+.++..+++.+|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~---~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL---KQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE---EEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999999865 46666554321 11245789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhh------h-hhhhhccccccHHHHHHHHHHcCC-----
Q psy15714 104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTI------D-KKKAAEVDLVSTSQGKKMRRKIKA----- 171 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~----- 171 (205)
++++.+|.++...|.........++|+++|+||+|+....... . .......+.++.++++.++++.+.
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 9999999999844444443333689999999999997521100 0 000111347899999999998762
Q ss_pred --------ceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 172 --------AEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 172 --------~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
.+|+||||++|.||+++|..+++.+..
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 359999999999999999999988774
No 51
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=7.2e-34 Score=202.40 Aligned_cols=166 Identities=27% Similarity=0.503 Sum_probs=142.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
||+++|.+|+|||||++++..+.|...+.+|.+..+ ...+.+++..+.+.+||+||+++|..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999999999999988776 4667788989999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhh-C-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 104 IGSTSSYENILSKWYPELKHH-C-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
+++++++..+. .|+..+.+. . .+.|+++|+||.|+..... .....+++..+++.++.. ++++||++
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~-~~e~Sa~~ 149 (170)
T cd04108 82 LTDVASLEHTR-QWLEDALKENDPSSVLLFLVGTKKDLSSPAQ----------YALMEQDAIKLAAEMQAE-YWSVSALS 149 (170)
T ss_pred CcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEChhcCcccc----------ccccHHHHHHHHHHcCCe-EEEEECCC
Confidence 99999999987 799887554 3 3578999999999865431 023466778888888775 99999999
Q ss_pred CCCHHHHHHHHHHHHHhhcccCCC
Q psy15714 182 NEGLDQVFIAAVRSAVKKQDKSCC 205 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~~~~~~~~~~ 205 (205)
|.|++++|+.+.+.+. +-+||
T Consensus 150 g~~v~~lf~~l~~~~~---~~~~~ 170 (170)
T cd04108 150 GENVREFFFRVAALTF---ELGCC 170 (170)
T ss_pred CCCHHHHHHHHHHHHH---HccCC
Confidence 9999999999988883 34566
No 52
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=6.4e-34 Score=201.54 Aligned_cols=161 Identities=37% Similarity=0.589 Sum_probs=141.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|++|+|||||++++.++.+...+.++....+.....+++..+.+.+||+||++++...+..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 48999999999999999999999998888888877777777888889999999999999999999899999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
++++++++.+. .|...+.... .++|+++|+||+|+...+ .+..+++..+++..+.. ++++||++
T Consensus 81 ~~~~~s~~~~~-~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~ 146 (164)
T smart00173 81 ITDRQSFEEIK-KFREQILRVKDRDDVPIVLVGNKCDLESER------------VVSTEEGKELARQWGCP-FLETSAKE 146 (164)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc------------eEcHHHHHHHHHHcCCE-EEEeecCC
Confidence 99999999987 6777665543 479999999999997653 56677888888888755 99999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy15714 182 NEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~~~ 198 (205)
+.|++++|+++++.+..
T Consensus 147 ~~~i~~l~~~l~~~~~~ 163 (164)
T smart00173 147 RVNVDEAFYDLVREIRK 163 (164)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999987653
No 53
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=8.9e-34 Score=203.83 Aligned_cols=165 Identities=27% Similarity=0.520 Sum_probs=139.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|..|+|||||+++|..+.|...+.+|.+..+ .+.+.+++..+.+.|||++|++.|+.++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999988999988766 467888999999999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
|++++.+++++. .|+..+.+.. ...| ++|+||+|+........ +....++++.+++..+.. ++++||++
T Consensus 81 D~t~~~s~~~i~-~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~-------~~~~~~~~~~~a~~~~~~-~~e~SAk~ 150 (182)
T cd04128 81 DLTRKSTLNSIK-EWYRQARGFNKTAIP-ILVGTKYDLFADLPPEE-------QEEITKQARKYAKAMKAP-LIFCSTSH 150 (182)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCE-EEEEEchhccccccchh-------hhhhHHHHHHHHHHcCCE-EEEEeCCC
Confidence 999999999997 8999887765 3566 68899999964211000 012246778888888865 99999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy15714 182 NEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~~~ 198 (205)
|+|++++|+++.+.+..
T Consensus 151 g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 151 SINVQKIFKIVLAKAFD 167 (182)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988765
No 54
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=9e-34 Score=200.13 Aligned_cols=159 Identities=35% Similarity=0.598 Sum_probs=140.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
.+||+++|++|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||++|++.++.++..+++.++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 37999999999999999999999999888888888777677788888889999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|++++.+++++. .|+..+.+.. .+.|+++|+||+|+... ....+++..+++..+.. ++++||+
T Consensus 81 ~~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~~~Sa~ 145 (162)
T cd04138 81 AINSRKSFEDIH-TYREQIKRVKDSDDVPMVLVGNKCDLAAR-------------TVSSRQGQDLAKSYGIP-YIETSAK 145 (162)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc-------------eecHHHHHHHHHHhCCe-EEEecCC
Confidence 999999999987 6777776654 58999999999998753 56677788888887775 9999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15714 181 LNEGLDQVFIAAVRSA 196 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~ 196 (205)
+|.|++++|+++++.+
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 146 TRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 55
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.1e-33 Score=200.74 Aligned_cols=158 Identities=27% Similarity=0.495 Sum_probs=138.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|++|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||++|+++|..++..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888877766667778888999999999999999888888999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhC----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 104 IGSTSSYENILSKWYPELKHHC----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
++++++++.+. .|+..+.... +++|+++|+||+|+...+ .+..+++..++...+.. ++++||
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~SA 147 (165)
T cd04140 82 VTSKQSLEELK-PIYELICEIKGNNIEKIPIMLVGNKCDESHKR------------EVSSNEGAACATEWNCA-FMETSA 147 (165)
T ss_pred CCCHHHHHHHH-HHHHHHHHHhcCCCCCCCEEEEEECccccccC------------eecHHHHHHHHHHhCCc-EEEeec
Confidence 99999999987 6777776542 579999999999997643 56777788888888775 999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy15714 180 KLNEGLDQVFIAAVRS 195 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~ 195 (205)
++|+|++++|++|+..
T Consensus 148 ~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 148 KTNHNVQELFQELLNL 163 (165)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 9999999999999754
No 56
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=2.5e-33 Score=202.63 Aligned_cols=180 Identities=45% Similarity=0.819 Sum_probs=151.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
.||+++|++|+|||||++++..+.+.+.+.++....+...+.+++..+.+.+||++|++.+.......+..+++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 59999999999999999999988888777777776666667778888899999999999888777778899999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 183 (205)
+++.++++.+...|+..+....+++|+++|+||+|+......... ....+.++.++++.+++..+..+++++||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEE--YRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccc--cccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999976899999887788999999999998643221111 111235677888999999998779999999999
Q ss_pred CHHHHHHHHHHHHHhhccc----CCC
Q psy15714 184 GLDQVFIAAVRSAVKKQDK----SCC 205 (205)
Q Consensus 184 ~i~~~~~~i~~~~~~~~~~----~~~ 205 (205)
|++++|+++.+.++.-+++ +||
T Consensus 160 ~v~~~f~~l~~~~~~~~~~~~~~~~~ 185 (187)
T cd04129 160 GVDDVFEAATRAALLVRKSEPGAGCC 185 (187)
T ss_pred CHHHHHHHHHHHHhcccCcccccCcc
Confidence 9999999999988776665 487
No 57
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-33 Score=200.37 Aligned_cols=161 Identities=25% Similarity=0.458 Sum_probs=142.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
+.+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999999998887777776555 4567788888899999999999999988889999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+ ....+++..+++..+...++++||
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~e~Sa 148 (165)
T cd01864 82 AYDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQR------------EVLFEEACTLAEKNGMLAVLETSA 148 (165)
T ss_pred EEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECccccccc------------ccCHHHHHHHHHHcCCcEEEEEEC
Confidence 99999999999987 8999887755 689999999999997654 567778889999888877999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy15714 180 KLNEGLDQVFIAAVRS 195 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~ 195 (205)
++|.|++++|+++.+.
T Consensus 149 ~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 149 KESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999864
No 58
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=7.5e-34 Score=200.77 Aligned_cols=158 Identities=25% Similarity=0.526 Sum_probs=140.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC--CEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD--NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
+||+++|.+++|||||++++.++.+...+.++.+..+ ...+.++ +..+.+++||+||++.++.++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 4899999999999999999999999888888887666 4455666 778899999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|||+++++++..+. .|+..+.....++|+++|+||+|+.... .++.+++..+++..+.. ++++||+
T Consensus 81 v~d~~~~~s~~~l~-~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~~Sa~ 146 (162)
T cd04106 81 VFSTTDRESFEAIE-SWKEKVEAECGDIPMVLVQTKIDLLDQA------------VITNEEAEALAKRLQLP-LFRTSVK 146 (162)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhccccc------------CCCHHHHHHHHHHcCCe-EEEEECC
Confidence 99999999999987 8999988777899999999999997654 66778888999988875 9999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy15714 181 LNEGLDQVFIAAVRS 195 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~ 195 (205)
+++|++++|+++.+.
T Consensus 147 ~~~~v~~l~~~l~~~ 161 (162)
T cd04106 147 DDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998754
No 59
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.7e-33 Score=203.69 Aligned_cols=162 Identities=28% Similarity=0.510 Sum_probs=144.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999999877888887665 456778888899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
|++++.++..+. .|+..+.... .+.|+++|+||+|+.... .++.++++.++...+.. ++++||++
T Consensus 81 d~~~~~s~~~i~-~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~evSa~~ 146 (188)
T cd04125 81 DVTDQESFENLK-FWINEINRYARENVIKVIVANKSDLVNNK------------VVDSNIAKSFCDSLNIP-FFETSAKQ 146 (188)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCCCcccc------------cCCHHHHHHHHHHcCCe-EEEEeCCC
Confidence 999999999997 6999888765 578999999999997654 67778888888888875 99999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy15714 182 NEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~~~~ 199 (205)
+.|++++|+++.+.+.+.
T Consensus 147 ~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 147 SINVEEAFILLVKLIIKR 164 (188)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999998874
No 60
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.2e-33 Score=200.58 Aligned_cols=160 Identities=28% Similarity=0.528 Sum_probs=142.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888887666 456778899999999999999999998999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC------CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC------PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
|++++.++..+. .|+..+.... .+.|+++|+||+|+.... ..+.++.+.+++..+.. +++
T Consensus 81 D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~ 146 (168)
T cd04119 81 DVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR------------AVSEDEGRLWAESKGFK-YFE 146 (168)
T ss_pred ECCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEchhccccc------------ccCHHHHHHHHHHcCCe-EEE
Confidence 999999999987 7998887764 368999999999997533 56778888888888855 999
Q ss_pred cccCCCCCHHHHHHHHHHHHH
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
+||++|+|++++|+++++.++
T Consensus 147 ~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 147 TSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998875
No 61
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-33 Score=207.19 Aligned_cols=164 Identities=29% Similarity=0.525 Sum_probs=143.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEE-CCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITV-DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
++||+++|++|+|||||++++.++.+...+.+|++.++ ...+.+ ++..+.+++||++|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999999888788876655 345555 4677899999999999999998899999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
|||++++++++++. .|+..+.... ...|++||+||+|+.... .++.+++..+++.++.. ++++|
T Consensus 82 v~D~~~~~Sf~~l~-~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~S 147 (211)
T cd04111 82 VFDITNRESFEHVH-DWLEEARSHIQPHRPVFILVGHKCDLESQR------------QVTREEAEKLAKDLGMK-YIETS 147 (211)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEcccccccc------------ccCHHHHHHHHHHhCCE-EEEEe
Confidence 99999999999997 7988887654 357889999999997654 67888899999998855 99999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhc
Q psy15714 179 AKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~~~ 200 (205)
|++|+|++++|++|.+.+.+..
T Consensus 148 ak~g~~v~e~f~~l~~~~~~~~ 169 (211)
T cd04111 148 ARTGDNVEEAFELLTQEIYERI 169 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887653
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.8e-33 Score=199.12 Aligned_cols=160 Identities=36% Similarity=0.556 Sum_probs=140.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
.+||+++|++|+|||||++++.++.+...+.++....+.....+++..+.+.+||+||++++..++..+++++|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 48999999999999999999999998888888887766666778898899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|++++.+++.+. .|+..+.... .+.|+++++||+|+.... .+..+++..+++..+.. ++++||+
T Consensus 82 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~ 147 (164)
T cd04145 82 SVTDRGSFEEVD-KFHTQILRVKDRDEFPMILVGNKADLEHQR------------KVSREEGQELARKLKIP-YIETSAK 147 (164)
T ss_pred ECCCHHHHHHHH-HHHHHHHHHhCCCCCCEEEEeeCccccccc------------eecHHHHHHHHHHcCCc-EEEeeCC
Confidence 999999999987 6777776543 589999999999997653 56777788888888775 9999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15714 181 LNEGLDQVFIAAVRSA 196 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~ 196 (205)
+|.|++++|+++++.+
T Consensus 148 ~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 148 DRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999998764
No 63
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.8e-33 Score=199.43 Aligned_cols=161 Identities=33% Similarity=0.536 Sum_probs=141.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
...+||+++|++++|||||++++..+.+.+.+.++.+..+ ...+.+++..+.+.|||+||+++++.++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 4569999999999999999999999999887777776655 456778899999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY 174 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (205)
+|||++++.+++.+. .|...+.... .++|+++|+||+|+... .++.++++++++..+..++
T Consensus 83 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~ 148 (170)
T cd04116 83 LTFAVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVVLGNKNDIPER-------------QVSTEEAQAWCRENGDYPY 148 (170)
T ss_pred EEEECCCHHHHHhHH-HHHHHHHHhcccccCCCCcEEEEEECcccccc-------------ccCHHHHHHHHHHCCCCeE
Confidence 999999999999986 7887775533 46899999999998732 6778889999998887679
Q ss_pred EEcccCCCCCHHHHHHHHHHH
Q psy15714 175 LECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
+++||++|.|++++|+++++.
T Consensus 149 ~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 149 FETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 999999999999999999864
No 64
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=3.5e-33 Score=198.18 Aligned_cols=159 Identities=31% Similarity=0.550 Sum_probs=136.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|++|+|||||++++..+.+...+.+|.+..+ ...+..++..+.+.+||++|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999999998888888886655 345566788899999999999999988888999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 182 (205)
|+++++++..+. .|+..+.....++|+++|+||+|+... .+. .+...+++..+.. ++++||++|
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~piiiv~nK~Dl~~~-------------~~~-~~~~~~~~~~~~~-~~e~Sa~~~ 144 (166)
T cd00877 81 DVTSRVTYKNVP-NWHRDLVRVCGNIPIVLCGNKVDIKDR-------------KVK-AKQITFHRKKNLQ-YYEISAKSN 144 (166)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhcccc-------------cCC-HHHHHHHHHcCCE-EEEEeCCCC
Confidence 999999999987 899999887778999999999999732 222 2344566555555 999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy15714 183 EGLDQVFIAAVRSAVK 198 (205)
Q Consensus 183 ~~i~~~~~~i~~~~~~ 198 (205)
+|++++|+++.+.+.+
T Consensus 145 ~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 145 YNFEKPFLWLARKLLG 160 (166)
T ss_pred CChHHHHHHHHHHHHh
Confidence 9999999999998875
No 65
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=3.8e-33 Score=205.74 Aligned_cols=165 Identities=27% Similarity=0.483 Sum_probs=146.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.|||++|++++..++..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 44678999999999999999999999998877788887666 56778889999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+ .+..++++.++...+.. ++++
T Consensus 89 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~~~~~~l~~~~~~~-~~e~ 154 (216)
T PLN03110 89 LLVYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNHLR------------SVAEEDGQALAEKEGLS-FLET 154 (216)
T ss_pred EEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEEChhccccc------------CCCHHHHHHHHHHcCCE-EEEE
Confidence 9999999999999987 8999888766 589999999999996554 67778888888887765 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHh
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
||++|+|++++|+++++.+..
T Consensus 155 SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 155 SALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 66
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.1e-33 Score=207.14 Aligned_cols=161 Identities=21% Similarity=0.381 Sum_probs=142.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECC-EEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDN-KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
+||+++|.+|+|||||+++|.++.+...+.+|.+.++ ...+.+++ ..+.+.|||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888889887555 45566654 578999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
||++++++++.+. .|+..+.+.. .+.|+++|+||+|+...+ .++.+++..+++.++.. ++++
T Consensus 81 ~D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~------------~v~~~~~~~~~~~~~~~-~~~i 146 (215)
T cd04109 81 YDVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR------------TVKDDKHARFAQANGME-SCLV 146 (215)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEEE
Confidence 9999999999987 7999888764 357899999999997544 67888899999988875 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHh
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
||++|+|++++|+++++.+..
T Consensus 147 SAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 147 SAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998875
No 67
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=3.1e-33 Score=196.71 Aligned_cols=155 Identities=21% Similarity=0.384 Sum_probs=130.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|++|+|||||++++..+.|.+.+.++ ...+...+.+++..+.+.+||++|++. ..+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 58999999999999999999999987776555 444456788899999999999999975 245678999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
++++.||+++. .|+..+.... +++|+++|+||.|+.... .+.++.++++++++..+..++++|||++
T Consensus 75 ~~~~~sf~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~~----------~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 143 (158)
T cd04103 75 LENEASFQTVY-NLYHQLSSYRNISEIPLILVGTQDAISESN----------PRVIDDARARQLCADMKRCSYYETCATY 143 (158)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeeHHHhhhcC----------CcccCHHHHHHHHHHhCCCcEEEEecCC
Confidence 99999999997 6888887765 679999999999985321 1278888899999887644599999999
Q ss_pred CCCHHHHHHHHHHH
Q psy15714 182 NEGLDQVFIAAVRS 195 (205)
Q Consensus 182 ~~~i~~~~~~i~~~ 195 (205)
|+||+++|..+.+.
T Consensus 144 ~~~i~~~f~~~~~~ 157 (158)
T cd04103 144 GLNVERVFQEAAQK 157 (158)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998864
No 68
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=6e-33 Score=197.41 Aligned_cols=163 Identities=28% Similarity=0.532 Sum_probs=143.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..+...+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999999998877777776655 4566778888899999999999999888889999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
|||++++.++..+. .|+..+.... +++|+++|+||.|+.... .++.++++.++...+.. ++++||
T Consensus 83 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~Sa 148 (168)
T cd01866 83 VYDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESRR------------EVSYEEGEAFAKEHGLI-FMETSA 148 (168)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccc------------CCCHHHHHHHHHHcCCE-EEEEeC
Confidence 99999999999987 7999887765 789999999999987543 67778888888888776 999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy15714 180 KLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~ 198 (205)
++++|++++|.++.+.+.+
T Consensus 149 ~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 149 KTASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 69
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=7e-33 Score=201.32 Aligned_cols=166 Identities=27% Similarity=0.490 Sum_probs=142.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
+||+++|.+|+|||||+++|..+.+.. .+.+|++..+ ...+.+++..+.+.+||++|++.++.++..++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999874 6778887766 45788899999999999999999999988899999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
||++++.+++.+. .|+..+....+++|+++|+||+|+...... .+.+..+++..+++..+.. ++++||++
T Consensus 81 ~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~~~--------~~~v~~~~~~~~~~~~~~~-~~~~Sa~~ 150 (193)
T cd04118 81 YDLTDSSSFERAK-FWVKELQNLEEHCKIYLCGTKSDLIEQDRS--------LRQVDFHDVQDFADEIKAQ-HFETSSKT 150 (193)
T ss_pred EECCCHHHHHHHH-HHHHHHHhcCCCCCEEEEEEcccccccccc--------cCccCHHHHHHHHHHcCCe-EEEEeCCC
Confidence 9999999999986 799988877678999999999998643210 1255667788888887766 89999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy15714 182 NEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~~~~ 199 (205)
++|++++|+++.+.+.+.
T Consensus 151 ~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 151 GQNVDELFQKVAEDFVSR 168 (193)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999988663
No 70
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=3.3e-33 Score=197.32 Aligned_cols=158 Identities=30% Similarity=0.531 Sum_probs=140.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.|...++.+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887777776655 456778888899999999999999998889999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
|+++++++..+. .|+..+.... +++|+++++||.|+.... .++.+++..+++..+.. ++++||++
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~ 146 (161)
T cd04113 81 DITNRTSFEALP-TWLSDARALASPNIVVILVGNKSDLADQR------------EVTFLEASRFAQENGLL-FLETSALT 146 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcchhc------------cCCHHHHHHHHHHcCCE-EEEEECCC
Confidence 999999999987 7888876655 789999999999997643 67788889999988854 99999999
Q ss_pred CCCHHHHHHHHHHH
Q psy15714 182 NEGLDQVFIAAVRS 195 (205)
Q Consensus 182 ~~~i~~~~~~i~~~ 195 (205)
+.|++++|+++++.
T Consensus 147 ~~~i~~~~~~~~~~ 160 (161)
T cd04113 147 GENVEEAFLKCARS 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
No 71
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=8e-33 Score=196.78 Aligned_cols=162 Identities=30% Similarity=0.532 Sum_probs=143.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.|+.+++.+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888888887776677778898899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|++++++++.+. .|...+.+.. .++|+++++||.|+...+ .+..+++..+++.++..+++++||+
T Consensus 81 ~~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~SA~ 147 (168)
T cd04177 81 SVTSEASLNELG-ELREQVLRIKDSDNVPMVLVGNKADLEDDR------------QVSREDGVSLSQQWGNVPFYETSAR 147 (168)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhhCCCCCCEEEEEEChhccccC------------ccCHHHHHHHHHHcCCceEEEeeCC
Confidence 999999999987 7877776533 589999999999987654 5677778888888885569999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy15714 181 LNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~~ 197 (205)
++.|++++|.++...++
T Consensus 148 ~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 148 KRTNVDEVFIDLVRQII 164 (168)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987654
No 72
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=5.9e-33 Score=196.82 Aligned_cols=160 Identities=32% Similarity=0.533 Sum_probs=141.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
.+||+++|++++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++.++++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999998877788887665 56677888888999999999999999988899999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
||++++.++.++. .|+..+.... .++|+++|+||.|+...+ .+..++...+++..+.. ++++||+
T Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~ 148 (165)
T cd01868 83 YDITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLR------------AVPTEEAKAFAEKNGLS-FIETSAL 148 (165)
T ss_pred EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccc------------cCCHHHHHHHHHHcCCE-EEEEECC
Confidence 9999999999987 8999888776 469999999999987653 66777888888877665 9999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15714 181 LNEGLDQVFIAAVRSA 196 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~ 196 (205)
+|.|++++|+++++.+
T Consensus 149 ~~~~v~~l~~~l~~~i 164 (165)
T cd01868 149 DGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 73
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=9e-33 Score=202.99 Aligned_cols=166 Identities=29% Similarity=0.542 Sum_probs=146.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
...+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 3569999999999999999999999998887778877665 456778888899999999999999998888999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
+|||++++.++..+. .|+..+.... ++.|+++|+||+|+...+ .++.++++.+++.++.. ++++|
T Consensus 84 lv~D~~~~~s~~~l~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~S 149 (210)
T PLN03108 84 LVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEAS 149 (210)
T ss_pred EEEECCcHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCcccc------------CCCHHHHHHHHHHcCCE-EEEEe
Confidence 999999999999987 7887776554 689999999999997654 67888899999988875 99999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhc
Q psy15714 179 AKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~~~ 200 (205)
|+++.|++++|+++++.++++.
T Consensus 150 a~~~~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 150 AKTAQNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999988754
No 74
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=4.3e-33 Score=202.38 Aligned_cols=155 Identities=30% Similarity=0.551 Sum_probs=135.8
Q ss_pred ECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc
Q psy15714 29 VGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST 107 (205)
Q Consensus 29 ~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 107 (205)
+|.+|+|||||+++|..+.+...+.+|++..+ ...+.+++..+.+.|||++|++.|+.++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888888887666 46677888999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHH
Q psy15714 108 SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQ 187 (205)
Q Consensus 108 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 187 (205)
.+++.+. .|+..+.+..+++|+++|+||+|+... .+..++ ..+++..++. +++|||++|+||++
T Consensus 81 ~S~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~~-------------~v~~~~-~~~~~~~~~~-~~e~SAk~~~~v~~ 144 (200)
T smart00176 81 VTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKDR-------------KVKAKS-ITFHRKKNLQ-YYDISAKSNYNFEK 144 (200)
T ss_pred HHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc-------------cCCHHH-HHHHHHcCCE-EEEEeCCCCCCHHH
Confidence 9999987 799999887789999999999998642 333333 3566776766 99999999999999
Q ss_pred HHHHHHHHHHhh
Q psy15714 188 VFIAAVRSAVKK 199 (205)
Q Consensus 188 ~~~~i~~~~~~~ 199 (205)
+|.++++.+...
T Consensus 145 ~F~~l~~~i~~~ 156 (200)
T smart00176 145 PFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 75
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=9.9e-33 Score=194.99 Aligned_cols=159 Identities=28% Similarity=0.453 Sum_probs=135.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|.+|+|||||++++..+.+.+.+.++..... .....+++..+.+.+||++|++.|+.++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999999877777665443 445667888899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 182 (205)
|++++.++.++. .|+..+....++.|+++|+||+|+... . .++...++...+.. ++++||++|
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~p~ivv~nK~Dl~~~--------------~-~~~~~~~~~~~~~~-~~~~Sa~~~ 143 (161)
T cd04124 81 DVTRKITYKNLS-KWYEELREYRPEIPCIVVANKIDLDPS--------------V-TQKKFNFAEKHNLP-LYYVSAADG 143 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEECccCchh--------------H-HHHHHHHHHHcCCe-EEEEeCCCC
Confidence 999999999986 899999877778999999999998431 1 23445566666654 999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q psy15714 183 EGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 183 ~~i~~~~~~i~~~~~~~ 199 (205)
.|++++|+.+++.+...
T Consensus 144 ~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 144 TNVVKLFQDAIKLAVSY 160 (161)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999888764
No 76
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.5e-32 Score=195.73 Aligned_cols=160 Identities=29% Similarity=0.550 Sum_probs=140.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccc-cccccCcCCCcEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYE-RLRPMSYPNTDCFLL 100 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~i~ 100 (205)
.+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999999999999998877777776555 4567788989999999999999887 467888999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..+++..+++..... ++++|
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~S 147 (170)
T cd04115 82 VYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDLREQI------------QVPTDLAQRFADAHSMP-LFETS 147 (170)
T ss_pred EEECCCHHHHHhHH-HHHHHHHHhcCCCCCCEEEEEECccchhhc------------CCCHHHHHHHHHHcCCc-EEEEe
Confidence 99999999999987 8998887765 679999999999997654 67788888899888765 99999
Q ss_pred cCC---CCCHHHHHHHHHHHH
Q psy15714 179 AKL---NEGLDQVFIAAVRSA 196 (205)
Q Consensus 179 a~~---~~~i~~~~~~i~~~~ 196 (205)
|++ +.+++++|..+++.+
T Consensus 148 a~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 148 AKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred ccCCcCCCCHHHHHHHHHHHh
Confidence 999 899999999998766
No 77
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.3e-32 Score=198.79 Aligned_cols=164 Identities=26% Similarity=0.434 Sum_probs=133.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccc--------cccCcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERL--------RPMSYPN 94 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 94 (205)
+||+|+|.+|+|||||+++|.++.+...+.|+.+... ...+.+++..+.+.+||+||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888886554 456678898899999999997654321 2235789
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhh----CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH-c
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHH----CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK-I 169 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 169 (205)
+|++|+|||++++++++.+. .|+..+... ..++|+++|+||+|+...+ .+..++++.++++ +
T Consensus 81 ad~iilv~D~~~~~S~~~~~-~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~------------~~~~~~~~~~~~~~~ 147 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVK-LLRQQILETRPAGNKEPPIVVVGNKRDQQRHR------------FAPRHVLSVLVRKSW 147 (198)
T ss_pred CCEEEEEEECCCHHHHHHHH-HHHHHHHHhcccCCCCCCEEEEEECccccccc------------cccHHHHHHHHHHhc
Confidence 99999999999999999987 787776554 2679999999999997643 5566667777654 4
Q ss_pred CCceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++. ++++||++|.|++++|+.+++.+....+
T Consensus 148 ~~~-~~e~Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 148 KCG-YLECSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCc-EEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence 554 9999999999999999999988776543
No 78
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=1.4e-32 Score=205.75 Aligned_cols=162 Identities=25% Similarity=0.438 Sum_probs=139.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|.+|+|||||+++|..+.+...+.+|+++.+...+.+++..+.+.|||++|++.|..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 48999999999999999999999998888898886667778889999999999999999998888888899999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhh----------CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 104 IGSTSSYENILSKWYPELKHH----------CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
++++++|+++. .|+..+... ..++|+++|+||+|+...+ .+..+++.+++.......
T Consensus 81 v~~~~Sf~~i~-~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~------------~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 81 LDNRESFEEVC-RLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR------------EVQRDEVEQLVGGDENCA 147 (247)
T ss_pred CCCHHHHHHHH-HHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc------------ccCHHHHHHHHHhcCCCE
Confidence 99999999987 777777542 2579999999999997643 566777777766543445
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
++++||++|.|++++|++|.+.+..
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~~~ 172 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLAKL 172 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999987643
No 79
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=4e-32 Score=193.53 Aligned_cols=170 Identities=57% Similarity=1.046 Sum_probs=145.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|++|+|||||++++.++.+...+.++....+......++..+.+++||+||++.+...+...++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999997777888777666677788889999999999999988888888899999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 183 (205)
++++.++......|+..+.....+.|+++|+||+|+.......... ......+..+++..++...+..+++++||++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKL-EKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhc-ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999998878999998887889999999999998665322111 111224567888999999998679999999999
Q ss_pred CHHHHHHHHHH
Q psy15714 184 GLDQVFIAAVR 194 (205)
Q Consensus 184 ~i~~~~~~i~~ 194 (205)
|++++|+++++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 80
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=1.6e-32 Score=194.69 Aligned_cols=159 Identities=30% Similarity=0.469 Sum_probs=136.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCccc-ccccccCcCCCcEEEEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY-ERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~i~v~d 103 (205)
||+++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+ ......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 689999999999999999999998888888877666667788999999999999999853 3345667889999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 104 IGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
++++++++.+. .|+..+.... .++|+++|+||+|+...+ .++.++++.+++..+.. ++++||+
T Consensus 81 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~Sa~ 146 (165)
T cd04146 81 ITDRSSFDEIS-QLKQLIREIKKRDREIPVILVGNKADLLHYR------------QVSTEEGEKLASELGCL-FFEVSAA 146 (165)
T ss_pred CCCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCchHHhC------------ccCHHHHHHHHHHcCCE-EEEeCCC
Confidence 99999999987 7888887754 489999999999986543 67788889999888865 9999999
Q ss_pred CCC-CHHHHHHHHHHHHH
Q psy15714 181 LNE-GLDQVFIAAVRSAV 197 (205)
Q Consensus 181 ~~~-~i~~~~~~i~~~~~ 197 (205)
++. |++++|.++.+.+.
T Consensus 147 ~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 147 EDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCchhHHHHHHHHHHHHh
Confidence 995 99999999998764
No 81
>KOG0081|consensus
Probab=100.00 E-value=1.2e-34 Score=194.07 Aligned_cols=171 Identities=29% Similarity=0.488 Sum_probs=154.5
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC---------CEEEEEEEEEcCCCcccccc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD---------NKTYDVTLWDTAGQEDYERL 87 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~---------~~~~~~~i~D~~g~~~~~~~ 87 (205)
......+|++.+|++|+||||++.++.+++|.....+|.+.++ .+.+.++ +..+.+++||++|+++|+++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 3456778999999999999999999999999999999999888 4555542 46789999999999999999
Q ss_pred cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714 88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (205)
...|++.+-+++++||+++..||-++. .|+..+..++ ++..+++++||+||.+.+ .++..++..+
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvr-nWlSQL~~hAYcE~PDivlcGNK~DL~~~R------------~Vs~~qa~~L 150 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVR-NWLSQLQTHAYCENPDIVLCGNKADLEDQR------------VVSEDQAAAL 150 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHH-HHHHHHHHhhccCCCCEEEEcCccchhhhh------------hhhHHHHHHH
Confidence 999999999999999999999999998 8999998766 788899999999999887 8999999999
Q ss_pred HHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714 166 RRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 166 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 202 (205)
+.+++++ |+|+||-+|.|+++..+.++..+++..++
T Consensus 151 a~kyglP-YfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 151 ADKYGLP-YFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred HHHhCCC-eeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999888876543
No 82
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.7e-32 Score=194.14 Aligned_cols=164 Identities=21% Similarity=0.274 Sum_probs=139.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccc-eeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
.+.+||+++|.+|+|||||+++|.++.+. ..+.+|.+..+. ..+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 45789999999999999999999999998 888999887764 5677888889999999999999998888899999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
++|||++++.+++.+. .|+..+... .++|+++|+||+|+.... .....+...+++.++...++++|
T Consensus 82 llv~d~~~~~s~~~~~-~~~~~~~~~-~~~p~iiv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~S 147 (169)
T cd01892 82 CLVYDSSDPKSFSYCA-EVYKKYFML-GEIPCLFVAAKADLDEQQ------------QRYEVQPDEFCRKLGLPPPLHFS 147 (169)
T ss_pred EEEEeCCCHHHHHHHH-HHHHHhccC-CCCeEEEEEEcccccccc------------cccccCHHHHHHHcCCCCCEEEE
Confidence 9999999999999886 787765332 479999999999986543 33344566777777775579999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15714 179 AKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~ 198 (205)
|++++|++++|+.+.+.+.+
T Consensus 148 a~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 148 SKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred eccCccHHHHHHHHHHHhhC
Confidence 99999999999999998764
No 83
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=4.2e-32 Score=192.09 Aligned_cols=161 Identities=34% Similarity=0.579 Sum_probs=141.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999998777777776655 456777888889999999999999998899999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
|++++.+++.+. .|+..+..+. +++|+++|+||+|+.... .+..++++.+++..+.. ++++||.+
T Consensus 81 d~~~~~s~~~~~-~~l~~~~~~~~~~~pivvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~e~Sa~~ 146 (164)
T smart00175 81 DITNRESFENLK-NWLKELREYADPNVVIMLVGNKSDLEDQR------------QVSREEAEAFAEEHGLP-FFETSAKT 146 (164)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhccccc------------CCCHHHHHHHHHHcCCe-EEEEeCCC
Confidence 999999999987 6999988776 789999999999987643 56777888888888876 99999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy15714 182 NEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~~~ 198 (205)
++|++++|+++.+.+.+
T Consensus 147 ~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 147 NTNVEEAFEELAREILK 163 (164)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 84
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=6.6e-32 Score=192.56 Aligned_cols=164 Identities=31% Similarity=0.551 Sum_probs=141.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887777776555 456778888899999999999999999989999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
|++++.+++++. .|...+.... .++|+++|+||+|+..+. ..+.++.+.+.+..+..+++++
T Consensus 81 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 147 (172)
T cd01862 81 DVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEKR------------QVSTKKAQQWCQSNGNIPYFET 147 (172)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECccccccc------------ccCHHHHHHHHHHcCCceEEEE
Confidence 999999998876 7877665544 279999999999997533 5667778888888876669999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
||++|.|++++|+++.+.+.+..
T Consensus 148 Sa~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 148 SAKEAINVEQAFETIARKALEQE 170 (172)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999988764
No 85
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=7e-32 Score=190.85 Aligned_cols=160 Identities=32% Similarity=0.577 Sum_probs=141.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
++||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998876777777655 56778889999999999999999998888899999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
||+++++++..+. .|+..+.... +++|+++++||+|+.... ....++...+.+..+.. ++++||+
T Consensus 81 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~ 146 (163)
T cd01860 81 YDITSEESFEKAK-SWVKELQRNASPNIIIALVGNKADLESKR------------QVSTEEAQEYADENGLL-FFETSAK 146 (163)
T ss_pred EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccC------------cCCHHHHHHHHHHcCCE-EEEEECC
Confidence 9999999999987 8888887766 789999999999987543 56677788888888855 9999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15714 181 LNEGLDQVFIAAVRSA 196 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~ 196 (205)
+|.|++++|+++++.+
T Consensus 147 ~~~~v~~l~~~l~~~l 162 (163)
T cd01860 147 TGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999875
No 86
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=5.8e-32 Score=191.49 Aligned_cols=159 Identities=26% Similarity=0.495 Sum_probs=135.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCCCCcCcccccc-ceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN--KFPTDYVPTVFDNY-PDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
+||+++|++|+|||||++++..+ .+...+.++.+..+ ...+.++ +..+++.+||+||++.++.+++.++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 67778888886555 3444453 67799999999999999988889999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
+|||++++.++..+. .|+..+.....++|+++|+||+|+.... .+...+++.++...+.. ++++||
T Consensus 81 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa 146 (164)
T cd04101 81 LVYDVSNKASFENCS-RWVNKVRTASKHMPGVLVGNKMDLADKA------------EVTDAQAQAFAQANQLK-FFKTSA 146 (164)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccccccc------------CCCHHHHHHHHHHcCCe-EEEEeC
Confidence 999999999999886 8999888776789999999999997653 56666677777777765 999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy15714 180 KLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~ 196 (205)
+++.|++++|+.+.+.+
T Consensus 147 ~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 147 LRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCChHHHHHHHHHHh
Confidence 99999999999998875
No 87
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.5e-31 Score=196.76 Aligned_cols=166 Identities=29% Similarity=0.497 Sum_probs=141.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....+||+++|.+|+|||||+++|..+.+. .+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 445799999999999999999999998874 4566666555 35567788889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
|+|||+++++++.++...|...+.... .+.|+++|+||+|+.... .+..+++..+++..+.. +++
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~------------~i~~~~~~~~~~~~~~~-~~e 156 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESER------------DVSREEGMALAKEHGCL-FLE 156 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC------------ccCHHHHHHHHHHcCCE-EEE
Confidence 999999999999999867887776543 468999999999997654 56777888888888776 999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhh
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+||+++.|++++|+++.+.+...
T Consensus 157 ~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 157 CSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999888653
No 88
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.1e-31 Score=189.44 Aligned_cols=158 Identities=30% Similarity=0.536 Sum_probs=137.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|++++|||||++++.+..+...+.++.+.++ ...+.+++..+++.+||+||+..++..+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999998777777776555 456777888889999999999999998889999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
|+++++++..+. .|+..+.... .+.|+++++||+|+.... ....++...+++..+.. ++++||++
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~ 146 (161)
T cd01861 81 DITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDLSDKR------------QVSTEEGEKKAKELNAM-FIETSAKA 146 (161)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhccccC------------ccCHHHHHHHHHHhCCE-EEEEeCCC
Confidence 999999999987 7888876655 479999999999996443 66777888888888765 99999999
Q ss_pred CCCHHHHHHHHHHH
Q psy15714 182 NEGLDQVFIAAVRS 195 (205)
Q Consensus 182 ~~~i~~~~~~i~~~ 195 (205)
++|++++|+++.+.
T Consensus 147 ~~~v~~l~~~i~~~ 160 (161)
T cd01861 147 GHNVKELFRKIASA 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999864
No 89
>KOG0097|consensus
Probab=100.00 E-value=4.2e-32 Score=178.80 Aligned_cols=170 Identities=28% Similarity=0.484 Sum_probs=156.0
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
-....-+|.+++|+-|+|||+|+..|...+|...-+.|++..+ ...+.+.|+.++++|||++|+++|+...+.+++.+.
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa 85 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 85 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 3456789999999999999999999999999888888998888 577889999999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL 175 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (205)
+.+.|||++.+.++..+. .|+...+... ++..+++++||.||...+ .++.++++.++.+.+.. ++
T Consensus 86 galmvyditrrstynhls-swl~dar~ltnpnt~i~lignkadle~qr------------dv~yeeak~faeengl~-fl 151 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLESQR------------DVTYEEAKEFAEENGLM-FL 151 (215)
T ss_pred ceeEEEEehhhhhhhhHH-HHHhhhhccCCCceEEEEecchhhhhhcc------------cCcHHHHHHHHhhcCeE-EE
Confidence 999999999999999987 7988887766 889999999999999876 89999999999999999 99
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++||++|.++++.|.+....+....+
T Consensus 152 e~saktg~nvedafle~akkiyqniq 177 (215)
T KOG0097|consen 152 EASAKTGQNVEDAFLETAKKIYQNIQ 177 (215)
T ss_pred EecccccCcHHHHHHHHHHHHHHhhh
Confidence 99999999999999998888877544
No 90
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=2.5e-31 Score=196.63 Aligned_cols=160 Identities=26% Similarity=0.386 Sum_probs=135.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccc-cccceeEEECCEEEEEEEEEcCCCcccccccccCcC-CCcEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVF-DNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYP-NTDCFLL 100 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~i~ 100 (205)
+||+++|++|+|||||+++|..+.+. ..+.++.+ +.+...+.+++..+.+.+||++|++. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 66667665 44466788888899999999999983 23344556 8999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+ .++.++++.++...++. ++++|
T Consensus 79 V~d~td~~S~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~~------------~v~~~~~~~~a~~~~~~-~~e~S 144 (221)
T cd04148 79 VYSVTDRSSFERAS-ELRIQLRRNRQLEDRPIILVGNKSDLARSR------------EVSVQEGRACAVVFDCK-FIETS 144 (221)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhccccc------------eecHHHHHHHHHHcCCe-EEEec
Confidence 99999999999987 7888887654 589999999999997654 67778888888888876 99999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15714 179 AKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~~ 199 (205)
|+++.|++++|+++++.+...
T Consensus 145 A~~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 145 AGLQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999988643
No 91
>KOG0395|consensus
Probab=100.00 E-value=1.6e-31 Score=192.78 Aligned_cols=164 Identities=39% Similarity=0.595 Sum_probs=151.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
..+||+++|.+|+|||+|+.+|..+.|.+.|.||+++.+.+.+.+++..+.+.|+|++|+++|..+...++.+.+++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHH-hhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 102 FSIGSTSSYENILSKWYPEL-KHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
|+++++.||+.+. .+...+ +... ..+|+++||||+|+...+ .++.++++.+++.+++. |+|+||
T Consensus 82 ysitd~~SF~~~~-~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R------------~V~~eeg~~la~~~~~~-f~E~Sa 147 (196)
T KOG0395|consen 82 YSITDRSSFEEAK-QLREQILRVKGRDDVPIILVGNKCDLERER------------QVSEEEGKALARSWGCA-FIETSA 147 (196)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhCcCCCCEEEEEEcccchhcc------------ccCHHHHHHHHHhcCCc-EEEeec
Confidence 9999999999998 455555 3333 678999999999998875 89999999999999999 999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q psy15714 180 KLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~~ 199 (205)
+.+.+++++|..+++.+...
T Consensus 148 k~~~~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 148 KLNYNVDEVFYELVREIRLP 167 (196)
T ss_pred cCCcCHHHHHHHHHHHHHhh
Confidence 99999999999999988773
No 92
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=3.7e-31 Score=186.86 Aligned_cols=157 Identities=32% Similarity=0.562 Sum_probs=137.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999998777777777665 345667788899999999999999888888999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|++++.+++.+. .|+..+..+. .++|+++|+||+|+... ....++...+++..+.. ++++||+
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~~~-------------~~~~~~~~~~~~~~~~~-~~~~Sa~ 145 (161)
T cd01863 81 DVTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKENR-------------EVTREEGLKFARKHNML-FIETSAK 145 (161)
T ss_pred ECCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCccccc-------------ccCHHHHHHHHHHcCCE-EEEEecC
Confidence 999999999987 6988887765 68999999999999743 45667788888887766 9999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy15714 181 LNEGLDQVFIAAVRS 195 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~ 195 (205)
+|.|++++|+++++.
T Consensus 146 ~~~gi~~~~~~~~~~ 160 (161)
T cd01863 146 TRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998875
No 93
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=3.6e-31 Score=186.79 Aligned_cols=159 Identities=33% Similarity=0.626 Sum_probs=137.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|++|+|||||++++.++.+...+.++....+ ...+...+..+.+.+||+||++.+..+++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999998776666665544 455667788889999999999999999988999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
|+++++++..+. .|+..+.... .++|+++++||+|+.... .+..++...+++..+.. ++++||++
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~s~~~ 146 (162)
T cd04123 81 DITDADSFQKVK-KWIKELKQMRGNNISLVIVGNKIDLERQR------------VVSKSEAEEYAKSVGAK-HFETSAKT 146 (162)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccc------------CCCHHHHHHHHHHcCCE-EEEEeCCC
Confidence 999999999987 7888887766 479999999999987543 56667777788877776 99999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy15714 182 NEGLDQVFIAAVRSA 196 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~ 196 (205)
++|++++|+++.+.+
T Consensus 147 ~~gi~~~~~~l~~~~ 161 (162)
T cd04123 147 GKGIEELFLSLAKRM 161 (162)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 94
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.98 E-value=7.3e-31 Score=185.65 Aligned_cols=161 Identities=32% Similarity=0.533 Sum_probs=139.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|++|+|||||++++..+.+...+.++....+......++..+.+.+||+||+..+...+..+++.++++++|||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999998888888877777777888889999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
++++.++..+. .|...+.... .++|+++|+||+|+.... ....++.+.+.+.++.. ++++||++
T Consensus 81 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~ 146 (164)
T cd04139 81 ITDMESFTATA-EFREQILRVKDDDNVPLLLVGNKCDLEDKR------------QVSSEEAANLARQWGVP-YVETSAKT 146 (164)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEcccccccc------------ccCHHHHHHHHHHhCCe-EEEeeCCC
Confidence 99999999987 5666665542 589999999999997632 45566677777777765 99999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy15714 182 NEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~~~ 198 (205)
++|++++|+++.+.+..
T Consensus 147 ~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 147 RQNVEKAFYDLVREIRQ 163 (164)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987753
No 95
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.98 E-value=5.7e-31 Score=189.17 Aligned_cols=161 Identities=18% Similarity=0.205 Sum_probs=123.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
++.+||+++|.+++|||||++++..+.+. .+.||.+..+. .+.. ..+.+.+||+||++.++.++..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45689999999999999999999988875 35677665442 3333 34789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhh-CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc----CCceEE
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI----KAAEYL 175 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 175 (205)
|||++++.++.++...+...+... .+++|++|++||+|+.... ..++......-. ....++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--------------~~~~~~~~l~l~~~~~~~~~~~ 156 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHWYIQ 156 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--------------CHHHHHHHhCccccCCCceEEE
Confidence 999999999998874444444332 2689999999999987532 222222221111 112366
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
++||++|+|++++|+||.+.+.++
T Consensus 157 ~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 157 STCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred eccCCCCCCHHHHHHHHHHHHhhc
Confidence 899999999999999999988765
No 96
>KOG0083|consensus
Probab=99.98 E-value=5e-33 Score=181.30 Aligned_cols=158 Identities=31% Similarity=0.580 Sum_probs=145.5
Q ss_pred EEECCCCCCHHHHHHHHhcCCCC-CCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714 27 TTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI 104 (205)
Q Consensus 27 ~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 104 (205)
+++|++++|||+|+-+|.++.|- .+..+|.+.++ .+.+..++..+++++||++|+++|++....+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999888888774 56788888888 57888999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714 105 GSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183 (205)
Q Consensus 105 ~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 183 (205)
.++.||++.. .|+..+.++. ..+.+.+++||+|+...+ .+..++++.+++.++++ ++++||++|.
T Consensus 81 ankasfdn~~-~wlsei~ey~k~~v~l~llgnk~d~a~er------------~v~~ddg~kla~~y~ip-fmetsaktg~ 146 (192)
T KOG0083|consen 81 ANKASFDNCQ-AWLSEIHEYAKEAVALMLLGNKCDLAHER------------AVKRDDGEKLAEAYGIP-FMETSAKTGF 146 (192)
T ss_pred ccchhHHHHH-HHHHHHHHHHHhhHhHhhhccccccchhh------------ccccchHHHHHHHHCCC-ceeccccccc
Confidence 9999999987 8999999988 678899999999998876 78889999999999999 9999999999
Q ss_pred CHHHHHHHHHHHHHh
Q psy15714 184 GLDQVFIAAVRSAVK 198 (205)
Q Consensus 184 ~i~~~~~~i~~~~~~ 198 (205)
|++-.|..|.+.+.+
T Consensus 147 nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 147 NVDLAFLAIAEELKK 161 (192)
T ss_pred cHhHHHHHHHHHHHH
Confidence 999999999988776
No 97
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=9.8e-31 Score=185.67 Aligned_cols=164 Identities=24% Similarity=0.395 Sum_probs=129.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|.+|+|||||++++..+.+...+..+ ...+.....+++..+.+.+||+||++.++..+..++..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 48999999999999999999999987654433 33334445567778999999999999888777777899999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC-CceEEEcccCCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK-AAEYLECSAKLN 182 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~ 182 (205)
++++.+++.+...|+..++...+++|+++|+||+|+...... ....++...++..+. ..+++++||+++
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 149 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ----------AGLEEEMLPIMNEFREIETCVECSAKTL 149 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch----------hHHHHHHHHHHHHHhcccEEEEeccccc
Confidence 999999999866899988876678999999999999765321 011223333333333 335999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy15714 183 EGLDQVFIAAVRSAVK 198 (205)
Q Consensus 183 ~~i~~~~~~i~~~~~~ 198 (205)
.|++++|+.+...+.+
T Consensus 150 ~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 150 INVSEVFYYAQKAVLH 165 (166)
T ss_pred cCHHHHHHHHHHHhcC
Confidence 9999999999988764
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.98 E-value=2.4e-31 Score=189.07 Aligned_cols=156 Identities=17% Similarity=0.212 Sum_probs=121.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+.+||+++|.+++|||||++++..+.+.. +.+|.+..+. .+.. ..+.+++||+||+++++.+++.+++.+|++|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 356899999999999999999999887753 5666665442 2333 45889999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhh-CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH---c-CCceEE
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK---I-KAAEYL 175 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~ 175 (205)
|||++++.++.++...|...+... .+++|+++|+||+|+.. .++.++++.+... . ...+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~i~~~~~~~~~~~~~~~~~ 148 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--------------AMKPHEIQEKLGLTRIRDRNWYVQ 148 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--------------CCCHHHHHHHcCCCccCCCcEEEE
Confidence 999999999999875555555443 26799999999999864 2344455444321 1 122489
Q ss_pred EcccCCCCCHHHHHHHHHH
Q psy15714 176 ECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~ 194 (205)
++||++|.|++++|+||.+
T Consensus 149 ~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 149 PSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EeeCCCCCChHHHHHHHhc
Confidence 9999999999999999864
No 99
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.5e-30 Score=183.94 Aligned_cols=162 Identities=27% Similarity=0.499 Sum_probs=137.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
...+||+++|++|+|||||++++..+.+.+.+.++.+..+ ...+.+++..+.+.+||+||+..++..+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4569999999999999999999998888776666665444 446678888899999999999999988888999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
+|||+++..+++.+. .|+..+.... .++|+++|+||+|+...+ .+..+..+.+.+..... ++++|
T Consensus 85 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~~------------~i~~~~~~~~~~~~~~~-~~~~S 150 (169)
T cd04114 85 LTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAERR------------EVSQQRAEEFSDAQDMY-YLETS 150 (169)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccc------------ccCHHHHHHHHHHcCCe-EEEee
Confidence 999999999999887 8988887766 479999999999987644 56666677777766644 99999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15714 179 AKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~ 196 (205)
|++|.|++++|+++.+.+
T Consensus 151 a~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 151 AKESDNVEKLFLDLACRL 168 (169)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 100
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=4.3e-30 Score=184.65 Aligned_cols=164 Identities=30% Similarity=0.494 Sum_probs=138.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
.||+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+.+||+||+++++..+..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999988878888776666677788888899999999999999888889999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714 104 IGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 182 (205)
+++..+++.+...|...++... .+.|+++|+||+|+...+ .+..++...+++.++.. ++++||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 148 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR------------QVSTEEGKELAESWGAA-FLESSAREN 148 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC------------ccCHHHHHHHHHHcCCe-EEEEeCCCC
Confidence 9999999998844444444333 578999999999987543 55566677777777755 999999999
Q ss_pred CCHHHHHHHHHHHHHhhc
Q psy15714 183 EGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 183 ~~i~~~~~~i~~~~~~~~ 200 (205)
.|++++|.++.+.+....
T Consensus 149 ~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 149 ENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999887653
No 101
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=2.4e-30 Score=182.19 Aligned_cols=157 Identities=37% Similarity=0.616 Sum_probs=137.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI 104 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 104 (205)
||+++|++|+|||||++++.+..+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999988888888887766666777787789999999999999988888899999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714 105 GSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182 (205)
Q Consensus 105 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 182 (205)
++++++.++. .|...+.... .++|+++|+||+|+.... .++.++++.+++.++.. ++++||+++
T Consensus 81 ~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~S~~~~ 146 (160)
T cd00876 81 TDRESFEEIK-GYREQILRVKDDEDIPIVLVGNKCDLENER------------QVSKEEGKALAKEWGCP-FIETSAKDN 146 (160)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCcccccc------------eecHHHHHHHHHHcCCc-EEEeccCCC
Confidence 9999999987 5666665554 489999999999998743 66778888888888855 999999999
Q ss_pred CCHHHHHHHHHHH
Q psy15714 183 EGLDQVFIAAVRS 195 (205)
Q Consensus 183 ~~i~~~~~~i~~~ 195 (205)
+|++++|++|.+.
T Consensus 147 ~~i~~l~~~l~~~ 159 (160)
T cd00876 147 INIDEVFKLLVRE 159 (160)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999875
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=3.6e-30 Score=185.18 Aligned_cols=161 Identities=21% Similarity=0.259 Sum_probs=123.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+.+||+++|++++|||||++++..+.+.. +.+|.+..+. .+.. ..+.+.+||+||++.++..+..+++.+|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 456899999999999999999999888864 5667665442 3333 44789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhh-CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH-----HHHcCCceE
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM-----RRKIKAAEY 174 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 174 (205)
|||++++.++.++...|...+... ..+.|++||+||.|+.... ..++.... .+... ..+
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~l~~~~~~~~~-~~~ 155 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--------------STTEVTEKLGLHSVRQRN-WYI 155 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--------------CHHHHHHHhCCCcccCCc-EEE
Confidence 999999999999875555554432 2579999999999986532 11111111 11111 236
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 175 LECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
+++||++|.|++++|++|.+.+.++.
T Consensus 156 ~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 156 QGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred EeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 79999999999999999999887764
No 103
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=3.3e-30 Score=184.38 Aligned_cols=158 Identities=19% Similarity=0.224 Sum_probs=120.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+.+||+++|++|+|||||++++..+.+. .+.||++..+. .+... .+.+.+||+||++.++..+..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 44699999999999999999999888874 45677665543 23333 4789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhh-CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH-----HHHcCCceE
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM-----RRKIKAAEY 174 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 174 (205)
|||++++.++++....|...+... ..++|++||+||+|+.... ..++.... ++... ..+
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~-~~~ 151 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--------------KAAEITEKLGLHSIRDRN-WYI 151 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--------------CHHHHHHHhCccccCCCc-EEE
Confidence 999999999999884444444433 2679999999999986532 11121111 11112 237
Q ss_pred EEcccCCCCCHHHHHHHHHHHHH
Q psy15714 175 LECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
+++||++|+|++++|+||.+.+.
T Consensus 152 ~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 152 QPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred EEeeCCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999987754
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=5.1e-30 Score=182.51 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=123.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI 104 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 104 (205)
||+++|.+++|||||++++.++.+.. +.+|.+..+. .+.. ..+.+.+||+||+..++..+..+++.+|+++||||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999987754 5666654442 2333 347899999999999998888899999999999999
Q ss_pred CCcchHHHHHHHHHHHHhh-h-CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC-----CceEEEc
Q psy15714 105 GSTSSYENILSKWYPELKH-H-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK-----AAEYLEC 177 (205)
Q Consensus 105 ~~~~s~~~~~~~~~~~~~~-~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 177 (205)
+++.++.++. .|+..+.. . ..+.|+++|+||+|+.. .++.++++.+++..+ ...++++
T Consensus 77 s~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T cd04158 77 SHRDRVSEAH-SELAKLLTEKELRDALLLIFANKQDVAG--------------ALSVEEMTELLSLHKLCCGRSWYIQGC 141 (169)
T ss_pred CcHHHHHHHH-HHHHHHhcChhhCCCCEEEEEeCcCccc--------------CCCHHHHHHHhCCccccCCCcEEEEeC
Confidence 9999999987 55555543 2 25689999999999864 345556666554322 1247899
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
||++|.|++++|+||.+.+....
T Consensus 142 Sa~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 142 DARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred cCCCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999998876643
No 105
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=8e-30 Score=185.90 Aligned_cols=160 Identities=27% Similarity=0.398 Sum_probs=132.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI 104 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 104 (205)
||+++|.+|+|||||++++..+.+...+.++........+.+++..+.+.+||+||+..|..++..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999999988777777655556777888889999999999999998888899999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH-HcCCceEEEcccCC
Q psy15714 105 GSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR-KIKAAEYLECSAKL 181 (205)
Q Consensus 105 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 181 (205)
+++.+++.+. .|+..+.... .++|+++|+||+|+..... .+..++..+... ..+.. ++++||++
T Consensus 81 ~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~-----------~v~~~~~~~~~~~~~~~~-~~~~Sa~~ 147 (198)
T cd04147 81 DDPESFEEVE-RLREEILEVKEDKFVPIVVVGNKADSLEEER-----------QVPAKDALSTVELDWNCG-FVETSAKD 147 (198)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEccccccccc-----------cccHHHHHHHHHhhcCCc-EEEecCCC
Confidence 9999999987 7877666654 4799999999999865311 344444444433 33444 89999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy15714 182 NEGLDQVFIAAVRSAV 197 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~~ 197 (205)
|.|++++|+++++.+.
T Consensus 148 g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 148 NENVLEVFKELLRQAN 163 (198)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999998765
No 106
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=5.7e-30 Score=179.69 Aligned_cols=157 Identities=35% Similarity=0.631 Sum_probs=136.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+||+++|++++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999999887777776655 456677778899999999999999998899999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
|+++++++..+. .|+..+.... .+.|+++++||+|+.... ....++.+.+++..+.. ++++||++
T Consensus 81 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~sa~~ 146 (159)
T cd00154 81 DITNRESFENLD-KWLKELKEYAPENIPIILVGNKIDLEDQR------------QVSTEEAQQFAKENGLL-FFETSAKT 146 (159)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEcccccccc------------cccHHHHHHHHHHcCCe-EEEEecCC
Confidence 999999999987 6998888876 689999999999997332 56778888888877665 99999999
Q ss_pred CCCHHHHHHHHHH
Q psy15714 182 NEGLDQVFIAAVR 194 (205)
Q Consensus 182 ~~~i~~~~~~i~~ 194 (205)
+.|++++|.+|.+
T Consensus 147 ~~~i~~~~~~i~~ 159 (159)
T cd00154 147 GENVEELFQSLAE 159 (159)
T ss_pred CCCHHHHHHHHhC
Confidence 9999999999863
No 107
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=5.5e-30 Score=180.54 Aligned_cols=153 Identities=19% Similarity=0.234 Sum_probs=116.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|.+++|||||++++..+.+.. +.||.+.... .+.. ..+.+.+||+||+++++..+..+++++|+++||||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 489999999999999999998888864 5677665432 2333 35889999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH----HHcCCceEEEcc
Q psy15714 104 IGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR----RKIKAAEYLECS 178 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~S 178 (205)
++++.+++.+...|...+.... .+.|+++++||+|+..... ..+....+. .... ..++++|
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------------~~~i~~~~~~~~~~~~~-~~~~~~S 142 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-------------AAEVTDKLGLHSLRNRN-WYIQATC 142 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-------------HHHHHHHhCccccCCCC-EEEEEee
Confidence 9999999998754555444322 5799999999999965311 111111121 1112 2378999
Q ss_pred cCCCCCHHHHHHHHHH
Q psy15714 179 AKLNEGLDQVFIAAVR 194 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~ 194 (205)
|++|+|++++|++|.+
T Consensus 143 ak~g~gv~~~~~~l~~ 158 (159)
T cd04150 143 ATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCHHHHHHHHhc
Confidence 9999999999999864
No 108
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=5.7e-31 Score=186.43 Aligned_cols=156 Identities=14% Similarity=0.195 Sum_probs=123.9
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECC
Q psy15714 26 VTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIG 105 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 105 (205)
|+++|++|+|||||+++|.++.+...+.||.+... ..+++..+++.+||+||++.++..+..+++++|++++|||++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 78999999999999999999988888888876542 334555688999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC----
Q psy15714 106 STSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL---- 181 (205)
Q Consensus 106 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---- 181 (205)
++.++..+. .|+..+....+++|+++|+||+|+.......... ...++..++++.+.. ++++||++
T Consensus 79 ~~~s~~~~~-~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~--------~~~~~~~~~~~~~~~-~~~~Sa~~~~s~ 148 (164)
T cd04162 79 DSERLPLAR-QELHQLLQHPPDLPLVVLANKQDLPAARSVQEIH--------KELELEPIARGRRWI-LQGTSLDDDGSP 148 (164)
T ss_pred CHHHHHHHH-HHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHH--------HHhCChhhcCCCceE-EEEeeecCCCCh
Confidence 999998887 6777665544789999999999997654211100 011234555555554 88888888
Q ss_pred --CCCHHHHHHHHHH
Q psy15714 182 --NEGLDQVFIAAVR 194 (205)
Q Consensus 182 --~~~i~~~~~~i~~ 194 (205)
++|++++|+.++.
T Consensus 149 ~~~~~v~~~~~~~~~ 163 (164)
T cd04162 149 SRMEAVKDLLSQLIN 163 (164)
T ss_pred hHHHHHHHHHHHHhc
Confidence 9999999998864
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=2.3e-29 Score=185.79 Aligned_cols=167 Identities=29% Similarity=0.508 Sum_probs=140.9
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
......+||+++|++|+|||||++++..+.+...+.+|.+..+. ..+..++..+.+.+||++|++.+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 44566799999999999999999999999998888888877663 44556788899999999999999988888899999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
++++|||++++.++..+. .|+..+.....++|+++++||+|+... ....+. ..+++..+.. +++
T Consensus 84 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~i~lv~nK~Dl~~~-------------~~~~~~-~~~~~~~~~~-~~e 147 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKDR-------------QVKARQ-ITFHRKKNLQ-YYD 147 (215)
T ss_pred EEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccCccc-------------cCCHHH-HHHHHHcCCE-EEE
Confidence 999999999999999987 899888877788999999999998643 222222 3456666665 999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
+||++|.|++++|.++.+.+....
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999887643
No 110
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.7e-29 Score=181.95 Aligned_cols=164 Identities=21% Similarity=0.281 Sum_probs=125.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEE-CCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITV-DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
..+||+++|.+|+|||||++++..+.+... .+|.+... ...+.. ++..+.+.+||+||++.++..+..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999999887654 56655433 223333 346688999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH--c---CCc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK--I---KAA 172 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~ 172 (205)
+|||++++.++..+. .|+..+.... .+.|+++|+||+|+... ...++...+... . ...
T Consensus 81 ~v~D~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd04152 81 FVVDSVDVERMEEAK-TELHKITRFSENQGVPVLVLANKQDLPNA--------------LSVSEVEKLLALHELSASTPW 145 (183)
T ss_pred EEEECCCHHHHHHHH-HHHHHHHhhhhcCCCcEEEEEECcCcccc--------------CCHHHHHHHhCccccCCCCce
Confidence 999999998888876 6766665433 57999999999998642 223333333221 1 113
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
+++++||+++.|++++|++|.+.+.+.++
T Consensus 146 ~~~~~SA~~~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 146 HVQPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999998876543
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=7.5e-29 Score=177.13 Aligned_cols=155 Identities=19% Similarity=0.265 Sum_probs=118.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
...+||+++|++|+|||||++++.+..+ ..+.+|.+.. ...+.+++ +.+.+||+||++.++..+..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4568999999999999999999998755 3455665532 23444554 789999999999998888889999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH----cCCceE
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK----IKAAEY 174 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 174 (205)
|||++++.++.+.. .|+..+... ..+.|+++|+||+|+... ...++...+.+. ....++
T Consensus 88 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 152 (173)
T cd04154 88 VVDSSDRLRLDDCK-RELKELLQEERLAGATLLILANKQDLPGA--------------LSEEEIREALELDKISSHHWRI 152 (173)
T ss_pred EEECCCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcccccC--------------CCHHHHHHHhCccccCCCceEE
Confidence 99999999998886 555554332 268999999999998653 223334443322 123359
Q ss_pred EEcccCCCCCHHHHHHHHHH
Q psy15714 175 LECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~ 194 (205)
+++||++|.|++++|+++++
T Consensus 153 ~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 153 QPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EeccCCCCcCHHHHHHHHhc
Confidence 99999999999999999864
No 112
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=1.1e-28 Score=176.38 Aligned_cols=164 Identities=23% Similarity=0.355 Sum_probs=125.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
..+.+||+++|+.|||||||++++..+.+.. +.||.+... ..+.+++ +.+.+||++|+..++..|+.++++++++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 3678999999999999999999999876543 566655443 3455666 67899999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
||+|.++.+.+.+...++...+.... .++|++|++||+|+.......+......... +.... -..++.||
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~--------l~~~~-~~~v~~~s 157 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEK--------LKNKR-PWSVFSCS 157 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGG--------TTSSS-CEEEEEEB
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhh--------cccCC-ceEEEeee
Confidence 99999999999998866666666543 6899999999999876432222111111111 11122 23388999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15714 179 AKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~ 196 (205)
|.+|+|+.+.|+||.+++
T Consensus 158 a~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 158 AKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHhcC
Confidence 999999999999999875
No 113
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=5e-29 Score=177.02 Aligned_cols=157 Identities=20% Similarity=0.280 Sum_probs=119.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI 104 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 104 (205)
+|+++|++|+|||||++++.+. +...+.+|.+.. ...+..+ .+.+++||+||++.++..+..+++++|++|+|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999976 666677777654 2344444 47899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC-ceEEEcccCC
Q psy15714 105 GSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA-AEYLECSAKL 181 (205)
Q Consensus 105 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 181 (205)
+++.++.++. .|+..+.... .++|+++|+||+|+.......+..... ....+++..+. .++++|||++
T Consensus 77 s~~~s~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~--------~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 77 SDDDRVQEVK-EILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYL--------SLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CchhHHHHHH-HHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhc--------CcccccCCCCceEEEEEeEcee
Confidence 9999999987 6666665432 589999999999997754322211111 11223333332 3478899999
Q ss_pred C------CCHHHHHHHHHH
Q psy15714 182 N------EGLDQVFIAAVR 194 (205)
Q Consensus 182 ~------~~i~~~~~~i~~ 194 (205)
| .|+++.|+||..
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999974
No 114
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=3.4e-28 Score=176.69 Aligned_cols=150 Identities=23% Similarity=0.311 Sum_probs=121.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC-----CEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD-----NKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
+||+++|++|+|||||++++.++.+...+.+|++..+ .+.+.++ +..+.+.|||++|++.|+.++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999999888888887655 3344443 578999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhh--------------------CCCCCEEEEeeCcccccCchhhhhhhhhccccc
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHH--------------------CPKVPIILVGTKADLRSENKTIDKKKAAEVDLV 157 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 157 (205)
+|+|||++++.|++++. .|+..+... ..++|++|||||.|+...+.... ..
T Consensus 81 iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~--------~~ 151 (202)
T cd04102 81 IILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSG--------NL 151 (202)
T ss_pred EEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccch--------HH
Confidence 99999999999999997 899888653 14799999999999976541111 11
Q ss_pred cHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714 158 STSQGKKMRRKIKAAEYLECSAKLNE 183 (205)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~Sa~~~~ 183 (205)
.......++++.++. .++.++....
T Consensus 152 ~~~~~~~ia~~~~~~-~i~~~c~~~~ 176 (202)
T cd04102 152 VLTARGFVAEQGNAE-EINLNCTNGR 176 (202)
T ss_pred HhhHhhhHHHhcCCc-eEEEecCCcc
Confidence 222356678888888 7777877544
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=4.9e-28 Score=173.05 Aligned_cols=154 Identities=23% Similarity=0.302 Sum_probs=118.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
+.+||+++|++|+|||||++++..+.+.. +.++.+..+. .+.++ .+.+.+||+||++.+...+..+++.+|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999988765 4666665542 33344 47899999999999998888899999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH-HHHH----HHcCCceEE
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG-KKMR----RKIKAAEYL 175 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~ 175 (205)
+|+++++++......|...+.... .++|+++++||+|+... .+.++. +.+. +..+. +++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--------------~~~~~i~~~l~~~~~~~~~~-~~~ 154 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--------------MTPAEISESLGLTSIRDHTW-HIQ 154 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--------------CCHHHHHHHhCcccccCCce-EEE
Confidence 999999998887755555544332 57999999999998652 122221 1111 22223 489
Q ss_pred EcccCCCCCHHHHHHHHHH
Q psy15714 176 ECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~ 194 (205)
++||++|+|++++|++|.+
T Consensus 155 ~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 155 GCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ecccCCCCCHHHHHHHHhc
Confidence 9999999999999999864
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=1.5e-28 Score=173.50 Aligned_cols=152 Identities=22% Similarity=0.226 Sum_probs=114.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+|+++|++|+|||||++++.++.+ ...+.+|.+.... .+. ...+.+.+||+||++.++..+..+++.+|++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 589999999999999999998763 5566677654332 222 335789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhh---C-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH---HH-HcCCceEE
Q psy15714 104 IGSTSSYENILSKWYPELKHH---C-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM---RR-KIKAAEYL 175 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~---~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~ 175 (205)
++++.++..+. .|+..+... . .++|+++|+||+|+..... .++.... .. .....+++
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--------------~~~~~~~l~~~~~~~~~~~~~ 142 (162)
T cd04157 78 SSDRLRLVVVK-DELELLLNHPDIKHRRVPILFFANKMDLPDALT--------------AVKITQLLGLENIKDKPWHIF 142 (162)
T ss_pred CCcHHHHHHHH-HHHHHHHcCcccccCCCCEEEEEeCccccCCCC--------------HHHHHHHhCCccccCceEEEE
Confidence 99999888876 566655432 1 4799999999999875321 1111111 11 01112489
Q ss_pred EcccCCCCCHHHHHHHHHH
Q psy15714 176 ECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~ 194 (205)
++||++|.|++++|++|.+
T Consensus 143 ~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 143 ASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EeeCCCCCchHHHHHHHhc
Confidence 9999999999999999865
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=6.1e-28 Score=174.91 Aligned_cols=157 Identities=22% Similarity=0.344 Sum_probs=120.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+..||+++|++|+|||||++++.++.+. .+.+|.+... ..+.+++ ..+.+||+||+..++..+..+++.++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999988874 4556654432 3455555 678999999999998888888999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc----------
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI---------- 169 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 169 (205)
|+|+++..++......+...+.... .+.|+++++||+|+.. .+..++.+.+.+..
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--------------AVSEEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--------------CcCHHHHHHHhCcccccccccccc
Confidence 9999999888887633334333222 5799999999999864 23344444444321
Q ss_pred -----CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 170 -----KAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 170 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
...++++|||++|+|++++|+++.+.
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 12348999999999999999999875
No 118
>KOG4252|consensus
Probab=99.96 E-value=2.9e-30 Score=176.48 Aligned_cols=174 Identities=24% Similarity=0.441 Sum_probs=160.8
Q ss_pred cccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCc
Q psy15714 14 DVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSY 92 (205)
Q Consensus 14 ~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 92 (205)
.|........+|++|+|..++||||+|++|+.+-|...+..+++..+ ...+.+++..+.+.+||++|+++|..+...++
T Consensus 11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy 90 (246)
T KOG4252|consen 11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY 90 (246)
T ss_pred CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence 45566778999999999999999999999999999999999999888 56677777778899999999999999999999
Q ss_pred CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714 93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172 (205)
Q Consensus 93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (205)
+++.+.++||+.+|+.||+... .|...+......+|.++|-||+|+.++. +++..+++.+++.+...
T Consensus 91 rgaqa~vLVFSTTDr~SFea~~-~w~~kv~~e~~~IPtV~vqNKIDlveds------------~~~~~evE~lak~l~~R 157 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRYSFEATL-EWYNKVQKETERIPTVFVQNKIDLVEDS------------QMDKGEVEGLAKKLHKR 157 (246)
T ss_pred ccccceEEEEecccHHHHHHHH-HHHHHHHHHhccCCeEEeeccchhhHhh------------hcchHHHHHHHHHhhhh
Confidence 9999999999999999999988 8999999988999999999999999887 89999999999999988
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++.+|++...|+.++|..++..+..+.+
T Consensus 158 -lyRtSvked~NV~~vF~YLaeK~~q~~k 185 (246)
T KOG4252|consen 158 -LYRTSVKEDFNVMHVFAYLAEKLTQQKK 185 (246)
T ss_pred -hhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877544
No 119
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=181.96 Aligned_cols=151 Identities=21% Similarity=0.308 Sum_probs=124.5
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC-------------CEEEEEEEEEcCCC
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD-------------NKTYDVTLWDTAGQ 81 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~ 81 (205)
....+...+||+++|..|+|||||+++|.++.+...+.+|++..+ .+.+.++ +..+.++|||++|+
T Consensus 14 ~~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq 93 (334)
T PLN00023 14 NGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH 93 (334)
T ss_pred ccCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence 355677889999999999999999999999999888889987765 3455554 35688999999999
Q ss_pred cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-------------CCCCEEEEeeCcccccCchhhhh
Q psy15714 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-------------PKVPIILVGTKADLRSENKTIDK 148 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~Dl~~~~~~~~~ 148 (205)
+.|+.++..++++++++|+|||++++.+++++. .|+..+.... .++|++||+||+||...+...
T Consensus 94 ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r-- 170 (334)
T PLN00023 94 ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTR-- 170 (334)
T ss_pred hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccc--
Confidence 999999999999999999999999999999997 8999998752 258999999999996542100
Q ss_pred hhhhccccccHHHHHHHHHHcCCce
Q psy15714 149 KKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
....+..++++++++..++.+
T Consensus 171 ----~~s~~~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 171 ----GSSGNLVDAARQWVEKQGLLP 191 (334)
T ss_pred ----ccccccHHHHHHHHHHcCCCc
Confidence 000246789999999988654
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=7.8e-28 Score=169.41 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=113.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI 104 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 104 (205)
||+++|++++|||||++++..+.+.. +.+|.+..+. .+.. ....+++||+||++.++..++.+++.+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 68999999999999999998887753 4555544332 2333 347899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH-HH----HHHcCCceEEEcc
Q psy15714 105 GSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK-KM----RRKIKAAEYLECS 178 (205)
Q Consensus 105 ~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~S 178 (205)
+++.++......|...+.... .+.|+++|+||+|+.... ...+.. .+ .+..+ .+++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~-~~~~~~S 141 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--------------SEAEISEKLGLSELKDRT-WSIFKTS 141 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--------------CHHHHHHHhCccccCCCc-EEEEEee
Confidence 999888776645555554332 579999999999986532 111111 11 11112 2499999
Q ss_pred cCCCCCHHHHHHHHHH
Q psy15714 179 AKLNEGLDQVFIAAVR 194 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~ 194 (205)
|++|.|++++|+++.+
T Consensus 142 a~~~~gi~~l~~~l~~ 157 (158)
T cd04151 142 AIKGEGLDEGMDWLVN 157 (158)
T ss_pred ccCCCCHHHHHHHHhc
Confidence 9999999999999875
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=1.4e-27 Score=168.35 Aligned_cols=151 Identities=25% Similarity=0.337 Sum_probs=113.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI 104 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 104 (205)
||+++|++|+|||||++++.++.+... .+|.+..+ ..+.. +..+.+.+||+||++.++..+..++..+|++|+|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 589999999999999999999987543 55554332 22333 3457899999999999988888889999999999999
Q ss_pred CCcchHHHHHHHHHHHH-hhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH------HHHHHcCCceEEE
Q psy15714 105 GSTSSYENILSKWYPEL-KHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK------KMRRKIKAAEYLE 176 (205)
Q Consensus 105 ~~~~s~~~~~~~~~~~~-~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 176 (205)
+++.++..+. .|+..+ .... .+.|+++|+||+|+.... ..++.. .+....+ .++++
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~-~~~~~ 141 (160)
T cd04156 78 SDEARLDESQ-KELKHILKNEHIKGVPVVLLANKQDLPGAL--------------TAEEITRRFKLKKYCSDRD-WYVQP 141 (160)
T ss_pred CcHHHHHHHH-HHHHHHHhchhhcCCCEEEEEECcccccCc--------------CHHHHHHHcCCcccCCCCc-EEEEe
Confidence 9999888887 444444 3322 589999999999986421 111111 1111122 24899
Q ss_pred cccCCCCCHHHHHHHHHH
Q psy15714 177 CSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~ 194 (205)
+||++|+|++++|++|.+
T Consensus 142 ~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 142 CSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cccccCCChHHHHHHHhc
Confidence 999999999999999864
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=2.7e-27 Score=170.63 Aligned_cols=168 Identities=18% Similarity=0.246 Sum_probs=117.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+.++|+++|.+|+|||||++++.++.+.. +.+|..... ..+.+++ +++.+||+||+..++..+..++.++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS-EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 556899999999999999999999887643 344443322 2334444 779999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhh-CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
|+|++++.++......+...+... ..+.|+++|+||+|+.......+..+..+........ .....+...+++|||
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~---~~~~~~~~~i~~~Sa 167 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSK---GKVGVRPLEVFMCSV 167 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccc---cccCCceeEEEEeec
Confidence 999999998888774343333322 2589999999999986532221111111110000000 000113444899999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy15714 180 KLNEGLDQVFIAAVRS 195 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~ 195 (205)
++++|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 123
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=3.5e-27 Score=167.46 Aligned_cols=152 Identities=23% Similarity=0.277 Sum_probs=112.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC------CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKF------PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
+|+++|++|+|||||++++..... ...+.+|.+... ..+.+++ ..+.+||+||++.+...+..++..+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999876432 223344443333 2344444 7899999999999998888899999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc------C
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI------K 170 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 170 (205)
++|+|+++..++.... .|+..+.+.. .++|+++++||+|+... ...++...+.+.. .
T Consensus 78 v~vvd~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~ 142 (167)
T cd04160 78 IYVIDSTDRERFEESK-SALEKVLRNEALEGVPLLILANKQDLPDA--------------LSVEEIKEVFQDKAEEIGRR 142 (167)
T ss_pred EEEEECchHHHHHHHH-HHHHHHHhChhhcCCCEEEEEEccccccC--------------CCHHHHHHHhccccccccCC
Confidence 9999999998888876 4555444322 58999999999998653 2223333332221 2
Q ss_pred CceEEEcccCCCCCHHHHHHHHHH
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~ 194 (205)
..+++++||++|+|+++++++|..
T Consensus 143 ~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 143 DCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred ceEEEEeeCCCCcCHHHHHHHHhc
Confidence 235999999999999999999864
No 124
>KOG0070|consensus
Probab=99.95 E-value=2.5e-27 Score=163.67 Aligned_cols=163 Identities=20% Similarity=0.219 Sum_probs=134.1
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
-..++.+|+++|..+|||||+++++..+++... .||++..++ .+.+. ++.|++||.+|+++++.+|..++++.+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 457889999999999999999999999987655 888887764 34444 48899999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc----CCce
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI----KAAE 173 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 173 (205)
|||+|.+|++.+.++..++..++.... .++|+++++||.|+...-. ..+..+...-. ...+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--------------~~ei~~~L~l~~l~~~~w~ 154 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--------------AAEITNKLGLHSLRSRNWH 154 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--------------HHHHHhHhhhhccCCCCcE
Confidence 999999999999999988888887665 6899999999999987532 22222211111 3344
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+..|+|.+|+|+.+.++|+.+.+.+.
T Consensus 155 iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 155 IQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred EeeccccccccHHHHHHHHHHHHhcc
Confidence 77899999999999999999987653
No 125
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.3e-26 Score=163.06 Aligned_cols=151 Identities=22% Similarity=0.279 Sum_probs=114.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI 104 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 104 (205)
||+++|.+|+|||||++++.++.+ ..+.++.+... ..+.+. .+.+.+||+||+..+...+..++..+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999884 34455554433 233344 37899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH----cCCceEEEcc
Q psy15714 105 GSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK----IKAAEYLECS 178 (205)
Q Consensus 105 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S 178 (205)
+++.++.... .|+..+.... .+.|+++|+||+|+.... ..++....... ....+++++|
T Consensus 77 ~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~S 141 (158)
T cd00878 77 SDRERIEEAK-EELHKLLNEEELKGVPLLIFANKQDLPGAL--------------SVSELIEKLGLEKILGRRWHIQPCS 141 (158)
T ss_pred CCHHHHHHHH-HHHHHHHhCcccCCCcEEEEeeccCCcccc--------------CHHHHHHhhChhhccCCcEEEEEee
Confidence 9999999887 4544443322 589999999999987642 12222222211 1234599999
Q ss_pred cCCCCCHHHHHHHHHH
Q psy15714 179 AKLNEGLDQVFIAAVR 194 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~ 194 (205)
|++|.|++++|++|..
T Consensus 142 a~~~~gv~~~~~~l~~ 157 (158)
T cd00878 142 AVTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCCHHHHHHHHhh
Confidence 9999999999999875
No 126
>KOG0073|consensus
Probab=99.95 E-value=1e-26 Score=156.76 Aligned_cols=166 Identities=14% Similarity=0.204 Sum_probs=130.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
..++++|+++|..|+||||++++|.+.. .+...||.+... +...+++ +++++||.+|+...++.|+.||...|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I-ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI-KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee-EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 4569999999999999999999998877 445555554443 3445555 78999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
+|+|.+|+..+++-..++-..+.... ...|++|++||.|+...-..... ...-...++++..+.. ++.||
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i--------~~~~~L~~l~ks~~~~-l~~cs 159 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEI--------SKALDLEELAKSHHWR-LVKCS 159 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHH--------HHhhCHHHhccccCce-EEEEe
Confidence 99999999998887766655554332 57999999999999854321110 0111245566667777 99999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15714 179 AKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~ 198 (205)
|.+|+++.+-++|+...+..
T Consensus 160 ~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 99999999999999998876
No 127
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=2.5e-26 Score=164.02 Aligned_cols=139 Identities=26% Similarity=0.451 Sum_probs=122.5
Q ss_pred CCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhh
Q psy15714 46 NKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH 124 (205)
Q Consensus 46 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 124 (205)
+.|.+.+.+|++..+ .+.+.+++..+++.|||++|+++++.++..+++++|++|+|||++++.+|+.+. .|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHh
Confidence 467788899998766 566788999999999999999999999999999999999999999999999987 798887665
Q ss_pred C-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 125 C-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 125 ~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
. +++|+++|+||+|+...+ .++.+++..+++.++.. ++++||++|+|++++|++|++.+.+
T Consensus 82 ~~~~~piilVgNK~DL~~~~------------~v~~~e~~~~~~~~~~~-~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLR------------KVTYEEGMQKAQEYNTM-FHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cCCCCeEEEEEECccccccc------------CCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4 689999999999997543 67788888888888776 9999999999999999999998865
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=7.4e-26 Score=158.82 Aligned_cols=156 Identities=20% Similarity=0.266 Sum_probs=116.0
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECC
Q psy15714 26 VTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIG 105 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 105 (205)
|+++|++|+|||||++++.+.++...+.++.+..+. .+..++ +.+.+||+||+..++..+..++..+|++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 799999999999999999999998888888766553 233444 78999999999999998889999999999999999
Q ss_pred CcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCC
Q psy15714 106 STSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG 184 (205)
Q Consensus 106 ~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 184 (205)
+..++......|...+.... .++|+++|+||+|+.......... ............ .+++++||+++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~Sa~~~~g 148 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELI---------EQMNLKSITDRE-VSCYSISCKEKTN 148 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHH---------HHhCcccccCCc-eEEEEEEeccCCC
Confidence 99888877633333333222 589999999999986542110000 000000011112 3489999999999
Q ss_pred HHHHHHHHHH
Q psy15714 185 LDQVFIAAVR 194 (205)
Q Consensus 185 i~~~~~~i~~ 194 (205)
++++|+++.+
T Consensus 149 i~~l~~~l~~ 158 (159)
T cd04159 149 IDIVLDWLIK 158 (159)
T ss_pred hHHHHHHHhh
Confidence 9999999875
No 129
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.94 E-value=3.4e-25 Score=163.95 Aligned_cols=176 Identities=31% Similarity=0.483 Sum_probs=138.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
.+||+++|++|+|||||+++|.++.+...+.++.+..+. ......+..+++.+||++|+++|+.++..++.++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 389999999999999999999999999999999877774 3444455588999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH---cCCceEEEc
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK---IKAAEYLEC 177 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 177 (205)
||..+..++.++...|...+.... .+.|+++++||+|+...............+............. .... ++++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 163 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPA-LLET 163 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccc-eeEe
Confidence 999998888888889999998887 4799999999999987754322111110012222222222222 2344 8999
Q ss_pred ccC--CCCCHHHHHHHHHHHHHhh
Q psy15714 178 SAK--LNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 178 Sa~--~~~~i~~~~~~i~~~~~~~ 199 (205)
|++ .+.+++++|..+.+.+...
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHh
Confidence 999 9999999999999988653
No 130
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=2.2e-25 Score=159.08 Aligned_cols=153 Identities=21% Similarity=0.346 Sum_probs=114.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
...+||+++|++|+|||||++++.+..+.. +.++.+... ..+..++ ..+.+||+||+..+...+..+++.+|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 447999999999999999999999886643 345544322 2444555 678999999999888888888999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC-------c
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA-------A 172 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 172 (205)
|+|+++..++......|...+.... .++|+++++||+|+..... .+ .+.+..+. .
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~~---~i~~~l~~~~~~~~~~ 150 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--------------AE---EIAEALNLHDLRDRTW 150 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--------------HH---HHHHHcCCcccCCCeE
Confidence 9999998888887644444444322 5799999999999865321 11 11122221 2
Q ss_pred eEEEcccCCCCCHHHHHHHHHH
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~ 194 (205)
+++++||++|+|++++|+||.+
T Consensus 151 ~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 151 HIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEEeECCCCCCHHHHHHHHhc
Confidence 4789999999999999999975
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=3.3e-25 Score=157.43 Aligned_cols=154 Identities=25% Similarity=0.196 Sum_probs=104.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-CcCccccccceeEEECCEEEEEEEEEcCCCcccccc---------cccCcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTD-YVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL---------RPMSYPN 94 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------~~~~~~~ 94 (205)
+|+++|.+|+|||||++++.+..+... +..++....... +.....++.+||+||....... .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 799999999999999999999876422 111111111111 2223478999999997431110 0011123
Q ss_pred CcEEEEEEECCCcchH--HHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714 95 TDCFLLCFSIGSTSSY--ENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (205)
.|++++|+|++++.++ +... .|+..+.....+.|+++|+||+|+.... .+.. ...+.+... .
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~~~~------------~~~~--~~~~~~~~~-~ 143 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLLTFE------------DLSE--IEEEEELEG-E 143 (168)
T ss_pred cCcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccCchh------------hHHH--HHHhhhhcc-C
Confidence 6899999999987653 4544 6777776655689999999999997543 1111 334444433 4
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
+++++||++|.|++++|+++.+.+
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 144 EVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ceEEEEecccCCHHHHHHHHHHHh
Confidence 499999999999999999998875
No 132
>KOG0075|consensus
Probab=99.94 E-value=4.5e-27 Score=155.74 Aligned_cols=164 Identities=18% Similarity=0.258 Sum_probs=134.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
.++++.++|..++|||||++....+.+.+...||.+.... .+....+.+.+||+||+..|++.|+.|++.+++++||
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 4678999999999999999999999998888888877753 4455568899999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
+|+.+++.+....+++.+.+.+.. ..+|++|+|||.|+...-.... +....+..-....... +|.+|++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~---------li~rmgL~sitdREvc-C~siSck 165 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIA---------LIERMGLSSITDREVC-CFSISCK 165 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHH---------HHHHhCccccccceEE-EEEEEEc
Confidence 999999999988889999998877 8999999999999987532211 1111112222233445 8999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy15714 181 LNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~~~ 198 (205)
...||+-+.+|+++....
T Consensus 166 e~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 166 EKVNIDITLDWLIEHSKS 183 (186)
T ss_pred CCccHHHHHHHHHHHhhh
Confidence 999999999999987644
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=2.4e-25 Score=159.75 Aligned_cols=154 Identities=20% Similarity=0.219 Sum_probs=110.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-------CCCCCcCcc------cccc-cee--EEE---CCEEEEEEEEEcCCCcccc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK-------FPTDYVPTV------FDNY-PDT--ITV---DNKTYDVTLWDTAGQEDYE 85 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~-------~~~~~~~t~------~~~~-~~~--~~~---~~~~~~~~i~D~~g~~~~~ 85 (205)
+|+++|.+++|||||+++|.+.. +...+.++. +..+ ... ..+ ++..+.+.+||+||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998732 222223322 1111 111 222 5667889999999999998
Q ss_pred cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714 86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (205)
..+..++..+|++|+|||+++..+..... .|.... . .++|+++|+||+|+.... .......+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~-~~~~~~-~--~~~~iiiv~NK~Dl~~~~--------------~~~~~~~~ 143 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLA-NFYLAL-E--NNLEIIPVINKIDLPSAD--------------PERVKQQI 143 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHH-HHHHHH-H--cCCCEEEEEECCCCCcCC--------------HHHHHHHH
Confidence 88888999999999999999877766654 453322 2 378999999999986432 11222344
Q ss_pred HHHcCCc--eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 166 RRKIKAA--EYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 166 ~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
++.++.. .++++||++|+|++++|+++.+.+
T Consensus 144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 4544442 489999999999999999998764
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=9.9e-25 Score=152.78 Aligned_cols=157 Identities=38% Similarity=0.531 Sum_probs=123.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
.+||+++|.+|+|||||++++....+...+.++....+ ...+..++..+.+.+||+||+..+...+..++..++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999987666666665555 33466777778899999999999988888888999999999
Q ss_pred EECCCc-chHHHHHHHHHHHHhhhCC-CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 102 FSIGST-SSYENILSKWYPELKHHCP-KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 102 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
+|.... .++......|...+..... +.|+++++||+|+.... . ..+........+..+++++||
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~~~~~~~sa 146 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-------------L-KTHVAFLFAKLNGEPIIPLSA 146 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-------------h-hHHHHHHHhhccCCceEEeec
Confidence 998877 6676665467676666554 89999999999997642 1 223333333444445999999
Q ss_pred CCCCCHHHHHHHHH
Q psy15714 180 KLNEGLDQVFIAAV 193 (205)
Q Consensus 180 ~~~~~i~~~~~~i~ 193 (205)
..+.|++++|++|.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999998863
No 135
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=1.1e-25 Score=155.68 Aligned_cols=135 Identities=21% Similarity=0.182 Sum_probs=101.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCc-----ccccccccCcCCCcEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE-----DYERLRPMSYPNTDCFL 99 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~i 99 (205)
||+++|++|+|||||++++.+..+. +.+|.. +.+. -.+||+||.. .++.+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999988652 233321 1221 2689999972 3444443 478999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
+|||++++.++... .|...+ ..|+++|+||+|+... ....++++.+++..+..+++++||
T Consensus 68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa 127 (142)
T TIGR02528 68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEA-------------DVDIERAKELLETAGAEPIFEISS 127 (142)
T ss_pred EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCc-------------ccCHHHHHHHHHHcCCCcEEEEec
Confidence 99999999887652 454432 3499999999998642 344566777777777756999999
Q ss_pred CCCCCHHHHHHHHH
Q psy15714 180 KLNEGLDQVFIAAV 193 (205)
Q Consensus 180 ~~~~~i~~~~~~i~ 193 (205)
++|.|++++|+++.
T Consensus 128 ~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 128 VDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999874
No 136
>KOG0071|consensus
Probab=99.93 E-value=1.1e-25 Score=148.06 Aligned_cols=163 Identities=19% Similarity=0.228 Sum_probs=129.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.++++|+.+|..++||||++.++.-+.. ....||.+..+. .+++ ++++|.+||.+|+++.|.+|++++.+..++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve-tVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE-EEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 3589999999999999999999998875 445677666543 4444 44889999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
|+|..++...+++.+++...+.... .+.|++|.+||.|++......+.....+ .+. ++..... +..+||
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le--------Le~-~r~~~W~-vqp~~a 160 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE--------LER-IRDRNWY-VQPSCA 160 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc--------ccc-ccCCccE-eecccc
Confidence 9999999999999989999887765 7899999999999998654322221111 111 2222333 788999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy15714 180 KLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~ 197 (205)
.+|+|+.|-|.|+++.+.
T Consensus 161 ~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred ccchhHHHHHHHHHhhcc
Confidence 999999999999998754
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=1.4e-24 Score=154.39 Aligned_cols=156 Identities=22% Similarity=0.177 Sum_probs=106.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEECCEEEEEEEEEcCCCcc----cccccccC---cCCCc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----YERLRPMS---YPNTD 96 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~ 96 (205)
+|+++|.+|+|||||++++.+..... ....+........+.+++. ..+.+||+||... .+.+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 68999999999999999999765421 1111111111112333332 4799999999632 21222222 44699
Q ss_pred EEEEEEECCCc-chHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714 97 CFLLCFSIGST-SSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172 (205)
Q Consensus 97 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (205)
++++|+|++++ .+++.+. .|...+.... .+.|+++|+||+|+.... . ..+....+.......
T Consensus 81 ~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~------------~-~~~~~~~~~~~~~~~ 146 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEE------------E-LFELLKELLKELWGK 146 (170)
T ss_pred EEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCch------------h-hHHHHHHHHhhCCCC
Confidence 99999999999 7888876 7888877654 479999999999987643 2 223344444443233
Q ss_pred eEEEcccCCCCCHHHHHHHHHHH
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
+++++||+++.|++++|+++.+.
T Consensus 147 ~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 147 PVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CEEEEecCCCCCHHHHHHHHHhh
Confidence 48999999999999999998864
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=3.7e-24 Score=151.27 Aligned_cols=156 Identities=17% Similarity=0.107 Sum_probs=100.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC---CCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK---FPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~---~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.|+++|.+++|||||++++.+.. +...+.++..... .....+.+ ...+.+||+||++++.......+..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 68999999999999999998643 3222222211111 12333331 3579999999999887666667889999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc--CCceEEEcc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI--KAAEYLECS 178 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S 178 (205)
|+|+++....+. . ..+..+... ...|+++++||+|+...... ....++..+..+.. ...+++++|
T Consensus 81 V~d~~~~~~~~~-~-~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~S 147 (164)
T cd04171 81 VVAADEGIMPQT-R-EHLEILELL-GIKRGLVVLTKADLVDEDWL----------ELVEEEIRELLAGTFLADAPIFPVS 147 (164)
T ss_pred EEECCCCccHhH-H-HHHHHHHHh-CCCcEEEEEECccccCHHHH----------HHHHHHHHHHHHhcCcCCCcEEEEe
Confidence 999987321111 1 122223222 22499999999999753210 11122333333332 234599999
Q ss_pred cCCCCCHHHHHHHHHH
Q psy15714 179 AKLNEGLDQVFIAAVR 194 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~ 194 (205)
|++++|++++|+.+.+
T Consensus 148 a~~~~~v~~l~~~l~~ 163 (164)
T cd04171 148 AVTGEGIEELKEYLDE 163 (164)
T ss_pred CCCCcCHHHHHHHHhh
Confidence 9999999999998754
No 139
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=9e-24 Score=164.11 Aligned_cols=165 Identities=22% Similarity=0.161 Sum_probs=116.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcc----cccc---cccCc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----YERL---RPMSY 92 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~ 92 (205)
+.-..|+++|.|+||||||++++...+.. ..+..|+.......+.+. ....+.+||+||..+ ...+ +-..+
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhi 234 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHI 234 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence 34457899999999999999999976532 333444333333334442 124589999999642 1112 22245
Q ss_pred CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714 93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI 169 (205)
Q Consensus 93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (205)
+.++++++|+|+++.++++++. .|...+..+. .+.|+++|+||+|+.... .+..++.+.+.+..
T Consensus 235 e~a~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~------------~~~~~~~~~~~~~~ 301 (335)
T PRK12299 235 ERTRLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLLDEE------------EEREKRAALELAAL 301 (335)
T ss_pred hhcCEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccCCch------------hHHHHHHHHHHHhc
Confidence 6799999999999888888876 8988887765 378999999999987543 22233344444445
Q ss_pred CCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
+.. ++++||++++|++++|+++.+.+....
T Consensus 302 ~~~-i~~iSAktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 302 GGP-VFLISAVTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred CCC-EEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence 554 999999999999999999998876543
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.91 E-value=7.4e-24 Score=155.19 Aligned_cols=153 Identities=24% Similarity=0.230 Sum_probs=107.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-C-CcCccccccceeEEECCEEEEEEEEEcCCCcc---------cccccc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPT-D-YVPTVFDNYPDTITVDNKTYDVTLWDTAGQED---------YERLRP 89 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~ 89 (205)
...++|+++|++|+|||||++++.+..+.. . +.++. ......+.+++. ..+.+||+||... +....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATL-DPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceec-cceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 445899999999999999999999886432 1 22222 222223334442 3799999999732 22111
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK 168 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (205)
..+..+|++++|+|++++.+..... .|...+.... .+.|+++|+||+|+..... .. .....
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~-~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~------------~~-----~~~~~ 177 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIE-TVEKVLKELGAEDIPMILVLNKIDLLDDEE------------LE-----ERLEA 177 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHH-HHHHHHHHcCcCCCCEEEEEEccccCChHH------------HH-----HHhhc
Confidence 1356899999999999988887765 6777776654 5799999999999866431 11 22333
Q ss_pred cCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 169 IKAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
.. .+++++||+++.|++++|++|.+.
T Consensus 178 ~~-~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 178 GR-PDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CC-CceEEEEcCCCCCHHHHHHHHHhh
Confidence 33 349999999999999999998765
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=2.7e-24 Score=157.17 Aligned_cols=158 Identities=19% Similarity=0.151 Sum_probs=104.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCC-----------Cccccccc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG-----------QEDYERLR 88 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~ 88 (205)
+...++|+++|.+|+|||||++++.+..+.....+..... ...+... .+.+||+|| ++.++..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 3456899999999999999999999887654433332211 2222222 589999999 45565554
Q ss_pred ccCc----CCCcEEEEEEECCCcchHHH---------HHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccc
Q psy15714 89 PMSY----PNTDCFLLCFSIGSTSSYEN---------ILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVD 155 (205)
Q Consensus 89 ~~~~----~~~~~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 155 (205)
..++ ..++++++|+|.++...+.. ....+...+.. .++|+++|+||+|+....
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~------------ 146 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR------------ 146 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH------------
Confidence 4443 45678889998765422210 01123333333 389999999999986532
Q ss_pred cccHHHHHHHHHHcCC--------ceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 156 LVSTSQGKKMRRKIKA--------AEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 156 ~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
.+...++++.++. .+++++||++| |++++|++|.+.+....
T Consensus 147 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 147 ---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred ---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 2233444444443 13799999999 99999999998865543
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=1.8e-23 Score=148.39 Aligned_cols=158 Identities=22% Similarity=0.219 Sum_probs=107.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
.|+++|.+|+|||||++++..+.+...+.++..... ...+..+ +....+.+||+||+..|...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999999887654333322222 1223332 13467999999999999888888889999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH----Hc-CCceEEEc
Q psy15714 103 SIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR----KI-KAAEYLEC 177 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~ 177 (205)
|+++....... ..+..+... ++|+++|+||+|+...... .+ .++...+.. .. ...+++++
T Consensus 82 d~~~~~~~~~~--~~~~~~~~~--~~p~ivv~NK~Dl~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T cd01887 82 AADDGVMPQTI--EAIKLAKAA--NVPFIVALNKIDKPNANPE----------RV-KNELSELGLQGEDEWGGDVQIVPT 146 (168)
T ss_pred ECCCCccHHHH--HHHHHHHHc--CCCEEEEEEceecccccHH----------HH-HHHHHHhhccccccccCcCcEEEe
Confidence 99875432222 222334433 7999999999998743210 00 011111110 11 12349999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy15714 178 SAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~ 197 (205)
||++++|++++++++.+...
T Consensus 147 Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 147 SAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ecccCCCHHHHHHHHHHhhh
Confidence 99999999999999987653
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=5.7e-23 Score=142.60 Aligned_cols=153 Identities=37% Similarity=0.604 Sum_probs=115.0
Q ss_pred EECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCC
Q psy15714 28 TVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGS 106 (205)
Q Consensus 28 v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 106 (205)
++|++|+|||||++++.+... .....++............+....+.+||+||...+.......++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998887 4555555533334555666678899999999998888777788999999999999999
Q ss_pred cchHHHHHHHH--HHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCC
Q psy15714 107 TSSYENILSKW--YPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG 184 (205)
Q Consensus 107 ~~s~~~~~~~~--~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 184 (205)
+.+..... .| .........++|+++++||+|+..... ................+++++|+..+.|
T Consensus 81 ~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 147 (157)
T cd00882 81 RESFENVK-EWLLLILINKEGENIPIILVGNKIDLPEERV------------VSEEELAEQLAKELGVPYFETSAKTGEN 147 (157)
T ss_pred HHHHHHHH-HHHHHHHHhhccCCCcEEEEEeccccccccc------------hHHHHHHHHHHhhcCCcEEEEecCCCCC
Confidence 98888876 44 222233337999999999999876531 1111112222333445599999999999
Q ss_pred HHHHHHHHH
Q psy15714 185 LDQVFIAAV 193 (205)
Q Consensus 185 i~~~~~~i~ 193 (205)
+++++++|.
T Consensus 148 i~~~~~~l~ 156 (157)
T cd00882 148 VEELFEELA 156 (157)
T ss_pred hHHHHHHHh
Confidence 999999986
No 144
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=1.1e-23 Score=141.25 Aligned_cols=114 Identities=30% Similarity=0.522 Sum_probs=89.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
||+|+|++|+|||||+++|.+..+. ....+..+..+ ............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999999876 12222223333 23455667777799999999998888777779999999999
Q ss_pred EECCCcchHHHHHH--HHHHHHhhhCCCCCEEEEeeCcc
Q psy15714 102 FSIGSTSSYENILS--KWYPELKHHCPKVPIILVGTKAD 138 (205)
Q Consensus 102 ~d~~~~~s~~~~~~--~~~~~~~~~~~~~p~ivv~nK~D 138 (205)
||++++.++..+.. .|+..+.....++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999999753 36777777667899999999998
No 145
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=2.3e-23 Score=146.06 Aligned_cols=146 Identities=21% Similarity=0.183 Sum_probs=104.0
Q ss_pred EEECCCCCCHHHHHHHHhcCC--CCCCCcCccccccceeEEECCEEEEEEEEEcCCCccccc--------ccccCcCCCc
Q psy15714 27 TTVGDGMVGKTCLLITHTENK--FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER--------LRPMSYPNTD 96 (205)
Q Consensus 27 ~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~ 96 (205)
+++|.+|+|||||++++.+.. +.....+++..........++ ..+.+||+||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999875 233334443333334445555 5799999999887544 2334678899
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
++++|+|+.+..+.... .+...+... +.|+++|+||+|+..... . .......+..++++
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~------------~-----~~~~~~~~~~~~~~ 137 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED------------E-----AAEFYSLGFGEPIP 137 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH------------H-----HHHHHhcCCCCeEE
Confidence 99999999876544442 344444444 699999999999876431 1 22233455545899
Q ss_pred cccCCCCCHHHHHHHHHHH
Q psy15714 177 CSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~ 195 (205)
+|+++++|++++|+++.+.
T Consensus 138 ~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 138 ISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred EecccCCCHHHHHHHHHhh
Confidence 9999999999999999875
No 146
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=3.6e-23 Score=157.51 Aligned_cols=154 Identities=16% Similarity=0.103 Sum_probs=108.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccc-cc-------cccCcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE-RL-------RPMSYPN 94 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~-------~~~~~~~ 94 (205)
+|+++|.+|+|||||+|++.+.++. .....|+..........++ .++.+|||||..... .+ ....+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999998753 2333444433222222233 468999999975421 11 2345789
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY 174 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (205)
+|++++|+|+++..+.. ..++..+... +.|+++|+||+|+.... ...+....+....+..++
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~v 141 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKD-------------KLLPLIDKYAILEDFKDI 141 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHH-------------HHHHHHHHHHhhcCCCce
Confidence 99999999999876654 2555666554 89999999999986432 112234444444555458
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 175 LECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
+++||++|.|++++++++.+.+..
T Consensus 142 ~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 142 VPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred EEEecCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999999887644
No 147
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=5.2e-23 Score=167.64 Aligned_cols=162 Identities=20% Similarity=0.182 Sum_probs=114.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCc----------cccccc-
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE----------DYERLR- 88 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~- 88 (205)
..+||+++|.+++|||||++++++... ......++.+.....+.+++.. +.+|||||.. .|..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998864 3344444444445566677754 6799999952 232222
Q ss_pred ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714 89 PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK 168 (205)
Q Consensus 89 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (205)
..+++.+|++++|||+++..++.+. .++..+... +.|+++|+||+|+...... ....++.......
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~~--~~piIiV~NK~Dl~~~~~~----------~~~~~~i~~~l~~ 353 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIEA--GRALVLAFNKWDLVDEDRR----------YYLEREIDRELAQ 353 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChhHH----------HHHHHHHHHhccc
Confidence 2357899999999999999888876 455555544 8999999999999753210 1111222222222
Q ss_pred cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 169 IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
....+++++||++|.|++++|..+.+.+...
T Consensus 354 ~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 354 VPWAPRVNISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3334589999999999999999998876543
No 148
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=1.4e-22 Score=158.48 Aligned_cols=158 Identities=22% Similarity=0.217 Sum_probs=109.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCCCcc-cccccc-------
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED-YERLRP------- 89 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~------- 89 (205)
..+.++|+++|.+|+|||||+++|.+.++.. ....++.......+..++ .++.+|||||... +..+..
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 3567899999999999999999999888742 222222222233455555 4689999999743 222211
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI 169 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (205)
..+..+|++++|+|..+ ++......|+..+... +.|.++|+||+|+... . ..+...+....
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~--~~~~~~~l~~~ 187 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------Y--LNDIKAFLTEN 187 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------c--HHHHHHHHHhc
Confidence 24679999999999765 4445443566666554 6788899999998542 1 23344444443
Q ss_pred C-CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 170 K-AAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 170 ~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
. ...++++||++|.|++++|+++.+.+..
T Consensus 188 ~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 188 HPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 3 3458999999999999999999887654
No 149
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=1.4e-22 Score=142.38 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=105.0
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCCCcC-ccccccceeEEECCEEEEEEEEEcCCCcccccc------cccCc--CCCcEE
Q psy15714 28 TVGDGMVGKTCLLITHTENKFPTDYVP-TVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL------RPMSY--PNTDCF 98 (205)
Q Consensus 28 v~G~~~~GKstli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~ 98 (205)
++|.+|+|||||++++.+..+.....+ +........+.+++ ..+.+||+||+..+... ...++ +.+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998864332222 22333344566666 46899999998776542 33444 489999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
++|+|+++..+.. .|...+... ++|+++|+||+|+.... .+. .+...+++.++.. ++++|
T Consensus 79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~------------~~~-~~~~~~~~~~~~~-~~~iS 138 (158)
T cd01879 79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKR------------GIK-IDLDKLSELLGVP-VVPTS 138 (158)
T ss_pred EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhcccc------------cch-hhHHHHHHhhCCC-eEEEE
Confidence 9999998765432 344444444 79999999999997643 222 2234566666665 99999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15714 179 AKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~ 196 (205)
|.++.|++++|+++.+.+
T Consensus 139 a~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 139 ARKGEGIDELKDAIAELA 156 (158)
T ss_pred ccCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 150
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=4.3e-23 Score=149.97 Aligned_cols=147 Identities=15% Similarity=0.037 Sum_probs=101.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc--CCCCCCCc------------Ccccccc-ceeEEECCEEEEEEEEEcCCCcccccccc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE--NKFPTDYV------------PTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRP 89 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 89 (205)
+|+++|.+++|||||+++|.. +.+...+. .+.+... .....+......+.+||+||+++|...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 55544321 1122222 22333445567899999999999998888
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH-
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK- 168 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 168 (205)
.+++.+|++++|||+++.. ..... .|+..+... ++|+++|+||+|+...+. ....++...+...
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~-~~~~~~~~~--~~p~iiv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~ 148 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTR-FVLKKALEL--GLKPIVVINKIDRPDARP-----------EEVVDEVFDLFIEL 148 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHH-HHHHHHHHc--CCCEEEEEECCCCCCCCH-----------HHHHHHHHHHHHHh
Confidence 8999999999999998753 22222 344444333 899999999999975431 1122333333322
Q ss_pred ------cCCceEEEcccCCCCCHHH
Q psy15714 169 ------IKAAEYLECSAKLNEGLDQ 187 (205)
Q Consensus 169 ------~~~~~~~~~Sa~~~~~i~~ 187 (205)
.+. +++++||++|.|+.+
T Consensus 149 ~~~~~~~~~-~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 149 GATEEQLDF-PVLYASAKNGWASLN 172 (194)
T ss_pred CCccccCcc-CEEEeehhccccccc
Confidence 244 489999999988743
No 151
>KOG3883|consensus
Probab=99.90 E-value=1.9e-22 Score=134.78 Aligned_cols=170 Identities=24% Similarity=0.294 Sum_probs=140.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEE-CCEEEEEEEEEcCCCccc-ccccccCcCCC
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITV-DNKTYDVTLWDTAGQEDY-ERLRPMSYPNT 95 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~ 95 (205)
..+..|++|+|..++|||.+++.+.-+.. ...+.+|+++.|...+.- +|..=.+.++||.|-..+ -.+.+++++-+
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 35678999999999999999998886654 345677888887554443 344557999999998777 56678899999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
|++++||+..|++||+.+. .+...+.+.- ..+|++|++||.|+..++ +++.+-++.|++.....
T Consensus 86 DafVLVYs~~d~eSf~rv~-llKk~Idk~KdKKEvpiVVLaN~rdr~~p~------------~vd~d~A~~Wa~rEkvk- 151 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVE-LLKKEIDKHKDKKEVPIVVLANKRDRAEPR------------EVDMDVAQIWAKREKVK- 151 (198)
T ss_pred ceEEEEecCCCHHHHHHHH-HHHHHHhhccccccccEEEEechhhcccch------------hcCHHHHHHHHhhhhee-
Confidence 9999999999999999875 5555565543 579999999999998776 88999999999999888
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKKQDKS 203 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 203 (205)
+++++|.+.-.+-+-|..+...+...+.++
T Consensus 152 l~eVta~dR~sL~epf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 152 LWEVTAMDRPSLYEPFTYLASRLHQPQSKS 181 (198)
T ss_pred EEEEEeccchhhhhHHHHHHHhccCCcccc
Confidence 999999999999999999999887766654
No 152
>KOG1673|consensus
Probab=99.90 E-value=1.3e-22 Score=135.94 Aligned_cols=173 Identities=24% Similarity=0.448 Sum_probs=146.5
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 94 (205)
.+.+..-.+||.++|++..|||||+-++.++.+.+.+..+.+..+ .+.+.+.+..+.+.|||++|++++....+..+.+
T Consensus 13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d 92 (205)
T KOG1673|consen 13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD 92 (205)
T ss_pred cccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence 345778899999999999999999999999999888888888888 5789999999999999999999999999999999
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhCC-CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
+-+++|+||.+.++++..+. +|....+.... .+| ++||+|.|+.-.-+... +.-...+++.+|+-.++.
T Consensus 93 svaIlFmFDLt~r~TLnSi~-~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~-------Q~~I~~qar~YAk~mnAs- 162 (205)
T KOG1673|consen 93 SVAILFMFDLTRRSTLNSIK-EWYRQARGLNKTAIP-ILVGTKYDLFIDLPPEL-------QETISRQARKYAKVMNAS- 162 (205)
T ss_pred cEEEEEEEecCchHHHHHHH-HHHHHHhccCCccce-EEeccchHhhhcCCHHH-------HHHHHHHHHHHHHHhCCc-
Confidence 99999999999999999988 89999888763 444 57899999753321100 022344678889999988
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
++.||+....|++++|.-+...+.+
T Consensus 163 L~F~Sts~sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 163 LFFCSTSHSINVQKIFKIVLAKLFN 187 (205)
T ss_pred EEEeeccccccHHHHHHHHHHHHhC
Confidence 9999999999999999998887654
No 153
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=1.6e-22 Score=156.99 Aligned_cols=161 Identities=23% Similarity=0.211 Sum_probs=112.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCccc----cccccc---C
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY----ERLRPM---S 91 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~ 91 (205)
-+....|+++|.|+||||||++++...+.. ..+..|+.......+.+++ ...+.+||+||.... ..+... .
T Consensus 154 lk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrh 232 (329)
T TIGR02729 154 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKH 232 (329)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHH
Confidence 344567999999999999999999986532 2333333222222334433 356899999997431 122222 3
Q ss_pred cCCCcEEEEEEECCCc---chHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714 92 YPNTDCFLLCFSIGST---SSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 92 ~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (205)
++.++++++|+|+++. .+++.+. .|...+..+. .+.|++||+||+|+.... ...+..+.+
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-------------~~~~~~~~l 298 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKIDLLDEE-------------ELAELLKEL 298 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCccCCChH-------------HHHHHHHHH
Confidence 4579999999999976 5667765 7777776654 479999999999987542 112344555
Q ss_pred HHHcCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 166 RRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 166 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
++..+.. ++++||++++|++++++++.+.+
T Consensus 299 ~~~~~~~-vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 299 KKALGKP-VFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHcCCc-EEEEEccCCcCHHHHHHHHHHHh
Confidence 5555654 99999999999999999998754
No 154
>KOG0072|consensus
Probab=99.90 E-value=8.4e-24 Score=139.78 Aligned_cols=165 Identities=19% Similarity=0.232 Sum_probs=127.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.++.+|+++|.-|+||||++.++.-++... ..|+++.... .+.+ ++.++++||++|+-..+..|++++.+.|++||
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve-~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVE-TVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCcc-cccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 378999999999999999998887776533 3566655543 2333 56889999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
|+|.+|+..+.-...++..++.+.. .+.-++|++||.|........+...+++ ..++ +.....++++||
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~--------l~~L--k~r~~~Iv~tSA 161 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLG--------LQKL--KDRIWQIVKTSA 161 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhC--------hHHH--hhheeEEEeecc
Confidence 9999999877777667888886655 6788999999999877543322222221 1111 122355999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q psy15714 180 KLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~~ 199 (205)
.+|+|+++.++|+.+.+..+
T Consensus 162 ~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 162 VKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ccccCCcHHHHHHHHHHhcc
Confidence 99999999999999987654
No 155
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=1.2e-22 Score=146.65 Aligned_cols=158 Identities=19% Similarity=0.094 Sum_probs=109.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccc--------------ccc-ceeEEECCEEEEEEEEEcCCCcccccccc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF--------------DNY-PDTITVDNKTYDVTLWDTAGQEDYERLRP 89 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~--------------~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 89 (205)
+|+|+|.+|+|||||++++.+............ ... ............+.+||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999998876543322110 000 00111222246799999999998888888
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI 169 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (205)
.++..+|++++|+|+.+..+.... .++..+.. .+.|+++++||+|+...... ....++.++..+..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~~----------~~~~~~~~~~~~~~ 146 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEEDL----------EEVLREIKELLGLI 146 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhcH----------HHHHHHHHHHHccc
Confidence 888999999999999887654432 44455544 48999999999999763211 11122233333322
Q ss_pred -------------CCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 170 -------------KAAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 170 -------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
...+++++||++|.|++++|.++.+.+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 235599999999999999999998876
No 156
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=4.6e-22 Score=160.96 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=113.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccccc----------
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR---------- 88 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------- 88 (205)
...++|+++|.+++|||||++++++... ......++.+.....+..++. .+.+|||||..++....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 4568999999999999999999998653 334444444444445555664 68899999975543321
Q ss_pred -ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714 89 -PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR 167 (205)
Q Consensus 89 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (205)
...++.+|++++|+|++++.+..+. .++..+... +.|+++|+||+|+....... .....+......
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~---------~~~~~~~~~~~~ 314 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDEKTR---------EEFKKELRRKLP 314 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCHHHH---------HHHHHHHHHhcc
Confidence 2357889999999999988777665 455555544 79999999999997221000 001111222222
Q ss_pred HcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 168 KIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
..+..+++++||++|.|++++|+++.+.+...
T Consensus 315 ~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 315 FLDFAPIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred cCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 23445699999999999999999998876543
No 157
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.89 E-value=2.1e-22 Score=143.86 Aligned_cols=152 Identities=24% Similarity=0.213 Sum_probs=102.5
Q ss_pred EECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEEC-CEEEEEEEEEcCCCcc----ccccc---ccCcCCCcEE
Q psy15714 28 TVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVD-NKTYDVTLWDTAGQED----YERLR---PMSYPNTDCF 98 (205)
Q Consensus 28 v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~~ 98 (205)
++|++|+|||||++++.+..+ ...+..++.......+.++ + ..+.+||+||... .+.+. ...+..+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999998864 2233333322222334444 4 5689999999733 22222 2246789999
Q ss_pred EEEEECCCc------chHHHHHHHHHHHHhhhC--------CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714 99 LLCFSIGST------SSYENILSKWYPELKHHC--------PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK 164 (205)
Q Consensus 99 i~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (205)
++|+|+++. .++.+.. .|...+.... .+.|+++|+||+|+.... .........
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~------------~~~~~~~~~ 145 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYE-ILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE------------ELEEELVRE 145 (176)
T ss_pred EEEEeccCCccccccCHHHHHH-HHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh------------HHHHHHHHH
Confidence 999999988 4666665 5655555432 379999999999997653 111111223
Q ss_pred HHHHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 165 MRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 165 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
.....+.. ++++||+++.|++++++++...
T Consensus 146 ~~~~~~~~-~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 146 LALEEGAE-VVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HhcCCCCC-EEEEehhhhcCHHHHHHHHHhh
Confidence 33333444 9999999999999999998754
No 158
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=3.3e-22 Score=160.73 Aligned_cols=152 Identities=19% Similarity=0.182 Sum_probs=112.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc--------ccc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENK--FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL--------RPM 90 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 90 (205)
...+||+++|++|+|||||++++.+.. +...+.+++.+.....+.+++ ..+.+|||||...+... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 455899999999999999999999875 344555555554455667777 45789999998654332 234
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
+++.+|++++|||++++.+++.. |+..+.. .++|+++|+||+|+... +...+++..+
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~------------------~~~~~~~~~~ 335 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN------------------SLEFFVSSKV 335 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc------------------chhhhhhhcC
Confidence 67899999999999998877653 6555543 37899999999998542 1122344445
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
.. ++++||++ .|++++|+.+.+.+...
T Consensus 336 ~~-~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 336 LN-SSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred Cc-eEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 55 89999998 69999999998887653
No 159
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=2.1e-22 Score=157.66 Aligned_cols=152 Identities=23% Similarity=0.225 Sum_probs=108.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCc---------ccccccccC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE---------DYERLRPMS 91 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 91 (205)
..++|+++|.+++|||||+|++.+..+. .....++.+.....+.+.+. ..+.+|||+|.. .|+..+. .
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle-~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLE-E 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHH-H
Confidence 3489999999999999999999987643 23333333334455556322 478999999972 2333222 4
Q ss_pred cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
+.++|++++|+|++++.+..... .|...+.... .+.|+++|+||+|+.... .+ ..... .
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~-~~~~~L~~l~~~~~piIlV~NK~Dl~~~~------------~v-----~~~~~--~ 325 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIE-AVEKVLEELGAEDIPQLLVYNKIDLLDEP------------RI-----ERLEE--G 325 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHH-HHHHHHHHhccCCCCEEEEEEeecCCChH------------hH-----HHHHh--C
Confidence 77899999999999998877764 5666666554 479999999999986432 11 11111 1
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
..+++++||++|.|+++++++|.+.
T Consensus 326 ~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHhh
Confidence 2348999999999999999998764
No 160
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=3.1e-22 Score=141.44 Aligned_cols=158 Identities=21% Similarity=0.129 Sum_probs=105.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCccccc--------ccccCcC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER--------LRPMSYP 93 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 93 (205)
...+|+++|++|+|||||++++.+..+........................+.+||+||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999876532211111111111122233346789999999654322 1233578
Q ss_pred CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
.+|++++|+|++++.+ .....+...+... +.|+++|+||+|+.... ....+....+....+..+
T Consensus 82 ~~d~i~~v~d~~~~~~--~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~ 145 (168)
T cd04163 82 DVDLVLFVVDASEPIG--EGDEFILELLKKS--KTPVILVLNKIDLVKDK------------EDLLPLLEKLKELGPFAE 145 (168)
T ss_pred hCCEEEEEEECCCccC--chHHHHHHHHHHh--CCCEEEEEEchhccccH------------HHHHHHHHHHHhccCCCc
Confidence 8999999999998722 2222444555444 79999999999997432 222333444444454556
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
++++|++++.|+++++++|.+.
T Consensus 146 ~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 146 IFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred eEEEEeccCCChHHHHHHHHhh
Confidence 9999999999999999999764
No 161
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=3.2e-22 Score=163.06 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=108.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcc--------cccccccC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED--------YERLRPMS 91 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 91 (205)
...+|+++|.+|+|||||++++.+.... .....++.+.....+..++ ..+.+||+||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 3479999999999999999999987642 2222222222233445556 3588999999763 23334456
Q ss_pred cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714 92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA 171 (205)
Q Consensus 92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (205)
++.+|++++|||+++..+.... .|...+... +.|+++|+||+|+.... .+....+ ..+.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~~--~i~~~l~~~--~~piilV~NK~Dl~~~~---------------~~~~~~~--~~g~ 173 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATDE--AVARVLRRS--GKPVILAANKVDDERGE---------------ADAAALW--SLGL 173 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCccc---------------hhhHHHH--hcCC
Confidence 8899999999999998766542 566666654 89999999999986421 1112222 2333
Q ss_pred ceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 172 AEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
...+++||++|.|++++|+++++.+.+
T Consensus 174 ~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 174 GEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 335799999999999999999988755
No 162
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.89 E-value=3e-22 Score=146.29 Aligned_cols=120 Identities=17% Similarity=0.212 Sum_probs=91.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCC-cEEEEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT-DCFLLCFS 103 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~i~v~d 103 (205)
+|+++|++|+|||+|+++|..+.+...+.++............+....+.+||+||+.+++..+..+++.+ +++|||+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999998866655442222111111123456799999999999988888888888 99999999
Q ss_pred CCCc-chHHHHHHHHHHHHhhh---CCCCCEEEEeeCcccccCch
Q psy15714 104 IGST-SSYENILSKWYPELKHH---CPKVPIILVGTKADLRSENK 144 (205)
Q Consensus 104 ~~~~-~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~ 144 (205)
+++. .++..+...|...+... .+++|+++++||+|+....+
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 9998 67777765555554432 26899999999999876544
No 163
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=1.2e-21 Score=137.27 Aligned_cols=145 Identities=27% Similarity=0.279 Sum_probs=103.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc--------cccCcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL--------RPMSYP 93 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 93 (205)
++|+++|++|+|||||++++.+.... .....+...........++ ..+.+||+||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987642 2223332222223344444 56899999997654321 123567
Q ss_pred CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
.+|++++|+|++++.+..... .|.. ..+.|+++|+||+|+.... .. ..... ..+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~-~~~~-----~~~~~vi~v~nK~D~~~~~------------~~-------~~~~~-~~~ 133 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLE-ILEL-----PADKPIIVVLNKSDLLPDS------------EL-------LSLLA-GKP 133 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHH-HHHh-----hcCCCEEEEEEchhcCCcc------------cc-------ccccC-CCc
Confidence 899999999999887776654 2322 3489999999999987643 11 22223 344
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
++++||+++.|+++++++|.+.+
T Consensus 134 ~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 134 IIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 99999999999999999988754
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=1.5e-21 Score=161.43 Aligned_cols=160 Identities=21% Similarity=0.235 Sum_probs=109.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
..+..+|+++|+.++|||||++++.+..+.....+.+.... ...+..++. ..+.+||||||+.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 45778999999999999999999998877654433222222 223344332 2789999999999999888889999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH---HHHHcC-CceE
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK---MRRKIK-AAEY 174 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~ 174 (205)
++|+|+++....+.. +.+...... ++|+++++||+|+...... .+ .++... ....++ ..++
T Consensus 163 ILVVda~dgv~~qT~--e~i~~~~~~--~vPiIVviNKiDl~~~~~e----------~v-~~~L~~~g~~~~~~~~~~~~ 227 (587)
T TIGR00487 163 VLVVAADDGVMPQTI--EAISHAKAA--NVPIIVAINKIDKPEANPD----------RV-KQELSEYGLVPEDWGGDTIF 227 (587)
T ss_pred EEEEECCCCCCHhHH--HHHHHHHHc--CCCEEEEEECcccccCCHH----------HH-HHHHHHhhhhHHhcCCCceE
Confidence 999999875433332 222333333 8999999999998643210 00 011110 112222 2358
Q ss_pred EEcccCCCCCHHHHHHHHHHH
Q psy15714 175 LECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
+++||++|+|++++|+++...
T Consensus 228 v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 228 VPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred EEEECCCCCChHHHHHhhhhh
Confidence 999999999999999998653
No 165
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=5e-22 Score=160.51 Aligned_cols=148 Identities=27% Similarity=0.255 Sum_probs=110.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc--------cccC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL--------RPMS 91 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 91 (205)
..++|+++|.+++|||||++++.+... ......++.+.....+.+++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 458999999999999999999998763 34445555444455666666 46899999998654332 1236
Q ss_pred cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714 92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA 171 (205)
Q Consensus 92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (205)
+..+|++++|+|++++.+++... .|.. ..+.|+++|+||+|+.... ... ...+
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~-~l~~-----~~~~piiiV~NK~DL~~~~------------~~~--------~~~~- 344 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDE-ILEE-----LKDKPVIVVLNKADLTGEI------------DLE--------EENG- 344 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHH-HHHh-----cCCCCcEEEEEhhhccccc------------hhh--------hccC-
Confidence 78899999999999988777543 3433 4479999999999996542 111 1222
Q ss_pred ceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 172 AEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
.+++++||++|.|++++++++.+.+..
T Consensus 345 ~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 348999999999999999999988753
No 166
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=8.6e-22 Score=143.31 Aligned_cols=166 Identities=17% Similarity=0.125 Sum_probs=107.8
Q ss_pred ccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCc----------cc
Q psy15714 15 VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE----------DY 84 (205)
Q Consensus 15 ~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~ 84 (205)
+.........+|+++|.+|+|||||++++.+..+...+.++.+........ ....++.|||+||.. .+
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~l~l~DtpG~~~~~~~~~~~~~~ 93 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFF--EVNDKLRLVDLPGYGYAKVSKEEKEKW 93 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEE--ecCCeEEEeCCCCCCCcCCCchHHHHH
Confidence 334445577899999999999999999999987555555554433221111 112679999999942 23
Q ss_pred ccccccCcC---CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714 85 ERLRPMSYP---NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ 161 (205)
Q Consensus 85 ~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (205)
......++. ..+++++++|.+++.+.... .+...+... +.|+++++||+|+.+.... +...++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~~----------~~~~~~ 159 (196)
T PRK00454 94 QKLIEEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGER----------KKQLKK 159 (196)
T ss_pred HHHHHHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHHH----------HHHHHH
Confidence 333333333 44688889998876544332 233334333 7999999999998754311 112223
Q ss_pred HHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 162 GKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 162 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
.......... +++++||+++.|++++|+.+.+.+.
T Consensus 160 i~~~l~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 160 VRKALKFGDD-EVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHhcCC-ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3334333334 4899999999999999999987664
No 167
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=3.2e-22 Score=138.29 Aligned_cols=147 Identities=19% Similarity=0.257 Sum_probs=101.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcccc------cccccC--cCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE------RLRPMS--YPN 94 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~--~~~ 94 (205)
++|+++|.|++|||||+|++++.+.. .+++.++.......+.+++ ..+.++|+||-.... .....+ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999999998743 2334443333344566667 568888999943322 122223 368
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY 174 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (205)
.|++++|.|+++.+ .-. ++...+.+. ++|+++++||+|+.... .+ ......+++.++.+ +
T Consensus 79 ~D~ii~VvDa~~l~---r~l-~l~~ql~e~--g~P~vvvlN~~D~a~~~------------g~-~id~~~Ls~~Lg~p-v 138 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNL-YLTLQLLEL--GIPVVVVLNKMDEAERK------------GI-EIDAEKLSERLGVP-V 138 (156)
T ss_dssp SSEEEEEEEGGGHH---HHH-HHHHHHHHT--TSSEEEEEETHHHHHHT------------TE-EE-HHHHHHHHTS--E
T ss_pred CCEEEEECCCCCHH---HHH-HHHHHHHHc--CCCEEEEEeCHHHHHHc------------CC-EECHHHHHHHhCCC-E
Confidence 99999999998643 322 455566666 89999999999987653 22 22466677778887 9
Q ss_pred EEcccCCCCCHHHHHHHH
Q psy15714 175 LECSAKLNEGLDQVFIAA 192 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i 192 (205)
+.+||++++|++++++.|
T Consensus 139 i~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 139 IPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEBTTTTBTHHHHHHHH
T ss_pred EEEEeCCCcCHHHHHhhC
Confidence 999999999999999865
No 168
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=1.5e-21 Score=162.06 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=112.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-------CCCCCcCcc------cccc-ceeEE--E---CCEEEEEEEEEcCCCcccc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK-------FPTDYVPTV------FDNY-PDTIT--V---DNKTYDVTLWDTAGQEDYE 85 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~-------~~~~~~~t~------~~~~-~~~~~--~---~~~~~~~~i~D~~g~~~~~ 85 (205)
+|+++|+.++|||||+++|.... +...+..+. +..+ ...+. + ++..+.+.+|||||+.+|.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 79999999999999999998642 222222221 2222 11222 2 5667899999999999998
Q ss_pred cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714 86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (205)
..+..++..+|++|+|+|+++..+.+... .|...+. .++|+++|+||+|+..... .+...++
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~-~~~~~~~---~~ipiIiViNKiDl~~~~~--------------~~~~~el 146 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLA-NVYLALE---NDLEIIPVINKIDLPSADP--------------ERVKKEI 146 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHH-HHHHHHH---cCCCEEEEEECcCCCccCH--------------HHHHHHH
Confidence 88888999999999999999987776654 4544332 3789999999999864321 1122334
Q ss_pred HHHcCCc--eEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 166 RRKIKAA--EYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 166 ~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
.+.++.. .++++||++|.|++++|+++.+.+..
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 4444432 37999999999999999999987654
No 169
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=4.1e-21 Score=136.67 Aligned_cols=155 Identities=22% Similarity=0.266 Sum_probs=103.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc-----------cc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL-----------RP 89 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~ 89 (205)
.++|+++|.+|+|||||++++.+.... .....+...........++. .+.+||+||....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999987532 22222222222334445553 4789999996543110 11
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHH-HHHHHHH
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ-GKKMRRK 168 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 168 (205)
..+..+|++++|+|++++.+.... .++..+... +.|+++++||+|+..... ...++ ...+.+.
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~~~------------~~~~~~~~~~~~~ 143 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEKDS------------KTMKEFKKEIRRK 143 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCccH------------HHHHHHHHHHHhh
Confidence 245789999999999988776554 344444333 799999999999876521 11111 1122222
Q ss_pred c---CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 169 I---KAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 169 ~---~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
. +..+++++||++++|++++++++.+.
T Consensus 144 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 144 LPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 2 23459999999999999999998764
No 170
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=2.1e-21 Score=149.59 Aligned_cols=160 Identities=22% Similarity=0.173 Sum_probs=108.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCCCccccc--------cccc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER--------LRPM 90 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~ 90 (205)
.+.-.|+++|.+|+|||||+|++.+.++.. ....|+..........+ ..++.+|||||...... ....
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~ 80 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWS 80 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 356789999999999999999999887632 22222222222122222 26899999999644221 1223
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
.+..+|++++|+|+++..+ .....++..+... +.|+++|+||+|+.... .........+.+..+
T Consensus 81 ~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~~--~~pvilVlNKiDl~~~~------------~~l~~~~~~l~~~~~ 144 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIG--PGDEFILEKLKKV--KTPVILVLNKIDLVKDK------------EELLPLLEELSELMD 144 (292)
T ss_pred HHhcCCEEEEEEeCCCCCC--hhHHHHHHHHhhc--CCCEEEEEECCcCCCCH------------HHHHHHHHHHHhhCC
Confidence 5788999999999988432 2222444444433 78999999999997432 122334455555556
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
...++++||+++.|++++++++.+.+..
T Consensus 145 ~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 145 FAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 6669999999999999999999887643
No 171
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=9.4e-22 Score=138.22 Aligned_cols=142 Identities=16% Similarity=0.139 Sum_probs=99.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcc-----cccccccCcCCCcEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED-----YERLRPMSYPNTDCFL 99 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-----~~~~~~~~~~~~~~~i 99 (205)
+|+++|.+++|||||++++.+... . ...+ ..+.+... .+||+||... ++.+. ..+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-Cccc------eEEEECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEEE
Confidence 799999999999999999876431 1 1111 12223222 2699999732 22222 2378999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC-ceEEEcc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA-AEYLECS 178 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S 178 (205)
+|+|+++..++.. .|+..+ ..+.|+++++||+|+... ..+...++++..+. .+++++|
T Consensus 70 ~v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~---------------~~~~~~~~~~~~~~~~p~~~~S 128 (158)
T PRK15467 70 YVHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDA---------------DVAATRKLLLETGFEEPIFELN 128 (158)
T ss_pred EEEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCcc---------------cHHHHHHHHHHcCCCCCEEEEE
Confidence 9999998876533 343332 247899999999998542 23455666667765 3699999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhc
Q psy15714 179 AKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~~~ 200 (205)
|++|+|++++|+++.+.+.+..
T Consensus 129 a~~g~gi~~l~~~l~~~~~~~~ 150 (158)
T PRK15467 129 SHDPQSVQQLVDYLASLTKQEE 150 (158)
T ss_pred CCCccCHHHHHHHHHHhchhhh
Confidence 9999999999999988775543
No 172
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=1.5e-21 Score=141.61 Aligned_cols=160 Identities=20% Similarity=0.124 Sum_probs=100.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC----CCCCCCc-----CccccccceeEEE------------CCEEEEEEEEEcCCCc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN----KFPTDYV-----PTVFDNYPDTITV------------DNKTYDVTLWDTAGQE 82 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~----~~~~~~~-----~t~~~~~~~~~~~------------~~~~~~~~i~D~~g~~ 82 (205)
++|+++|++++|||||+++|... .+...+. .|....+ ....+ .+..+.+.+||+||+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGF-SSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecc-eEEEecccccccccccccccCceEEEEECCCcH
Confidence 48999999999999999999872 2211111 1111111 11222 2335789999999997
Q ss_pred ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG 162 (205)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (205)
.+..........+|++++|+|+.+..+..... .|. ..... +.|+++++||+|+...... ....++.
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-~~~-~~~~~--~~~~iiv~NK~Dl~~~~~~----------~~~~~~~ 145 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAE-CLV-IGEIL--CKKLIVVLNKIDLIPEEER----------ERKIEKM 145 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHHH-HHH-HHHHc--CCCEEEEEECcccCCHHHH----------HHHHHHH
Confidence 65433333456789999999998765444332 222 22222 6899999999998743211 1111222
Q ss_pred HH-HHHH-----cCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 163 KK-MRRK-----IKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 163 ~~-~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
.+ +... ....+++++||++|+|++++++++.+.+..
T Consensus 146 ~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 146 KKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 21 1111 122349999999999999999999988764
No 173
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=1.5e-21 Score=140.13 Aligned_cols=151 Identities=19% Similarity=0.163 Sum_probs=99.0
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccce-eEEECCEEEEEEEEEcCCCc----------ccccc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE----------DYERL 87 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~----------~~~~~ 87 (205)
...+..+|+++|.+|+|||||++++.+..+...+.++.+..... ....++ .+.+||+||.. .+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 34677899999999999999999999886444444444333321 222232 58999999952 23222
Q ss_pred cccCcC---CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714 88 RPMSYP---NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK 164 (205)
Q Consensus 88 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (205)
...+++ .++++++|+|++++-+..+. .++..+... +.|+++++||+|+...... ....++.+.
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~~----------~~~~~~i~~ 156 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSEL----------NKQLKKIKK 156 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHHH----------HHHHHHHHH
Confidence 223333 46899999999876555554 344555544 7999999999998753211 222344445
Q ss_pred HHHHcCC-ceEEEcccCCCCCHH
Q psy15714 165 MRRKIKA-AEYLECSAKLNEGLD 186 (205)
Q Consensus 165 ~~~~~~~-~~~~~~Sa~~~~~i~ 186 (205)
.....+. ..++++||++|+|++
T Consensus 157 ~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 157 ALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHhhccCCCceEEEECCCCCCCC
Confidence 5554432 259999999999974
No 174
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=5.1e-21 Score=155.14 Aligned_cols=149 Identities=20% Similarity=0.181 Sum_probs=106.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcc--------cccccccCcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED--------YERLRPMSYP 93 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 93 (205)
.+|+++|.+|+|||||++++.+... ...+..++.+.....+..++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998764 33434443444444556666 6799999999876 2222345678
Q ss_pred CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
.+|++++|+|+.+..+..+. .+...+... +.|+++|+||+|+.... +...++ ..++...
T Consensus 80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~----------------~~~~~~-~~lg~~~ 138 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE----------------ADAYEF-YSLGLGE 138 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch----------------hhHHHH-HhcCCCC
Confidence 99999999999886444332 233444444 89999999999964321 111222 2445545
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
++++||++|.|++++|+++.+.
T Consensus 139 ~~~iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 139 PYPISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred CEEEEeeCCCCHHHHHHHHHhh
Confidence 7999999999999999999873
No 175
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.2e-20 Score=150.21 Aligned_cols=157 Identities=22% Similarity=0.222 Sum_probs=109.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcc----ccccccc---CcCCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----YERLRPM---SYPNT 95 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~ 95 (205)
..|+++|.|+||||||++++++.+.. ..+..|+.......+.+++ ...+.+||+||... ...+... .++.+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 48999999999999999999986632 2333333222222233331 25699999999642 2122222 35569
Q ss_pred cEEEEEEECCCc---chHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714 96 DCFLLCFSIGST---SSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI 169 (205)
Q Consensus 96 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (205)
+++++|+|+++. ..+++.. .|...+..+. .+.|++||+||+|+... .+..+.+.+.+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----------------~e~l~~l~~~l 300 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKMDLPEA----------------EENLEEFKEKL 300 (424)
T ss_pred CEEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCCCCcCC----------------HHHHHHHHHHh
Confidence 999999999864 5666665 7777777654 37999999999998432 12344555555
Q ss_pred CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+. +++++||++++|++++++++.+.+.+.
T Consensus 301 ~~-~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 301 GP-KVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CC-cEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 54 489999999999999999998877553
No 176
>KOG0096|consensus
Probab=99.86 E-value=6.5e-22 Score=136.78 Aligned_cols=163 Identities=28% Similarity=0.465 Sum_probs=137.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCE-EEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNK-TYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
...++++++|..|.||||+++++..+.|...+.+|.+......+...+. .+++..||++|++.+-.+...++=+....+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 4568999999999999999999999999999999998888665554443 599999999999999999888888999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
++||++.+-++.++. .|...+.+.+.|+|++++|||.|..... .......+-+..++. +++.||
T Consensus 88 imFdVtsr~t~~n~~-rwhrd~~rv~~NiPiv~cGNKvDi~~r~--------------~k~k~v~~~rkknl~-y~~iSa 151 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVP-RWHRDLVRVRENIPIVLCGNKVDIKARK--------------VKAKPVSFHRKKNLQ-YYEISA 151 (216)
T ss_pred EEeeeeehhhhhcch-HHHHHHHHHhcCCCeeeeccceeccccc--------------cccccceeeecccce-eEEeec
Confidence 999999999999987 8999998888899999999999976542 122223333444555 999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q psy15714 180 KLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~~ 199 (205)
+.+.|.+.-|.|+.+.+...
T Consensus 152 ksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 152 KSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred ccccccccchHHHhhhhcCC
Confidence 99999999999999887643
No 177
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=8.4e-21 Score=161.40 Aligned_cols=162 Identities=21% Similarity=0.158 Sum_probs=113.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcc----------cccc-c
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----------YERL-R 88 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~ 88 (205)
...||+++|.+++|||||++++.+... ...+.+|+.+.+...+.+++.. +.+|||||..+ |..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 457999999999999999999998864 3455556555555556677754 66999999532 2111 1
Q ss_pred ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714 89 PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK 168 (205)
Q Consensus 89 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (205)
...++.+|++++|+|+++..+..+.. +...+... ++|+++|+||+|+.+.... .....+.......
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~--i~~~~~~~--~~piIiV~NK~DL~~~~~~----------~~~~~~~~~~l~~ 592 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK--VMSMAVDA--GRALVLVFNKWDLMDEFRR----------QRLERLWKTEFDR 592 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEEchhcCChhHH----------HHHHHHHHHhccC
Confidence 23468899999999999998887763 44555444 8999999999999753210 0001111111112
Q ss_pred cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 169 IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
....+.+.+||++|.|++++|+.+.+...+.
T Consensus 593 ~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 593 VTWARRVNLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 2334578999999999999999999887653
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=6.5e-21 Score=159.94 Aligned_cols=162 Identities=20% Similarity=0.238 Sum_probs=112.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccc---ccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFD---NYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
..+..+|+++|..++|||||++++....+.....+.+.. .+......++....+.+|||||++.|..++...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 457789999999999999999999987765433322211 11222333445578999999999999998888999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH---HHHHcC-Cc
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK---MRRKIK-AA 172 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~ 172 (205)
++|+|+|+++....... +.+..+... ++|++|++||+|+...... .+ .++... +...++ ..
T Consensus 321 iaILVVDA~dGv~~QT~--E~I~~~k~~--~iPiIVViNKiDl~~~~~e----------~v-~~eL~~~~ll~e~~g~~v 385 (742)
T CHL00189 321 IAILIIAADDGVKPQTI--EAINYIQAA--NVPIIVAINKIDKANANTE----------RI-KQQLAKYNLIPEKWGGDT 385 (742)
T ss_pred EEEEEEECcCCCChhhH--HHHHHHHhc--CceEEEEEECCCccccCHH----------HH-HHHHHHhccchHhhCCCc
Confidence 99999999886433332 122233333 8999999999998753210 00 011110 122232 35
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
+++++||++|+|++++|+++....
T Consensus 386 pvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 386 PMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred eEEEEECCCCCCHHHHHHhhhhhh
Confidence 699999999999999999987754
No 179
>PRK11058 GTPase HflX; Provisional
Probab=99.86 E-value=2.1e-20 Score=149.57 Aligned_cols=156 Identities=21% Similarity=0.168 Sum_probs=106.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEECCEEEEEEEEEcCCCccc--ccccc------cCcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY--ERLRP------MSYPN 94 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~~~ 94 (205)
.+|+++|.+++|||||+|++.+..+.. +...++.+.....+...+. ..+.+|||+|..+. ...+. ..+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 589999999999999999999876432 2223333333334445442 25789999997431 11122 23688
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
+|++++|+|++++.+...+. .|...+.... .++|+++|+||+|+..... . ... ....+...
T Consensus 277 ADlIL~VvDaS~~~~~e~l~-~v~~iL~el~~~~~pvIiV~NKiDL~~~~~------------~-~~~----~~~~~~~~ 338 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIE-AVNTVLEEIDAHEIPTLLVMNKIDMLDDFE------------P-RID----RDEENKPI 338 (426)
T ss_pred CCEEEEEEeCCCccHHHHHH-HHHHHHHHhccCCCCEEEEEEcccCCCchh------------H-HHH----HHhcCCCc
Confidence 99999999999998777764 4555555443 4799999999999864310 0 000 01123332
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
++.+||++|+|++++++++.+.+..
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 5889999999999999999988754
No 180
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=1.5e-20 Score=151.56 Aligned_cols=164 Identities=17% Similarity=0.119 Sum_probs=107.9
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcc----cccc---ccc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----YERL---RPM 90 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~ 90 (205)
.-+....|+++|.|+||||||++++.+.+.. ..+..|+.......+.+++ ..+.+||+||... ...+ +-.
T Consensus 155 eLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLr 232 (500)
T PRK12296 155 ELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLR 232 (500)
T ss_pred EecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHH
Confidence 3345578999999999999999999976542 2334443333233444555 5799999999532 1111 112
Q ss_pred CcCCCcEEEEEEECCCc----chHHHHHHHHHHHHhhhC------------CCCCEEEEeeCcccccCchhhhhhhhhcc
Q psy15714 91 SYPNTDCFLLCFSIGST----SSYENILSKWYPELKHHC------------PKVPIILVGTKADLRSENKTIDKKKAAEV 154 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 154 (205)
.++.++++|+|+|+++. ..+.++. .|...+..+. .+.|++||+||+|+....
T Consensus 233 hieradvLv~VVD~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~----------- 300 (500)
T PRK12296 233 HIERCAVLVHVVDCATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR----------- 300 (500)
T ss_pred HHHhcCEEEEEECCcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-----------
Confidence 46789999999999853 3344433 4444443332 378999999999986542
Q ss_pred ccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 155 DLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
.+ .+.........+.. ++++||++++|+++++.+|.+.+...
T Consensus 301 -el-~e~l~~~l~~~g~~-Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 301 -EL-AEFVRPELEARGWP-VFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred -HH-HHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 11 11222222334544 99999999999999999998887654
No 181
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=1.1e-20 Score=156.78 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=110.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC---CCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK---FPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~---~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
+.|+++|..++|||||+++|.+.. +...+...+.... ...+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999999633 2222222222121 12334444 67999999999999888778889999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC---CceEE
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK---AAEYL 175 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 175 (205)
+|+|+++....+.. +.+..+... ++| ++||+||+|+.+.... ....++...+.+..+ ..+++
T Consensus 79 LVVDa~~G~~~qT~--ehl~il~~l--gi~~iIVVlNK~Dlv~~~~~----------~~~~~ei~~~l~~~~~~~~~~ii 144 (581)
T TIGR00475 79 LVVDADEGVMTQTG--EHLAVLDLL--GIPHTIVVITKADRVNEEEI----------KRTEMFMKQILNSYIFLKNAKIF 144 (581)
T ss_pred EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCCCCCHHHH----------HHHHHHHHHHHHHhCCCCCCcEE
Confidence 99999984322221 223334333 788 9999999999764311 122345555555543 34599
Q ss_pred EcccCCCCCHHHHHHHHHHHHHh
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
++||++|+|+++++.++...+..
T Consensus 145 ~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 145 KTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEeCCCCCCchhHHHHHHHHHHh
Confidence 99999999999999988776544
No 182
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.1e-20 Score=153.00 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=109.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCc--------ccccccccCcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE--------DYERLRPMSYPN 94 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 94 (205)
+|+++|.+|+|||||++++.+... ...+..++.+.....+..++ ..+.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998763 23334444444444555566 459999999963 233444557889
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY 174 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (205)
+|++++|+|+.+..+..+. .+...+++. +.|+++|+||+|+.... .. ..+ ...++..++
T Consensus 79 ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~------------~~----~~~-~~~lg~~~~ 137 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKED------------AV----AAE-FYSLGFGEP 137 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCccc------------cc----HHH-HHhcCCCCe
Confidence 9999999999876554442 455556555 89999999999987542 11 111 235566568
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 175 LECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
+++||++|.|++++++++.+.+..
T Consensus 138 ~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 138 IPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred EEEeCCcCCChHHHHHHHHHhcCc
Confidence 999999999999999999887644
No 183
>KOG0074|consensus
Probab=99.86 E-value=3.2e-21 Score=127.24 Aligned_cols=164 Identities=20% Similarity=0.250 Sum_probs=121.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
..+++||+++|..++|||||+..+..... ....||.+... +.+..++ .+.+.+||++|+...+..|..++.+.|++|
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~-k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNT-KKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcce-EEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 36789999999999999999998887764 33455555443 3343433 478999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
||+|.+|...|+++.+++...++.-- ..+|+++.+||.|+....+..+.. ..+.-..-....+++-+||
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia----------~klnl~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIA----------LKLNLAGLRDRSWHIQECS 160 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHH----------HhcchhhhhhceEEeeeCc
Confidence 99999999999988766666665433 589999999999987643211100 0000011112345578999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15714 179 AKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~ 196 (205)
|.+++|+.+--+|+.+..
T Consensus 161 als~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred cccccCccCcchhhhcCC
Confidence 999999998888887654
No 184
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=2.3e-20 Score=157.89 Aligned_cols=163 Identities=22% Similarity=0.228 Sum_probs=111.2
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
...+...|+++|..++|||||++++..+.+.....+.+.... ...+..++ ..+++|||||++.|..++...+..+|+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCE
Confidence 356888999999999999999999998777544333221111 23344444 568999999999999988888999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC-CceEEE
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK-AAEYLE 176 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 176 (205)
+|+|||+++...-+... .| ..... .++|++|++||+|+...+...-.. .. .+...++..++ ..++++
T Consensus 364 aILVVdAddGv~~qT~e-~i-~~a~~--~~vPiIVviNKiDl~~a~~e~V~~-eL-------~~~~~~~e~~g~~vp~vp 431 (787)
T PRK05306 364 VVLVVAADDGVMPQTIE-AI-NHAKA--AGVPIIVAINKIDKPGANPDRVKQ-EL-------SEYGLVPEEWGGDTIFVP 431 (787)
T ss_pred EEEEEECCCCCCHhHHH-HH-HHHHh--cCCcEEEEEECccccccCHHHHHH-HH-------HHhcccHHHhCCCceEEE
Confidence 99999998853322221 22 22333 389999999999996532110000 00 00111222333 245999
Q ss_pred cccCCCCCHHHHHHHHHHH
Q psy15714 177 CSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~ 195 (205)
+||++|+|++++|++|...
T Consensus 432 vSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 432 VSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred EeCCCCCCchHHHHhhhhh
Confidence 9999999999999998754
No 185
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=1e-20 Score=136.84 Aligned_cols=161 Identities=20% Similarity=0.207 Sum_probs=109.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------cCc-c--cccc-ceeEEEC--CEEEEEEEEEcCCCc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDY-------------VPT-V--FDNY-PDTITVD--NKTYDVTLWDTAGQE 82 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~-------------~~t-~--~~~~-~~~~~~~--~~~~~~~i~D~~g~~ 82 (205)
+..+|+++|+.++|||||++++....-.... .+. . +... ....... .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4578999999999999999998854321110 000 0 1111 1122222 444679999999999
Q ss_pred ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG 162 (205)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (205)
.|.......+..+|++|+|+|+.+....... +.+..+... ++|++|++||+|+...+.. ....+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~~~~----------~~~~~~~ 147 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEKELE----------EIIEEIK 147 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHHHHH----------HHHHHHH
T ss_pred ceeecccceecccccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhhhHH----------HHHHHHH
Confidence 9888777779999999999999877554332 455666666 8999999999999833211 1112222
Q ss_pred HHHHHHcC-----CceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 163 KKMRRKIK-----AAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 163 ~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
..+.+..+ ..+++.+||.+|+|++++++.+.+.+
T Consensus 148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 24444442 34699999999999999999998764
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=3.6e-20 Score=150.16 Aligned_cols=162 Identities=19% Similarity=0.169 Sum_probs=109.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc-----------
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL----------- 87 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 87 (205)
...++|+++|.+++|||||++++++... ......++.......+..++ ..+.+|||||.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3579999999999999999999997642 23333333333333344555 45788999996432211
Q ss_pred cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714 88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR 167 (205)
Q Consensus 88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (205)
....++.+|++++|+|++++.+..+. .+...+... +.|+++|+||+|+...... ....++......
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~~----------~~~~~~~~~~l~ 314 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKTM----------EEFKKELRRRLP 314 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHHH----------HHHHHHHHHhcc
Confidence 12357789999999999998776665 455555544 7999999999998743210 011111222222
Q ss_pred HcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 168 KIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
.....+++++||++|.|++++|+.+.+....
T Consensus 315 ~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 315 FLDYAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred cccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2344569999999999999999998876654
No 187
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.85 E-value=1.9e-20 Score=136.87 Aligned_cols=116 Identities=22% Similarity=0.169 Sum_probs=76.9
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhh
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKK 150 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 150 (205)
..+.+||+||++.+...+...+..+|++++|+|++++....... ..+..+... ...|+++|+||+|+......
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~-~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~----- 155 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTS-EHLAALEIM-GLKHIIIVQNKIDLVKEEQA----- 155 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchH-HHHHHHHHc-CCCcEEEEEEchhccCHHHH-----
Confidence 67999999999988777777788899999999998741111111 122222222 23479999999998653211
Q ss_pred hhccccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 151 AAEVDLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
....++.+++.... ...+++++||++|+|++++|+++.+.+..
T Consensus 156 -----~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 156 -----LENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred -----HHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 11123333443332 22348999999999999999999876543
No 188
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=8.1e-20 Score=144.71 Aligned_cols=162 Identities=19% Similarity=0.137 Sum_probs=111.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCccccc----c---cccCcCC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER----L---RPMSYPN 94 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~~~~ 94 (205)
-..|+++|.|+||||||++++++.+.. ..+..|+.....-.+...+ ...+.++|+||...-.. + .-..++.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 347999999999999999999976542 3334444333333344432 23588999999643110 1 1124788
Q ss_pred CcEEEEEEECC---CcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714 95 TDCFLLCFSIG---STSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK 168 (205)
Q Consensus 95 ~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (205)
++++++|+|++ +...++.+. .|+..+..+. .+.|+++|+||+|+.... .+ .+..+.+.+.
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~------------el-~~~l~~l~~~ 303 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKIDLLDEE------------EA-EERAKAIVEA 303 (390)
T ss_pred CCEEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCCccCChH------------HH-HHHHHHHHHH
Confidence 99999999988 445666654 7777777654 478999999999986532 11 2333444444
Q ss_pred cCC-ceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 169 IKA-AEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 169 ~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
.+. .+++.+||+++.|+++++++|.+.+...
T Consensus 304 ~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 304 LGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred hCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 432 2489999999999999999999887653
No 189
>KOG1707|consensus
Probab=99.84 E-value=5.8e-21 Score=152.23 Aligned_cols=169 Identities=21% Similarity=0.333 Sum_probs=127.2
Q ss_pred ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
+....+.+||+++|+.|+||||||-++...++.+..++.. ..+.....+....+...|.|++....-+......++.+|
T Consensus 3 ~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl-~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~ 81 (625)
T KOG1707|consen 3 DDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL-PRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKAD 81 (625)
T ss_pred CccCccceEEEEECCCCccHHHHHHHHHhhhccccccccC-CccccCCccCcCcCceEEEecccccchhHHHHHHHhhcC
Confidence 3445678999999999999999999999999876644432 222211222233355888899877665555566789999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHH-H-HHHHHHcCC
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ-G-KKMRRKIKA 171 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 171 (205)
++.+||+++++++++.+..+|+..+++.. .++|+|+||||+|...... .+.+. . .-+.....+
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~------------~s~e~~~~pim~~f~Ei 149 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN------------NSDEVNTLPIMIAFAEI 149 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc------------cchhHHHHHHHHHhHHH
Confidence 99999999999999999999999999988 7999999999999987642 21122 1 112222244
Q ss_pred ceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 172 AEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
..+++|||++..++.++|....++++.
T Consensus 150 EtciecSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 150 ETCIECSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred HHHHhhhhhhhhhhHhhhhhhhheeec
Confidence 457999999999999999988777654
No 190
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=1.5e-19 Score=149.46 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=105.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCC----cCccccccceeE-------------EECCEEEEEEEEEcCCCccc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDY----VPTVFDNYPDTI-------------TVDNKTYDVTLWDTAGQEDY 84 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~----~~t~~~~~~~~~-------------~~~~~~~~~~i~D~~g~~~~ 84 (205)
+..-|+++|.+++|||||++++.+..+.... ..+++..+.... .++.....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 4457999999999999999999988765332 222222221100 00111124889999999999
Q ss_pred ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhh-----h-------
Q psy15714 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKA-----A------- 152 (205)
Q Consensus 85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~------- 152 (205)
..++..+++.+|++++|||+++..+.+.. +.+..+... ++|+++++||+|+............ .
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~--e~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQ--EALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHH--HHHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 99888889999999999999874322222 222333333 8999999999999642110000000 0
Q ss_pred -------------ccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 153 -------------EVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 153 -------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
....+..+.........+..+++++||++|+|+++++.++...
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0000000100111111234569999999999999999988653
No 191
>KOG0076|consensus
Probab=99.84 E-value=8.3e-21 Score=129.58 Aligned_cols=163 Identities=21% Similarity=0.287 Sum_probs=121.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC---C----CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENK---F----PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSY 92 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~---~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 92 (205)
.+..+.++++|..++|||||+.+..... + .....+|.+-.. -.+.+++ ..+.+||.+|++..+++|..++
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni-g~i~v~~--~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI-GTIEVCN--APLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee-cceeecc--ceeEEEEcCChHHHHHHHHHHH
Confidence 3567889999999999999997665421 1 122334433333 2333443 5699999999999999999999
Q ss_pred CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH---HHH
Q psy15714 93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM---RRK 168 (205)
Q Consensus 93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 168 (205)
..++++++++|+++++.++.....+-..+..-. .++|+++.+||.|+.+.-. ..+.... +..
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--------------~~El~~~~~~~e~ 156 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--------------AAELDGVFGLAEL 156 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--------------HHHHHHHhhhhhh
Confidence 999999999999999999998866666665544 7999999999999877532 2222211 222
Q ss_pred c--CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 169 I--KAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 169 ~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
. ...++.++||.+|+||++...|++..+.+.
T Consensus 157 ~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 157 IPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 2 223489999999999999999999988776
No 192
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=2.8e-19 Score=133.07 Aligned_cols=150 Identities=20% Similarity=0.165 Sum_probs=100.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccc-------ccccCcCCCc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER-------LRPMSYPNTD 96 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~ 96 (205)
+|+++|.+|+|||||++++.+... ...+..++.......+.+++ ..+++||+||...... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998753 22333333333334455666 5789999999754321 1234688999
Q ss_pred EEEEEEECCCcch-HHHHHHH-----------------------------------------------------------
Q psy15714 97 CFLLCFSIGSTSS-YENILSK----------------------------------------------------------- 116 (205)
Q Consensus 97 ~~i~v~d~~~~~s-~~~~~~~----------------------------------------------------------- 116 (205)
++++|+|++++.. ...+...
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 9999999987652 2222111
Q ss_pred ------HHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHH
Q psy15714 117 ------WYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190 (205)
Q Consensus 117 ------~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 190 (205)
+.+.+......+|+++|+||+|+... ++...+++. .+++++||+++.|++++|+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----------------~~~~~~~~~---~~~~~~SA~~g~gi~~l~~ 219 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----------------EELDLLARQ---PNSVVISAEKGLNLDELKE 219 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----------------HHHHHHhcC---CCEEEEcCCCCCCHHHHHH
Confidence 11111111235799999999997542 233344433 2389999999999999999
Q ss_pred HHHHHH
Q psy15714 191 AAVRSA 196 (205)
Q Consensus 191 ~i~~~~ 196 (205)
.+.+.+
T Consensus 220 ~i~~~L 225 (233)
T cd01896 220 RIWDKL 225 (233)
T ss_pred HHHHHh
Confidence 998764
No 193
>KOG1423|consensus
Probab=99.84 E-value=4.8e-20 Score=136.87 Aligned_cols=180 Identities=17% Similarity=0.166 Sum_probs=120.6
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcc------c-----
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED------Y----- 84 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~------~----- 84 (205)
......+.++|+|+|.|++|||||.|.+.+.+..........+.....-.+.....++.++|+||-.. +
T Consensus 65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence 34567899999999999999999999999999876555554444444434445567899999999321 1
Q ss_pred -ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchh-hhhhhhhccccccH---
Q psy15714 85 -ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKT-IDKKKAAEVDLVST--- 159 (205)
Q Consensus 85 -~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~--- 159 (205)
....+..+..+|.+++|+|+++... .+....+..++++. ++|-++|.||.|....... ..+...+...+++.
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~--~l~p~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl 221 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRT--PLHPRVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL 221 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcC--ccChHHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence 1112345778999999999997433 23335666666654 8999999999998765443 22222333333332
Q ss_pred HHHHHHHH---------Hc---CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 160 SQGKKMRR---------KI---KAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 160 ~~~~~~~~---------~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
+....+.- .. +...+|.+||.+|+||+++-+++...+..
T Consensus 222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 11111110 11 12237999999999999999999887654
No 194
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=7.7e-20 Score=151.95 Aligned_cols=145 Identities=14% Similarity=0.179 Sum_probs=102.9
Q ss_pred CCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc------cccC--cCCCcEEEE
Q psy15714 30 GDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL------RPMS--YPNTDCFLL 100 (205)
Q Consensus 30 G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~--~~~~~~~i~ 100 (205)
|++|+|||||+|++.+..+. .++..++.+.....+.+++. ++.+||+||+.++... .+.+ ...+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999987653 23333322222344555663 5799999999876543 2222 247899999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|+|+++.+.. . ++...+.+. ++|+++|+||+|+.+.. .+. .+.+.+++..+.. ++++||+
T Consensus 79 VvDat~ler~---l-~l~~ql~~~--~~PiIIVlNK~Dl~~~~------------~i~-~d~~~L~~~lg~p-vv~tSA~ 138 (591)
T TIGR00437 79 VVDASNLERN---L-YLTLQLLEL--GIPMILALNLVDEAEKK------------GIR-IDEEKLEERLGVP-VVPTSAT 138 (591)
T ss_pred EecCCcchhh---H-HHHHHHHhc--CCCEEEEEehhHHHHhC------------CCh-hhHHHHHHHcCCC-EEEEECC
Confidence 9999875432 2 333344343 89999999999986542 222 3456777788876 9999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15714 181 LNEGLDQVFIAAVRSA 196 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~ 196 (205)
+|+|++++++++.+..
T Consensus 139 tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 139 EGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998753
No 195
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.83 E-value=8.5e-20 Score=127.77 Aligned_cols=153 Identities=20% Similarity=0.160 Sum_probs=101.6
Q ss_pred EECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCCCccccccc-------ccCcCCCcEE
Q psy15714 28 TVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR-------PMSYPNTDCF 98 (205)
Q Consensus 28 v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~~~~~~~~~ 98 (205)
++|++|+|||||++++.+..... ...++............. ...+.+||+||...+.... ...+..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999999865431 112222222222222221 4579999999977654333 3467899999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
++|+|+.+..+..... |....... +.|+++|+||+|+......... ..............+++++|
T Consensus 80 l~v~~~~~~~~~~~~~--~~~~~~~~--~~~~ivv~nK~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~s 145 (163)
T cd00880 80 LFVVDADLRADEEEEK--LLELLRER--GKPVLLVLNKIDLLPEEEEEEL----------LELRLLILLLLLGLPVIAVS 145 (163)
T ss_pred EEEEeCCCCCCHHHHH--HHHHHHhc--CCeEEEEEEccccCChhhHHHH----------HHHHHhhcccccCCceEEEe
Confidence 9999999887766653 44444433 8999999999998765321110 00111222233344599999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy15714 179 AKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~ 195 (205)
|.++.|++++++++.+.
T Consensus 146 a~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 146 ALTGEGIDELREALIEA 162 (163)
T ss_pred eeccCCHHHHHHHHHhh
Confidence 99999999999999865
No 196
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=1.5e-19 Score=134.54 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=115.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCccccc--------ccc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER--------LRP 89 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~ 89 (205)
..+.-.|+++|.|++|||||+|++.+.+.. ..-..|+.....-.+..+ ..++.+.||||-..-+. ...
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 356778999999999999999999998864 333444444444444444 46788889999433211 122
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI 169 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (205)
..+..+|+++||+|+++...-.+ +..+..++. .+.|+++++||+|...+. ..-......+....
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~------------~~l~~~~~~~~~~~ 144 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPK------------TVLLKLIAFLKKLL 144 (298)
T ss_pred HHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcH------------HHHHHHHHHHHhhC
Confidence 45788999999999988554433 145555555 378999999999988764 21133444455555
Q ss_pred CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
.....+++||++|.|++.+.+.+...+.+.
T Consensus 145 ~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 145 PFKEIVPISALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred CcceEEEeeccccCCHHHHHHHHHHhCCCC
Confidence 666699999999999999999988776543
No 197
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=4.4e-19 Score=122.73 Aligned_cols=159 Identities=15% Similarity=0.171 Sum_probs=118.4
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCC--------CCcC----ccccccceeEEECCEEEEEEEEEcCCCcccc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPT--------DYVP----TVFDNYPDTITVDNKTYDVTLWDTAGQEDYE 85 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~--------~~~~----t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 85 (205)
.......||+|.|+.++||||+++++....... .+.. |..-++.. +.+++ ...+.++++|||++|+
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~-~~~~~-~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS-IELDE-DTGVHLFGTPGQERFK 82 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc-eEEcC-cceEEEecCCCcHHHH
Confidence 345678999999999999999999999876411 1111 11111111 11222 2568899999999999
Q ss_pred cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714 86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (205)
-.|+..++++.++|+++|.+.+..++. . +.+..+.... .+|++|+.||+||.+. .+.+..+++
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~~a-~-~ii~f~~~~~-~ip~vVa~NK~DL~~a--------------~ppe~i~e~ 145 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITFHA-E-EIIDFLTSRN-PIPVVVAINKQDLFDA--------------LPPEKIREA 145 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcchHH-H-HHHHHHhhcc-CCCEEEEeeccccCCC--------------CCHHHHHHH
Confidence 999999999999999999999988833 3 5666666552 2999999999999984 555666666
Q ss_pred HHHc-CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 166 RRKI-KAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 166 ~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
.+.. --.+.++.+|..+++..+.++.+...
T Consensus 146 l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 146 LKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 5555 23449999999999999999888765
No 198
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=1.9e-19 Score=153.23 Aligned_cols=155 Identities=18% Similarity=0.118 Sum_probs=105.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcc--------ccccccc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED--------YERLRPM 90 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 90 (205)
....+|+++|.+++|||||++++++... ......++.+........++ ..+.+|||||.+. +......
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 3456899999999999999999998754 22222222222222333444 4688999999753 2222344
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
+++.+|++++|+|+.+.-.. ....|...++.. +.|+++|+||+|+.... ......+ ..+
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~--~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~---------------~~~~~~~--~lg 409 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTS--TDERIVRMLRRA--GKPVVLAVNKIDDQASE---------------YDAAEFW--KLG 409 (712)
T ss_pred HHHhCCEEEEEEECCCCCCH--HHHHHHHHHHhc--CCCEEEEEECcccccch---------------hhHHHHH--HcC
Confidence 67899999999999865332 223566666654 89999999999985421 1111112 233
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
....+++||++|.|++++|+++++.+..
T Consensus 410 ~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 410 LGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 3336799999999999999999988754
No 199
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.83 E-value=3.2e-19 Score=148.40 Aligned_cols=158 Identities=20% Similarity=0.197 Sum_probs=109.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCC-----CCcC------cccccc-ceeEEE-----CCEEEEEEEEEcCCCccc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN--KFPT-----DYVP------TVFDNY-PDTITV-----DNKTYDVTLWDTAGQEDY 84 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~--~~~~-----~~~~------t~~~~~-~~~~~~-----~~~~~~~~i~D~~g~~~~ 84 (205)
-+|+++|+.++|||||+.++... .+.. .+.. +.+..+ ...+.+ ++..+.+++|||||+.+|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 48999999999999999999853 2211 1100 111111 112222 456789999999999999
Q ss_pred ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK 164 (205)
Q Consensus 85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (205)
...+...+..+|++++|+|+++..+..... .|.... . .++|+++|+||+|+..... .....+
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~-~~~~~~-~--~~lpiIvViNKiDl~~a~~--------------~~v~~e 149 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLAL-E--NDLEIIPVLNKIDLPAADP--------------ERVKQE 149 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHH-H--CCCCEEEEEECCCCCcccH--------------HHHHHH
Confidence 888888899999999999999876665543 454332 2 3799999999999865321 111222
Q ss_pred HHHHcCCc--eEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 165 MRRKIKAA--EYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 165 ~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+.+.++.. .++++||++|.|+++++++|.+.+...
T Consensus 150 i~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 150 IEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 33333332 379999999999999999999876543
No 200
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.82 E-value=1.5e-19 Score=133.24 Aligned_cols=158 Identities=16% Similarity=0.088 Sum_probs=98.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC-----------cCcc------cccc-ceeEE--E---CCEEEEEEEEEcCCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDY-----------VPTV------FDNY-PDTIT--V---DNKTYDVTLWDTAGQ 81 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~-----------~~t~------~~~~-~~~~~--~---~~~~~~~~i~D~~g~ 81 (205)
+|+++|+.++|||||++++......... ..+. +..+ ..... . ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875433210 1110 1111 01111 1 355688999999999
Q ss_pred cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ 161 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (205)
..|.......+..+|++++|+|+++..+.... .|+...... +.|+++|+||+|+..........+....-....++
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~~--~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~ 157 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAILE--GLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE 157 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence 99877777788999999999999887765432 454544433 69999999999986221100000000000112233
Q ss_pred HHHHHHHcCC------ce----EEEcccCCCCCHH
Q psy15714 162 GKKMRRKIKA------AE----YLECSAKLNEGLD 186 (205)
Q Consensus 162 ~~~~~~~~~~------~~----~~~~Sa~~~~~i~ 186 (205)
....+...+. .| +++.|++.++++.
T Consensus 158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 4444444433 22 6789999998875
No 201
>KOG4423|consensus
Probab=99.82 E-value=9.5e-22 Score=135.59 Aligned_cols=170 Identities=23% Similarity=0.364 Sum_probs=143.5
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeE-EECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTI-TVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
.....+|++|+|..|+|||+++.++....|+..|..+++..+- +.. +-+...+.+++||++|++++..+.+.+++.+.
T Consensus 21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 3467789999999999999999999999999999999988873 333 33445578999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA 171 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (205)
+..+|||++..-+|+... .|...+.... ..+|+++..||+|...... .-......++.++++.
T Consensus 101 ~~~iVfdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankCd~e~~a~-----------~~~~~~~d~f~kengf 168 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK-----------NEATRQFDNFKKENGF 168 (229)
T ss_pred ceEEEEEccccccccHHH-HHHHhccCcccCCCCCcchheeccchhccChHhh-----------hhhHHHHHHHHhccCc
Confidence 999999999999999987 8988886544 4688999999999876431 1123556778888999
Q ss_pred ceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 172 AEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
...+++|++.+.+++|+-+.+++.+.-+.
T Consensus 169 ~gwtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 169 EGWTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred cceeeeccccccChhHHHHHHHHHHHhhc
Confidence 88999999999999999999999987654
No 202
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=6.8e-19 Score=149.64 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=109.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCccccccc----------cc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLR----------PM 90 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------~~ 90 (205)
+.++|+++|++++|||||+|++++..... .+..+... .+...+.....++.+||+||...+.... +.
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 45799999999999999999999865421 22223333 2233344445679999999987765321 11
Q ss_pred C--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714 91 S--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK 168 (205)
Q Consensus 91 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (205)
+ ...+|++++|+|+++.+... +|...+.+. ++|+++++||+|+.+.+ .+ ....+.+.+.
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~------------~i-~id~~~L~~~ 140 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQ------------NI-RIDIDALSAR 140 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhcc------------Cc-HHHHHHHHHH
Confidence 2 24789999999998865422 344555555 89999999999987542 22 3455677778
Q ss_pred cCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 169 IKAAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
++.+ ++++||.+++|++++++.+.+..
T Consensus 141 LG~p-VvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 141 LGCP-VIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred hCCC-EEEEEeecCCCHHHHHHHHHHhh
Confidence 8876 99999999999999999987764
No 203
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=7.3e-19 Score=124.40 Aligned_cols=154 Identities=18% Similarity=0.135 Sum_probs=98.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCCcc----------cccccccCc-
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQED----------YERLRPMSY- 92 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~- 92 (205)
.|+++|.+|+|||||++++.++.+.....++.+.... .....++ .+.+||+||... +......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 3799999999999999999976665555555443332 1222222 799999999533 223222233
Q ss_pred --CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH-Hc
Q psy15714 93 --PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR-KI 169 (205)
Q Consensus 93 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 169 (205)
...+++++++|..+..+.... .....+... +.|+++++||+|+...... ...........+ ..
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~l~~~~ 143 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSEL----------AKALKEIKKELKLFE 143 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHHH----------HHHHHHHHHHHHhcc
Confidence 346788999998766332221 233334333 6899999999998643211 112222232332 23
Q ss_pred CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 170 KAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
...+++++||+++.|++++++++.+.
T Consensus 144 ~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 144 IDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHh
Confidence 44558999999999999999998764
No 204
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.81 E-value=3.4e-19 Score=120.64 Aligned_cols=136 Identities=22% Similarity=0.199 Sum_probs=100.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCc----ccccccccCcCCCcEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE----DYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~~~~i~ 100 (205)
||+++|+.|+|||||++++.+..... ..|. .+.+.+ .++|+||.- .+.........++|.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~--~KTq------~i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY--KKTQ------AIEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc--Cccc------eeEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 79999999999999999999877532 2221 122222 236999942 233333345678999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
+.|++++.+.-.- .+...+ +.|+|-|+||+|+... ....+.++.+.+.-|....|++|+.
T Consensus 70 l~dat~~~~~~pP--~fa~~f-----~~pvIGVITK~Dl~~~-------------~~~i~~a~~~L~~aG~~~if~vS~~ 129 (143)
T PF10662_consen 70 LQDATEPRSVFPP--GFASMF-----NKPVIGVITKIDLPSD-------------DANIERAKKWLKNAGVKEIFEVSAV 129 (143)
T ss_pred EecCCCCCccCCc--hhhccc-----CCCEEEEEECccCccc-------------hhhHHHHHHHHHHcCCCCeEEEECC
Confidence 9999987543221 222222 7899999999999843 3456788889999999889999999
Q ss_pred CCCCHHHHHHHHH
Q psy15714 181 LNEGLDQVFIAAV 193 (205)
Q Consensus 181 ~~~~i~~~~~~i~ 193 (205)
+|+|++++.++|-
T Consensus 130 ~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 130 TGEGIEELKDYLE 142 (143)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999998874
No 205
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=7.4e-19 Score=141.91 Aligned_cols=161 Identities=11% Similarity=0.037 Sum_probs=100.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC----------------------CcCc-----ccccc-ceeEEECCE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTEN--KFPTD----------------------YVPT-----VFDNY-PDTITVDNK 69 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~----------------------~~~t-----~~~~~-~~~~~~~~~ 69 (205)
.+..++|+++|.+++|||||+++++.. .+... .+.+ .+... .....+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 466799999999999999999999832 21110 0000 01111 111223344
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhh
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK 149 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 149 (205)
.+++.+||+||++.|.......+..+|++++|+|+++...+......++..+... ...|+++++||+|+.......
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~--- 158 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEKR--- 158 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHHH---
Confidence 5789999999998886655556789999999999987322222111233333333 224699999999997522100
Q ss_pred hhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHHHH
Q psy15714 150 KAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQVF 189 (205)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 189 (205)
.....++...+.+..+. .+++++||++|+|+++.+
T Consensus 159 -----~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 159 -----YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred -----HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 01233455566655553 459999999999998743
No 206
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=8.5e-19 Score=137.34 Aligned_cols=150 Identities=20% Similarity=0.160 Sum_probs=113.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccc---------cccccCc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE---------RLRPMSY 92 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 92 (205)
..|+++|.|++|||||+||+.+.+. .+.+..++.+.........+.. |.++||+|-+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 5799999999999999999998865 4666777766666666666644 8888999965322 1233457
Q ss_pred CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714 93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172 (205)
Q Consensus 93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (205)
..+|+++||+|....-+-.+- .....+++. +.|+++|+||+|-.. .++.....-++|.-
T Consensus 82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~~--~kpviLvvNK~D~~~-----------------~e~~~~efyslG~g 140 (444)
T COG1160 82 EEADVILFVVDGREGITPADE--EIAKILRRS--KKPVILVVNKIDNLK-----------------AEELAYEFYSLGFG 140 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHHhc--CCCEEEEEEcccCch-----------------hhhhHHHHHhcCCC
Confidence 889999999999776554442 455666644 799999999999542 23333344566777
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
..+.+||..|.|+.++++++++.+
T Consensus 141 ~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 141 EPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred CceEeehhhccCHHHHHHHHHhhc
Confidence 789999999999999999999987
No 207
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.80 E-value=5.3e-19 Score=142.70 Aligned_cols=161 Identities=12% Similarity=0.045 Sum_probs=102.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc--CCCCCCC----------------------cCcc-----cccc-ceeEEECCE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE--NKFPTDY----------------------VPTV-----FDNY-PDTITVDNK 69 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~~~----------------------~~t~-----~~~~-~~~~~~~~~ 69 (205)
.+..++|+++|+.++|||||+++|+. +.+.... +.+. +... .....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45668999999999999999999985 3322100 0000 0000 011223344
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHH-HHHHHHhhhCCCCCEEEEeeCcccccCchhhhh
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILS-KWYPELKHHCPKVPIILVGTKADLRSENKTIDK 148 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 148 (205)
.+.+.+||+||++.|.......+..+|++++|+|+++.++...... .++... ......|++|++||+|+.......
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~~~iIVviNK~Dl~~~~~~~-- 160 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGINQLIVAINKMDSVNYDEEE-- 160 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCCCeEEEEEEChhccCccHHH--
Confidence 5789999999999887665567889999999999998753311110 122222 222345799999999996422100
Q ss_pred hhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHHHH
Q psy15714 149 KKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQVF 189 (205)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 189 (205)
.....++.+.+++..+. .+++++||++|+|+++.+
T Consensus 161 ------~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 161 ------FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred ------HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 02234566677776653 459999999999998633
No 208
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=7.1e-19 Score=140.90 Aligned_cols=164 Identities=20% Similarity=0.124 Sum_probs=103.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc------ccc-----------------cceeEEECC------EEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV------FDN-----------------YPDTITVDN------KTY 71 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~------~~~-----------------~~~~~~~~~------~~~ 71 (205)
+..++|+++|..++|||||++++.+... +.+.... ... +......++ ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~-d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWT-DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeec-ccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 4578999999999999999999975322 1111110 000 000000011 135
Q ss_pred EEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhh
Q psy15714 72 DVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKA 151 (205)
Q Consensus 72 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 151 (205)
.+.+||+||++.|...+...+..+|++++|+|+++........ +.+..+... ...|+++++||+|+......
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~-e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~------ 152 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK-EHLMALEII-GIKNIVIVQNKIDLVSKEKA------ 152 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH-HHHHHHHHc-CCCeEEEEEEccccCCHHHH------
Confidence 7999999999999887777788899999999998643111112 222333322 23468999999999754311
Q ss_pred hccccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 152 AEVDLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
....++...+.+.. ...+++++||++|+|+++++++|...+.
T Consensus 153 ----~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 153 ----LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred ----HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 11122333333322 1235999999999999999999987654
No 209
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=2e-18 Score=143.16 Aligned_cols=160 Identities=14% Similarity=0.046 Sum_probs=109.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc--CCCCCCCc------------Ccccccc-ceeEEECCEEEEEEEEEcCCCcccccc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE--NKFPTDYV------------PTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERL 87 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 87 (205)
--+|+++|+.++|||||+++|.. +.+..... .+.+..+ .....+....+++.+||+||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 45899999999999999999986 44433211 1111111 123334455688999999999999988
Q ss_pred cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714 88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR 167 (205)
Q Consensus 88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (205)
+..+++.+|++++|+|+.+....... .++..+... ++|.++++||+|+...+.... .++...+..
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~~--gip~IVviNKiD~~~a~~~~v-----------l~ei~~l~~ 149 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFAY--GLKPIVVINKVDRPGARPDWV-----------VDQVFDLFV 149 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHHc--CCCEEEEEECcCCCCCchhHH-----------HHHHHHHHh
Confidence 88899999999999999876444332 344444444 899999999999876543211 112222211
Q ss_pred -------HcCCceEEEcccCCCC----------CHHHHHHHHHHHHHh
Q psy15714 168 -------KIKAAEYLECSAKLNE----------GLDQVFIAAVRSAVK 198 (205)
Q Consensus 168 -------~~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~ 198 (205)
... .|++.+||.+|+ |+..+|+.|++.+..
T Consensus 150 ~l~~~~~~~~-~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 150 NLDATDEQLD-FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred ccCccccccC-CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 122 348999999998 588999888877643
No 210
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=2.8e-18 Score=127.94 Aligned_cols=168 Identities=16% Similarity=0.069 Sum_probs=110.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC--------CCCCC-----cCcc---cccc-ceeEEECCEEEEEEEEEcCCCcccccc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK--------FPTDY-----VPTV---FDNY-PDTITVDNKTYDVTLWDTAGQEDYERL 87 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~--------~~~~~-----~~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 87 (205)
+|+++|..|+|||||+++++... ..... .+.. +... .....+.....++.+||+||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 48999999999999999987531 11100 0000 0011 112223334578999999999998887
Q ss_pred cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh---hh---------------
Q psy15714 88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID---KK--------------- 149 (205)
Q Consensus 88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~--------------- 149 (205)
....++.+|++++|+|+++...... ..|...+... ++|+++++||+|+...+...- ..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 7888999999999999998755432 2566666555 899999999999875322100 00
Q ss_pred ---------------------------hhhccccccHHHHH----HHHHHcCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 150 ---------------------------KAAEVDLVSTSQGK----KMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 150 ---------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
+......++.++.. .........|++..||.++.|++.+++.+.+.+
T Consensus 157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 11112234434432 222334566788899999999999999998765
No 211
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=3.9e-18 Score=141.50 Aligned_cols=169 Identities=19% Similarity=0.183 Sum_probs=103.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCc----CccccccceeEE---ECCEEE----------EEEEEEcCCCc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYV----PTVFDNYPDTIT---VDNKTY----------DVTLWDTAGQE 82 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~----~t~~~~~~~~~~---~~~~~~----------~~~i~D~~g~~ 82 (205)
..+...|+++|.+++|||||++++.+..+..... ++++..+..... ..+... .+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 3466789999999999999999998765432222 223322211000 011111 27899999999
Q ss_pred ccccccccCcCCCcEEEEEEECCC---cchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhh---hhh-----
Q psy15714 83 DYERLRPMSYPNTDCFLLCFSIGS---TSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDK---KKA----- 151 (205)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~----- 151 (205)
.|..++...+..+|++++|+|+++ +.++..+ ..+... ++|+++++||+|+......... .+.
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 999888888899999999999987 3444333 223333 8999999999998532110000 000
Q ss_pred -----------------hccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 152 -----------------AEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 152 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
+....+..+.........+..+++++||.+|+|++++++.+...
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 00000000000000011233558999999999999999887643
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.79 E-value=2.4e-18 Score=143.41 Aligned_cols=158 Identities=20% Similarity=0.142 Sum_probs=103.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC---CCCCC--cCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK---FPTDY--VPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~---~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
-|.++|..++|||||++++.+.. +.+.. -.|+...+......++ ..+.+||+||++.|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 58899999999999999998633 22111 1111111111111123 34899999999998776666788999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC--ceEEE
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA--AEYLE 176 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 176 (205)
+|+|+++...-+.. +.+..+... ++| ++||+||+|+.+.... ....++...+....+. .++++
T Consensus 80 LVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~~----------~~v~~ei~~~l~~~~~~~~~ii~ 145 (614)
T PRK10512 80 LVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEARI----------AEVRRQVKAVLREYGFAEAKLFV 145 (614)
T ss_pred EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHHH----------HHHHHHHHHHHHhcCCCCCcEEE
Confidence 99999875332222 333444433 566 5799999999753211 1123445555554442 45999
Q ss_pred cccCCCCCHHHHHHHHHHHHHh
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
+||++|+|++++++.|.+....
T Consensus 146 VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 146 TAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred EeCCCCCCCHHHHHHHHHhhcc
Confidence 9999999999999999875443
No 213
>KOG0077|consensus
Probab=99.79 E-value=1.3e-19 Score=122.89 Aligned_cols=172 Identities=17% Similarity=0.240 Sum_probs=122.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+.-|++++|..++|||||++.+.++...+ +.||.-.. +....+.| .+++.+|++||..-+..|..++..+|++|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 455699999999999999999999988744 34544333 23456777 779999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce--EEEc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE--YLEC 177 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 177 (205)
.+|+-|.+.+.+...++-..+.... .++|+++.+||+|...+....+........+.+--.+.......+..+ .+.|
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 9999999999998866655554433 699999999999998765333322222211111111111111112222 6889
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q psy15714 178 SAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~ 196 (205)
|...+.|..+.|.|+.+.+
T Consensus 174 si~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEccCccceeeeehhhhc
Confidence 9999988888888876643
No 214
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=131.25 Aligned_cols=164 Identities=21% Similarity=0.192 Sum_probs=121.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCCcCccccccceeEEECCEEEEEEEEEcCCCcc----------cccc-
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENK--FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----------YERL- 87 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~- 87 (205)
...+||+++|.|++|||||+|++.+.+ +..+...|+.+.....+..+++. +.++||+|-.+ |...
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~r 253 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVAR 253 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehh
Confidence 467999999999999999999999864 34566677777777778888865 66679999432 2221
Q ss_pred cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714 88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR 167 (205)
Q Consensus 88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (205)
....+..+|++++|+|++.+-+-++. .....+.+. +.+++||.||+|+...+.... .....+.+....
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~--------~~~k~~i~~~l~ 321 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDEATM--------EEFKKKLRRKLP 321 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchhhHH--------HHHHHHHHHHhc
Confidence 12347789999999999988776665 566777766 899999999999877531000 112223344445
Q ss_pred HcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 168 KIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
..+..+.+.+||+++.+++++|+.+......
T Consensus 322 ~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 322 FLDFAPIVFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred cccCCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence 5577779999999999999999998877554
No 215
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.79 E-value=6.8e-18 Score=124.78 Aligned_cols=164 Identities=20% Similarity=0.142 Sum_probs=99.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc-----------------------ccccc----------------eeEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-----------------------FDNYP----------------DTIT 65 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~-----------------------~~~~~----------------~~~~ 65 (205)
||+++|+.++|||||+.+|..+.+........ +.... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999876643111000 00000 0011
Q ss_pred ECCEEEEEEEEEcCCCcccccccccCc--CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 66 VDNKTYDVTLWDTAGQEDYERLRPMSY--PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 66 ~~~~~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
. ....+.+.|+||+.+|.......+ ..+|++++|+|+.....-.. ..++..+... ++|+++|+||+|+....
T Consensus 81 ~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 K--SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPAN 154 (224)
T ss_pred e--CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHH
Confidence 1 134688899999998865443334 36899999999887654333 2566666655 79999999999986543
Q ss_pred hhhhhhh----hhcc--------ccccHHHHHHHHHH---cCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714 144 KTIDKKK----AAEV--------DLVSTSQGKKMRRK---IKAAEYLECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 144 ~~~~~~~----~~~~--------~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~ 194 (205)
....... .... ...+.+++...+.. ....|++.+||.+|+|++++...|..
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 2111110 0000 00001111111111 12446999999999999999987753
No 216
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.79 E-value=1.9e-18 Score=143.45 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=108.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc--CCCCCCCcCc------------ccccc-ceeEEECCEEEEEEEEEcCCCcccccccc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE--NKFPTDYVPT------------VFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRP 89 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~--~~~~~~~~~t------------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 89 (205)
+|+++|+.++|||||+.+++. +.+......+ .+... .....+....+++.||||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 689999999999999999985 4443221000 01111 12222333457899999999999988888
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH--
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR-- 167 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 167 (205)
..++.+|++++|+|+.+...... . .|+..+... ++|+++|+||+|+...+.. .+ .++...+..
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~qT-~-~~l~~a~~~--~ip~IVviNKiD~~~a~~~----------~v-~~ei~~l~~~~ 147 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQT-R-FVLKKALEL--GLKPIVVINKIDRPSARPD----------EV-VDEVFDLFAEL 147 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHHH-H-HHHHHHHHC--CCCEEEEEECCCCCCcCHH----------HH-HHHHHHHHHhh
Confidence 88999999999999987543222 2 566666655 8999999999998654321 11 122222221
Q ss_pred -----HcCCceEEEcccCCCC----------CHHHHHHHHHHHHHh
Q psy15714 168 -----KIKAAEYLECSAKLNE----------GLDQVFIAAVRSAVK 198 (205)
Q Consensus 168 -----~~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~ 198 (205)
.... +++.+||++|. |++.+|+.+++.+..
T Consensus 148 g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 148 GADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 1233 48999999996 799999999887654
No 217
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.78 E-value=2.9e-18 Score=125.85 Aligned_cols=152 Identities=14% Similarity=0.020 Sum_probs=91.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCC----------------------cCc-----ccccc-ceeEEECCEEEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK--FPTDY----------------------VPT-----VFDNY-PDTITVDNKTYDVT 74 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~--~~~~~----------------------~~t-----~~~~~-~~~~~~~~~~~~~~ 74 (205)
||+++|.+++|||||+++++... ..... ... .+... .....+.....++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999987432 11000 000 00000 00111222234688
Q ss_pred EEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhcc
Q psy15714 75 LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEV 154 (205)
Q Consensus 75 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 154 (205)
+|||||+.+|.......+..+|++++|+|+++...-... .+...+... ...++++|+||+|+........
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~~~------- 150 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEEVF------- 150 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHHHH-------
Confidence 999999988765555578899999999999876432221 222233332 1245788999999864321000
Q ss_pred ccccHHHHHHHHHHcCC--ceEEEcccCCCCCHHH
Q psy15714 155 DLVSTSQGKKMRRKIKA--AEYLECSAKLNEGLDQ 187 (205)
Q Consensus 155 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 187 (205)
.....+.+.+.+.++. .+++.+||++|.|+++
T Consensus 151 -~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 151 -EEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred -HHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 1123345556666664 3489999999999875
No 218
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.78 E-value=5.6e-18 Score=123.31 Aligned_cols=173 Identities=14% Similarity=0.138 Sum_probs=102.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccc-ccc-eeEEEC-CEEEEEEEEEcCCCccccc-----ccccCcCC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFD-NYP-DTITVD-NKTYDVTLWDTAGQEDYER-----LRPMSYPN 94 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~-~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~-----~~~~~~~~ 94 (205)
++||+++|.+|+|||||+|++.+.........+.+. ... ....+. .....+.+||+||...... +....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999986543322222221 011 011111 1123689999999643211 12334678
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhh---hccccccHHHHHHHHHH--c
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKA---AEVDLVSTSQGKKMRRK--I 169 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~ 169 (205)
+|+++++.+ . ++......|+..+... +.|+++|+||+|+............ .+..+...+........ .
T Consensus 81 ~d~~l~v~~-~---~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISS-T---RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeC-C---CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 899888743 2 2334444677777776 7899999999999543221100000 00000111122222222 2
Q ss_pred CCceEEEcccC--CCCCHHHHHHHHHHHHHhhcc
Q psy15714 170 KAAEYLECSAK--LNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 170 ~~~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~~~ 201 (205)
...+++.+|+. .++++..+.+.++..+.+.++
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 34558999999 679999999999998877654
No 219
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.78 E-value=2.9e-18 Score=137.37 Aligned_cols=165 Identities=19% Similarity=0.123 Sum_probs=102.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCc------Cccccc-----------------cceeEEEC------CEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYV------PTVFDN-----------------YPDTITVD------NKT 70 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~------~t~~~~-----------------~~~~~~~~------~~~ 70 (205)
....++|+++|+.++|||||+.++.+... +... .|.... +......+ +..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~-d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWT-DRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeec-ccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 45679999999999999999999865311 1111 011000 00000001 113
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhh
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK 149 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 149 (205)
..+.+||+||++.|..........+|++++|+|+++.. ..... ..+..+... ...|+++|+||+|+.+....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~--~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~---- 157 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK--EHLMALDII-GIKNIVIVQNKIDLVSKERA---- 157 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH--HHHHHHHHc-CCCcEEEEEEeeccccchhH----
Confidence 57999999999988765555667789999999999653 22221 122223222 12468999999999754311
Q ss_pred hhhccccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 150 KAAEVDLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
....++...+.+.. ...+++++||++|+|++++++.|.+.+..
T Consensus 158 ------~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 158 ------LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ------HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 11123334444332 22458999999999999999999886643
No 220
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=7.3e-18 Score=132.46 Aligned_cols=154 Identities=27% Similarity=0.273 Sum_probs=113.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc--------ccc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL--------RPM 90 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 90 (205)
..-+|++++|.|++|||||+|+|.+..- ..+...|+.+.....+.++| +.+.+.||+|-.+.... ...
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 4568999999999999999999998653 46667777777777888899 66888899996543322 123
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
.+..+|.+++|+|.+.+.+-.+.. .+. ....+.|+++|.||.||..... .... +...
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~--------------~~~~----~~~~ 349 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIE--------------LESE----KLAN 349 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHH--HHH---hcccCCCEEEEEechhcccccc--------------cchh----hccC
Confidence 578999999999999864333332 222 2335899999999999987531 1111 1112
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
-.+++.+||++++|++.+.+.|.+.+...
T Consensus 350 ~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 350 GDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred CCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 22489999999999999999999887765
No 221
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.76 E-value=3.9e-18 Score=125.58 Aligned_cols=168 Identities=18% Similarity=0.223 Sum_probs=102.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEE-CCEEEEEEEEEcCCCccccc-----ccccCcCCCcE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITV-DNKTYDVTLWDTAGQEDYER-----LRPMSYPNTDC 97 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~~~ 97 (205)
||+++|+.++||||+.+.++++..+..+.. .+... .....+ ....+.+.+||+||+..+-. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~-L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLR-LEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG------SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccc-cCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999998888765443321 12221 111112 12336899999999976433 34567899999
Q ss_pred EEEEEECCCcchHHHHH--HHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC--Cce
Q psy15714 98 FLLCFSIGSTSSYENIL--SKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK--AAE 173 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 173 (205)
+|||+|+.+.+-.+++. ...+..+.++.+++.+-|+++|+|+..+....... ....+.....+...+ ...
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~------~~~~~~i~~~~~~~~~~~~~ 153 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIF------RDIQQRIRDELEDLGIEDIT 153 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHH------HHHHHHHHHHHHHTT-TSEE
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHH------HHHHHHHHHHhhhccccceE
Confidence 99999998544333332 13445555666999999999999997655433322 112233444444444 233
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
++.||.-+ +.+-++|..+++.++...
T Consensus 154 ~~~TSI~D-~Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 154 FFLTSIWD-ESLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp EEEE-TTS-THHHHHHHHHHHTTSTTH
T ss_pred EEeccCcC-cHHHHHHHHHHHHHcccH
Confidence 77777776 799999999999877643
No 222
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=3.6e-17 Score=118.46 Aligned_cols=150 Identities=17% Similarity=0.117 Sum_probs=96.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC---------C--CCcCcc---cccc-ceeEEECCEEEEEEEEEcCCCcccccc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFP---------T--DYVPTV---FDNY-PDTITVDNKTYDVTLWDTAGQEDYERL 87 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~---------~--~~~~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 87 (205)
.++|+++|..++|||||+++++..... . ...+.. +... .....+.....++.+.|+||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 478999999999999999998753100 0 000000 1111 111223333457889999999888766
Q ss_pred cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH
Q psy15714 88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR 166 (205)
Q Consensus 88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (205)
....+..+|++++|+|+.....-... .++..+... ++| +++++||+|+....... ....++...+.
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~---------~~~~~~i~~~l 148 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTR--EHLLLARQV--GVPYIVVFLNKADMVDDEELL---------ELVEMEVRELL 148 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCcEEEEEeCCCCCCcHHHH---------HHHHHHHHHHH
Confidence 66778899999999999875433322 344555554 677 78999999986422100 12234555555
Q ss_pred HHcCC----ceEEEcccCCCCCH
Q psy15714 167 RKIKA----AEYLECSAKLNEGL 185 (205)
Q Consensus 167 ~~~~~----~~~~~~Sa~~~~~i 185 (205)
+..+. .+++.+||.+|+|+
T Consensus 149 ~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 149 SKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHhcccccCCeEEEeeCccccCC
Confidence 55543 56999999999985
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.74 E-value=2.3e-17 Score=121.94 Aligned_cols=154 Identities=11% Similarity=0.017 Sum_probs=90.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCC--------------C--------CcCcc-----cccc-ceeEEECCEEEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN--KFPT--------------D--------YVPTV-----FDNY-PDTITVDNKTYDVT 74 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~--~~~~--------------~--------~~~t~-----~~~~-~~~~~~~~~~~~~~ 74 (205)
+|+++|+.++|||||+.+++.. .... . ...+. +... .....+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999888632 1110 0 00000 0000 01122223346799
Q ss_pred EEEcCCCcccccccccCcCCCcEEEEEEECCCcch------HHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhh
Q psy15714 75 LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSS------YENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDK 148 (205)
Q Consensus 75 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 148 (205)
+||+||+..|.......+..+|++++|+|+++... .......| ...... ...|+++++||+|+.........
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL-GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc-CCCeEEEEEEccccccccccHHH
Confidence 99999998877666667788999999999988421 11122122 222222 24689999999999742100000
Q ss_pred hhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHH
Q psy15714 149 KKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLD 186 (205)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~ 186 (205)
. ....++.....+..+. .+++++||++|+|++
T Consensus 159 ~------~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 Y------DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred H------HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 0 1112233334444443 459999999999986
No 224
>KOG1489|consensus
Probab=99.73 E-value=1.7e-16 Score=118.71 Aligned_cols=156 Identities=19% Similarity=0.235 Sum_probs=111.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccccc-------ccCcC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR-------PMSYP 93 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~~~~ 93 (205)
.-..+.++|.|++|||||++++...+. ...|..|+-....-.+.+++. .++++-|+||-.+--... =..++
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHH
Confidence 344578999999999999999998764 244555553333223444432 248888999954322221 12467
Q ss_pred CCcEEEEEEECCCc---chHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714 94 NTDCFLLCFSIGST---SSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR 167 (205)
Q Consensus 94 ~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (205)
.++.++||+|++.. .-++.+. .+...++.+. .+.|.++|+||+|+.+.. .+...++++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~-lL~~ELe~yek~L~~rp~liVaNKiD~~eae---------------~~~l~~L~~ 337 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQ-LLIEELELYEKGLADRPALIVANKIDLPEAE---------------KNLLSSLAK 337 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHH-HHHHHHHHHhhhhccCceEEEEeccCchhHH---------------HHHHHHHHH
Confidence 79999999999988 7777765 5666666655 689999999999986432 122466777
Q ss_pred HcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714 168 KIKAAEYLECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 194 (205)
.+...+++++||++++|+.++++.+.+
T Consensus 338 ~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 338 RLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HcCCCcEEEeeeccccchHHHHHHHhh
Confidence 777767999999999999999887654
No 225
>PRK12736 elongation factor Tu; Reviewed
Probab=99.73 E-value=1.1e-16 Score=127.88 Aligned_cols=165 Identities=13% Similarity=0.077 Sum_probs=106.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC---------CCcCcc-----cccc-ceeEEECCEEEEEEEEEcCCCccc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPT---------DYVPTV-----FDNY-PDTITVDNKTYDVTLWDTAGQEDY 84 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~---------~~~~t~-----~~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 84 (205)
.+..++|+++|+.++|||||++++++..... ..+.+. +... .....+.....++.++|+||+.+|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 5667999999999999999999998531100 000000 1111 111223333457889999999988
Q ss_pred ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHH
Q psy15714 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK 163 (205)
Q Consensus 85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (205)
.......+..+|++++|+|+.+...-... +++..+... ++| +++++||+|+.+..... ....++..
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~---------~~i~~~i~ 155 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQV--GVPYLVVFLNKVDLVDDEELL---------ELVEMEVR 155 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCEEEEEEEecCCcchHHHH---------HHHHHHHH
Confidence 76666667889999999999875433332 344455544 788 67899999987432110 11223455
Q ss_pred HHHHHcCC----ceEEEcccCCCC--------CHHHHHHHHHHHHH
Q psy15714 164 KMRRKIKA----AEYLECSAKLNE--------GLDQVFIAAVRSAV 197 (205)
Q Consensus 164 ~~~~~~~~----~~~~~~Sa~~~~--------~i~~~~~~i~~~~~ 197 (205)
.+.+..+. .+++.+||.+|. ++.++++.+.+.+.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 55555543 469999999983 57888888776654
No 226
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.72 E-value=1.2e-16 Score=117.74 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=78.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCCcC------cc------cccc-c--eeEEEC--------CEEEEEEEEEcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK--FPTDYVP------TV------FDNY-P--DTITVD--------NKTYDVTLWDTA 79 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~--~~~~~~~------t~------~~~~-~--~~~~~~--------~~~~~~~i~D~~ 79 (205)
+|+++|..++|||||+.+|.... +...... .. +... . ....+. +..+.+.+||+|
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999987432 1110000 00 0000 0 011122 447889999999
Q ss_pred CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR 140 (205)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 140 (205)
|+..|.......++.+|++++|+|+++..+.+.. .++...... ++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALKE--RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCcc
Confidence 9999998888899999999999999987665543 333333333 78999999999986
No 227
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.5e-16 Score=126.78 Aligned_cols=165 Identities=22% Similarity=0.221 Sum_probs=112.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
.++.=|+++|+..-|||||+.++...........-+.... -..+..+ +....+.++|||||+.|..++.+-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 3556789999999999999999988776543222221111 1233332 1234688899999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc-CCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI-KAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 177 (205)
|+|++++|.-.-+.. +-+..++.. ++|++|+.||+|....++.....+.... .+ .+..+ +...++++
T Consensus 83 ILVVa~dDGv~pQTi--EAI~hak~a--~vP~iVAiNKiDk~~~np~~v~~el~~~-gl-------~~E~~gg~v~~Vpv 150 (509)
T COG0532 83 ILVVAADDGVMPQTI--EAINHAKAA--GVPIVVAINKIDKPEANPDKVKQELQEY-GL-------VPEEWGGDVIFVPV 150 (509)
T ss_pred EEEEEccCCcchhHH--HHHHHHHHC--CCCEEEEEecccCCCCCHHHHHHHHHHc-CC-------CHhhcCCceEEEEe
Confidence 999999986443333 233344444 9999999999999866543221111111 11 11122 22448999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy15714 178 SAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~ 197 (205)
||++|+|+++|++.+.-..-
T Consensus 151 SA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 151 SAKTGEGIDELLELILLLAE 170 (509)
T ss_pred eccCCCCHHHHHHHHHHHHH
Confidence 99999999999998776543
No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=99.72 E-value=1.7e-16 Score=126.81 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=105.5
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcC-------CCC--CCCcCcc---ccccc---eeEEECCEEEEEEEEEcCCCcc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTEN-------KFP--TDYVPTV---FDNYP---DTITVDNKTYDVTLWDTAGQED 83 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~-------~~~--~~~~~t~---~~~~~---~~~~~~~~~~~~~i~D~~g~~~ 83 (205)
..+..++|+++|.+++|||||+++++.. .+. ...+.+. ....+ ....+.....++.++|+||+..
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 3466799999999999999999999862 110 0001111 00111 1112223345788999999988
Q ss_pred cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEE-EEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPII-LVGTKADLRSENKTIDKKKAAEVDLVSTSQG 162 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (205)
|.......+..+|++++|+|+.+....... +++..+... ++|.+ +++||+|+...... .....++.
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~---------~~~~~~ei 154 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEEL---------LELVEMEV 154 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHHH---------HHHHHHHH
Confidence 876666678899999999999875433222 344444444 78866 57999999642210 01223455
Q ss_pred HHHHHHcCC----ceEEEcccCCCC----------CHHHHHHHHHHHH
Q psy15714 163 KKMRRKIKA----AEYLECSAKLNE----------GLDQVFIAAVRSA 196 (205)
Q Consensus 163 ~~~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~ 196 (205)
..+.+..+. .+++++||.+|+ ++.++++.+.+.+
T Consensus 155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 666666543 458999999984 6778887777654
No 229
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.72 E-value=1e-15 Score=114.97 Aligned_cols=162 Identities=21% Similarity=0.160 Sum_probs=117.1
Q ss_pred cccccccceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccc-------
Q psy15714 14 DVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE------- 85 (205)
Q Consensus 14 ~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------- 85 (205)
..-.........++++|+|.+|||||++++++.+. ...|..|+....+-...++| .++++.|+||--.--
T Consensus 54 ~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG 131 (365)
T COG1163 54 SGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRG 131 (365)
T ss_pred CcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCc
Confidence 44455666778999999999999999999998765 35677787777777888888 668888999842211
Q ss_pred cccccCcCCCcEEEEEEECCCcch-HHHHHH-------------------------------------------------
Q psy15714 86 RLRPMSYPNTDCFLLCFSIGSTSS-YENILS------------------------------------------------- 115 (205)
Q Consensus 86 ~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~------------------------------------------------- 115 (205)
...-...++||++++|.|+....+ .+.+..
T Consensus 132 ~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey 211 (365)
T COG1163 132 RQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREY 211 (365)
T ss_pred ceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHh
Confidence 112346899999999999985543 222211
Q ss_pred ----------------HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 116 ----------------KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 116 ----------------~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
.+++.+......+|.++|.||.|+.. .++...+.+.. ..+.+||
T Consensus 212 ~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----------------~e~~~~l~~~~---~~v~isa 271 (365)
T COG1163 212 RIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----------------LEELERLARKP---NSVPISA 271 (365)
T ss_pred CcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----------------HHHHHHHHhcc---ceEEEec
Confidence 33333333334679999999999765 33444454444 3889999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy15714 180 KLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~ 197 (205)
..+.|++++.+.|.+.+-
T Consensus 272 ~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 272 KKGINLDELKERIWDVLG 289 (365)
T ss_pred ccCCCHHHHHHHHHHhhC
Confidence 999999999999988753
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.71 E-value=1.9e-16 Score=126.69 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=97.3
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCC------------CCCCcCc--ccccc-ceeEEECCEEEEEEEEEcCCCcc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKF------------PTDYVPT--VFDNY-PDTITVDNKTYDVTLWDTAGQED 83 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~------------~~~~~~t--~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 83 (205)
..++.++|+++|..++|||||+++|+.... .+..... .+... ...+.+.....++.+||+||+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 356779999999999999999999974210 0000000 01111 11233344456789999999998
Q ss_pred cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEE-EEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPII-LVGTKADLRSENKTIDKKKAAEVDLVSTSQG 162 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (205)
|.......+..+|++++|+|+.+....... +.+..+... ++|.+ +++||+|+.+..... ....++.
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~---------~~~~~~i 154 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELL---------ELVEMEV 154 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHHHH---------HHHHHHH
Confidence 876655567788999999999875333322 334444444 78865 689999987532110 1123456
Q ss_pred HHHHHHcCC----ceEEEcccCCCC
Q psy15714 163 KKMRRKIKA----AEYLECSAKLNE 183 (205)
Q Consensus 163 ~~~~~~~~~----~~~~~~Sa~~~~ 183 (205)
+.+.+..+. .+++++||.++.
T Consensus 155 ~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 155 RELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHhcCCCccCccEEECcccccc
Confidence 666666653 459999999875
No 231
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.6e-16 Score=130.00 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=113.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccc------ccccC-c-
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER------LRPMS-Y- 92 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~-~- 92 (205)
+..+|+++|+|++|||||+|++++... ..+.+..+.+..+-.....+.. +++.|+||-..... ..+.+ +
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 346799999999999999999998654 4555555554444455566654 77889999543322 22233 3
Q ss_pred CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714 93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172 (205)
Q Consensus 93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (205)
...|++|-|.|+++.+.--. +--++.+. +.|++++.|++|.... .-..-+.+.+.+.++++
T Consensus 80 ~~~D~ivnVvDAtnLeRnLy----ltlQLlE~--g~p~ilaLNm~D~A~~-------------~Gi~ID~~~L~~~LGvP 140 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLY----LTLQLLEL--GIPMILALNMIDEAKK-------------RGIRIDIEKLSKLLGVP 140 (653)
T ss_pred CCCCEEEEEcccchHHHHHH----HHHHHHHc--CCCeEEEeccHhhHHh-------------cCCcccHHHHHHHhCCC
Confidence 45799999999998765333 33344455 8999999999998875 33445567788888998
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
++++||++|.|++++.+.+++....
T Consensus 141 -Vv~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 141 -VVPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred -EEEEEeecCCCHHHHHHHHHHhccc
Confidence 9999999999999999988865443
No 232
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=6.6e-16 Score=109.32 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=107.5
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccce-eEEECCEEEEEEEEEcCC----------Ccccccc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAG----------QEDYERL 87 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g----------~~~~~~~ 87 (205)
......-|+++|.+++|||||||++++.+--.....|.|..... -+.+++. +.+.|.|| .+.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 34466789999999999999999999977444445555555532 3344442 77789999 3334444
Q ss_pred cccCcC---CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH-
Q psy15714 88 RPMSYP---NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK- 163 (205)
Q Consensus 88 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~- 163 (205)
...|++ +..++++++|+-..-...+. +.+..+.+. ++|++|++||+|......... ......
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k----------~l~~v~~ 162 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSERNK----------QLNKVAE 162 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhHHHH----------HHHHHHH
Confidence 344443 36788888998766554443 566777776 999999999999876531100 011111
Q ss_pred HHHHHcCCce-EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 164 KMRRKIKAAE-YLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 164 ~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
.+.......+ ++..|+.++.|++++...|.+.+..
T Consensus 163 ~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 163 ELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 2221122111 6789999999999999998887654
No 233
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.70 E-value=8e-18 Score=118.92 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=77.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCccccccccc---CcCCCcEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPM---SYPNTDCFL 99 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~~~~i 99 (205)
.-.|+++|++|+|||+|+.+|..++..+...+. .......+ -......+.+.|+|||.+.+..... +...+.++|
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 346899999999999999999999765543333 22211111 1123346888899999998875433 378899999
Q ss_pred EEEECCC-cchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchh
Q psy15714 100 LCFSIGS-TSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKT 145 (205)
Q Consensus 100 ~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~ 145 (205)
||+|.+. ...+.+..+++++.+.... ..+|++|+.||+|+....+.
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~ 130 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPP 130 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---H
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCH
Confidence 9999874 4566666667777775543 68999999999999876543
No 234
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.70 E-value=6e-16 Score=117.85 Aligned_cols=114 Identities=20% Similarity=0.170 Sum_probs=76.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCc-----Ccc-----------cccc-ceeEEECCEEEEEEEEEcCCCcccccc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYV-----PTV-----------FDNY-PDTITVDNKTYDVTLWDTAGQEDYERL 87 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~-----~t~-----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 87 (205)
+|+++|.+|+|||||++++....-..... .+. +... .....+....+.+.+||+||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 48999999999999999987532110000 000 0000 011112223367899999999888777
Q ss_pred cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
....+..+|++++|+|+++........ .| ..+... ++|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~-~~~~~~--~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEK-LW-EFADEA--GIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HH-HHHHHc--CCCEEEEEECCccCCC
Confidence 777889999999999999876554332 33 334444 7999999999998654
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=9.5e-16 Score=116.74 Aligned_cols=143 Identities=17% Similarity=0.138 Sum_probs=87.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC----------CcCccccc-cceeEEECCEEEEEEEEEcCCCccc------
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTD----------YVPTVFDN-YPDTITVDNKTYDVTLWDTAGQEDY------ 84 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~----------~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~------ 84 (205)
..++|+|+|.+|+|||||++++++..+... ..+|.... ....+..+|..+++.+|||||-...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876543 22222221 1234556788889999999993221
Q ss_pred --------------------ccccccCcCC--CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 85 --------------------ERLRPMSYPN--TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 85 --------------------~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
...+...+.. +++++|+++.+.. .+......++..+. ..+|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCH
Confidence 1112133443 5666666665542 22222113444444 37999999999999653
Q ss_pred chhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
... ....+..++.+...++. ++....
T Consensus 159 ~e~----------~~~k~~i~~~l~~~~i~-~~~~~~ 184 (276)
T cd01850 159 EEL----------KEFKQRIMEDIEEHNIK-IYKFPE 184 (276)
T ss_pred HHH----------HHHHHHHHHHHHHcCCc-eECCCC
Confidence 321 22344556666666665 555443
No 236
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2e-16 Score=116.53 Aligned_cols=177 Identities=16% Similarity=0.163 Sum_probs=116.8
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc--ceeEEECCEEEEEEEEEcCCCcc-------ccccc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY--PDTITVDNKTYDVTLWDTAGQED-------YERLR 88 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~ 88 (205)
......++|+++|..|+|||||||+++++...+-..-..+.+. .....+++ -.+.|||+||-.+ |+...
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~ 111 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLY 111 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHH
Confidence 3456789999999999999999999997665432211111111 12233445 3599999999543 77777
Q ss_pred ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh---hhhhhccccccHHHHHHH
Q psy15714 89 PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID---KKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 89 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~ 165 (205)
..+++..|.++++.++.|+.--.+.. +|.+.+.. .-+.++++++|.+|.......+. .......++...+.++..
T Consensus 112 ~d~l~~~DLvL~l~~~~draL~~d~~-f~~dVi~~-~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRALGTDED-FLRDVIIL-GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HHHhhhccEEEEeccCCCccccCCHH-HHHHHHHh-ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 78899999999999999986443433 45444433 33699999999999876531111 111111223333344443
Q ss_pred HHHc-CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 166 RRKI-KAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 166 ~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
.+.. ...|++..|...++|++++...++..+-.
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 3333 35568888899999999999999987654
No 237
>CHL00071 tufA elongation factor Tu
Probab=99.68 E-value=1e-15 Score=122.87 Aligned_cols=153 Identities=16% Similarity=0.115 Sum_probs=97.5
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCC---------CCcCccc---cccc---eeEEECCEEEEEEEEEcCCCcc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPT---------DYVPTVF---DNYP---DTITVDNKTYDVTLWDTAGQED 83 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~---------~~~~t~~---~~~~---~~~~~~~~~~~~~i~D~~g~~~ 83 (205)
..+..++|+++|.+++|||||+++++...-.. ..+.+.. ...+ ....+.....++.+.|+||+..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 35667999999999999999999998642100 0000000 0000 1112223335678899999988
Q ss_pred cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQG 162 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (205)
|-......+..+|++++|+|+.....-... +.+..+... ++| +++++||+|+.+..... ....++.
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt~--~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~---------~~~~~~l 154 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQTK--EHILLAKQV--GVPNIVVFLNKEDQVDDEELL---------ELVELEV 154 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEccCCCCHHHHH---------HHHHHHH
Confidence 766666678899999999999865433222 344455544 788 77899999997532110 1123455
Q ss_pred HHHHHHcCC----ceEEEcccCCCCC
Q psy15714 163 KKMRRKIKA----AEYLECSAKLNEG 184 (205)
Q Consensus 163 ~~~~~~~~~----~~~~~~Sa~~~~~ 184 (205)
..+.+..+. .+++.+||.+|++
T Consensus 155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 155 RELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHhCCCCCcceEEEcchhhccc
Confidence 555555543 5699999999874
No 238
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.68 E-value=8.3e-16 Score=116.54 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=78.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCC-C------cCcccccc------------ceeEEECCEEEEEEEEEcCCCcc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN--KFPTD-Y------VPTVFDNY------------PDTITVDNKTYDVTLWDTAGQED 83 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~--~~~~~-~------~~t~~~~~------------~~~~~~~~~~~~~~i~D~~g~~~ 83 (205)
+|+++|++|+|||||+++++.. ..... . ..+...++ .....+....+++.+||+||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 6999999999999999998742 21110 0 00000000 11223444557899999999998
Q ss_pred cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
|.......++.+|++|+|+|+++...... ..+....... ++|+++++||+|+....
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCCC
Confidence 87766667889999999999987643222 2444444444 89999999999986543
No 239
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.4e-15 Score=114.58 Aligned_cols=160 Identities=22% Similarity=0.177 Sum_probs=108.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCcc--ccccc-------ccC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED--YERLR-------PMS 91 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~-------~~~ 91 (205)
....|+|.|.|++|||||+++++..+. ...|+.|+.......+..++ ..++++||||--+ ....+ -..
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 446899999999999999999998765 35566665444333333344 5788999999321 11111 112
Q ss_pred cCCCcEEEEEEECCCc--chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714 92 YPNTDCFLLCFSIGST--SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI 169 (205)
Q Consensus 92 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (205)
-.-.++++|++|.+.. -+.+... .++..++.... .|+++|.||+|..+.. . .+++.......
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~--~~~~~~~~~~~ 308 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKELFK-APIVVVINKIDIADEE------------K--LEEIEASVLEE 308 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHhcC-CCeEEEEecccccchh------------H--HHHHHHHHHhh
Confidence 2347899999999865 3566665 56677766664 9999999999987643 2 22333334444
Q ss_pred CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+......+++..+.+++.+-..+...+.+.
T Consensus 309 ~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 309 GGEEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ccccccceeeeehhhHHHHHHHHHHHhhch
Confidence 444467889999999998888887776554
No 240
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.67 E-value=1.6e-15 Score=124.51 Aligned_cols=119 Identities=16% Similarity=0.151 Sum_probs=80.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc--CCCCC---------------CCcCcc---cccc-ceeEEECCEEEEEEEEEcC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE--NKFPT---------------DYVPTV---FDNY-PDTITVDNKTYDVTLWDTA 79 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~--~~~~~---------------~~~~t~---~~~~-~~~~~~~~~~~~~~i~D~~ 79 (205)
.+.-+|+++|++++|||||+++++. +.... .+.+.. +..+ .....+....+++.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3456999999999999999999863 22110 000000 1111 1112233344779999999
Q ss_pred CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
|+..|.......++.+|++|+|+|+++...... ..++...... ++|+++++||+|+....
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~~--~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRLR--DTPIFTFINKLDRDGRE 147 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHhc--CCCEEEEEECCcccccC
Confidence 999988766667899999999999987643322 2444555444 89999999999987544
No 241
>PRK13351 elongation factor G; Reviewed
Probab=99.67 E-value=8.7e-16 Score=130.80 Aligned_cols=118 Identities=16% Similarity=0.140 Sum_probs=82.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC--CC------C-----CCcCc---ccccc-ceeEEECCEEEEEEEEEcCCCcc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENK--FP------T-----DYVPT---VFDNY-PDTITVDNKTYDVTLWDTAGQED 83 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~--~~------~-----~~~~t---~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 83 (205)
....+|+|+|..++|||||++++.... .. . .+.+. .+... .....+......+.+||+||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 345799999999999999999998521 10 0 00000 00001 11112223347899999999999
Q ss_pred cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
|......+++.+|++++|+|+++..+..... .| ..+... ++|+++++||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~-~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VW-RQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HH-HHHHhc--CCCEEEEEECCCCCCC
Confidence 8888888899999999999999877665542 34 444444 8999999999998765
No 242
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.66 E-value=4.9e-15 Score=112.17 Aligned_cols=162 Identities=22% Similarity=0.169 Sum_probs=109.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccc----cc---cccCcCCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE----RL---RPMSYPNT 95 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~---~~~~~~~~ 95 (205)
.-|.++|.|++|||||++++..-+. ...|..|+-...--.+.+++ .-.|.+-|+||-.+-- -+ +=..++.+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 3466899999999999999997654 35667766555443444422 2358888999954321 11 11236678
Q ss_pred cEEEEEEECCCcch---HHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714 96 DCFLLCFSIGSTSS---YENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI 169 (205)
Q Consensus 96 ~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (205)
.+++.|+|++..+. .++.. .+...+..+. .+.|.+||+||+|+.... .........+.+..
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~-~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~------------e~~~~~~~~l~~~~ 305 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQ-TIRNELEKYSPKLAEKPRIVVLNKIDLPLDE------------EELEELKKALAEAL 305 (369)
T ss_pred heeEEEEecCcccCCCHHHHHH-HHHHHHHHhhHHhccCceEEEEeccCCCcCH------------HHHHHHHHHHHHhc
Confidence 99999999986543 55554 6677777776 689999999999965443 22222334444444
Q ss_pred CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+....+.+||.+++|++++...+.+.+...
T Consensus 306 ~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 306 GWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 444233399999999999999988877654
No 243
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.65 E-value=2.2e-15 Score=114.30 Aligned_cols=114 Identities=16% Similarity=0.084 Sum_probs=76.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc--CCCCC-----------CCcCcc---cccc-ceeEEECCEEEEEEEEEcCCCcccccc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE--NKFPT-----------DYVPTV---FDNY-PDTITVDNKTYDVTLWDTAGQEDYERL 87 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~--~~~~~-----------~~~~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 87 (205)
+|+++|.+++|||||++++.. +.... .+.+.. +... .....+.....++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 489999999999999999873 21110 000000 0000 011111123367899999999888777
Q ss_pred cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
+...++.+|++++|+|+.+...-... .++..+... ++|+++++||+|+...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTE--TVWRQADRY--NVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 77889999999999999876543332 344445554 7999999999998753
No 244
>KOG0090|consensus
Probab=99.65 E-value=7.7e-16 Score=109.06 Aligned_cols=167 Identities=19% Similarity=0.188 Sum_probs=108.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcC---CCcEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYP---NTDCFLL 100 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~i~ 100 (205)
-.|+++|+.++|||+|+-++..+.+...+.+-.... -...+++. ..++.|.|||.+.+.....++. .+-++||
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~--a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNE--ATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeeccce--eeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 479999999999999999999886644333322221 12223332 2788899999998876555555 7899999
Q ss_pred EEECCC-cchHHHHHHHHHHHHhhh---CCCCCEEEEeeCcccccCchhhhhhhhhcc------------ccccHH----
Q psy15714 101 CFSIGS-TSSYENILSKWYPELKHH---CPKVPIILVGTKADLRSENKTIDKKKAAEV------------DLVSTS---- 160 (205)
Q Consensus 101 v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~---- 160 (205)
|+|... .....++.+++++.+... .+.+|++++.||.|+....+....+..+.. +.++.+
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 998663 345566666777777665 268999999999999766543322211110 011111
Q ss_pred ------HHH--HHHHHc-CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 161 ------QGK--KMRRKI-KAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 161 ------~~~--~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
++. +|+.-. .-..+.++|++++ +++++-+|+.+.
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 111 121111 1224889999999 999999998764
No 245
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.65 E-value=1.2e-15 Score=124.27 Aligned_cols=159 Identities=13% Similarity=0.044 Sum_probs=94.7
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCC----------cCcc-----------------ccccce---eEEE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTEN--KFPTDY----------VPTV-----------------FDNYPD---TITV 66 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~----------~~t~-----------------~~~~~~---~~~~ 66 (205)
..+..++|+++|..++|||||+.+++.. .+.... ..+. ....+. ...+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 4577799999999999999999988743 111100 0000 000011 1112
Q ss_pred CCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhh
Q psy15714 67 DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTI 146 (205)
Q Consensus 67 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 146 (205)
.....++.++|+||+..|.......+..+|++++|+|+.....-... +....+... ...|+++++||+|+...+...
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~--~~~~l~~~l-g~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR--RHSFIATLL-GIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch--HHHHHHHHh-CCCceEEEEEeeccccchhHH
Confidence 23345788999999988865545557999999999999765322111 111222222 124789999999987432100
Q ss_pred hhhhhhccccccHHHHHHHHHHcC---CceEEEcccCCCCCHHHH
Q psy15714 147 DKKKAAEVDLVSTSQGKKMRRKIK---AAEYLECSAKLNEGLDQV 188 (205)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~ 188 (205)
. ....++...+.+..+ ..+++++||++|+|++++
T Consensus 180 ~--------~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 F--------ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred H--------HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 0 011122333333333 345999999999999764
No 246
>PRK00049 elongation factor Tu; Reviewed
Probab=99.64 E-value=7.2e-15 Score=117.50 Aligned_cols=164 Identities=16% Similarity=0.118 Sum_probs=103.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC------CC-----cCcc---cccc-ceeEEECCEEEEEEEEEcCCCccc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPT------DY-----VPTV---FDNY-PDTITVDNKTYDVTLWDTAGQEDY 84 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~------~~-----~~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 84 (205)
.+..++|+++|..++|||||+++++...... .+ .+.. +... .....+.....++.+.|+||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 4677999999999999999999998631100 00 0000 0000 111222223456788999999888
Q ss_pred ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEE-EEeeCcccccCchhhhhhhhhccccccHHHHH
Q psy15714 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPII-LVGTKADLRSENKTIDKKKAAEVDLVSTSQGK 163 (205)
Q Consensus 85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (205)
.......+..+|++++|+|+.+...-... .++..+... ++|.+ +++||+|+....... .....+..
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~--~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~---------~~~~~~i~ 155 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELL---------ELVEMEVR 155 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHHH--HHHHHHHHc--CCCEEEEEEeecCCcchHHHH---------HHHHHHHH
Confidence 76666678899999999999875433322 444555555 78976 689999986422100 11223444
Q ss_pred HHHHHcCC----ceEEEcccCCCC----------CHHHHHHHHHHHH
Q psy15714 164 KMRRKIKA----AEYLECSAKLNE----------GLDQVFIAAVRSA 196 (205)
Q Consensus 164 ~~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~ 196 (205)
.+....+. .+++.+||.++. ++.++++.|.+.+
T Consensus 156 ~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 44444432 458999999875 5677777776643
No 247
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.64 E-value=2.3e-15 Score=120.70 Aligned_cols=153 Identities=13% Similarity=0.035 Sum_probs=92.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCC-------------CC-----------cCcc---ccccce---eEEECCEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN--KFPT-------------DY-----------VPTV---FDNYPD---TITVDNKTY 71 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~--~~~~-------------~~-----------~~t~---~~~~~~---~~~~~~~~~ 71 (205)
+||+++|+.++|||||+.+++.. .... .. +... ....+. ...+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999988632 1111 00 0000 000000 111222345
Q ss_pred EEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhh
Q psy15714 72 DVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKA 151 (205)
Q Consensus 72 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 151 (205)
++.++|+||+++|-......+..+|++++|+|+.....-+.. +.+..+... ...++++++||+|+.......-
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~--~~~~~~~~~-~~~~iivviNK~D~~~~~~~~~---- 153 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR--RHSYIASLL-GIRHVVLAVNKMDLVDYDEEVF---- 153 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH--HHHHHHHHc-CCCcEEEEEEecccccchHHHH----
Confidence 789999999998866555678899999999999865432221 122223332 1346889999999875321000
Q ss_pred hccccccHHHHHHHHHHcCC--ceEEEcccCCCCCHHH
Q psy15714 152 AEVDLVSTSQGKKMRRKIKA--AEYLECSAKLNEGLDQ 187 (205)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 187 (205)
....++...+.+..+. .+++++||.+|+|+++
T Consensus 154 ----~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 154 ----ENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ----HHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1112333344444443 3589999999999875
No 248
>COG2262 HflX GTPases [General function prediction only]
Probab=99.63 E-value=9.8e-15 Score=113.18 Aligned_cols=160 Identities=23% Similarity=0.170 Sum_probs=112.8
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCc---------cccccc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE---------DYERLR 88 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~ 88 (205)
....-..|.++|-.++|||||+|++++... ..+..+++-+.....+.+.+ ...+.+-||-|-. .|+++.
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence 345667899999999999999999997543 34445555555555666653 2356677999933 244444
Q ss_pred ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714 89 PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR 167 (205)
Q Consensus 89 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (205)
. ....+|+++.|+|++++.....+. .....+.... ...|+++|.||+|+.... . .......
T Consensus 267 E-E~~~aDlllhVVDaSdp~~~~~~~-~v~~vL~el~~~~~p~i~v~NKiD~~~~~------------~----~~~~~~~ 328 (411)
T COG2262 267 E-EVKEADLLLHVVDASDPEILEKLE-AVEDVLAEIGADEIPIILVLNKIDLLEDE------------E----ILAELER 328 (411)
T ss_pred H-HhhcCCEEEEEeecCChhHHHHHH-HHHHHHHHcCCCCCCEEEEEecccccCch------------h----hhhhhhh
Confidence 3 356899999999999996555554 5666676654 579999999999976542 1 1111111
Q ss_pred HcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 168 KIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
..+ ..+.+||++|+|++.+++.|...+...
T Consensus 329 ~~~--~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 329 GSP--NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred cCC--CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 112 379999999999999999998887643
No 249
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.63 E-value=9.3e-15 Score=120.13 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=78.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc--CCCCCC-Cc-------Ccc----------cccc-ceeEEECCEEEEEEEEEcC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE--NKFPTD-YV-------PTV----------FDNY-PDTITVDNKTYDVTLWDTA 79 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~--~~~~~~-~~-------~t~----------~~~~-~~~~~~~~~~~~~~i~D~~ 79 (205)
.+.-+|+++|.+++|||||+++++. +..... .. .+. +..+ .....++...+++.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4556999999999999999999752 222100 00 011 1111 1123344556889999999
Q ss_pred CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc
Q psy15714 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141 (205)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 141 (205)
|+..|.......++.+|++|+|+|+++... .....+....... ++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~~~~~~~--~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE--TRTRKLMEVTRLR--DTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC--HHHHHHHHHHHhc--CCCEEEEEECccccC
Confidence 998887755567889999999999987532 2222454555443 899999999999864
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.62 E-value=7.6e-15 Score=118.71 Aligned_cols=159 Identities=11% Similarity=0.058 Sum_probs=97.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc--CCCCCC------------------------CcCcc-ccccc---eeEEECCE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE--NKFPTD------------------------YVPTV-FDNYP---DTITVDNK 69 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~~------------------------~~~t~-~~~~~---~~~~~~~~ 69 (205)
.+..++|+++|+.++|||||+.+++. +..... ..+.. ....+ ....+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 35678999999999999999998875 221110 00000 00001 01112334
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcch---H---HHHHHHHHHHHhhhCCCCC-EEEEeeCcccccC
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSS---Y---ENILSKWYPELKHHCPKVP-IILVGTKADLRSE 142 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 142 (205)
...+.|+|+|||.+|.......+..+|++++|+|+.+..- + .... +.+..+... ++| ++|++||+|....
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~-eh~~~~~~~--gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTR-EHALLAFTL--GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHH-HHHHHHHHc--CCCeEEEEEEccccccc
Confidence 5678999999999998777778899999999999986531 0 1122 233344444 777 6799999995421
Q ss_pred chhhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHH
Q psy15714 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQ 187 (205)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 187 (205)
....... ....++...+....+. .+++.+||.+|+|+.+
T Consensus 161 ~~~~~~~------~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERY------DEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHH------HHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1000000 1223344444444443 5599999999999864
No 251
>PLN03126 Elongation factor Tu; Provisional
Probab=99.62 E-value=8.6e-15 Score=118.91 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=98.0
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCC------CCCCC---cCccccc---cc---eeEEECCEEEEEEEEEcCCCcc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENK------FPTDY---VPTVFDN---YP---DTITVDNKTYDVTLWDTAGQED 83 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~------~~~~~---~~t~~~~---~~---~~~~~~~~~~~~~i~D~~g~~~ 83 (205)
..+..++|+++|..++|||||+++|+... ....+ +.+.... .+ ....+......+.++|+||+.+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 45678999999999999999999998521 11110 0001000 00 0111222345789999999999
Q ss_pred cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQG 162 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (205)
|-......+..+|++++|+|+.+....... +++..+... ++| +++++||+|+.+..... ....++.
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~--e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~---------~~i~~~i 223 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELL---------ELVELEV 223 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEecccccCHHHHH---------HHHHHHH
Confidence 877666677899999999999876543332 455555555 788 77899999986532110 1122345
Q ss_pred HHHHHHcC----CceEEEcccCCCCC
Q psy15714 163 KKMRRKIK----AAEYLECSAKLNEG 184 (205)
Q Consensus 163 ~~~~~~~~----~~~~~~~Sa~~~~~ 184 (205)
..+.+..+ ..+++.+||.++++
T Consensus 224 ~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 224 RELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHhcCCCcCcceEEEEEcccccc
Confidence 55555542 34589999988753
No 252
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.62 E-value=1.5e-14 Score=111.76 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=53.6
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCC-CCCcC-----cccccccee----------------EEECC-EEEEEEEEEcCCC-
Q psy15714 26 VTTVGDGMVGKTCLLITHTENKFP-TDYVP-----TVFDNYPDT----------------ITVDN-KTYDVTLWDTAGQ- 81 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~~~~-~~~~~-----t~~~~~~~~----------------~~~~~-~~~~~~i~D~~g~- 81 (205)
|+++|.|++|||||++++++..+. .+++. +.+..+... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987653 22222 222111100 01223 3367999999997
Q ss_pred ---ccccccccc---CcCCCcEEEEEEECC
Q psy15714 82 ---EDYERLRPM---SYPNTDCFLLCFSIG 105 (205)
Q Consensus 82 ---~~~~~~~~~---~~~~~~~~i~v~d~~ 105 (205)
+.++.+... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 445544344 389999999999997
No 253
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.62 E-value=8e-15 Score=97.75 Aligned_cols=104 Identities=28% Similarity=0.343 Sum_probs=68.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcc----------cccccccCc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----------YERLRPMSY 92 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~ 92 (205)
||+|+|.+|+|||||++++++.... ....+++.......+.+++.. +.++|+||-.. +....+ .+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLE-QI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHH-HH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHH-HH
Confidence 6999999999999999999985431 222222222222344566644 56999999532 112233 34
Q ss_pred CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q psy15714 93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136 (205)
Q Consensus 93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 136 (205)
..+|++++|+|++++.. +... .++..++ .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~-~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDK-NILRELK---NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHH-HHHHHHH---TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHH-HHHHHHh---cCCCEEEEEcC
Confidence 88999999999877322 2222 4555554 48999999998
No 254
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.62 E-value=3.4e-14 Score=121.00 Aligned_cols=115 Identities=13% Similarity=0.007 Sum_probs=79.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc--CCCCC---CCcC-cc----------cccc---ceeEEECCEEEEEEEEEcCCCc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE--NKFPT---DYVP-TV----------FDNY---PDTITVDNKTYDVTLWDTAGQE 82 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~--~~~~~---~~~~-t~----------~~~~---~~~~~~~~~~~~~~i~D~~g~~ 82 (205)
+--+|+|+|.+++|||||++++.. +.... .... +. +... ...+..+ ..++.+|||||+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~~ 86 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGHV 86 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCCc
Confidence 345899999999999999999974 21100 0000 00 1111 1122233 3679999999998
Q ss_pred ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
++.......++.+|++++|+|+.+....... .++..+... ++|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 8877777789999999999999987655543 344445444 7999999999998754
No 255
>KOG0462|consensus
Probab=99.62 E-value=1.1e-14 Score=116.13 Aligned_cols=162 Identities=19% Similarity=0.141 Sum_probs=113.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC-CCCCCcCcc------------cccc----ceeEEECCEEEEEEEEEcCCCcc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENK-FPTDYVPTV------------FDNY----PDTITVDNKTYDVTLWDTAGQED 83 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~-~~~~~~~t~------------~~~~----~~~~~~~~~~~~~~i~D~~g~~~ 83 (205)
.+-=++.|+..-.-|||||..+++.-. +.+...+.. +... ......+++.+.+.++|||||-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 455578999999999999998887421 111101100 1111 01222347779999999999999
Q ss_pred cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK 163 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (205)
|..--.+.+..|+++++|+|++..-..+.+...|+. ++ .+.-+|.|+||+|++..++. ....+..
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA-fe---~~L~iIpVlNKIDlp~adpe-----------~V~~q~~ 202 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLA-FE---AGLAIIPVLNKIDLPSADPE-----------RVENQLF 202 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHH-HH---cCCeEEEeeeccCCCCCCHH-----------HHHHHHH
Confidence 998888889999999999999988777776533322 22 27899999999999987642 2223333
Q ss_pred HHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 164 KMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 164 ~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
++-..... +++.+||++|.|++++|+.|++.+..
T Consensus 203 ~lF~~~~~-~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 203 ELFDIPPA-EVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred HHhcCCcc-ceEEEEeccCccHHHHHHHHHhhCCC
Confidence 33322233 38999999999999999999988654
No 256
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.61 E-value=5e-15 Score=119.70 Aligned_cols=158 Identities=11% Similarity=0.081 Sum_probs=100.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC----------------------CcCcccc---ccce---eEEECCE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTEN--KFPTD----------------------YVPTVFD---NYPD---TITVDNK 69 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~----------------------~~~t~~~---~~~~---~~~~~~~ 69 (205)
.+..++|+++|+.++|||||+.+++.. ..... .+..... ..+. ...+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 356689999999999999999887631 11100 0000000 0010 1112334
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHH-------HHHHHHHHHHhhhCCCCC-EEEEeeCccccc
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYE-------NILSKWYPELKHHCPKVP-IILVGTKADLRS 141 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 141 (205)
...++++|+|||.+|.......+..+|++|+|+|+++. .++ ... +.+..+... ++| ++|++||+|+..
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~-eh~~~~~~~--gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTR-EHALLAFTL--GVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHH-HHHHHHHHc--CCCcEEEEEEcccCCc
Confidence 56789999999999998888889999999999999873 221 222 233333333 675 788999999862
Q ss_pred CchhhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHH
Q psy15714 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQ 187 (205)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 187 (205)
....... .....++.+.+.+..+. .+++++||.+|+|+.+
T Consensus 160 ~~~~~~~------~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKAR------YDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHH------HHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 2110000 01234567777777663 4599999999999853
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.61 E-value=7.7e-15 Score=118.45 Aligned_cols=166 Identities=16% Similarity=0.121 Sum_probs=102.5
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCC---CCCCc--Cc--cccccce-----------eE-EEC------------
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKF---PTDYV--PT--VFDNYPD-----------TI-TVD------------ 67 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~---~~~~~--~t--~~~~~~~-----------~~-~~~------------ 67 (205)
.....++|.++|+-..|||||+.+|++-.. .+... -| .+..... .+ ...
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 446778999999999999999999996322 11000 00 0000000 00 000
Q ss_pred C----EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc-chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 68 N----KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST-SSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 68 ~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
+ ....+.+.|+||++.|-......+..+|++++|+|+.+. ...+.. +.+..+... .-.|+++|+||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~--ehl~i~~~l-gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS--EHLAAVEIM-KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH--HHHHHHHHc-CCCcEEEEEecccccCH
Confidence 0 023688999999999877666678899999999999874 222221 223333333 12468999999998753
Q ss_pred chhhhhhhhhccccccHHHHHHHHHH--cCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 143 NKTIDKKKAAEVDLVSTSQGKKMRRK--IKAAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
... ....++.+.+.+. ....+++++||++|+|+++|++.|.+.+.
T Consensus 187 ~~~----------~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQA----------QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHH----------HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 211 1112233333322 13345999999999999999999986544
No 258
>PLN03127 Elongation factor Tu; Provisional
Probab=99.61 E-value=3.1e-14 Score=115.05 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=101.2
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcC------CCCCCC---c--Ccc---cccc-ceeEEECCEEEEEEEEEcCCCc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTEN------KFPTDY---V--PTV---FDNY-PDTITVDNKTYDVTLWDTAGQE 82 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~------~~~~~~---~--~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~ 82 (205)
...+..++|+++|..++|||||++++.+. .....+ + +.. +... .....+.....++.+.|+||+.
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 34567899999999999999999998632 100000 0 000 0111 1122233334578899999998
Q ss_pred ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQ 161 (205)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (205)
+|-......+..+|++++|+|+.+...-+.. +.+..+... ++| +++++||+|+.+..... ....++
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt~--e~l~~~~~~--gip~iIvviNKiDlv~~~~~~---------~~i~~~ 202 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVVFLNKVDVVDDEELL---------ELVEME 202 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEeeccCCHHHHH---------HHHHHH
Confidence 8766555566789999999999875433321 444555555 789 57899999987532110 111223
Q ss_pred HHHHHHHcC----CceEEEcccC---CCCC-------HHHHHHHHHHHH
Q psy15714 162 GKKMRRKIK----AAEYLECSAK---LNEG-------LDQVFIAAVRSA 196 (205)
Q Consensus 162 ~~~~~~~~~----~~~~~~~Sa~---~~~~-------i~~~~~~i~~~~ 196 (205)
...+....+ ..+++.+||. ++.| +.++++.+.+.+
T Consensus 203 i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 203 LRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 344444332 2458888876 4444 677887777654
No 259
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.59 E-value=1.7e-14 Score=121.85 Aligned_cols=158 Identities=15% Similarity=0.060 Sum_probs=94.7
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCC--CCCC----------CcCcc-------------c----cccce---eEEE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENK--FPTD----------YVPTV-------------F----DNYPD---TITV 66 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~----------~~~t~-------------~----~~~~~---~~~~ 66 (205)
.....++|+++|.+++|||||+++++... .... ...++ . ...+. ...+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 44566899999999999999999988532 1110 00000 0 00000 0112
Q ss_pred CCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhh
Q psy15714 67 DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTI 146 (205)
Q Consensus 67 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 146 (205)
.....++.++|+||++.|.......+..+|++++|+|+.....-+.. +....+... ...|++|++||+|+.......
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchhHH
Confidence 22234688999999988765555568899999999999765432221 222223322 135788999999986422100
Q ss_pred hhhhhhccccccHHHHHHHHHHcCC--ceEEEcccCCCCCHHH
Q psy15714 147 DKKKAAEVDLVSTSQGKKMRRKIKA--AEYLECSAKLNEGLDQ 187 (205)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 187 (205)
. .....+...+.+..+. .+++++||++|+|+++
T Consensus 177 ~--------~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 F--------DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred H--------HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 0 0112334444445443 3489999999999874
No 260
>KOG1145|consensus
Probab=99.57 E-value=4.7e-14 Score=112.52 Aligned_cols=164 Identities=21% Similarity=0.202 Sum_probs=109.9
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEE-CCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITV-DNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
-..++.=|-|+|...-|||||+.+|...........-+.... -..+.. +| -.+++.|||||..|..++.+...-.|
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtD 226 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTD 226 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCcccc
Confidence 344667789999999999999999998776432222111111 123333 44 46888899999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc-CCceEE
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI-KAAEYL 175 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 175 (205)
++|+|+.++|.-.-+.+ +-+.-.+. .++|++|++||+|.+...+..-...... ++.. ...+ |-.+++
T Consensus 227 IvVLVVAadDGVmpQT~--EaIkhAk~--A~VpiVvAinKiDkp~a~pekv~~eL~~-------~gi~-~E~~GGdVQvi 294 (683)
T KOG1145|consen 227 IVVLVVAADDGVMPQTL--EAIKHAKS--ANVPIVVAINKIDKPGANPEKVKRELLS-------QGIV-VEDLGGDVQVI 294 (683)
T ss_pred EEEEEEEccCCccHhHH--HHHHHHHh--cCCCEEEEEeccCCCCCCHHHHHHHHHH-------cCcc-HHHcCCceeEE
Confidence 99999999987544333 22222333 3999999999999876543211110000 0011 1222 335589
Q ss_pred EcccCCCCCHHHHHHHHHHHH
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
++||++|+|++.|-+.+.-.+
T Consensus 295 piSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 295 PISALTGENLDLLEEAILLLA 315 (683)
T ss_pred EeecccCCChHHHHHHHHHHH
Confidence 999999999999998876654
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.57 E-value=3e-13 Score=98.39 Aligned_cols=163 Identities=17% Similarity=0.143 Sum_probs=99.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CccccccceeEEECCEEEEEEEEEcCCCccccc--------c---cc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYV---PTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER--------L---RP 89 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~ 89 (205)
++|+++|.+|+|||||+|++++.+...... +.+..........++ ..+.++||||-..... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999876432211 122222222334455 4688899999543211 1 11
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCC---CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP---KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR 166 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (205)
...++.+++++|.++.+ .+-.+ ...+..+.+... -.+++++.|+.|........... .-.....+.+.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~------~~~~~~l~~l~ 149 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYL------ENSCEALKRLL 149 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHH------HhccHHHHHHH
Confidence 23477899999999876 33222 244555544431 36889999999976543211110 01124556666
Q ss_pred HHcCCceEEEcc-----cCCCCCHHHHHHHHHHHHHh
Q psy15714 167 RKIKAAEYLECS-----AKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 167 ~~~~~~~~~~~S-----a~~~~~i~~~~~~i~~~~~~ 198 (205)
+..+.. ++..+ +..+.+++++++.|-+.+..
T Consensus 150 ~~c~~r-~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 150 EKCGGR-YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHhCCe-EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 666655 44443 45677899999888887765
No 262
>KOG1532|consensus
Probab=99.55 E-value=4.7e-14 Score=103.86 Aligned_cols=180 Identities=18% Similarity=0.241 Sum_probs=101.2
Q ss_pred ccccceeeEEEEECCCCCCHHHHHHHHhcCCC---CCCCcCcccc-----ccceeEEE-----------------C----
Q psy15714 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKF---PTDYVPTVFD-----NYPDTITV-----------------D---- 67 (205)
Q Consensus 17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~-----~~~~~~~~-----------------~---- 67 (205)
+.-..++..|+|+|..|+|||||+++|..+-. .++|.-.... .+.-.+.+ +
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 34456778999999999999999998885432 2222111100 00001110 0
Q ss_pred --------------------CEEEEEEEEEcCCCcccc------cccccCcC--CCcEEEEEEECCC---cchHHHHHHH
Q psy15714 68 --------------------NKTYDVTLWDTAGQEDYE------RLRPMSYP--NTDCFLLCFSIGS---TSSYENILSK 116 (205)
Q Consensus 68 --------------------~~~~~~~i~D~~g~~~~~------~~~~~~~~--~~~~~i~v~d~~~---~~s~~~~~~~ 116 (205)
...++..|+|||||.+.- .+....+. ..-++++|+|... +.+|-.-.-+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 234678899999986521 11111122 2345666666432 2233221113
Q ss_pred HHHHHhhhCCCCCEEEEeeCcccccCchhhhh---hhh----------hccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714 117 WYPELKHHCPKVPIILVGTKADLRSENKTIDK---KKA----------AEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183 (205)
Q Consensus 117 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 183 (205)
-..++.+. .+|++++.||+|+.+.....+= .+. .....+.......+-..+.....+.+|+.+|+
T Consensus 173 AcSilykt--klp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 173 ACSILYKT--KLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHHHhc--cCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 33444444 8999999999999887654320 000 00111222223333344444448899999999
Q ss_pred CHHHHHHHHHHHHHh
Q psy15714 184 GLDQVFIAAVRSAVK 198 (205)
Q Consensus 184 ~i~~~~~~i~~~~~~ 198 (205)
|++++|..+-+.+-+
T Consensus 251 G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 251 GFDDFFTAVDESVDE 265 (366)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999998877654
No 263
>PRK13768 GTPase; Provisional
Probab=99.54 E-value=3.8e-14 Score=106.80 Aligned_cols=125 Identities=20% Similarity=0.116 Sum_probs=74.5
Q ss_pred EEEEEEcCCCccc---ccccccC---cCC--CcEEEEEEECCCcchHHHHHH-HHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 72 DVTLWDTAGQEDY---ERLRPMS---YPN--TDCFLLCFSIGSTSSYENILS-KWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 72 ~~~i~D~~g~~~~---~~~~~~~---~~~--~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
.+.+||+||+.+. +..+..+ +.. .+++++++|+....+..+... .|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 6899999997663 2222222 222 899999999976554433322 333333322348999999999999876
Q ss_pred chhhhhhhhhcccccc-----------HHHHH---HHHHHcC-CceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 143 NKTIDKKKAAEVDLVS-----------TSQGK---KMRRKIK-AAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 143 ~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
...............- ....+ +..+..+ ..+++++|+++++|+++++++|.+.+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 5432222211100000 01111 1222333 23489999999999999999998765
No 264
>PRK09866 hypothetical protein; Provisional
Probab=99.54 E-value=3.2e-13 Score=110.76 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=74.0
Q ss_pred EEEEEEEcCCCccc--c---cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchh
Q psy15714 71 YDVTLWDTAGQEDY--E---RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKT 145 (205)
Q Consensus 71 ~~~~i~D~~g~~~~--~---~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 145 (205)
.++.+.||||-... + ......+..+|+++||+|+....+..+. .++..+.+...+.|+++|+||+|+.+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dre-- 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRN-- 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCcc--
Confidence 35778899996432 1 1223468899999999999876554442 4556665553346999999999986432
Q ss_pred hhhhhhhccccccHHHHHHHHH------HcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714 146 IDKKKAAEVDLVSTSQGKKMRR------KIKAAEYLECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 194 (205)
....+....+.. ......++++||.+|.|++++++.|.+
T Consensus 306 ----------eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 306 ----------SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ----------cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 112333333322 112344899999999999999999877
No 265
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.54 E-value=2.4e-14 Score=93.05 Aligned_cols=137 Identities=22% Similarity=0.175 Sum_probs=98.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCC----cccccccccCcCCCcEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ----EDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~~~~i~ 100 (205)
|++++|..|+|||||.+++.+...-. ..|.. +.++.. -.+|+||. ..+..-.......+|++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQA------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQA------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--cccce------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 79999999999999999988776422 22222 222221 13499994 2222223345778999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|-.++++++--.- .+.+.. ..|+|-|++|.|+.++ ...+..+.|..+-|..++|++|+.
T Consensus 71 v~~and~~s~f~p--~f~~~~-----~k~vIgvVTK~DLaed--------------~dI~~~~~~L~eaGa~~IF~~s~~ 129 (148)
T COG4917 71 VHAANDPESRFPP--GFLDIG-----VKKVIGVVTKADLAED--------------ADISLVKRWLREAGAEPIFETSAV 129 (148)
T ss_pred eecccCccccCCc--cccccc-----ccceEEEEecccccch--------------HhHHHHHHHHHHcCCcceEEEecc
Confidence 9999998763221 232222 5679999999999863 335667888888999999999999
Q ss_pred CCCCHHHHHHHHHH
Q psy15714 181 LNEGLDQVFIAAVR 194 (205)
Q Consensus 181 ~~~~i~~~~~~i~~ 194 (205)
++.|++++++.+..
T Consensus 130 d~~gv~~l~~~L~~ 143 (148)
T COG4917 130 DNQGVEELVDYLAS 143 (148)
T ss_pred CcccHHHHHHHHHh
Confidence 99999999988764
No 266
>PRK12739 elongation factor G; Reviewed
Probab=99.53 E-value=3.5e-13 Score=114.81 Aligned_cols=116 Identities=16% Similarity=0.054 Sum_probs=79.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCC------CC-----CcC---cccccc---ceeEEECCEEEEEEEEEcCCC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN--KFP------TD-----YVP---TVFDNY---PDTITVDNKTYDVTLWDTAGQ 81 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~------~~-----~~~---t~~~~~---~~~~~~~~~~~~~~i~D~~g~ 81 (205)
.+-.+|+|+|.+++|||||++++... ... .. +.+ ..+... ...+..++ .++.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 34568999999999999999999742 110 00 000 001111 11222333 67899999999
Q ss_pred cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
..+.......+..+|++++|+|+.+....... .++..+... ++|+++++||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 88777777788999999999999877544433 344445544 7999999999998754
No 267
>KOG1191|consensus
Probab=99.52 E-value=9e-14 Score=109.75 Aligned_cols=166 Identities=23% Similarity=0.202 Sum_probs=108.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCccc-----ccc----c
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY-----ERL----R 88 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~----~ 88 (205)
....+.|+++|.|++|||||+|+|..... ..+...|+.+.....+.++| +++.+.||+|-.+- +.+ .
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence 34558999999999999999999998764 35556666777777788888 66778899995441 111 1
Q ss_pred ccCcCCCcEEEEEEECCCc--chHHHHHHHHHHHHhhhC-------CCCCEEEEeeCcccccCchhhhhhhhhccccccH
Q psy15714 89 PMSYPNTDCFLLCFSIGST--SSYENILSKWYPELKHHC-------PKVPIILVGTKADLRSENKTIDKKKAAEVDLVST 159 (205)
Q Consensus 89 ~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (205)
+..+..+|++++|+|+... ++-..+. ..+.....-. ...|++++.||+|+...-.. .+.
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~-~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~-----------~~~ 410 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIA-RILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE-----------MTK 410 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHH-HHHHHhccceEEEeccccccceEEEechhhccCcccc-----------ccC
Confidence 2357889999999999433 3322222 2222222211 24799999999999875221 111
Q ss_pred HHHHHHH-HHc-CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 160 SQGKKMR-RKI-KAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 160 ~~~~~~~-~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
.-..... ... ....+.++|+++++|++.+...+.+.+...
T Consensus 411 ~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 411 IPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred CceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 0000000 111 223357799999999999999888876553
No 268
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.7e-13 Score=104.25 Aligned_cols=156 Identities=15% Similarity=0.088 Sum_probs=103.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCC---------CCCc---Cccccccc---------------eeEE-----EC
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFP---------TDYV---PTVFDNYP---------------DTIT-----VD 67 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~---------~~~~---~t~~~~~~---------------~~~~-----~~ 67 (205)
.+..+|++-+|...-||||||.||+.+.-. .... .+.+.... .++. +.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 456799999999999999999998864211 0000 11111110 1111 11
Q ss_pred CEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh
Q psy15714 68 NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID 147 (205)
Q Consensus 68 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 147 (205)
-.+-+|.|-|+|||+.|......-...+|++|+++|+- ..+.+.. .-...+.....=..++++.||+||.+......
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QT-rRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQT-RRHSFIASLLGIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHh-HHHHHHHHHhCCcEEEEEEeeecccccCHHHH
Confidence 23457899999999999998888899999999999984 3333322 22233333333466899999999987653211
Q ss_pred hhhhhccccccHHHHHHHHHHcCCc--eEEEcccCCCCCHH
Q psy15714 148 KKKAAEVDLVSTSQGKKMRRKIKAA--EYLECSAKLNEGLD 186 (205)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~ 186 (205)
.....+-..++.+++.. .++++||..|+|+-
T Consensus 160 --------~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 --------EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred --------HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 22345667788888764 48999999999874
No 269
>PRK00007 elongation factor G; Reviewed
Probab=99.52 E-value=4.9e-13 Score=113.93 Aligned_cols=117 Identities=15% Similarity=0.036 Sum_probs=78.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc--CCCCCC-----------CcC---cccccc---ceeEEECCEEEEEEEEEcCCC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE--NKFPTD-----------YVP---TVFDNY---PDTITVDNKTYDVTLWDTAGQ 81 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~--~~~~~~-----------~~~---t~~~~~---~~~~~~~~~~~~~~i~D~~g~ 81 (205)
.+--+|+|+|.+++|||||++++.. +..... +.+ ..+... ...+...+ .++.+.||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence 3456999999999999999999973 221100 000 001111 11222333 57888999999
Q ss_pred cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
..|.......+..+|++|+|+|+......+.. ..+..+... ++|.++++||+|+....
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCCCC
Confidence 87766555678889999999998877555443 344455555 79999999999987543
No 270
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.51 E-value=6.2e-13 Score=103.35 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=88.6
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc----------chHHHHHHHHHHHHhhhC-CCCCEEEEeeCcc
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST----------SSYENILSKWYPELKHHC-PKVPIILVGTKAD 138 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 138 (205)
.+.+.+||++|+...+..|..++.++++++||+|.++. ..+.+....|-..+.... .++|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46788999999999999999999999999999999874 345555544555554433 6899999999999
Q ss_pred cccCchhhh-hhhh---hccccccHHHHHHHHHHc---------CCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 139 LRSENKTID-KKKA---AEVDLVSTSQGKKMRRKI---------KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 139 l~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
+........ .... ......+.+++..+.... .......++|.+..++..+|+.+.+.++...
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 754321111 1111 111012333433332221 1233567899999999999999999988764
No 271
>KOG1486|consensus
Probab=99.51 E-value=1.4e-12 Score=95.11 Aligned_cols=164 Identities=17% Similarity=0.170 Sum_probs=118.6
Q ss_pred CccccccccceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccc----
Q psy15714 12 DKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER---- 86 (205)
Q Consensus 12 ~~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---- 86 (205)
.++.-........||+++|.|.+|||||+..+..... ...|..|+-+..+..+.+++.+ +++.|+||-..--+
T Consensus 51 kg~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkG 128 (364)
T KOG1486|consen 51 KGEGFEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKG 128 (364)
T ss_pred CCCCeeeeccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCC
Confidence 4555555666778999999999999999988886543 3567777777877788888855 77779999432211
Q ss_pred ---ccccCcCCCcEEEEEEECCCcchHHHHHH------------------------------------------------
Q psy15714 87 ---LRPMSYPNTDCFLLCFSIGSTSSYENILS------------------------------------------------ 115 (205)
Q Consensus 87 ---~~~~~~~~~~~~i~v~d~~~~~s~~~~~~------------------------------------------------ 115 (205)
......+.+|+++.|.|++..+.-..+.+
T Consensus 129 RGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILh 208 (364)
T KOG1486|consen 129 RGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILH 208 (364)
T ss_pred CCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHH
Confidence 12245788999999999986543332222
Q ss_pred ------------------HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 116 ------------------KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 116 ------------------~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
.+++.+......++++.|.||+| +++.++...+++..+ -+-+
T Consensus 209 eykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----------------~vs~eevdrlAr~Pn---svVi 268 (364)
T KOG1486|consen 209 EYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----------------QVSIEEVDRLARQPN---SVVI 268 (364)
T ss_pred HHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccc-----------------eecHHHHHHHhcCCC---cEEE
Confidence 34444443334567788888888 788889998987755 3568
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy15714 178 SAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~ 197 (205)
|+....|++.+++.+...+.
T Consensus 269 SC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 269 SCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EeccccCHHHHHHHHHHHhc
Confidence 88899999999999988764
No 272
>KOG1144|consensus
Probab=99.50 E-value=1.4e-13 Score=113.05 Aligned_cols=177 Identities=19% Similarity=0.143 Sum_probs=111.1
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCC----CcCccccccceeE---------EECC----EEEEEEEEEcCC
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTD----YVPTVFDNYPDTI---------TVDN----KTYDVTLWDTAG 80 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~----~~~t~~~~~~~~~---------~~~~----~~~~~~i~D~~g 80 (205)
....+..-+||+|...+|||-|+..+.+..+... ....++..|.... .-++ ...-+.++|+||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 3456778899999999999999988887443221 1222233321110 0011 122478889999
Q ss_pred CcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh---hhhh-hcccc
Q psy15714 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID---KKKA-AEVDL 156 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~-~~~~~ 156 (205)
|+.|..++.+....||++|+|+|+...-.-+.+ +-+..++.. +.|+||++||+|..+.-.... .... ..+..
T Consensus 550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqti--ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTI--ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred chhhhhhhhccccccceEEEEeehhccCCcchh--HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 999999999999999999999999865333332 334455555 899999999999865422111 0000 00000
Q ss_pred ccHHH--------HHHHHHH-------------cCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 157 VSTSQ--------GKKMRRK-------------IKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 157 ~~~~~--------~~~~~~~-------------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
...++ ..+|+.+ -....++++||.+|+||.+|+.+|++....
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 01111 1112211 022346889999999999999999887544
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.50 E-value=6.5e-13 Score=115.58 Aligned_cols=156 Identities=20% Similarity=0.220 Sum_probs=92.4
Q ss_pred CCHHHHHHHHhcCCCCCC----CcCccccccceeEEECC----------------EEEEEEEEEcCCCcccccccccCcC
Q psy15714 34 VGKTCLLITHTENKFPTD----YVPTVFDNYPDTITVDN----------------KTYDVTLWDTAGQEDYERLRPMSYP 93 (205)
Q Consensus 34 ~GKstli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~ 93 (205)
++||||+.++.+...... .+..++..+ +..+. ....+.+|||||++.|..+....+.
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~---v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~ 548 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATE---IPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGS 548 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEE---EEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcc
Confidence 459999999997765432 222223222 11110 0123899999999999888777888
Q ss_pred CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh----hhhhhccccccHHHH-------
Q psy15714 94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID----KKKAAEVDLVSTSQG------- 162 (205)
Q Consensus 94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~------- 162 (205)
.+|++++|+|+++.-+-... ..+..+... ++|+++|+||+|+........ ........+...++.
T Consensus 549 ~aDivlLVVDa~~Gi~~qT~--e~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 549 LADLAVLVVDINEGFKPQTI--EAINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred cCCEEEEEEECcccCCHhHH--HHHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999874222221 233344444 789999999999964211000 000000000000000
Q ss_pred --------------HHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 163 --------------KKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 163 --------------~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
.......+..+++++||++|+||++++..+....
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0001112445699999999999999998876543
No 274
>PRK12740 elongation factor G; Reviewed
Probab=99.49 E-value=2.3e-13 Score=115.84 Aligned_cols=111 Identities=18% Similarity=0.109 Sum_probs=72.8
Q ss_pred ECCCCCCHHHHHHHHhcCC--CCC--CC-cC-cc----------cccc-ceeEEECCEEEEEEEEEcCCCcccccccccC
Q psy15714 29 VGDGMVGKTCLLITHTENK--FPT--DY-VP-TV----------FDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMS 91 (205)
Q Consensus 29 ~G~~~~GKstli~~~~~~~--~~~--~~-~~-t~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 91 (205)
+|++++|||||++++.... ... .. .. +. +... .....+....+.+.+||+||+..+.......
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 6999999999999985321 110 00 00 00 0000 0011122234779999999998877766778
Q ss_pred cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
+..+|++++|+|+++....... .++..+... ++|+++|+||+|+....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~--~~~~~~~~~--~~p~iiv~NK~D~~~~~ 128 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE--TVWRQAEKY--GVPRIIFVNKMDRAGAD 128 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCCC
Confidence 8999999999999887665543 233344443 79999999999987543
No 275
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=1.7e-13 Score=107.84 Aligned_cols=159 Identities=20% Similarity=0.178 Sum_probs=107.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCC-----CcCc--c----cccc-----ceeEE-ECCEEEEEEEEEcCCCccc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK--FPTD-----YVPT--V----FDNY-----PDTIT-VDNKTYDVTLWDTAGQEDY 84 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~--~~~~-----~~~t--~----~~~~-----~~~~~-~~~~~~~~~i~D~~g~~~~ 84 (205)
-++.++.+-.-|||||..|+.... +... ..-+ + +... .-.+. -+|..+.++++|||||-.|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 357888899999999998887532 1110 0000 0 1111 01112 2568899999999999988
Q ss_pred ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK 164 (205)
Q Consensus 85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (205)
.---.+-+..|.++++|+|++..-..+.+.+ .+..+. .+.-++.|+||+||+..++ ....++.+.
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN-~YlAle---~~LeIiPViNKIDLP~Adp-----------ervk~eIe~ 154 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALE---NNLEIIPVLNKIDLPAADP-----------ERVKQEIED 154 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHH-HHHHHH---cCcEEEEeeecccCCCCCH-----------HHHHHHHHH
Confidence 7666667889999999999998876666653 323232 3788999999999987653 122222222
Q ss_pred HHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 165 MRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 165 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
.. ..+....+.+||++|.||+++++.|++.+-.
T Consensus 155 ~i-Gid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 155 II-GIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred Hh-CCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 21 2233337899999999999999999988654
No 276
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.49 E-value=3.9e-13 Score=90.40 Aligned_cols=113 Identities=28% Similarity=0.360 Sum_probs=81.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCc-CccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYV-PTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
+|++++|..|+|||+|+.++..+.+...+. ++.+ +........+..+.++++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 489999999999999999998888765443 4333 3333345678889999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
+.++..+++.+ |...+.... .++|.++++||.|+.... .+..++... ++++|+++
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~------------~~~~~~~~~---------~~~~s~~~ 110 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEER------------QVATEEGLE---------FAETSAKT 110 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhC------------cCCHHHHHH---------HHHHhCCC
Confidence 99999988664 766665443 578899999999985422 222222222 56789999
Q ss_pred CCCHH
Q psy15714 182 NEGLD 186 (205)
Q Consensus 182 ~~~i~ 186 (205)
+.|+.
T Consensus 111 ~~~~~ 115 (124)
T smart00010 111 PEEGE 115 (124)
T ss_pred cchhh
Confidence 99874
No 277
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.48 E-value=2.2e-14 Score=106.87 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=62.2
Q ss_pred EEEEEEcCCCcccccccccC------c--CCCcEEEEEEECCCcchHHHHHHHHHHHHhh-hCCCCCEEEEeeCcccccC
Q psy15714 72 DVTLWDTAGQEDYERLRPMS------Y--PNTDCFLLCFSIGSTSSYENILSKWYPELKH-HCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 72 ~~~i~D~~g~~~~~~~~~~~------~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~ 142 (205)
.+.|+|||||.++-..+... + ...-++|+++|+.-..+.......++..+.. ...+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 68999999998754433322 1 4456788889876444433332233222221 1138999999999999874
Q ss_pred chhhhhhhhhccccc-------cHHHHHHHHH---HcCCc-eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 143 NKTIDKKKAAEVDLV-------STSQGKKMRR---KIKAA-EYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 143 ~~~~~~~~~~~~~~~-------~~~~~~~~~~---~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
............... .....++++. ..+.. .++.+|+++++|+++++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 421111111110000 1111222222 23444 699999999999999999887654
No 278
>KOG1707|consensus
Probab=99.48 E-value=2e-12 Score=104.04 Aligned_cols=166 Identities=20% Similarity=0.263 Sum_probs=124.2
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 94 (205)
+.....+.+.+.|+|+.++|||.|++.+.++.+......+....+ ...+...+....+.+-|.+-. ....+...- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 345667889999999999999999999999998876666665555 345566688888888898765 333332222 78
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY 174 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (205)
+|++.++||.+++.+|.... .....-... ..+|+++|++|+|+.... +...-+-.+++.++++.+.
T Consensus 496 cDv~~~~YDsS~p~sf~~~a-~v~~~~~~~-~~~Pc~~va~K~dlDe~~------------Q~~~iqpde~~~~~~i~~P 561 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLA-EVYNKYFDL-YKIPCLMVATKADLDEVP------------QRYSIQPDEFCRQLGLPPP 561 (625)
T ss_pred eeeEEEecccCCchHHHHHH-HHHHHhhhc-cCCceEEEeeccccchhh------------hccCCChHHHHHhcCCCCC
Confidence 99999999999999998876 333333222 699999999999998754 2222222788999999888
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 175 LECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
...|.+..-. .++|..|.-++..
T Consensus 562 ~~~S~~~~~s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 562 IHISSKTLSS-NELFIKLATMAQY 584 (625)
T ss_pred eeeccCCCCC-chHHHHHHHhhhC
Confidence 8888885333 8999998877654
No 279
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.47 E-value=1.3e-12 Score=104.06 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=54.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCcc-----ccccc-ee---------E------EECC-EEEEEEEEEcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTV-----FDNYP-DT---------I------TVDN-KTYDVTLWDTAG 80 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~-----~~~~~-~~---------~------~~~~-~~~~~~i~D~~g 80 (205)
++|+++|.|++|||||++++++..+.. .+..++ +.... .. . ..++ ....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876642 333222 22110 00 0 0111 236799999999
Q ss_pred C----cccccccccC---cCCCcEEEEEEECC
Q psy15714 81 Q----EDYERLRPMS---YPNTDCFLLCFSIG 105 (205)
Q Consensus 81 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 105 (205)
- ...+.+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3333333344 88999999999986
No 280
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.47 E-value=4e-13 Score=100.72 Aligned_cols=96 Identities=21% Similarity=0.176 Sum_probs=77.0
Q ss_pred cccccccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHH
Q psy15714 82 EDYERLRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS 160 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (205)
+++..+.+.++.++|.+++|||+.++. ++..+. .|+..+.. .++|+++|+||+||.... .+..+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~-r~l~~~~~--~~i~~vIV~NK~DL~~~~------------~~~~~ 88 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD-RFLVVAEA--QNIEPIIVLNKIDLLDDE------------DMEKE 88 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEECcccCCCH------------HHHHH
Confidence 567788888999999999999999887 788876 88877765 489999999999997543 33334
Q ss_pred HHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714 161 QGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 161 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 194 (205)
+...+. ..+.. ++++||++|+|++++|+.+..
T Consensus 89 ~~~~~~-~~g~~-v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 89 QLDIYR-NIGYQ-VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHHHH-HCCCe-EEEEecCCchhHHHHHhhhcC
Confidence 455554 46665 999999999999999988753
No 281
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.44 E-value=1.9e-12 Score=101.49 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=87.5
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc----------chHHHHHHHHHHHHhhhC-CCCCEEEEeeCcc
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST----------SSYENILSKWYPELKHHC-PKVPIILVGTKAD 138 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 138 (205)
.+.+.+||.+|+...+..|..++.++++++||+|+++. ..+.+....|...+.... .++|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 35678999999999999999999999999999999973 345565545555554332 6899999999999
Q ss_pred cccCchhhhhh-h---hhccccccHHHHHHHHHH-----c-----CCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 139 LRSENKTIDKK-K---AAEVDLVSTSQGKKMRRK-----I-----KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 139 l~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
+....-..... . .... ..+.+.+..+... . .....+.++|.+-.++..+|+.+...++.+.
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g-~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKG-PNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred hHHHHhCCCchhccCCCCCC-CCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 85332111100 0 0111 1233333332221 1 1233577899999999999999988887654
No 282
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=8.2e-13 Score=102.62 Aligned_cols=159 Identities=15% Similarity=0.129 Sum_probs=98.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc--CCCCC----------------------CCcCcccccc-cee-----EEECCE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE--NKFPT----------------------DYVPTVFDNY-PDT-----ITVDNK 69 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~----------------------~~~~t~~~~~-~~~-----~~~~~~ 69 (205)
.+..++++++|+.++|||||+.+|+. +.+.. -.+.+...+. -.+ ..+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 45678999999999999999988773 22211 0111111111 011 122334
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc---h--HHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS---S--YENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 144 (205)
.+.++|.|+|||..|-......+.++|+.|+|+|+.+.+ . ......+. ..+.+...-..++|++||+|+.+-+.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcCCceEEEEEEcccccccCH
Confidence 567999999999999888888899999999999998763 1 11111111 11222222456789999999986321
Q ss_pred hhhhhhhhccccccHHHHHHHHHHcCCc----eEEEcccCCCCCHHH
Q psy15714 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAA----EYLECSAKLNEGLDQ 187 (205)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~~~~~i~~ 187 (205)
+. . .-...+...+.+..+.. +++++|+..|+|+.+
T Consensus 163 --~r--f----~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 --ER--F----EEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred --HH--H----HHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 10 0 11223334466666543 499999999999753
No 283
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.44 E-value=1.1e-12 Score=95.37 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=62.7
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCE--EEEeeCcccccCchhhhh
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI--ILVGTKADLRSENKTIDK 148 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--ivv~nK~Dl~~~~~~~~~ 148 (205)
....+.++.|..-.....+ .-++.+|.|+|+.+..+... .+.. ++.. ++++||+|+.+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~~-------qi~~ad~~~~~k~d~~~~~----- 153 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGGP-------GITRSDLLVINKIDLAPMV----- 153 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhHh-------HhhhccEEEEEhhhccccc-----
Confidence 4566677777321111111 12678999999987655322 1111 3334 8999999998531
Q ss_pred hhhhccccccHHHHHHHHHH-cCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 149 KKAAEVDLVSTSQGKKMRRK-IKAAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
....+...+..+. ....+++++||++|+|++++|+++.+...
T Consensus 154 -------~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 154 -------GADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred -------cccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 1112223333333 33455999999999999999999987654
No 284
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.43 E-value=8.8e-13 Score=112.73 Aligned_cols=118 Identities=15% Similarity=0.059 Sum_probs=80.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC--CC---------CCCc-------Ccccccc-ceeEEECCEEEEEEEEEcCCC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENK--FP---------TDYV-------PTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~--~~---------~~~~-------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~ 81 (205)
...-+|+++|+.++|||||+++|.... .. -.+. .|+.... .....+++..+++.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 345699999999999999999987421 00 0111 1111111 112235566789999999999
Q ss_pred cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
.+|.......+..+|++++|+|+.+....+... .| ..+... ++|.++++||+|....
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~-~~-~~~~~~--~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET-VL-RQALKE--NVKPVLFINKVDRLIN 153 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHH-HH-HHHHHc--CCCEEEEEEChhcccc
Confidence 998777777899999999999998754333321 23 223233 7899999999998643
No 285
>KOG1490|consensus
Probab=99.42 E-value=6.2e-13 Score=105.27 Aligned_cols=161 Identities=16% Similarity=0.067 Sum_probs=111.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCccc----cccc-----ccCc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY----ERLR-----PMSY 92 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~-----~~~~ 92 (205)
.-.++|+|-|++|||||++....... .++|..|+..-+.....+. -..+++.||||--.. +... ....
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk--YlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK--YLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh--eeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 34789999999999999998887655 4566666654443333222 256888899994221 1111 1223
Q ss_pred CCCcEEEEEEECCCc--chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHH--HHHHHHHH
Q psy15714 93 PNTDCFLLCFSIGST--SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS--QGKKMRRK 168 (205)
Q Consensus 93 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 168 (205)
+--.+|+|+.|++.. .|+.... .+...++..+.|.|+|+|+||+|+.... .++.+ +..+....
T Consensus 246 HLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~e------------dL~~~~~~ll~~~~~ 312 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRPE------------DLDQKNQELLQTIID 312 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccCcc------------ccCHHHHHHHHHHHh
Confidence 445778999999865 4666655 6778888888899999999999998765 33322 33334444
Q ss_pred cCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 169 IKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
.+..+++++|+.+.+|+-++.......++.
T Consensus 313 ~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 313 DGNVKVVQTSCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred ccCceEEEecccchhceeeHHHHHHHHHHH
Confidence 555559999999999998888777776655
No 286
>KOG3905|consensus
Probab=99.39 E-value=1.1e-11 Score=93.50 Aligned_cols=170 Identities=20% Similarity=0.189 Sum_probs=114.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc---eeEEECCEEEEEEEEEcCCCcccccccccCcCC----C
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP---DTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN----T 95 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~ 95 (205)
--.|+|+|..++|||||+.++.+.+-. .+-.+-.|. ..-...+...++.+|=+-|.--+..+....+.. -
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~~---KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSETV---KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccccc---CCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 347999999999999999999876621 222222221 111223445678899998887666665554444 3
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhCC-------------------------------------------------
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYPELKHHCP------------------------------------------------- 126 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~------------------------------------------------- 126 (205)
-++|++.|+++++.+-+..+.|...+.++..
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 5688899999997766655577666642220
Q ss_pred -------------CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHH
Q psy15714 127 -------------KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAV 193 (205)
Q Consensus 127 -------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 193 (205)
.+|++||.+|+|...--.... ......-.....+.+.|+-++|.. ++.+|++..-|++-++.+|+
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~-eyrDehfdfiq~~lRkFCLr~Gaa-LiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEH-EYRDEHFDFIQSHLRKFCLRYGAA-LIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcc-hhhHHHHHHHHHHHHHHHHHcCce-eEEeecccccchHHHHHHHH
Confidence 257999999999843211000 000011123456789999999999 99999999999999999999
Q ss_pred HHHH
Q psy15714 194 RSAV 197 (205)
Q Consensus 194 ~~~~ 197 (205)
+...
T Consensus 287 hr~y 290 (473)
T KOG3905|consen 287 HRSY 290 (473)
T ss_pred HHhc
Confidence 8754
No 287
>KOG0705|consensus
Probab=99.38 E-value=1.7e-12 Score=103.72 Aligned_cols=165 Identities=19% Similarity=0.348 Sum_probs=130.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
.-.++|+.|+|..++|||+|+++|+.+.|.+... ..+..+.+.+.++++...+.+.|-+|+.. ..|....|++|
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~-~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI 100 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDES-PEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV 100 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccC-CcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence 3467899999999999999999999999977644 45667777888889888899999988433 35788999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
|||.+.+..+++.+. .+...+..+. ..+|+++++++.-.....+ +.+...+++.++....-..+|++
T Consensus 101 fvf~~~d~~s~q~v~-~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~----------rv~~da~~r~l~~~~krcsy~et 169 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQ-ALAHEMSSYRNISDLPLILVGTQDHISAKRP----------RVITDDRARQLSAQMKRCSYYET 169 (749)
T ss_pred EEEEeccccCHHHHH-HHHhhcccccccccchHHhhcCcchhhcccc----------cccchHHHHHHHHhcCccceeec
Confidence 999999999999986 4555554333 6789999998765443332 25666777777666655559999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++.+|.++...|..+...++..++
T Consensus 170 ~atyGlnv~rvf~~~~~k~i~~~~ 193 (749)
T KOG0705|consen 170 CATYGLNVERVFQEVAQKIVQLRK 193 (749)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999988876544
No 288
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.37 E-value=5.2e-12 Score=98.76 Aligned_cols=174 Identities=15% Similarity=0.114 Sum_probs=85.6
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCc--cccccce-eEEECCEEEEEEEEEcCCCccccc-----cccc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPT--VFDNYPD-TITVDNKTYDVTLWDTAGQEDYER-----LRPM 90 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t--~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~ 90 (205)
....++|+|+|.+|+|||||||++.+-.-.+ ...++ ..+.... .+.. .....+.+||+||-....- +...
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 3467899999999999999999998633221 11221 1222222 2222 2233599999999532111 1123
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH--
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK-- 168 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (205)
-+...|.+|++.+ ..|....-.+...+.+. +.|+.+|-+|+|..-............. .-..++.++.+..
T Consensus 111 ~~~~yD~fiii~s----~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~-e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISS----ERFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNE-EKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEES----SS--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--H-HTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeC----CCCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCH-HHHHHHHHHHHHHHH
Confidence 4677898887664 23434333566777777 8999999999996211110000000000 1112222222211
Q ss_pred --c--CCceEEEcccCCC--CCHHHHHHHHHHHHHhhcc
Q psy15714 169 --I--KAAEYLECSAKLN--EGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 169 --~--~~~~~~~~Sa~~~--~~i~~~~~~i~~~~~~~~~ 201 (205)
. ..+++|.+|+.+- +++..+.+.+.+.+...++
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 1 2345899999864 5688888887776555443
No 289
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.36 E-value=7.8e-12 Score=95.36 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=72.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc-------ccc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL-------RPM 90 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~ 90 (205)
....++|+++|.+|+||||++|++++.... ..+.++...........++ .++.++||||....... ...
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 457899999999999999999999987642 2222211111111223455 67999999996543211 111
Q ss_pred Cc--CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccC
Q psy15714 91 SY--PNTDCFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSE 142 (205)
Q Consensus 91 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~ 142 (205)
++ ...|+++||..++.. .+......++..+...+ --.+++|+.|+.|....
T Consensus 113 ~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 11 268999999665432 12222123444444433 13579999999997643
No 290
>KOG3887|consensus
Probab=99.36 E-value=8.5e-12 Score=90.52 Aligned_cols=170 Identities=13% Similarity=0.202 Sum_probs=105.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCccc-ccc--cccCcCCCcEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY-ERL--RPMSYPNTDCFLL 100 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~--~~~~~~~~~~~i~ 100 (205)
.+|+++|...+||||+....+....+..+....-+.....-.+.+.-+.+++||+||+..+ ... ....++++.+++|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 4699999999999999876666554332222111111111123345678999999998764 332 3457899999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH-HHHHcCCceEEE
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK-MRRKIKAAEYLE 176 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 176 (205)
|+|+.+. +.+....+...+.+.. +++.+=|+..|.|...+....+.+..-. +.+.++... -....... ++.
T Consensus 108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~--qr~~d~l~d~gle~v~vs-f~L 182 (347)
T KOG3887|consen 108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIH--QRTNDELADAGLEKVQVS-FYL 182 (347)
T ss_pred EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHH--HHhhHHHHhhhhccceEE-EEE
Confidence 9998653 3333335555555443 7899999999999887766544432222 112222211 11222222 444
Q ss_pred cccCCCCCHHHHHHHHHHHHHhh
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+| .....|-|+|..+++.++.+
T Consensus 183 TS-IyDHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 183 TS-IYDHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred ee-ecchHHHHHHHHHHHHHhhh
Confidence 54 55678999999999988764
No 291
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.34 E-value=1e-11 Score=93.16 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=74.4
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCCCccccc---c------
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER---L------ 87 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~------ 87 (205)
.....++|+|+|.+|+|||||+|++++..... .+.+++..........++ ..+.+|||||-..... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 45677999999999999999999999876432 222222211122233445 5689999999654310 0
Q ss_pred -cccCc--CCCcEEEEEEECCCc-chHHHHHHHHHHHHhhhCC---CCCEEEEeeCcccccCch
Q psy15714 88 -RPMSY--PNTDCFLLCFSIGST-SSYENILSKWYPELKHHCP---KVPIILVGTKADLRSENK 144 (205)
Q Consensus 88 -~~~~~--~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~~ 144 (205)
...++ ...++++||..++.. ....+ ..++..+..... -.++++|.||+|...+..
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 11123 257888888766543 22222 244444544331 257999999999875543
No 292
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.34 E-value=2.4e-11 Score=98.28 Aligned_cols=172 Identities=17% Similarity=0.185 Sum_probs=113.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccccee-EEE--CCEEEEEEEEEcCCCcccccccccCcCC----
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITV--DNKTYDVTLWDTAGQEDYERLRPMSYPN---- 94 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~-~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~---- 94 (205)
..-.|+|+|..++|||||+.+|.+.. .+.++.+-.|... +.- .+....+.+|-+.|...+..+....+..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34589999999999999999987543 2334445444321 211 1234578999999877777776655554
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHh-------------------------hhC------------------------
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELK-------------------------HHC------------------------ 125 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~-------------------------~~~------------------------ 125 (205)
--++|+|.|.+.++.+-+-...|+..++ .+.
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 2468889999988766543334444331 000
Q ss_pred --------------CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHH
Q psy15714 126 --------------PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191 (205)
Q Consensus 126 --------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 191 (205)
-.+|++||.+|+|....-..... -....-....+..+.++-.+|+. ++.+|++...+++-++.+
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~-~~~e~~DfIqq~LR~~cL~yGAs-L~yts~~~~~n~~~L~~y 258 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETD-WKEEHFDFIQQYLRTFCLKYGAS-LIYTSVKEEKNLDLLYKY 258 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcc-cchhhHHHHHHHHHHHHHhcCCe-EEEeeccccccHHHHHHH
Confidence 02699999999997642111100 00000023455689999999999 899999999999999999
Q ss_pred HHHHHHh
Q psy15714 192 AVRSAVK 198 (205)
Q Consensus 192 i~~~~~~ 198 (205)
|.+.+..
T Consensus 259 i~h~l~~ 265 (472)
T PF05783_consen 259 ILHRLYG 265 (472)
T ss_pred HHHHhcc
Confidence 8887654
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.33 E-value=1.3e-11 Score=95.73 Aligned_cols=107 Identities=24% Similarity=0.273 Sum_probs=66.4
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhh
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK 149 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 149 (205)
.+.+.|.||+|...-... ....+|.++++.+......+..... ..++ ..-++|+||+|+.......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~--- 213 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAAR--- 213 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHH---
Confidence 467889999997633321 4677999999976444444443321 1222 2238999999987643110
Q ss_pred hhhccccccHHHHHHHHHHc------CCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 150 KAAEVDLVSTSQGKKMRRKI------KAAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
....+.+...... ...+++.+||+++.|++++++.+.+.+.
T Consensus 214 -------~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 214 -------RAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred -------HHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1111222222111 1145999999999999999999988754
No 294
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.33 E-value=3.4e-11 Score=89.38 Aligned_cols=145 Identities=21% Similarity=0.156 Sum_probs=85.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
......|+++|.+|+|||||++.+....-........+. ..+ ......++.++|+||.. ..+. ..+..+|+++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVl 108 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP---ITV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVL 108 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc---EEE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEE
Confidence 345678999999999999999988864211111111111 111 11234567888999864 2222 2467899999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEE-EEeeCcccccCchhhhhhhhhccccccHHHHHH-HH-HHcCCceEEE
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPII-LVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK-MR-RKIKAAEYLE 176 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 176 (205)
+++|++........ .++..+... +.|.+ +|+||.|+........ .+ ..+.+. +. +.....+++.
T Consensus 109 lviDa~~~~~~~~~--~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~--------~~-~~~l~~~~~~~~~~~~ki~~ 175 (225)
T cd01882 109 LLIDASFGFEMETF--EFLNILQVH--GFPRVMGVLTHLDLFKKNKTLR--------KT-KKRLKHRFWTEVYQGAKLFY 175 (225)
T ss_pred EEEecCcCCCHHHH--HHHHHHHHc--CCCeEEEEEeccccCCcHHHHH--------HH-HHHHHHHHHHhhCCCCcEEE
Confidence 99998865443332 455555554 67854 5999999874321100 11 112222 22 2234456999
Q ss_pred cccCCCCC
Q psy15714 177 CSAKLNEG 184 (205)
Q Consensus 177 ~Sa~~~~~ 184 (205)
+||++.-.
T Consensus 176 iSa~~~~~ 183 (225)
T cd01882 176 LSGIVHGR 183 (225)
T ss_pred EeeccCCC
Confidence 99998743
No 295
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.32 E-value=5.7e-11 Score=93.19 Aligned_cols=156 Identities=13% Similarity=0.177 Sum_probs=95.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC----CCC-------------CCCc----Ccccccc-c-eeEE---ECCEEEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN----KFP-------------TDYV----PTVFDNY-P-DTIT---VDNKTYDVT 74 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~----~~~-------------~~~~----~t~~~~~-~-~~~~---~~~~~~~~~ 74 (205)
...+.|.|+|+.++|||||+++|.+. ... +... .|+...+ + +.+. .++...++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 35688999999999999999999987 222 1111 1222222 1 1122 245667899
Q ss_pred EEEcCCCcc--------ccc---c------------------cccCcC-CCcEEEEEE-ECC----CcchHHHHHHHHHH
Q psy15714 75 LWDTAGQED--------YER---L------------------RPMSYP-NTDCFLLCF-SIG----STSSYENILSKWYP 119 (205)
Q Consensus 75 i~D~~g~~~--------~~~---~------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~ 119 (205)
+.||+|-.. -.. . .+..+. .+++.++|. |.+ .++.+......|+.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999221 111 0 112344 788988888 654 23456666668999
Q ss_pred HHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC--CCCCHHHHHHHHH
Q psy15714 120 ELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK--LNEGLDQVFIAAV 193 (205)
Q Consensus 120 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~i~ 193 (205)
.++.. ++|+++++||.|-... .+.+....+...++.. ++.+|+. ..+.|..+++.++
T Consensus 175 eLk~~--~kPfiivlN~~dp~~~--------------et~~l~~~l~eky~vp-vl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 175 ELKEL--NKPFIILLNSTHPYHP--------------ETEALRQELEEKYDVP-VLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHHhc--CCCEEEEEECcCCCCc--------------hhHHHHHHHHHHhCCc-eEEEEHHHcCHHHHHHHHHHHH
Confidence 99988 9999999999994321 1233344555555644 5555554 3345555555544
No 296
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.31 E-value=6.9e-11 Score=86.98 Aligned_cols=165 Identities=18% Similarity=0.155 Sum_probs=93.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CccccccceeEEECCEEEEEEEEEcCCCcccc--------ccc---c
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYV---PTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE--------RLR---P 89 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~---~ 89 (205)
++|+++|..|+||||++|.+++........ +.+..........++ ..+.++||||-.... .+. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999876533221 111222233446677 557889999932211 111 1
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-C--CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-P--KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR 166 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (205)
...++.+++++|+..+ +-+-.+. ..+..+...+ + -..++||.|..|........+.. . .-.....+.+.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~--~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l---~--~~~~~~l~~li 150 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDR--EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYL---K--KESNEALQELI 150 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHH--HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHH---H--HHHHHHHHHHH
T ss_pred hccCCCeEEEEEEecC-cchHHHH--HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHH---h--ccCchhHhHHh
Confidence 2356799999999988 3332222 2333333322 1 24588889988876554211100 0 01123466777
Q ss_pred HHcCCceEEEcccC------CCCCHHHHHHHHHHHHHhh
Q psy15714 167 RKIKAAEYLECSAK------LNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 167 ~~~~~~~~~~~Sa~------~~~~i~~~~~~i~~~~~~~ 199 (205)
+..+.. |+..+.. ....+.+++..|-+.+...
T Consensus 151 ~~c~~R-~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 151 EKCGGR-YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp HHTTTC-EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcCCE-EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 777877 7776666 3356777777776665554
No 297
>KOG0461|consensus
Probab=99.29 E-value=7.6e-11 Score=89.84 Aligned_cols=168 Identities=19% Similarity=0.112 Sum_probs=104.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC----CCcCcc-cccc---ceeEE-------ECCEEEEEEEEEcCCCcccc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPT----DYVPTV-FDNY---PDTIT-------VDNKTYDVTLWDTAGQEDYE 85 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~----~~~~t~-~~~~---~~~~~-------~~~~~~~~~i~D~~g~~~~~ 85 (205)
...+++.++|.-.+|||||.+++..-.... ...++. +... -.... -.+...++++.|+|||...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 345999999999999999999988533221 111111 0000 00111 13566889999999998765
Q ss_pred cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714 86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (205)
.......+-.|..++|+|+.....-+.+.-.++..+. ....+||+||+|...+..+.. -....+..+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~s---------ki~k~~kk~ 151 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRAS---------KIEKSAKKV 151 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhh---------HHHHHHHHH
Confidence 5444556678999999999876544443212222222 456788889988766542211 111122222
Q ss_pred HHH------cCCceEEEcccCCC----CCHHHHHHHHHHHHHhhcc
Q psy15714 166 RRK------IKAAEYLECSAKLN----EGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 166 ~~~------~~~~~~~~~Sa~~~----~~i~~~~~~i~~~~~~~~~ 201 (205)
.+- .+..|++++||..| ++|.++.+.+-+.+...++
T Consensus 152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 222 24567999999999 7888888888887776554
No 298
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.29 E-value=6.1e-11 Score=87.01 Aligned_cols=154 Identities=18% Similarity=0.123 Sum_probs=83.5
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCC--------C----CCcCcccccc-ceeEEE-CC----------------
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFP--------T----DYVPTVFDNY-PDTITV-DN---------------- 68 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~--------~----~~~~t~~~~~-~~~~~~-~~---------------- 68 (205)
.......|+++|+.|+|||||++++...... . .......... ...+.. ++
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 3445778999999999999999887743100 0 0000000000 001111 11
Q ss_pred ---EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchh
Q psy15714 69 ---KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKT 145 (205)
Q Consensus 69 ---~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 145 (205)
..+.+.|.++.|.-.... .+....+..+.|+|+.+...... ...... ..|.++++||+|+....
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~------~~~~~~--~~a~iiv~NK~Dl~~~~-- 164 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL------KYPGMF--KEADLIVINKADLAEAV-- 164 (207)
T ss_pred hccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh------hhHhHH--hhCCEEEEEHHHccccc--
Confidence 124566777777211111 11123445566777765432111 111111 56789999999997532
Q ss_pred hhhhhhhccccccHHHHHHHHHHc-CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 146 IDKKKAAEVDLVSTSQGKKMRRKI-KAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
.....+.....+.. ...+++++||++++|++++|+++.+.
T Consensus 165 ----------~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 165 ----------GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred ----------hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 11122233333332 33459999999999999999999764
No 299
>KOG3886|consensus
Probab=99.28 E-value=1.4e-11 Score=88.80 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=78.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCcccccc-ceeEEECCEEEEEEEEEcCCCccc-----ccccccCcCCCc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDY-----ERLRPMSYPNTD 96 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~~ 96 (205)
-||+++|..|+|||++=..++.+.... ...++...++ ...+.+-| +..+.+||++|++.+ .......+.+.+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 489999999999999865555332211 1111111111 11222222 256999999999843 234567899999
Q ss_pred EEEEEEECCCcchHHHHHHHH---HHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714 97 CFLLCFSIGSTSSYENILSKW---YPELKHHCPKVPIILVGTKADLRSENK 144 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 144 (205)
++++|||++.++--.++. +. +..+.++.|...+.+..+|.|+.....
T Consensus 84 vli~vFDves~e~~~D~~-~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFH-YYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred eeeeeeeccchhhhhhHH-HHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence 999999999886555554 33 455556668888999999999987653
No 300
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.27 E-value=4.8e-11 Score=102.42 Aligned_cols=116 Identities=14% Similarity=0.048 Sum_probs=76.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCc---------Ccc---cccc-ce--e--EEECCEEEEEEEEEcCCCc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTEN--KFPTDYV---------PTV---FDNY-PD--T--ITVDNKTYDVTLWDTAGQE 82 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~---------~t~---~~~~-~~--~--~~~~~~~~~~~i~D~~g~~ 82 (205)
+--+|+++|+.++|||||+.+++.. ....... +.. +... .. . ...++..+.+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4447999999999999999998742 2111000 000 0000 00 1 1123446788999999999
Q ss_pred ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc
Q psy15714 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141 (205)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 141 (205)
+|.......+..+|++|+|+|+.......... .|.. .... +.|.++++||+|+..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~-~~~~-~~~~--~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET-VLRQ-ALRE--RVKPVLFINKVDRLI 153 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHH-HHHH-HHHc--CCCeEEEEECchhhc
Confidence 88777777889999999999988764433322 3332 2333 678899999999864
No 301
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.26 E-value=1.2e-10 Score=88.83 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=69.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCc----------Ccccc-ccceeEEECCEEEEEEEEEcCCCcc-------
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYV----------PTVFD-NYPDTITVDNKTYDVTLWDTAGQED------- 83 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~----------~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~------- 83 (205)
-.++|+|+|..|+|||||++.|++........ .+... .....+.-++..+.+.++||||-..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 46899999999999999999999875533310 11111 1122344578889999999999111
Q ss_pred -----------ccc-------ccccCc--CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 84 -----------YER-------LRPMSY--PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 84 -----------~~~-------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
|.. ..+..+ ...++++|.++++.. .+..+ =+..+++....+++|.|+.|+|.....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~---Di~~mk~Ls~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPL---DIEFMKRLSKRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HH---HHHHHHHHTTTSEEEEEESTGGGS-HH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHH---HHHHHHHhcccccEEeEEecccccCHH
Confidence 110 011112 336778888887643 22222 223455555579999999999987654
Q ss_pred h
Q psy15714 144 K 144 (205)
Q Consensus 144 ~ 144 (205)
.
T Consensus 159 e 159 (281)
T PF00735_consen 159 E 159 (281)
T ss_dssp H
T ss_pred H
Confidence 3
No 302
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.24 E-value=1.5e-10 Score=91.32 Aligned_cols=159 Identities=13% Similarity=0.049 Sum_probs=105.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCCCCc-------Ccc-----cccc-ceeEEECCEEEEEEEEEcCCCccccccc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN--KFPTDYV-------PTV-----FDNY-PDTITVDNKTYDVTLWDTAGQEDYERLR 88 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~--~~~~~~~-------~t~-----~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 88 (205)
-+|+|+....-|||||+..++.. .|..... +.. +... .+.-.+..+.+.+.|.|||||..|-.--
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 37899999999999999988853 3322100 000 1111 1222233444789999999999999888
Q ss_pred ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714 89 PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK 168 (205)
Q Consensus 89 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (205)
++.+.=.|++++++|+.+..--+.- +.+...... +.+-|||.||+|.+..++.+- .++...+--.
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQTr--FVlkKAl~~--gL~PIVVvNKiDrp~Arp~~V-----------vd~vfDLf~~ 150 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQTR--FVLKKALAL--GLKPIVVINKIDRPDARPDEV-----------VDEVFDLFVE 150 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCchh--hhHHHHHHc--CCCcEEEEeCCCCCCCCHHHH-----------HHHHHHHHHH
Confidence 8899999999999999886543331 333333233 788899999999998876421 2222222222
Q ss_pred -------cCCceEEEcccCCCC----------CHHHHHHHHHHHHHh
Q psy15714 169 -------IKAAEYLECSAKLNE----------GLDQVFIAAVRSAVK 198 (205)
Q Consensus 169 -------~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~ 198 (205)
++.+ ++..|+..|+ ++..+|+.|++.+..
T Consensus 151 L~A~deQLdFP-ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 151 LGATDEQLDFP-IVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred hCCChhhCCCc-EEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 3444 8889988764 588899998887543
No 303
>PTZ00416 elongation factor 2; Provisional
Probab=99.22 E-value=4.1e-11 Score=103.97 Aligned_cols=116 Identities=12% Similarity=0.122 Sum_probs=77.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCcCcc------ccccce---------eEEEC--------CEEEEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTDYVPTV------FDNYPD---------TITVD--------NKTYDVTL 75 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~t~------~~~~~~---------~~~~~--------~~~~~~~i 75 (205)
.+.-+|+++|+.++|||||+++++.. ........+. ...... ..... +....+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 33449999999999999999998852 2111100000 000000 11111 22567899
Q ss_pred EEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714 76 WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR 140 (205)
Q Consensus 76 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 140 (205)
+||||+.+|.......++.+|++|+|+|+.+.-..... ..+..+... ++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~--~~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE--TVLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH--HHHHHHHHc--CCCEEEEEEChhhh
Confidence 99999998877667788999999999999886544443 333444444 78999999999987
No 304
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.22 E-value=4.4e-11 Score=103.93 Aligned_cols=117 Identities=14% Similarity=0.086 Sum_probs=78.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCC---------cCcc---ccccc---eeEEE--------------CC
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENK--FPTDY---------VPTV---FDNYP---DTITV--------------DN 68 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~---------~~t~---~~~~~---~~~~~--------------~~ 68 (205)
..+--+|+|+|+.++|||||+.+++... ..... .+.. +.... ..... .+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 3445689999999999999999987532 11100 0000 00000 01111 12
Q ss_pred EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714 69 KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR 140 (205)
Q Consensus 69 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 140 (205)
..+.+.++|+|||.+|-......++.+|++|+|+|+.+........ .| ..+... ++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~-~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HH-HHHHHC--CCCEEEEEECCccc
Confidence 3577899999999999877777889999999999998775544432 33 334344 89999999999987
No 305
>PTZ00258 GTP-binding protein; Provisional
Probab=99.22 E-value=2.1e-10 Score=90.70 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=55.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCE---------------EEEEEEEEcCCCcc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQED 83 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~ 83 (205)
....++|.++|.|++|||||++++.+.... .+++.++.......+.+.+. ..++.+.|+||-..
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 356679999999999999999999876542 33444432222222222221 23588999999432
Q ss_pred c----ccc---cccCcCCCcEEEEEEECC
Q psy15714 84 Y----ERL---RPMSYPNTDCFLLCFSIG 105 (205)
Q Consensus 84 ~----~~~---~~~~~~~~~~~i~v~d~~ 105 (205)
- ..+ .-..++.+|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 111 112467899999999973
No 306
>KOG0082|consensus
Probab=99.21 E-value=4.3e-10 Score=87.05 Aligned_cols=133 Identities=15% Similarity=0.186 Sum_probs=85.1
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcch-------HHHHHHHHHHHHhhhC-----CCCCEEEEeeCc
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSS-------YENILSKWYPELKHHC-----PKVPIILVGTKA 137 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~ 137 (205)
...+.++|.|||..-+..|.+.+.++++++||.++++... ...+. +-+..+...+ .+.++++++||.
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~-eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMH-ESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHH-HHHHHHHHHhcCcccccCcEEEEeecH
Confidence 3668899999999999999999999999999999885321 11222 2233333222 689999999999
Q ss_pred ccccCchhhh--hhhhhcccc-ccHHHHHH--------HHHHc-CCceEEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714 138 DLRSENKTID--KKKAAEVDL-VSTSQGKK--------MRRKI-KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKS 203 (205)
Q Consensus 138 Dl~~~~~~~~--~~~~~~~~~-~~~~~~~~--------~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 203 (205)
||....-... ..-+++... -+.+++.. +.+.. .-..+..+.|.+-.+|+.+|..+...++...-+.
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~ 350 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKD 350 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9864322110 000111111 22333322 22222 1222566799999999999999999998876554
No 307
>KOG1143|consensus
Probab=99.20 E-value=2.1e-10 Score=88.30 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=108.6
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC------------------cCcc-----cccc-ceeEEEC----
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDY------------------VPTV-----FDNY-PDTITVD---- 67 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~------------------~~t~-----~~~~-~~~~~~~---- 67 (205)
+.....-++|++|+|...+|||||+..+.++...... .+.+ +.+- .+.+.+.
T Consensus 160 Pd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 160 PDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred CCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 4556678899999999999999999888876553211 0000 0000 1111111
Q ss_pred ------CEEEEEEEEEcCCCcccccccccCcCC--CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccc
Q psy15714 68 ------NKTYDVTLWDTAGQEDYERLRPMSYPN--TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL 139 (205)
Q Consensus 68 ------~~~~~~~i~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 139 (205)
....-++++|++|+.+|.....+.+.. .+...+|++++....+..- +.+..+... ++|+.|+.+|+|+
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr--EHLgl~~AL--~iPfFvlvtK~Dl 315 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR--EHLGLIAAL--NIPFFVLVTKMDL 315 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH--HHHHHHHHh--CCCeEEEEEeecc
Confidence 123458899999999998776555444 6778888888766554442 566777766 9999999999999
Q ss_pred ccCchhhh-------hhhhhccc-----cccHHHHHHHHHHc---CCceEEEcccCCCCCHHHHH
Q psy15714 140 RSENKTID-------KKKAAEVD-----LVSTSQGKKMRRKI---KAAEYLECSAKLNEGLDQVF 189 (205)
Q Consensus 140 ~~~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~ 189 (205)
.+..-... .....+.. .-+..++...+.+. ++.|++.+|..+|+|++-+.
T Consensus 316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 87733222 11111111 12344444444443 56779999999999987543
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.15 E-value=1.5e-10 Score=82.12 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=44.7
Q ss_pred EEEEEEcCCCcc----cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCc
Q psy15714 72 DVTLWDTAGQED----YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137 (205)
Q Consensus 72 ~~~i~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 137 (205)
.+.|+|+||-.. .......+++.+|++++|.+++...+-.+.. +|....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcCC--CCeEEEEEcCC
Confidence 378999999633 2344566789999999999998866555543 666666655 44599999984
No 309
>KOG1487|consensus
Probab=99.14 E-value=3.7e-10 Score=82.95 Aligned_cols=154 Identities=18% Similarity=0.125 Sum_probs=100.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCccc------cc-ccccCc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY------ER-LRPMSY 92 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~-~~~~~~ 92 (205)
....|+-++|.|.+||||++..+.+.... ..+..|+-....-.+.+.+ .++++.|+||-.+- +. ......
T Consensus 57 tg~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviava 134 (358)
T KOG1487|consen 57 TGDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVA 134 (358)
T ss_pred ecceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEe
Confidence 34458999999999999999888775432 3445555555555555666 56888899994321 11 122457
Q ss_pred CCCcEEEEEEECCCcchHHHHHH---------------------------------------------------------
Q psy15714 93 PNTDCFLLCFSIGSTSSYENILS--------------------------------------------------------- 115 (205)
Q Consensus 93 ~~~~~~i~v~d~~~~~s~~~~~~--------------------------------------------------------- 115 (205)
+.|+.+++|.|+..+-+...+.+
T Consensus 135 rtcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~ 214 (358)
T KOG1487|consen 135 RTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRF 214 (358)
T ss_pred ecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeec
Confidence 88999999999887655555443
Q ss_pred -----HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHH
Q psy15714 116 -----KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190 (205)
Q Consensus 116 -----~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 190 (205)
.+++.++...-.+|.+.++||+|-.+ .++ +--.+.+.+.+.+||..++|++++++
T Consensus 215 DaT~DdLIdvVegnr~yVp~iyvLNkIdsIS-----------------iEE---Ldii~~iphavpISA~~~wn~d~lL~ 274 (358)
T KOG1487|consen 215 DATADDLIDVVEGNRIYVPCIYVLNKIDSIS-----------------IEE---LDIIYTIPHAVPISAHTGWNFDKLLE 274 (358)
T ss_pred CcchhhhhhhhccCceeeeeeeeecccceee-----------------eec---cceeeeccceeecccccccchHHHHH
Confidence 12222222212467788888888433 222 11223455689999999999999999
Q ss_pred HHHHHH
Q psy15714 191 AAVRSA 196 (205)
Q Consensus 191 ~i~~~~ 196 (205)
.+...+
T Consensus 275 ~mweyL 280 (358)
T KOG1487|consen 275 KMWEYL 280 (358)
T ss_pred HHhhcc
Confidence 887654
No 310
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.12 E-value=2.4e-09 Score=83.95 Aligned_cols=82 Identities=21% Similarity=0.171 Sum_probs=53.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCE---------------EEEEEEEEcCCCccc---
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQEDY--- 84 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~--- 84 (205)
++|.++|.|++|||||++++++.... .+++.++.....-.+.+.+. ..++.+.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987642 33444442222222222221 135889999994321
Q ss_pred -ccc---cccCcCCCcEEEEEEECC
Q psy15714 85 -ERL---RPMSYPNTDCFLLCFSIG 105 (205)
Q Consensus 85 -~~~---~~~~~~~~~~~i~v~d~~ 105 (205)
+.+ .-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 111 122467899999999974
No 311
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.11 E-value=1.5e-09 Score=83.97 Aligned_cols=111 Identities=21% Similarity=0.180 Sum_probs=63.8
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhh
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK 149 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 149 (205)
.+.+.|.|++|..... ...+..+|.++++-+... -+++. .....+ .++|.++|+||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~-~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQ-GIKAGL----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHH-HHHHHH----hhhccEEEEEcccccchhHHHHHH
Confidence 4678899999854222 124667788888754433 33332 111212 267889999999987543110000
Q ss_pred hhhccccccHHHHHHHHHH-cCC-ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 150 KAAEVDLVSTSQGKKMRRK-IKA-AEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
... ......+... .+. .+++.+||+++.|++++++++.+...
T Consensus 195 ~~~------~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LML------ALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHH------HHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 000 0000111111 111 24899999999999999999988643
No 312
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=4.9e-10 Score=84.71 Aligned_cols=168 Identities=18% Similarity=0.137 Sum_probs=105.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC---CC----------CCcCcc----c-----cccce--eEEEC----CEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKF---PT----------DYVPTV----F-----DNYPD--TITVD----NKTYD 72 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~---~~----------~~~~t~----~-----~~~~~--~~~~~----~~~~~ 72 (205)
...++|..+|...-|||||.+++.+-.. ++ .|..+. . ..+.. ..... .-.-.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 5679999999999999999999886311 11 000000 0 01100 01111 12345
Q ss_pred EEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhh
Q psy15714 73 VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAA 152 (205)
Q Consensus 73 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 152 (205)
+.+.|.|||+-.-...-.-..-.|++++|+.++.+.---.-. +.+..+.-. .-..++++-||+|+.+....
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~-EHl~AleIi-gik~iiIvQNKIDlV~~E~A------- 158 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTR-EHLMALEII-GIKNIIIVQNKIDLVSRERA------- 158 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchH-HHHHHHhhh-ccceEEEEecccceecHHHH-------
Confidence 778899999876555444556689999999988653111111 222222222 24568999999999876432
Q ss_pred ccccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 153 EVDLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 153 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
.-..++.++|.+.- ...|++.+||..+.||+-+++.|...+....
T Consensus 159 ---lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 159 ---LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred ---HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 22445566665554 2345999999999999999999988875543
No 313
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.07 E-value=8e-10 Score=79.99 Aligned_cols=95 Identities=21% Similarity=0.201 Sum_probs=65.3
Q ss_pred cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK 163 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (205)
++.++..+++.+|++++|+|+.+... .|...+.....+.|+++|+||+|+.... ...+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~------~~~~~l~~~~~~~~~ilV~NK~Dl~~~~-------------~~~~~~~ 84 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG------SLIPRLRLFGGNNPVILVGNKIDLLPKD-------------KNLVRIK 84 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC------ccchhHHHhcCCCcEEEEEEchhcCCCC-------------CCHHHHH
Confidence 56777888999999999999987642 1222222223478999999999986532 2222222
Q ss_pred HHH-----HHcCC--ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 164 KMR-----RKIKA--AEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 164 ~~~-----~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
.+. +..+. ..++.+||++++|++++++.+.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 85 NWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 222 22222 24899999999999999999988653
No 314
>KOG0458|consensus
Probab=99.07 E-value=3.1e-09 Score=85.99 Aligned_cols=158 Identities=17% Similarity=0.087 Sum_probs=98.9
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcC--------------------CCC----CCCcCccccc-----c-ceeEEECC
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTEN--------------------KFP----TDYVPTVFDN-----Y-PDTITVDN 68 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~--------------------~~~----~~~~~t~~~~-----~-~~~~~~~~ 68 (205)
.+...+.++|+|...+|||||..+++.. +.. ...+.|...+ . ....++.-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3447799999999999999999887631 111 1111121111 1 12344556
Q ss_pred EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHH------HHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 69 KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYEN------ILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 69 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
....++|.|.|||..|-.........+|++|+|+|++..+ |+. -..+....++.. .-..++|++||+|+.+=
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSW 330 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCc
Confidence 6678999999999999988888899999999999988431 211 011222223222 24567899999998753
Q ss_pred chhhhhhhhhccccccHHHHHHHH-HHcCC----ceEEEcccCCCCCHH
Q psy15714 143 NKTIDKKKAAEVDLVSTSQGKKMR-RKIKA----AEYLECSAKLNEGLD 186 (205)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~ 186 (205)
..... +...+....+. +..+. ..+++||+..|+|+-
T Consensus 331 sq~RF--------~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 331 SQDRF--------EEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred cHHHH--------HHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence 31100 12233344444 33332 249999999999974
No 315
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.04 E-value=1.1e-09 Score=81.17 Aligned_cols=100 Identities=22% Similarity=0.275 Sum_probs=60.1
Q ss_pred EEEEEEEcCC--CcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhh
Q psy15714 71 YDVTLWDTAG--QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDK 148 (205)
Q Consensus 71 ~~~~i~D~~g--~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 148 (205)
+.+.|.+|.| |.+. ....-+|.+++|..+.-...++.++.-.+. +.=++|+||.|+.....
T Consensus 122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vVNKaD~~gA~~---- 184 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVVNKADRPGADR---- 184 (266)
T ss_dssp -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEEE--SHHHHHH----
T ss_pred CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEEeCCChHHHHH----
Confidence 5577777765 4432 246779999999988766665554422222 23389999999655432
Q ss_pred hhhhccccccHHHHHHHHHHcC------CceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 149 KKAAEVDLVSTSQGKKMRRKIK------AAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
...+.+....... .+|++.+||..+.|++++++.|.+..
T Consensus 185 ---------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 185 ---------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp ---------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 1222222222111 24699999999999999999987753
No 316
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.04 E-value=7.3e-10 Score=77.63 Aligned_cols=95 Identities=17% Similarity=0.081 Sum_probs=64.0
Q ss_pred ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK 164 (205)
Q Consensus 85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (205)
+.+.++.++++|++++|+|+.++...... .+...+... +.|+++|+||+|+.... .. +....
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~~--~~p~iiv~NK~Dl~~~~------------~~--~~~~~ 64 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLEL--GKKLLIVLNKADLVPKE------------VL--EKWKS 64 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHhC--CCcEEEEEEhHHhCCHH------------HH--HHHHH
Confidence 45566778889999999999876433221 233333333 78999999999985421 11 11112
Q ss_pred HHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 165 MRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 165 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
+.+..+.. ++.+||+++.|++++++.+.+.+..
T Consensus 65 ~~~~~~~~-~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 65 IKESEGIP-VVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred HHHhCCCc-EEEEEccccccHHHHHHHHHHHHhh
Confidence 23333444 8999999999999999999877654
No 317
>PRK00098 GTPase RsgA; Reviewed
Probab=99.03 E-value=1.6e-09 Score=83.63 Aligned_cols=87 Identities=24% Similarity=0.219 Sum_probs=65.4
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
.+.++|.+++|+|+.++.........|+..+... ++|+++|+||+|+.... . ..++.....+..+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~------------~-~~~~~~~~~~~~g 141 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDL------------E-EARELLALYRAIG 141 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCH------------H-HHHHHHHHHHHCC
Confidence 4689999999999988876666655787776654 89999999999996321 1 1222333445556
Q ss_pred CceEEEcccCCCCCHHHHHHHHH
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAV 193 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~ 193 (205)
.. ++++||++++|++++++.+.
T Consensus 142 ~~-v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 142 YD-VLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred Ce-EEEEeCCCCccHHHHHhhcc
Confidence 54 99999999999999998764
No 318
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.03 E-value=2.4e-09 Score=79.67 Aligned_cols=70 Identities=21% Similarity=0.140 Sum_probs=45.3
Q ss_pred EEEEEEEcCCCcc-------------cccccccCcC-CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q psy15714 71 YDVTLWDTAGQED-------------YERLRPMSYP-NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136 (205)
Q Consensus 71 ~~~~i~D~~g~~~-------------~~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 136 (205)
..+.+.|+||-.. .+.+...+++ ..+++++|.|+...-.-.+.. .+...+... +.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l-~ia~~ld~~--~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL-KLAKEVDPQ--GERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH-HHHHHHHHc--CCcEEEEEEC
Confidence 5688999999642 1122344566 456999999986543322322 344444444 8999999999
Q ss_pred cccccCc
Q psy15714 137 ADLRSEN 143 (205)
Q Consensus 137 ~Dl~~~~ 143 (205)
.|.....
T Consensus 202 ~D~~~~~ 208 (240)
T smart00053 202 LDLMDEG 208 (240)
T ss_pred CCCCCcc
Confidence 9987643
No 319
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.02 E-value=4.7e-09 Score=78.94 Aligned_cols=108 Identities=22% Similarity=0.231 Sum_probs=66.0
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhh
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK 149 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 149 (205)
.+.+.|.+|.|--..+. ...+-+|.+++|.-..-....+.++.-.+. +-=++|+||.|..........
T Consensus 143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE--------iaDi~vINKaD~~~A~~a~r~- 210 (323)
T COG1703 143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIME--------IADIIVINKADRKGAEKAARE- 210 (323)
T ss_pred CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhh--------hhheeeEeccChhhHHHHHHH-
Confidence 35677888876433332 356778999998877766666666532222 223899999996544221110
Q ss_pred hhhccccccHHHHHHHH----HHcC-CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 150 KAAEVDLVSTSQGKKMR----RKIK-AAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 150 ~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
...+..+. ...+ .++++.+||..|+|++++++.|.+....
T Consensus 211 ---------l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 211 ---------LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred ---------HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 00111111 1112 2448999999999999999999877544
No 320
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.02 E-value=2.7e-09 Score=80.92 Aligned_cols=80 Identities=19% Similarity=0.144 Sum_probs=50.8
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCE---------------EEEEEEEEcCCCccc----c
Q psy15714 26 VTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQEDY----E 85 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~----~ 85 (205)
|+++|.|++|||||++++++.... .++..++.......+.+.+. ..++++.|+||-..- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999987652 33444432222222333321 235899999994321 1
Q ss_pred cc---cccCcCCCcEEEEEEECC
Q psy15714 86 RL---RPMSYPNTDCFLLCFSIG 105 (205)
Q Consensus 86 ~~---~~~~~~~~~~~i~v~d~~ 105 (205)
.+ .-..++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11 112357899999999863
No 321
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.01 E-value=1e-08 Score=72.64 Aligned_cols=102 Identities=20% Similarity=0.141 Sum_probs=60.8
Q ss_pred EEEEEEEcCCCcccccccccCcCCCc-EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhh
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTD-CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK 149 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 149 (205)
..+.+++.+|. .- .+.-..-.+ .-|+|+|++..+-.-. .-...+. . .=++|+||.|+...-
T Consensus 97 ~Dll~iEs~GN--L~--~~~sp~L~d~~~v~VidvteGe~~P~---K~gP~i~----~-aDllVInK~DLa~~v------ 158 (202)
T COG0378 97 LDLLFIESVGN--LV--CPFSPDLGDHLRVVVIDVTEGEDIPR---KGGPGIF----K-ADLLVINKTDLAPYV------ 158 (202)
T ss_pred CCEEEEecCcc--ee--cccCcchhhceEEEEEECCCCCCCcc---cCCCcee----E-eeEEEEehHHhHHHh------
Confidence 34555566661 11 111223344 7888888876543211 1001110 1 248999999998753
Q ss_pred hhhccccccHHHHHHHHHH-cCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 150 KAAEVDLVSTSQGKKMRRK-IKAAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
..+.+.....++. .+-.+++++|+++|+|++++++|+....
T Consensus 159 ------~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 159 ------GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ------CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3444544444444 4556699999999999999999987654
No 322
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=4.4e-09 Score=82.79 Aligned_cols=154 Identities=19% Similarity=0.114 Sum_probs=101.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccc-cceeE---EECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDN-YPDTI---TVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~-~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.|...|.-.-|||||+.++.+..-.. .+..... .+..+ ..+.....+.+.|.||++++-...-..+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~--l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDR--LPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhccccccc--chhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 47788999999999999998765422 1111111 11111 112223478899999999987776677889999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH--cCCceEEEc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK--IKAAEYLEC 177 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 177 (205)
|+++++.-..+.. +.+..+... +++ .++|+||+|..+... ..+..++.... +...+++.+
T Consensus 80 vV~~deGl~~qtg--EhL~iLdll--gi~~giivltk~D~~d~~r-------------~e~~i~~Il~~l~l~~~~i~~~ 142 (447)
T COG3276 80 VVAADEGLMAQTG--EHLLILDLL--GIKNGIIVLTKADRVDEAR-------------IEQKIKQILADLSLANAKIFKT 142 (447)
T ss_pred EEeCccCcchhhH--HHHHHHHhc--CCCceEEEEeccccccHHH-------------HHHHHHHHHhhccccccccccc
Confidence 9999765443333 333444333 444 499999999876531 11112222211 344458999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy15714 178 SAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~ 197 (205)
|+++|.||+++.+.|.....
T Consensus 143 s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 143 SAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred ccccCCCHHHHHHHHHHhhh
Confidence 99999999999999998883
No 323
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.99 E-value=6.6e-09 Score=80.12 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=74.2
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC----------cCcccccc-ceeEEECCEEEEEEEEEcCCCcc----
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDY----------VPTVFDNY-PDTITVDNKTYDVTLWDTAGQED---- 83 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~----------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~---- 83 (205)
.....+.|+++|+.|.|||||+|.+++....... .++..... ...+.-++..+.++++||||-..
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 4467899999999999999999999987554331 11111111 12334468889999999999111
Q ss_pred --------------cc--------cccccCcCCCc--EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccc
Q psy15714 84 --------------YE--------RLRPMSYPNTD--CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL 139 (205)
Q Consensus 84 --------------~~--------~~~~~~~~~~~--~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 139 (205)
|+ ..+...+.+.. +++|.+.++. ..+..+. +..+++....+.+|.|..|+|.
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~D---Ie~Mk~ls~~vNlIPVI~KaD~ 174 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLD---IEAMKRLSKRVNLIPVIAKADT 174 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHH---HHHHHHHhcccCeeeeeecccc
Confidence 11 11111344444 4444444332 2333332 2334444456889999999998
Q ss_pred ccCchh
Q psy15714 140 RSENKT 145 (205)
Q Consensus 140 ~~~~~~ 145 (205)
.....+
T Consensus 175 lT~~El 180 (373)
T COG5019 175 LTDDEL 180 (373)
T ss_pred CCHHHH
Confidence 766543
No 324
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.97 E-value=5.6e-09 Score=79.33 Aligned_cols=57 Identities=18% Similarity=0.056 Sum_probs=39.7
Q ss_pred CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH-HHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 127 KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR-RKIKAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 127 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
..+-++|+||+|+.... ....+...... +.....+++.+||++|+|++++.+||...
T Consensus 230 ~~ADIVVLNKiDLl~~~------------~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYL------------NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCccc------------HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46679999999997531 11222333333 33344559999999999999999999774
No 325
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=4.1e-09 Score=89.06 Aligned_cols=121 Identities=18% Similarity=0.113 Sum_probs=82.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc--CCCCC---CCcCcccccc-----ce-------eEEECCE-EEEEEEEEcCCC
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE--NKFPT---DYVPTVFDNY-----PD-------TITVDNK-TYDVTLWDTAGQ 81 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~---~~~~t~~~~~-----~~-------~~~~~~~-~~~~~i~D~~g~ 81 (205)
..+.-+|.++|+-++|||||..+++. +.... ........++ .. ..+.... .+.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 44556899999999999999988763 22211 0000000000 01 1111122 478999999999
Q ss_pred cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 144 (205)
-+|..-..+.++-+|++|+|+|+...-..+.-. -| ....++ ++|.+++.||+|....+.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEt-v~-rqa~~~--~vp~i~fiNKmDR~~a~~ 145 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTET-VW-RQADKY--GVPRILFVNKMDRLGADF 145 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHH-HH-HHHhhc--CCCeEEEEECccccccCh
Confidence 999988888899999999999998875554432 34 444444 899999999999876543
No 326
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.94 E-value=4.3e-09 Score=83.40 Aligned_cols=96 Identities=24% Similarity=0.312 Sum_probs=70.4
Q ss_pred CcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHH
Q psy15714 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (205)
.+.|+.+...+.+.++++++|+|+.+... .|...+.+...+.|+++|+||+|+... ....+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k-------------~~~~~ 110 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPK-------------SVNLS 110 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCC-------------CCCHH
Confidence 45788888888899999999999976542 344455554457899999999999753 22223
Q ss_pred HH----HHHHHHcCCc--eEEEcccCCCCCHHHHHHHHHHH
Q psy15714 161 QG----KKMRRKIKAA--EYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 161 ~~----~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
+. +++++..+.. .++.+||++++|++++|+.+.+.
T Consensus 111 ~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 111 KIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 33 3345566653 48999999999999999998654
No 327
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=9.5e-09 Score=80.80 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=81.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHh--cCCCCC--------CCcCc----------ccccc-ceeEEECCEEEEEEEEEcCC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHT--ENKFPT--------DYVPT----------VFDNY-PDTITVDNKTYDVTLWDTAG 80 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~--~~~~~~--------~~~~t----------~~~~~-~~~~~~~~~~~~~~i~D~~g 80 (205)
+.-..+|+-.|.+|||||-.+++ ++.+.. ....+ .+..+ +....++...+.+.|.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 33467999999999999997765 221110 00000 02222 22334455557789999999
Q ss_pred CcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchh
Q psy15714 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKT 145 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 145 (205)
|+.|..-.=+.+..+|.+|.|+|+...-.-+.+ .+....+.. ++|++-++||.|.....+.
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrlR--~iPI~TFiNKlDR~~rdP~ 151 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRLR--DIPIFTFINKLDREGRDPL 151 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhhc--CCceEEEeeccccccCChH
Confidence 999876544568899999999999876555554 566666655 9999999999998776543
No 328
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.93 E-value=6e-09 Score=80.11 Aligned_cols=88 Identities=19% Similarity=0.151 Sum_probs=65.9
Q ss_pred ccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714 89 PMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR 167 (205)
Q Consensus 89 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (205)
...+.++|.+++|+|+.++. ++..+. .|+..+... ++|+++|+||+||.... . ......+..
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ld-r~L~~~~~~--~ip~iIVlNK~DL~~~~------------~--~~~~~~~~~ 135 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLD-RYLVAAEAA--GIEPVIVLTKADLLDDE------------E--EELELVEAL 135 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHH-HHHHHHHHc--CCCEEEEEEHHHCCChH------------H--HHHHHHHHH
Confidence 34588999999999999887 777765 687777655 89999999999996531 1 111222334
Q ss_pred HcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714 168 KIKAAEYLECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 194 (205)
..+.. ++.+||+++.|+++++..+..
T Consensus 136 ~~g~~-v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 136 ALGYP-VLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred hCCCe-EEEEECCCCccHHHHHhhhcc
Confidence 45554 899999999999999987753
No 329
>KOG1547|consensus
Probab=98.93 E-value=8.7e-09 Score=75.05 Aligned_cols=119 Identities=20% Similarity=0.204 Sum_probs=72.1
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCC---------CcCcccccc-ceeEEECCEEEEEEEEEcCCC-------
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTD---------YVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ------- 81 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~---------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~------- 81 (205)
...-+++|+|+|.+|.|||||++.++....... +..|++... ...+.-++...+++++||||-
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence 345689999999999999999999887654331 111211111 234445788899999999991
Q ss_pred -------------------cccccccccCcCCCcEEEEEEECC-CcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714 82 -------------------EDYERLRPMSYPNTDCFLLCFSIG-STSSYENILSKWYPELKHHCPKVPIILVGTKADLR 140 (205)
Q Consensus 82 -------------------~~~~~~~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 140 (205)
++....+..++++..+..++|-+. ...++..+.-+++..+.+ -+.++-|.-|+|-.
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~---vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE---VVNVVPVIAKADTL 197 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh---hheeeeeEeecccc
Confidence 111222445666666655555432 223444433244444443 46678888899954
No 330
>KOG0468|consensus
Probab=98.93 E-value=4.5e-09 Score=86.33 Aligned_cols=117 Identities=22% Similarity=0.268 Sum_probs=83.9
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc---------ccccceeEE------------ECCEEEEEEEEE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---------FDNYPDTIT------------VDNKTYDVTLWD 77 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~---------~~~~~~~~~------------~~~~~~~~~i~D 77 (205)
.+....++.++|+-..|||+|+..+.....++....+. .......+. ..++.+-+++.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 44567789999999999999998888765543322211 111111111 246778899999
Q ss_pred cCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccc
Q psy15714 78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140 (205)
Q Consensus 78 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~ 140 (205)
+|||-+|-.-....++.+|++++|+|+.+.-++..- .+ +++.. ++.|+++|+||.|..
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE--r~---ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE--RI---IKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH--HH---HHHHHhccCcEEEEEehhHHH
Confidence 999999988877889999999999999887665542 22 22322 489999999999963
No 331
>PRK12289 GTPase RsgA; Reviewed
Probab=98.91 E-value=9.2e-09 Score=80.84 Aligned_cols=90 Identities=20% Similarity=0.176 Sum_probs=64.1
Q ss_pred ccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714 87 LRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 87 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (205)
+.+..+.++|.+++|+|+.++. ....+. .|+..+.. .++|+++|+||+||.... .. +.....
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~Ld-R~L~~a~~--~~ip~ILVlNK~DLv~~~------------~~--~~~~~~ 144 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLS-RFLVKAES--TGLEIVLCLNKADLVSPT------------EQ--QQWQDR 144 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEEchhcCChH------------HH--HHHHHH
Confidence 3445688999999999998775 333333 66665544 489999999999986432 11 112222
Q ss_pred HHHcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714 166 RRKIKAAEYLECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 166 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 194 (205)
...++.. ++.+||.++.|++++++.+..
T Consensus 145 ~~~~g~~-v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 145 LQQWGYQ-PLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred HHhcCCe-EEEEEcCCCCCHHHHhhhhcc
Confidence 3456665 899999999999999988764
No 332
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.91 E-value=8.9e-09 Score=85.44 Aligned_cols=118 Identities=13% Similarity=0.051 Sum_probs=72.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCccccccceeEEECCEEEEEEEEEcCCCcccc-------cc---c
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDY--VPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE-------RL---R 88 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~ 88 (205)
...++|+++|.+|+||||++|.+++....... .+.+..........++ ..+.++||||-.... .. .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 45689999999999999999999987532211 1111111112223455 568999999965421 11 1
Q ss_pred ccCc--CCCcEEEEEEECCCcchH-HHHHHHHHHHHhhhC-C--CCCEEEEeeCcccccC
Q psy15714 89 PMSY--PNTDCFLLCFSIGSTSSY-ENILSKWYPELKHHC-P--KVPIILVGTKADLRSE 142 (205)
Q Consensus 89 ~~~~--~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-~--~~p~ivv~nK~Dl~~~ 142 (205)
..++ ...|++++|..++..... ++. .++..+...+ . -..+|||.|+.|...+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~--~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDL--PLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHH--HHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 1122 257999999887644332 222 4555555444 1 3568999999998754
No 333
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.8e-08 Score=77.14 Aligned_cols=83 Identities=22% Similarity=0.199 Sum_probs=54.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEE------------C----CEEEEEEEEEcCCC----
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITV------------D----NKTYDVTLWDTAGQ---- 81 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~------------~----~~~~~~~i~D~~g~---- 81 (205)
.+++.++|.|++|||||+++++..... .+|+.++.+.-.-.+.+ . -....+.+.|++|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999987643 45555542221111111 1 13467889999983
Q ss_pred ccccccccc---CcCCCcEEEEEEECC
Q psy15714 82 EDYERLRPM---SYPNTDCFLLCFSIG 105 (205)
Q Consensus 82 ~~~~~~~~~---~~~~~~~~i~v~d~~ 105 (205)
.+-+.+-.. -++.+|+++-|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 223333222 367899999999866
No 334
>KOG0463|consensus
Probab=98.89 E-value=4.5e-09 Score=81.26 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=98.2
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCC------------------CCcCccccccc-----eeEE-------
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPT------------------DYVPTVFDNYP-----DTIT------- 65 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~------------------~~~~t~~~~~~-----~~~~------- 65 (205)
.....-.+.|++|+|+..+|||||+..+..+.... ...++.+.+.. -.+.
T Consensus 126 ~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg 205 (641)
T KOG0463|consen 126 PTEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG 205 (641)
T ss_pred CCCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence 34456688999999999999999997666544322 22222222110 0000
Q ss_pred --------ECCEEEEEEEEEcCCCcccccccccCc--CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEee
Q psy15714 66 --------VDNKTYDVTLWDTAGQEDYERLRPMSY--PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGT 135 (205)
Q Consensus 66 --------~~~~~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n 135 (205)
..+...-++++|++|+++|-.....-. +-.|...+++-++-. +.....+.+...... ++|+.+|.+
T Consensus 206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALaL--~VPVfvVVT 281 (641)
T KOG0463|consen 206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALAL--HVPVFVVVT 281 (641)
T ss_pred CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhhh--cCcEEEEEE
Confidence 012234578899999999977644333 336777777755432 223333444444444 899999999
Q ss_pred CcccccCchhhhhh-------hhhccccc-----cHHH----HHHHHHHcCCceEEEcccCCCCCHHHHH
Q psy15714 136 KADLRSENKTIDKK-------KAAEVDLV-----STSQ----GKKMRRKIKAAEYLECSAKLNEGLDQVF 189 (205)
Q Consensus 136 K~Dl~~~~~~~~~~-------~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 189 (205)
|+|....+...+.. +..+.+.+ +.++ +-++..+ ..+|+|.+|..+|+|++-+.
T Consensus 282 KIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Se-r~CPIFQvSNVtG~NL~LLk 350 (641)
T KOG0463|consen 282 KIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSE-RVCPIFQVSNVTGTNLPLLK 350 (641)
T ss_pred eeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccc-cccceEEeccccCCChHHHH
Confidence 99998776543322 11112221 1111 2223222 33459999999999986543
No 335
>KOG2655|consensus
Probab=98.87 E-value=6.9e-08 Score=75.03 Aligned_cols=125 Identities=21% Similarity=0.231 Sum_probs=75.5
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCC---------CcCcccccc-ceeEEECCEEEEEEEEEcCCCc---
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTD---------YVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE--- 82 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~---------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~--- 82 (205)
.+......+.++++|+.|.|||||+|.|+...+..+ ...+..... ...+.-+|..+.+++.||||-.
T Consensus 14 ~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 14 KSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred HHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 334455679999999999999999999887755432 111111111 2234446888999999999911
Q ss_pred ---------------ccc-------cccccCcCC--CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcc
Q psy15714 83 ---------------DYE-------RLRPMSYPN--TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138 (205)
Q Consensus 83 ---------------~~~-------~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 138 (205)
.|+ .+.+..+.. .++++|.+..+.. .+..+. +..+++.+..+.+|-|.-|+|
T Consensus 94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D---i~~Mk~l~~~vNiIPVI~KaD 169 (366)
T KOG2655|consen 94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD---IEFMKKLSKKVNLIPVIAKAD 169 (366)
T ss_pred cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh---HHHHHHHhccccccceeeccc
Confidence 111 112234454 4455555544322 233332 233445556789999999999
Q ss_pred cccCch
Q psy15714 139 LRSENK 144 (205)
Q Consensus 139 l~~~~~ 144 (205)
......
T Consensus 170 ~lT~~E 175 (366)
T KOG2655|consen 170 TLTKDE 175 (366)
T ss_pred cCCHHH
Confidence 876654
No 336
>PRK12288 GTPase RsgA; Reviewed
Probab=98.84 E-value=2.7e-08 Score=78.23 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=64.6
Q ss_pred cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714 92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA 171 (205)
Q Consensus 92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (205)
..++|.+++|++++...++..+. .|+...... ++|.++|+||+|+...... ...++........+.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ld-r~L~~a~~~--~i~~VIVlNK~DL~~~~~~-----------~~~~~~~~~y~~~g~ 183 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIID-RYLVACETL--GIEPLIVLNKIDLLDDEGR-----------AFVNEQLDIYRNIGY 183 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHH-HHHHHHHhc--CCCEEEEEECccCCCcHHH-----------HHHHHHHHHHHhCCC
Confidence 56799999999998778888776 787666544 7999999999999754210 011222223344565
Q ss_pred ceEEEcccCCCCCHHHHHHHHHH
Q psy15714 172 AEYLECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 172 ~~~~~~Sa~~~~~i~~~~~~i~~ 194 (205)
. ++++||++++|++++++.+..
T Consensus 184 ~-v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 184 R-VLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred e-EEEEeCCCCcCHHHHHHHHhh
Confidence 4 999999999999999998864
No 337
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=5.4e-08 Score=73.04 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=100.3
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcC---CC---CCCCc-----Ccc---cccc---ceeEEECCEEEEEEEEEcCCC
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTEN---KF---PTDYV-----PTV---FDNY---PDTITVDNKTYDVTLWDTAGQ 81 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~---~~---~~~~~-----~t~---~~~~---~~~~~~~~~~~~~~i~D~~g~ 81 (205)
..+.-++|..+|.-+-|||||..++..- +. ...|. |.. +... ...+...+. .+.-.|+|||
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~r--hyahVDcPGH 85 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANR--HYAHVDCPGH 85 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCc--eEEeccCCCh
Confidence 3456689999999999999998766531 10 01111 111 1111 112222333 3555699999
Q ss_pred cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHH
Q psy15714 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTS 160 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (205)
..|-.....-..+.|+.|+|++++|...-+.. +.+-..++. .+| +++++||+|+.++.... .+-..
T Consensus 86 aDYvKNMItgAaqmDgAILVVsA~dGpmPqTr--EHiLlarqv--Gvp~ivvflnK~Dmvdd~ell---------elVem 152 (394)
T COG0050 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQV--GVPYIVVFLNKVDMVDDEELL---------ELVEM 152 (394)
T ss_pred HHHHHHHhhhHHhcCccEEEEEcCCCCCCcch--hhhhhhhhc--CCcEEEEEEecccccCcHHHH---------HHHHH
Confidence 99988777778889999999999986543332 122222233 675 56899999999865332 23455
Q ss_pred HHHHHHHHcCCc----eEEEcccCCC-CC-------HHHHHHHHHHHH
Q psy15714 161 QGKKMRRKIKAA----EYLECSAKLN-EG-------LDQVFIAAVRSA 196 (205)
Q Consensus 161 ~~~~~~~~~~~~----~~~~~Sa~~~-~~-------i~~~~~~i~~~~ 196 (205)
+.+++...++.. |++.-||... +| |.+|.+.+-+.+
T Consensus 153 EvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 153 EVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred HHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 778888888653 5777777653 22 455555554443
No 338
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.82 E-value=4.5e-08 Score=75.95 Aligned_cols=170 Identities=19% Similarity=0.147 Sum_probs=103.9
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc----------ccccce-----eEEEC----------------
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV----------FDNYPD-----TITVD---------------- 67 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~----------~~~~~~-----~~~~~---------------- 67 (205)
.....+.+.+.|..+.|||||+..+..+...+..-.+. ....+. .+-++
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 35567899999999999999998888766543211110 000000 11111
Q ss_pred -----CEEEEEEEEEcCCCcccccc--cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714 68 -----NKTYDVTLWDTAGQEDYERL--RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR 140 (205)
Q Consensus 68 -----~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 140 (205)
....-+.+.|+.||+.|-.+ +-.+-+..|..++++.+++.-+.-. .+.+..+... ..|++++.||+|+.
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~a~--~lPviVvvTK~D~~ 268 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIALAM--ELPVIVVVTKIDMV 268 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhhhh--cCCEEEEEEecccC
Confidence 11234677899999998654 3334567899999999988755333 3566666655 89999999999997
Q ss_pred cCchhhhhh-------hhhc-cc--cccHH----HHHHHHHHcCCceEEEcccCCCCCHHHHHHHH
Q psy15714 141 SENKTIDKK-------KAAE-VD--LVSTS----QGKKMRRKIKAAEYLECSAKLNEGLDQVFIAA 192 (205)
Q Consensus 141 ~~~~~~~~~-------~~~~-~~--~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 192 (205)
.+....... +... .. .-+.. .+.......+..|++.+|+.+|+|++-+.+.+
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 664432211 1100 00 00111 23333333457789999999999986544433
No 339
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.78 E-value=3.6e-08 Score=69.14 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=59.5
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
.+..+|++++|.|+.++..-.+ ..+...+.....+.|+++|+||+|+.... . .......+.+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~------------~-~~~~~~~~~~~~~ 69 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTW------------V-TARWVKILSKEYP 69 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHH------------H-HHHHHHHHhcCCc
Confidence 4678999999999988743211 13444444333469999999999996432 1 1122333333222
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
.. .+.+||+.+.|++++.+.+.+.+
T Consensus 70 ~~-~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 70 TI-AFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EE-EEEeeccccccHHHHHHHHHHHH
Confidence 22 57899999999999999987654
No 340
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.77 E-value=2.2e-08 Score=68.93 Aligned_cols=53 Identities=26% Similarity=0.207 Sum_probs=37.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccc-ccceeEEECCEEEEEEEEEcCCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFD-NYPDTITVDNKTYDVTLWDTAGQ 81 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~ 81 (205)
+++++|.+|+|||||+|++.+...... ....+. .....+.+++ .+.||||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 899999999999999999998776421 122222 2223444444 5799999994
No 341
>KOG2486|consensus
Probab=98.73 E-value=1e-08 Score=76.26 Aligned_cols=165 Identities=17% Similarity=0.093 Sum_probs=91.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-ccccccceeEEECCEEEEEEEEEcCC----------Cccccccc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVP-TVFDNYPDTITVDNKTYDVTLWDTAG----------QEDYERLR 88 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 88 (205)
..+..+++++|-.++|||+|++.++..+....... ..+.. ..+..-.....+.+.|.|| ...+....
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T--q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT--QAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc--eeeeeeeccceEEEEecCCcccccCCccCcchHhHhH
Confidence 45678999999999999999999887765433222 22222 2222222224577789999 12222222
Q ss_pred ccCcCCC---cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHH-HHH
Q psy15714 89 PMSYPNT---DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ-GKK 164 (205)
Q Consensus 89 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~ 164 (205)
..++.+. --+.+++|++-+-.-.+. ..+..+.+. ++|+.+|.||+|....-..-... ...+..+ .+.
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kK-----p~~~i~~~f~~ 281 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKK-----PGLNIKINFQG 281 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhccccccC-----ccccceeehhh
Confidence 2333222 224445565543222221 233445555 99999999999986543210000 0011111 111
Q ss_pred HHHHc--CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 165 MRRKI--KAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 165 ~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
+.... ...|++.+|+.++.|+++++-.+.+.
T Consensus 282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccccceeccCCceeeecccccCceeeeeehhhh
Confidence 21111 22347789999999999998777654
No 342
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.66 E-value=1.6e-07 Score=65.76 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=54.6
Q ss_pred cEEEEEEECCCcchHHHHHHHHHH--HHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYP--ELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~--~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
|++++|+|+.++.+... .++. .+.. .++|+++|+||+|+.... .+ .+....+....+ ..
T Consensus 1 Dvvl~VvD~~~p~~~~~---~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~------------~~-~~~~~~~~~~~~-~~ 61 (155)
T cd01849 1 DVILEVLDARDPLGTRS---PDIERVLIKE--KGKKLILVLNKADLVPKE------------VL-RKWLAYLRHSYP-TI 61 (155)
T ss_pred CEEEEEEeccCCccccC---HHHHHHHHhc--CCCCEEEEEechhcCCHH------------HH-HHHHHHHHhhCC-ce
Confidence 78999999988765443 2322 2222 389999999999985431 10 111122322223 34
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
++.+||+++.|++++++.+.+..
T Consensus 62 ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 62 PFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EEEEeccCCcChhhHHHHHHHHh
Confidence 78999999999999999987754
No 343
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.65 E-value=9.7e-07 Score=60.76 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=66.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcC-CCcc--------------c-
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTA-GQED--------------Y- 84 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~-g~~~--------------~- 84 (205)
...+||+|.|+||+||||++.++.+.--... -..+..+...+.-+|+.+-|.|.|+. |... |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 4568999999999999999977664322111 22344455667778888888998987 4211 1
Q ss_pred ------c----cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCccc
Q psy15714 85 ------E----RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139 (205)
Q Consensus 85 ------~----~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl 139 (205)
. ...+..++.+|++|+ |=--+-.+.. ..+...+.... .+.|++..+.+.+.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks--~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVIII--DEIGPMELKS--KKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhcc--HHHHHHHHHHhcCCCcEEEEEecccC
Confidence 0 011223445666554 3222222222 24445555444 57888888877653
No 344
>KOG0410|consensus
Probab=98.65 E-value=4.7e-08 Score=74.28 Aligned_cols=150 Identities=20% Similarity=0.216 Sum_probs=91.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEE-CCEEEEEEEEEcCCCc---------ccccccc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITV-DNKTYDVTLWDTAGQE---------DYERLRP 89 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~---------~~~~~~~ 89 (205)
....-|.|+|-.++|||||++++++....+ +....+-+.-...... .|. .+.+.||-|-. .|+....
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~--~vlltDTvGFisdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN--FVLLTDTVGFISDLPIQLVAAFQATLE 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc--EEEEeechhhhhhCcHHHHHHHHHHHH
Confidence 344568999999999999999999544322 1111111111122222 233 35556998832 2344333
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCC----EEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVP----IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK 164 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (205)
....+|+++=|.|+++|..-... ...+..++... +..| ++=|-||+|....... .
T Consensus 254 -eVaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-------------~----- 313 (410)
T KOG0410|consen 254 -EVAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-------------E----- 313 (410)
T ss_pred -HHhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-------------c-----
Confidence 35679999999999998744443 36677777763 2333 4556777776554211 1
Q ss_pred HHHHcCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 165 MRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 165 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
...+ .+.+||.+|+|++++...+-....
T Consensus 314 --E~n~---~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 --EKNL---DVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred --ccCC---ccccccccCccHHHHHHHHHHHhh
Confidence 1111 477999999999999987766543
No 345
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.63 E-value=2e-06 Score=68.12 Aligned_cols=155 Identities=16% Similarity=0.189 Sum_probs=97.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC-----------------CCC----CCcCccccccc----eeEEE-CCEEEEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENK-----------------FPT----DYVPTVFDNYP----DTITV-DNKTYDVTL 75 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~-----------------~~~----~~~~t~~~~~~----~~~~~-~~~~~~~~i 75 (205)
..+=|.|+|+..+||||||+||..-- .++ .+..|+..-+. ..+.+ ++..+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 34678999999999999999998532 111 22223333331 23333 577899999
Q ss_pred EEcCC--------C---cccccc------------------cccCcCC--CcEEEEEEECC----CcchHHHHHHHHHHH
Q psy15714 76 WDTAG--------Q---EDYERL------------------RPMSYPN--TDCFLLCFSIG----STSSYENILSKWYPE 120 (205)
Q Consensus 76 ~D~~g--------~---~~~~~~------------------~~~~~~~--~~~~i~v~d~~----~~~s~~~~~~~~~~~ 120 (205)
.|+-| + +.-|.. .+-.++. .=++|+.-|.+ .++.+.++.+..+..
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 99988 0 000100 1112222 23445554543 457888888888999
Q ss_pred HhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC--CCCHHHHHHHHH
Q psy15714 121 LKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL--NEGLDQVFIAAV 193 (205)
Q Consensus 121 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~ 193 (205)
|+.. +.|++|++|-.+-.. .-+.+.+.++...++.. ++.+++.. .+.|..+++.++
T Consensus 176 Lk~i--gKPFvillNs~~P~s--------------~et~~L~~eL~ekY~vp-Vlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 176 LKEI--GKPFVILLNSTKPYS--------------EETQELAEELEEKYDVP-VLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHHh--CCCEEEEEeCCCCCC--------------HHHHHHHHHHHHHhCCc-EEEeehHHcCHHHHHHHHHHHH
Confidence 9988 999999999887433 34556677777777777 76666653 345555555544
No 346
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=7.4e-07 Score=72.63 Aligned_cols=116 Identities=20% Similarity=0.182 Sum_probs=77.4
Q ss_pred ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
......++-++|+|+||+|||||++.+...-... |+.......-.+.|+.-.+++..+|.. ...+ .....-+|
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~m-iDvaKIaD 135 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEIRGPITVVSGKTRRITFLECPSD--LHQM-IDVAKIAD 135 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHh----hhhccCCceEEeecceeEEEEEeChHH--HHHH-HhHHHhhh
Confidence 3456678899999999999999998776543211 111111112235678888999999932 3333 23567799
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCc
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSEN 143 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 143 (205)
++++++|..-.-..+.+ +++.++..+ +.| ++-|+|..|+....
T Consensus 136 LVlLlIdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 136 LVLLLIDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred eeEEEeccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccCh
Confidence 99999998655444444 566666665 555 55789999998764
No 347
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.57 E-value=1.9e-07 Score=66.31 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=36.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAG 80 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g 80 (205)
...++++++|.|++|||||+|++.+.+.... .+..+... ...+..+. .+.++|+||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 3458999999999999999999998764221 12222222 12233322 478899998
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.57 E-value=1.7e-07 Score=65.75 Aligned_cols=55 Identities=25% Similarity=0.270 Sum_probs=34.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAG 80 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g 80 (205)
..++|+++|.+|+|||||+|++.+...... .++.+.... ..+..++ .+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 467899999999999999999998654211 111222211 1222222 367889998
No 349
>PRK13796 GTPase YqeH; Provisional
Probab=98.57 E-value=3.8e-07 Score=72.49 Aligned_cols=94 Identities=21% Similarity=0.300 Sum_probs=63.7
Q ss_pred ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHH--
Q psy15714 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS-- 160 (205)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-- 160 (205)
.|.......-...+.+++|+|+.|... .|...+.+...+.|+++|+||+|+... ....+
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~-------------~~~~~~i 118 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPK-------------SVKKNKV 118 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCC-------------ccCHHHH
Confidence 455544434334459999999877531 355555555557899999999999653 22222
Q ss_pred --HHHHHHHHcCCc--eEEEcccCCCCCHHHHHHHHHHH
Q psy15714 161 --QGKKMRRKIKAA--EYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 161 --~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
....+++..+.. .++.+||++++|++++++.+.+.
T Consensus 119 ~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 119 KNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 333445555552 47999999999999999998764
No 350
>KOG1491|consensus
Probab=98.55 E-value=9e-07 Score=67.80 Aligned_cols=87 Identities=21% Similarity=0.166 Sum_probs=55.6
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEEC---------------CEEEEEEEEEcCCCc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVD---------------NKTYDVTLWDTAGQE 82 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~---------------~~~~~~~i~D~~g~~ 82 (205)
.....+++.++|.|++|||||+|++++.... .+++.++.+...-.+.+. -....++++|++|--
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 4457789999999999999999999987653 344444433222222222 235679999999832
Q ss_pred c----cccc---cccCcCCCcEEEEEEECC
Q psy15714 83 D----YERL---RPMSYPNTDCFLLCFSIG 105 (205)
Q Consensus 83 ~----~~~~---~~~~~~~~~~~i~v~d~~ 105 (205)
+ -+.+ +=.-++.+|+++=|+++.
T Consensus 96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 2 1122 122356788887777643
No 351
>KOG1954|consensus
Probab=98.53 E-value=5.3e-07 Score=69.85 Aligned_cols=117 Identities=20% Similarity=0.158 Sum_probs=73.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccce-eEE-------ECC---------------------------
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TIT-------VDN--------------------------- 68 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~-------~~~--------------------------- 68 (205)
.=|+++|.-..||||+|+.++...++........+.-.. .+. ++|
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 458999999999999999999988864332222111111 111 111
Q ss_pred ------EEEEEEEEEcCCCcc-----------cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEE
Q psy15714 69 ------KTYDVTLWDTAGQED-----------YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPII 131 (205)
Q Consensus 69 ------~~~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i 131 (205)
.--+++|.|+||--. |....+-|...+|.++++||+-...--.+.. ..+..++.+ .-.+=
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~-~vi~aLkG~--EdkiR 215 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFK-RVIDALKGH--EDKIR 215 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHH-HHHHHhhCC--cceeE
Confidence 012478899999322 2223334578899999999976544333333 455555544 55567
Q ss_pred EEeeCcccccCc
Q psy15714 132 LVGTKADLRSEN 143 (205)
Q Consensus 132 vv~nK~Dl~~~~ 143 (205)
||+||.|..+..
T Consensus 216 VVLNKADqVdtq 227 (532)
T KOG1954|consen 216 VVLNKADQVDTQ 227 (532)
T ss_pred EEeccccccCHH
Confidence 899999966554
No 352
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.51 E-value=3.5e-07 Score=64.00 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=38.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccccee-EEECCEEEEEEEEEcCC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITVDNKTYDVTLWDTAG 80 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~D~~g 80 (205)
...+++++|.+++|||||++++.+... ..+.++.+...... +..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457899999999999999999997553 33344444433222 22222 589999998
No 353
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.51 E-value=3.8e-07 Score=62.74 Aligned_cols=77 Identities=17% Similarity=0.063 Sum_probs=50.5
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
.+..+|++++|+|+.++.+..+. .+...+.....+.|+++|+||+|+.... . ..+.....+..+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~--~~~~~~~~~~~~ 71 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPP--DLERYVKEVDPRKKNILLLNKADLLTEE------------Q--RKAWAEYFKKEG 71 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCH--HHHHHHHhccCCCcEEEEEechhcCCHH------------H--HHHHHHHHHhcC
Confidence 57889999999999887654421 2333333333579999999999986432 1 122333444445
Q ss_pred CceEEEcccCCCCC
Q psy15714 171 AAEYLECSAKLNEG 184 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~ 184 (205)
.. ++.+||.++.+
T Consensus 72 ~~-ii~iSa~~~~~ 84 (141)
T cd01857 72 IV-VVFFSALKENA 84 (141)
T ss_pred Ce-EEEEEecCCCc
Confidence 44 89999998764
No 354
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.50 E-value=3.2e-07 Score=65.28 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=38.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~ 81 (205)
...++++++|.+++|||||++++.+..+.. .....++.. ...+.++ ..+.+|||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 345799999999999999999999877532 122222222 2223333 35789999994
No 355
>KOG0448|consensus
Probab=98.47 E-value=1.1e-06 Score=72.74 Aligned_cols=121 Identities=15% Similarity=0.267 Sum_probs=75.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccce-------------------------------------
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD------------------------------------- 62 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~------------------------------------- 62 (205)
.....||++.|...+||||++|+++..++-+.....+...+..
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 3466899999999999999999999765533222111111100
Q ss_pred -------eEEECCE-----EEEEEEEEcCCCc---ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCC
Q psy15714 63 -------TITVDNK-----TYDVTLWDTAGQE---DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK 127 (205)
Q Consensus 63 -------~~~~~~~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 127 (205)
.+..+.. .-.+.+.|.||-+ ...+-...++..+|++|||.++.+.-+..+- .++....+. .
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--K 261 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--K 261 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--C
Confidence 0000011 0136678899854 3344455678899999999998876554443 444444443 5
Q ss_pred CCEEEEeeCcccccCch
Q psy15714 128 VPIILVGTKADLRSENK 144 (205)
Q Consensus 128 ~p~ivv~nK~Dl~~~~~ 144 (205)
..+.|+.||.|.....+
T Consensus 262 pniFIlnnkwDasase~ 278 (749)
T KOG0448|consen 262 PNIFILNNKWDASASEP 278 (749)
T ss_pred CcEEEEechhhhhcccH
Confidence 55678888889876543
No 356
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.47 E-value=5.2e-07 Score=69.11 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=38.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~ 81 (205)
...++++++|.||+|||||+|++.+.+.... ....+... ...+.++. .+.++||||-
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 3568999999999999999999997664221 11112221 22333332 4789999996
No 357
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.47 E-value=8.1e-07 Score=63.17 Aligned_cols=88 Identities=19% Similarity=0.051 Sum_probs=58.5
Q ss_pred cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714 88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR 167 (205)
Q Consensus 88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (205)
....+.++|++++|+|+.++....+. .+... ..+.|+++|+||+|+.... .. ....+..+
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~----~~~k~~ilVlNK~Dl~~~~------------~~--~~~~~~~~ 72 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP--LLEKI----LGNKPRIIVLNKADLADPK------------KT--KKWLKYFE 72 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh--hhHhH----hcCCCEEEEEehhhcCChH------------HH--HHHHHHHH
Confidence 34578899999999999876543221 22222 2368999999999985421 11 11111222
Q ss_pred HcCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 168 KIKAAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
... ..++.+||++++|++++.+.+...+
T Consensus 73 ~~~-~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 73 SKG-EKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred hcC-CeEEEEECCCcccHHHHHHHHHHHH
Confidence 222 3378999999999999999998875
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.46 E-value=4.5e-07 Score=69.45 Aligned_cols=101 Identities=19% Similarity=0.104 Sum_probs=65.1
Q ss_pred cCCCcc-cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhcccc
Q psy15714 78 TAGQED-YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDL 156 (205)
Q Consensus 78 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 156 (205)
+|||.. ........+..+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+.. .
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~------------~ 65 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPA------------V 65 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHH------------H
Confidence 466643 222344578899999999999876543331 222222 368999999999986421 1
Q ss_pred ccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 157 VSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
.......+ +..+. +++.+||.++.|++++.+.+.+.+...
T Consensus 66 -~~~~~~~~-~~~~~-~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 66 -TKQWLKYF-EEKGI-KALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred -HHHHHHHH-HHcCC-eEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 11111222 22333 379999999999999999888776543
No 359
>KOG0085|consensus
Probab=98.46 E-value=2.3e-07 Score=67.52 Aligned_cols=129 Identities=16% Similarity=0.119 Sum_probs=76.1
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc----------chHHHHHHHHHHHHhhh--CCCCCEEEEeeCc
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST----------SSYENILSKWYPELKHH--CPKVPIILVGTKA 137 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 137 (205)
++.+.+.|.+|+..-+..|.+.+++.-.++|++..+.. ...++.. .+...+-.+ +.+.++|+++||.
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESk-ALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESK-ALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHH-HHHHHHhccccccCCceEEEechh
Confidence 34466778888777777777777777666666554421 2222222 222222222 2689999999999
Q ss_pred ccccCchh----hhhhhhhccccccHHHHHHHHHHc---------CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 138 DLRSENKT----IDKKKAAEVDLVSTSQGKKMRRKI---------KAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 138 Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
|+...... ..-....+..+.+.+.++++.-.. .+..-..++|.+.+||.-+|..+...++.-
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 98765322 222222233344555555554332 112134578899999999999988887653
No 360
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.42 E-value=2.8e-06 Score=68.30 Aligned_cols=126 Identities=16% Similarity=0.113 Sum_probs=81.0
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc----------chHHHHHHHHHHHHhhhC-CCCCEEEEeeCccc
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST----------SSYENILSKWYPELKHHC-PKVPIILVGTKADL 139 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl 139 (205)
..+.++|.||+...+..|..++.+++++|||+++++- ..+.+....|-..+.... .+.|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 3568999999999999999999999999999998743 234444434444444433 68999999999998
Q ss_pred ccCchhhh-----hh-hhhccccccHHHHHHHHHHc-----------CCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 140 RSENKTID-----KK-KAAEVDLVSTSQGKKMRRKI-----------KAAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 140 ~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
....-... .. +..+...-+.+.+..+.... ....+..++|.+..++..+|..+.+.+
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 54321111 11 11111012334444443331 112356899999999999999887654
No 361
>KOG0460|consensus
Probab=98.41 E-value=2.1e-06 Score=65.86 Aligned_cols=152 Identities=16% Similarity=0.109 Sum_probs=93.3
Q ss_pred ccccceeeEEEEECCCCCCHHHHHHHHhc----CCCCC--CCcCcc--ccccceeEEEC-------CEEEEEEEEEcCCC
Q psy15714 17 SKSVHKALKVTTVGDGMVGKTCLLITHTE----NKFPT--DYVPTV--FDNYPDTITVD-------NKTYDVTLWDTAGQ 81 (205)
Q Consensus 17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~----~~~~~--~~~~t~--~~~~~~~~~~~-------~~~~~~~i~D~~g~ 81 (205)
....+..++|.-+|...-|||||-.++.. ..... .|.... ....-.-++++ -..-.+.=.|+|||
T Consensus 48 f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH 127 (449)
T KOG0460|consen 48 FVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGH 127 (449)
T ss_pred cccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCch
Confidence 34667789999999999999999866652 11100 000000 00000112221 11122344599999
Q ss_pred cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ 161 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (205)
.+|-.....-..+.|+.|+|+.++|...-+.- +.+- +.+...-..++|++||.|+.++.... .+-+-+
T Consensus 128 ADYIKNMItGaaqMDGaILVVaatDG~MPQTr--EHlL-LArQVGV~~ivvfiNKvD~V~d~e~l---------eLVEmE 195 (449)
T KOG0460|consen 128 ADYIKNMITGAAQMDGAILVVAATDGPMPQTR--EHLL-LARQVGVKHIVVFINKVDLVDDPEML---------ELVEME 195 (449)
T ss_pred HHHHHHhhcCccccCceEEEEEcCCCCCcchH--HHHH-HHHHcCCceEEEEEecccccCCHHHH---------HHHHHH
Confidence 99988888888899999999999997644442 2222 22222234578999999998654322 334556
Q ss_pred HHHHHHHcCC----ceEEEcccC
Q psy15714 162 GKKMRRKIKA----AEYLECSAK 180 (205)
Q Consensus 162 ~~~~~~~~~~----~~~~~~Sa~ 180 (205)
.+++...++. .|++.-||.
T Consensus 196 ~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 196 IRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHHHHcCCCCCCCCeeecchh
Confidence 7888888754 457776665
No 362
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.39 E-value=1e-06 Score=67.92 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=38.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~ 81 (205)
...++++++|.|++|||||+|++.+.+.... .+..+... ...+..++ .+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 3568999999999999999999998764221 12222222 12233332 4789999996
No 363
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.37 E-value=8.2e-06 Score=73.94 Aligned_cols=114 Identities=24% Similarity=0.175 Sum_probs=64.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC----cCc--cccccceeEEECCEEEEEEEEEcCCCcc--------cccccc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDY----VPT--VFDNYPDTITVDNKTYDVTLWDTAGQED--------YERLRP 89 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~ 89 (205)
.=.+|+|++|+||||++++. +-.++-.. ..+ .+......-++.+ +-.++|++|..- ....|.
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHH
Confidence 34799999999999999765 33332110 001 1111111223333 355889999321 111122
Q ss_pred c---------CcCCCcEEEEEEECCCcc-----hH----HHHHHHHHHHHhh-hCCCCCEEEEeeCcccccC
Q psy15714 90 M---------SYPNTDCFLLCFSIGSTS-----SY----ENILSKWYPELKH-HCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 90 ~---------~~~~~~~~i~v~d~~~~~-----s~----~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~ 142 (205)
. .-+..|+||+++|+.+.- .. ..+. ..+..+.. ..-.+||.|++||+|+...
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR-~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIR-QRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 2 235689999999987542 11 2222 23333333 3368999999999998754
No 364
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.37 E-value=6.7e-07 Score=64.70 Aligned_cols=55 Identities=25% Similarity=0.245 Sum_probs=34.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-------CCcCcccccc-ceeEEECCEEEEEEEEEcCC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPT-------DYVPTVFDNY-PDTITVDNKTYDVTLWDTAG 80 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~-------~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g 80 (205)
..+++++|.+|+|||||+|++.+..... ......++.. ...+.++. .+.|+||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 3589999999999999999999754311 1111112222 22333332 478999998
No 365
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.36 E-value=1.5e-06 Score=68.39 Aligned_cols=82 Identities=17% Similarity=0.038 Sum_probs=55.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-C-CCCcCccccccceeEEECCE---------------EEEEEEEEcCCCccc--
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKF-P-TDYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQEDY-- 84 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~-- 84 (205)
+++.++|.|++|||||++++++... . .+|+.++.......+.+.+. ...+.+.|+||-..-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999998765 3 34455533333333333331 235788899995332
Q ss_pred --cc---ccccCcCCCcEEEEEEECC
Q psy15714 85 --ER---LRPMSYPNTDCFLLCFSIG 105 (205)
Q Consensus 85 --~~---~~~~~~~~~~~~i~v~d~~ 105 (205)
.. .+-..++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 11 1223478899999999974
No 366
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.32 E-value=1.8e-06 Score=60.39 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=36.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAG 80 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g 80 (205)
....+++++|.+++|||||+|++.+..... ....++.. ...+..+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~--~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS--QQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc--eEEEEec---CCEEEEECCC
Confidence 456889999999999999999999865321 11122111 1222332 2478889998
No 367
>KOG0447|consensus
Probab=98.30 E-value=2.8e-05 Score=63.45 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=43.7
Q ss_pred EEEEEEcCCCc-------------ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcc
Q psy15714 72 DVTLWDTAGQE-------------DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138 (205)
Q Consensus 72 ~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 138 (205)
.+.+.|+||-. ....+...+..+.+++|+|+--.+-..-......+...+.- .+...|+|++|.|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP--~GrRTIfVLTKVD 490 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDP--HGRRTIFVLTKVD 490 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCC--CCCeeEEEEeecc
Confidence 46678999922 22334557889999999998533332222222233333322 3788999999999
Q ss_pred cccCc
Q psy15714 139 LRSEN 143 (205)
Q Consensus 139 l~~~~ 143 (205)
+...+
T Consensus 491 lAEkn 495 (980)
T KOG0447|consen 491 LAEKN 495 (980)
T ss_pred hhhhc
Confidence 98765
No 368
>PRK01889 GTPase RsgA; Reviewed
Probab=98.27 E-value=5.5e-06 Score=65.70 Aligned_cols=85 Identities=20% Similarity=0.150 Sum_probs=57.4
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
.+.++|.+++|.++...-....+. .++..+... ++|.+||+||+||.+.. ....++...+ ..+
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ld-r~L~~a~~~--~i~piIVLNK~DL~~~~------------~~~~~~~~~~--~~g 171 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIE-RYLALAWES--GAEPVIVLTKADLCEDA------------EEKIAEVEAL--APG 171 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHH-HHHHHHHHc--CCCEEEEEEChhcCCCH------------HHHHHHHHHh--CCC
Confidence 368899999999986433333333 555555555 88999999999997531 1011122222 234
Q ss_pred CceEEEcccCCCCCHHHHHHHHH
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAV 193 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~ 193 (205)
.. ++.+|++++.|++++..++.
T Consensus 172 ~~-Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 172 VP-VLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred Cc-EEEEECCCCccHHHHHHHhh
Confidence 44 89999999999999988874
No 369
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.26 E-value=5e-06 Score=58.31 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=37.6
Q ss_pred EEEEEEEEcCCCcccccccc--------cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccc
Q psy15714 70 TYDVTLWDTAGQEDYERLRP--------MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL 139 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 139 (205)
.....+.|++|-..-..... ...-..+.+++++|+.+......-...+...++.. =+|++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-----d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-----DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-----CEEEEecccC
Confidence 45678889999643222211 12334788999999765433221122344444433 2679999996
No 370
>KOG1534|consensus
Probab=98.26 E-value=7e-06 Score=59.05 Aligned_cols=125 Identities=17% Similarity=0.151 Sum_probs=65.8
Q ss_pred EEEEEEcCCCcccccc---cccC---cCC---CcEEEEEEECCCc-chHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccc
Q psy15714 72 DVTLWDTAGQEDYERL---RPMS---YPN---TDCFLLCFSIGST-SSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140 (205)
Q Consensus 72 ~~~i~D~~g~~~~~~~---~~~~---~~~---~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~ 140 (205)
.+.|+|+|||.+.... .+.. +.. .-.++|+.|..=- .+.+.+. -.+..+.... -.+|-|=|++|+||.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiS-G~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFIS-GCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHH-HHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 4788999998763221 1111 111 2235555553211 1111111 1222222222 489999999999998
Q ss_pred cCchhhhhhhhhccccc-----------c------HHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 141 SENKTIDKKKAAEVDLV-----------S------TSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 141 ~~~~~~~~~~~~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
......+..+++..... + ....-.+...++...+++....+.++|+.++..|-.++.
T Consensus 178 k~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 178 KDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred hhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 77433332222111111 0 001223334457777888888888899888887766554
No 371
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.26 E-value=2.3e-06 Score=66.87 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=38.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQ 81 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~ 81 (205)
....++.|+|-|++|||||||++.+..... ..+..+.... ..+..+. .+.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCC---CeEEecCCCc
Confidence 455889999999999999999999887621 1222233332 2333333 2889999994
No 372
>KOG0465|consensus
Probab=98.24 E-value=8.3e-06 Score=67.03 Aligned_cols=120 Identities=16% Similarity=0.118 Sum_probs=79.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCC----CCcCccc----------ccc-ceeEEECCEEEEEEEEEcCCCcc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPT----DYVPTVF----------DNY-PDTITVDNKTYDVTLWDTAGQED 83 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~----~~~~t~~----------~~~-~~~~~~~~~~~~~~i~D~~g~~~ 83 (205)
.+.-+|.+.-.-.+||||+-.+.+.. .... ....++- ... +-...+....+.+.|+|||||-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 35557888888999999998765521 1100 0001110 000 00111233467899999999999
Q ss_pred cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 144 (205)
|.---.+.++-.|++|+++++...-.-+... -| ..+.++ ++|.+.+.||+|.....+
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~t-V~-rQ~~ry--~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTET-VW-RQMKRY--NVPRICFINKMDRMGASP 173 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHH-HH-HHHHhc--CCCeEEEEehhhhcCCCh
Confidence 9888788899999999999987765444432 34 445666 899999999999765543
No 373
>KOG3859|consensus
Probab=98.23 E-value=3.2e-06 Score=63.21 Aligned_cols=124 Identities=24% Similarity=0.286 Sum_probs=76.8
Q ss_pred ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-----eeEEECCEEEEEEEEEcCCC-------ccc
Q psy15714 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-----DTITVDNKTYDVTLWDTAGQ-------EDY 84 (205)
Q Consensus 17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-----~~~~~~~~~~~~~i~D~~g~-------~~~ 84 (205)
+....-.++|+.+|..|.|||||+..+++.+|.....+.....+. ....-.+...+++|.|+.|- +.|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Sy 115 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSY 115 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccccc
Confidence 345678899999999999999999999999886654544433331 22333567789999999981 112
Q ss_pred cccc------------------c--cCcCCCcEEEEEEECC-CcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 85 ERLR------------------P--MSYPNTDCFLLCFSIG-STSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 85 ~~~~------------------~--~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
..+. + ..+....+.+.+|-++ ...++..+.- -.++.....+.+|-++-|.|-....
T Consensus 116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDL---vtmk~LdskVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDL---VTMKKLDSKVNIIPVIAKADTISKE 192 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHH---HHHHHHhhhhhhHHHHHHhhhhhHH
Confidence 1110 0 1245555555555443 2345555432 2233333467788888899965443
No 374
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.20 E-value=8.6e-06 Score=62.79 Aligned_cols=102 Identities=18% Similarity=0.116 Sum_probs=65.5
Q ss_pred EcCCCcc-cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccc
Q psy15714 77 DTAGQED-YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVD 155 (205)
Q Consensus 77 D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 155 (205)
-+|||.. -.......+..+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+..
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~----~~kp~iiVlNK~DL~~~~------------ 67 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP--MIDKII----GNKPRLLILNKSDLADPE------------ 67 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh----CCCCEEEEEEchhcCCHH------------
Confidence 4677653 222234578899999999999876543331 222222 278999999999985421
Q ss_pred cccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 156 LVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
. .......+ +..+. +++.+||+++.|++++.+.+.+.+...
T Consensus 68 ~-~~~~~~~~-~~~~~-~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 68 V-TKKWIEYF-EEQGI-KALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred H-HHHHHHHH-HHcCC-eEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 1 11111112 22233 378999999999999999888776543
No 375
>KOG0464|consensus
Probab=98.14 E-value=3e-06 Score=66.82 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=84.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc--------CCCCCCCcCcc--------cccc-ceeEEECCEEEEEEEEEcCCCccc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE--------NKFPTDYVPTV--------FDNY-PDTITVDNKTYDVTLWDTAGQEDY 84 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~--------~~~~~~~~~t~--------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 84 (205)
+--+|.++..-.+||||.-.++.. +.......-|. +... +-.+.++.+...+.++|+||+-.|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 445789999999999999877652 12211111111 1111 223456677788999999999999
Q ss_pred ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
+.-..+.++-.|++|.|||.+..-..+.+. .|... .+ .++|-..++||+|....+
T Consensus 116 ~leverclrvldgavav~dasagve~qtlt-vwrqa-dk--~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLT-VWRQA-DK--FKIPAHCFINKMDKLAAN 170 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceee-eehhc-cc--cCCchhhhhhhhhhhhhh
Confidence 988888999999999999998776666664 56332 23 389999999999987654
No 376
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.13 E-value=3e-06 Score=59.15 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
-.++++|+.|||||||+|.+.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999999863
No 377
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.11 E-value=9.1e-06 Score=63.36 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=53.5
Q ss_pred EEEEEEEEcCCCcccccc--------c----ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCc
Q psy15714 70 TYDVTLWDTAGQEDYERL--------R----PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~--------~----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 137 (205)
.+.+.|+||||....... . ...-...+..++|.|++... ..+. . ...+... --+.-+|+||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~-a~~f~~~--~~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-Q-AKAFHEA--VGLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-H-HHHHHhh--CCCCEEEEECC
Confidence 467899999996542211 1 11123467789999988543 2222 1 1112111 13457999999
Q ss_pred ccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHH
Q psy15714 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189 (205)
Q Consensus 138 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 189 (205)
|..... -.+...+...+.+ +..++ +|++++++-
T Consensus 270 D~t~~~----------------G~~l~~~~~~~~P-i~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAKG----------------GVVFAIADELGIP-IKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCc----------------cHHHHHHHHHCCC-EEEEe--CCCChhhCc
Confidence 954321 1344445555666 66666 777787664
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=98.11 E-value=9.5e-06 Score=63.56 Aligned_cols=96 Identities=17% Similarity=0.084 Sum_probs=53.5
Q ss_pred EEEEEEEcCCCcccccc----ccc--CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714 71 YDVTLWDTAGQEDYERL----RPM--SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~----~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 144 (205)
+.+.|+||+|....... ... ..-..+.+++|.|++......+ ....+... --+--+++||.|.....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~----~a~~f~~~--~~~~giIlTKlD~~~~~- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE----QAREFNEA--VGIDGVILTKVDADAKG- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH----HHHHHHhc--CCCCEEEEeeecCCCCc-
Confidence 46899999997542211 011 1235788899999876432222 11222221 12357899999986532
Q ss_pred hhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHH
Q psy15714 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191 (205)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 191 (205)
. .+...+...+.+ +..++ +|.+++++..+
T Consensus 296 -------------G--~~ls~~~~~~~P-i~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 296 -------------G--AALSIAYVIGKP-ILFLG--VGQGYDDLIPF 324 (336)
T ss_pred -------------c--HHHHHHHHHCcC-EEEEe--CCCChhhcccC
Confidence 1 233333444555 55555 78888776543
No 379
>PRK12288 GTPase RsgA; Reviewed
Probab=98.11 E-value=6.7e-06 Score=64.81 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q psy15714 26 VTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~~ 47 (205)
++++|.+|+|||||||+|.+..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 7899999999999999999764
No 380
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.07 E-value=2.1e-05 Score=58.42 Aligned_cols=88 Identities=19% Similarity=0.119 Sum_probs=51.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC--CcCccccccceeEEE-CCEEEEEEEEEcCCCcccccc------cc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTD--YVPTVFDNYPDTITV-DNKTYDVTLWDTAGQEDYERL------RP 89 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~------~~ 89 (205)
....-|.|+|++++|||+|+|++++. .|... ..+++...+.-...+ .+....+.++||+|-...... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567899999999999999999998 55322 112221111111111 123467999999996543221 11
Q ss_pred cCcCC--CcEEEEEEECCCcc
Q psy15714 90 MSYPN--TDCFLLCFSIGSTS 108 (205)
Q Consensus 90 ~~~~~--~~~~i~v~d~~~~~ 108 (205)
..+.. ++.+||..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 12223 77777777655443
No 381
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.06 E-value=2.1e-05 Score=44.46 Aligned_cols=45 Identities=29% Similarity=0.407 Sum_probs=31.9
Q ss_pred CCCcEEEEEEECCCcc--hHHHHHHHHHHHHhhhCCCCCEEEEeeCcc
Q psy15714 93 PNTDCFLLCFSIGSTS--SYENILSKWYPELKHHCPKVPIILVGTKAD 138 (205)
Q Consensus 93 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 138 (205)
.-.++++|++|++... ++++.. .+...++..+.+.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~-~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQL-SLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHH-HHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHH-HHHHHHHHHcCCCCEEEEEeccC
Confidence 4578999999999764 566655 78888988889999999999998
No 382
>PRK12289 GTPase RsgA; Reviewed
Probab=98.06 E-value=8.4e-06 Score=64.33 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++|+|.+|+|||||||++.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 37999999999999999999754
No 383
>KOG0466|consensus
Probab=98.04 E-value=5.7e-06 Score=62.72 Aligned_cols=111 Identities=21% Similarity=0.176 Sum_probs=69.2
Q ss_pred EEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc----chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh
Q psy15714 72 DVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST----SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID 147 (205)
Q Consensus 72 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 147 (205)
.+.+.|+|||+-.-...-.-..-.|++++++..+.. ++-+.+. -..++. =..++++-||+||.......
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLa--aveiM~----LkhiiilQNKiDli~e~~A~- 198 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLA--AVEIMK----LKHIIILQNKIDLIKESQAL- 198 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHH--HHHHhh----hceEEEEechhhhhhHHHHH-
Confidence 356779999987554433334446777777765532 3333332 122221 35689999999998764221
Q ss_pred hhhhhccccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 148 KKKAAEVDLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
--.++.+.|...- ...|++++||.-++||+-+.++|+..+--
T Consensus 199 ---------eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 199 ---------EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred ---------HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 1122334444332 23459999999999999999999987643
No 384
>KOG0467|consensus
Probab=98.02 E-value=2e-05 Score=66.36 Aligned_cols=114 Identities=19% Similarity=0.161 Sum_probs=75.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCcC------ccccccc-------eeEEECCEEEEEEEEEcCCCcccc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTDYVP------TVFDNYP-------DTITVDNKTYDVTLWDTAGQEDYE 85 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~------t~~~~~~-------~~~~~~~~~~~~~i~D~~g~~~~~ 85 (205)
..--+|+++..-.-|||||...+... .+...... +..+... ..+..--+.+.+.++|.|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 34457899999999999999887742 22111111 1111111 122222245778999999999999
Q ss_pred cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhh-hCCCCCEEEEeeCccc
Q psy15714 86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH-HCPKVPIILVGTKADL 139 (205)
Q Consensus 86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl 139 (205)
+.......-+|++++++|+...-..+.. ..+++ .......++|+||+|.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~-----~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTY-----AVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHH-----HHHHHHHHccCceEEEEehhhh
Confidence 9888888999999999999866433332 11221 1247788999999993
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.02 E-value=1.3e-05 Score=60.34 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
-.++++|.+|+|||||+|++.+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 368999999999999999999754
No 386
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.02 E-value=2.3e-05 Score=59.83 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=55.0
Q ss_pred EEEEEEEEcCCCccccccc------------ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCc
Q psy15714 70 TYDVTLWDTAGQEDYERLR------------PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 137 (205)
.+.+.|+|+||........ ...-...+.+++|.|++... +.+. ....+.+.. -+--+|+||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~--~~~~f~~~~--~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE--QAKVFNEAV--GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH--HHHHHHhhC--CCCEEEEEcc
Confidence 3678999999975432221 11223488999999997532 2221 222232221 2457999999
Q ss_pred ccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHH
Q psy15714 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190 (205)
Q Consensus 138 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 190 (205)
|..... -.+..+....+.+ +..++ +|++++++-.
T Consensus 228 De~~~~----------------G~~l~~~~~~~~P-i~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 228 DGTAKG----------------GIILSIAYELKLP-IKFIG--VGEKIDDLAP 261 (272)
T ss_pred CCCCCc----------------cHHHHHHHHHCcC-EEEEe--CCCChHhCcc
Confidence 975532 1233444455555 55555 7777776643
No 387
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.01 E-value=8.1e-05 Score=56.86 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=66.7
Q ss_pred cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714 86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (205)
.+.+....+.|-+++++.+.+++--..+...++-..+.. ++.-+|++||+||.+... .-.++....
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~------------~~~~~~~~~ 136 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE------------AAVKELLRE 136 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH------------HHHHHHHHH
Confidence 334445566788888888888764334443555555544 888899999999987642 111456667
Q ss_pred HHHcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714 166 RRKIKAAEYLECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 166 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 194 (205)
...++.. .+.+|++++++++++...+..
T Consensus 137 y~~~gy~-v~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 137 YEDIGYP-VLFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred HHhCCee-EEEecCcCcccHHHHHHHhcC
Confidence 7778888 999999999999999887654
No 388
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.97 E-value=1.5e-05 Score=61.51 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=22.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKF 48 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~ 48 (205)
-.++++|++|+|||||+|.+.+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 4799999999999999999997643
No 389
>PRK13695 putative NTPase; Provisional
Probab=97.97 E-value=0.00016 Score=51.56 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
+||+++|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999987543
No 390
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.89 E-value=2.6e-05 Score=62.03 Aligned_cols=112 Identities=16% Similarity=0.083 Sum_probs=57.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC----CCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccc--------c
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPT----DYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRP--------M 90 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~----~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~ 90 (205)
.++.++|.+|+|||||+|++.+..... ...+..++.. ...+..++ .+.++||||-.....+.. .
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~~~~~~~~l~~~~l~~ 231 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIINSHQMAHYLDKKDLKY 231 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCChhHhhhhcCHHHHhh
Confidence 489999999999999999999743211 1111111111 11233322 256899999543221110 1
Q ss_pred C--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 91 S--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 91 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
. -+......+..+...--.+..+ .+++.+.. ...++.+.+++.+....
T Consensus 232 ~~~~~~i~~~~~~l~~~q~~~~ggl--~~~d~~~~--~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 232 ITPKKEIKPKTYQLNPNQTLFLGGL--ARFDYLKG--EKTSFTFYVSNELNIHR 281 (360)
T ss_pred cCCCCccCceEEEeCCCCEEEEceE--EEEEEecC--CceEEEEEccCCceeEe
Confidence 1 1234555666554433333332 23332322 25567777777775543
No 391
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.86 E-value=9.5e-06 Score=58.08 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=39.2
Q ss_pred EEEEEEEEcCCCcccccc--ccc---CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 70 TYDVTLWDTAGQEDYERL--RPM---SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~--~~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
.....+..+.|...-..+ ... ..-..+.+|.|+|+.+-.........+...+... =+|++||+|+.+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCCh
Confidence 356677788775443333 000 0224688999999976543444443555555443 3899999998765
No 392
>PRK00098 GTPase RsgA; Reviewed
Probab=97.85 E-value=3.3e-05 Score=59.87 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
-.++++|.+|+|||||+|++.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999998754
No 393
>KOG4273|consensus
Probab=97.85 E-value=0.00044 Score=51.30 Aligned_cols=168 Identities=16% Similarity=0.203 Sum_probs=94.8
Q ss_pred eEEEEECCCCC--CHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEE--EEEEcCCCcccccccccCcCCCcEEE
Q psy15714 24 LKVTTVGDGMV--GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDV--TLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 24 ~ki~v~G~~~~--GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
..++|+|..|+ ||.+|+.++....|.....+...+.+. --+++++-+.- .+.=.+--+.+-...........++|
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h-gwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH-GWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeee-ceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 46799999998 999999999988876544443333321 12233332221 11111111222222223455667899
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh-----hh-------------------------
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID-----KK------------------------- 149 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-----~~------------------------- 149 (205)
.|||.+....+..+. .|+.--.-...+ -.+-++||.|...+.-... +.
T Consensus 84 mvfdlse~s~l~alq-dwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss 161 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQ-DWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS 161 (418)
T ss_pred EEEeccchhhhHHHH-hhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence 999999888888876 786532222112 1357899999754321100 00
Q ss_pred --hhhccccccHHHHHHHHHHcCCceEEEcccCC------------CCCHHHHHHHHHHH
Q psy15714 150 --KAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL------------NEGLDQVFIAAVRS 195 (205)
Q Consensus 150 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~i~~~ 195 (205)
...+........+.+|+...++. +++.+|.. ..|++.+|..+...
T Consensus 162 llgsedasldirga~lewc~e~~~e-fieacasn~dfd~c~~~dgdsqgverifgal~ah 220 (418)
T KOG4273|consen 162 LLGSEDASLDIRGAALEWCLEHGFE-FIEACASNEDFDECDDDDGDSQGVERIFGALNAH 220 (418)
T ss_pred ccccccchhhHHHHHHHHHHhcCce-eeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence 00001112233467888888888 89988853 23678888776554
No 394
>PRK13796 GTPase YqeH; Provisional
Probab=97.85 E-value=2.9e-05 Score=61.85 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
-++.++|.+|+|||||+|++...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47999999999999999999864
No 395
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.83 E-value=0.00012 Score=59.09 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=37.7
Q ss_pred EEEEEEEEcCCCcccccc-----cc-cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714 70 TYDVTLWDTAGQEDYERL-----RP-MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR 140 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~-----~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 140 (205)
.+.+.|+||+|....... .. ......+-+++|.|++......+. ...+.+. --+--+|+||.|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCC
Confidence 467899999996543211 11 112356789999998755433222 2222222 23557888888864
No 396
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.83 E-value=0.0001 Score=54.11 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=39.0
Q ss_pred EEEEEEEc-CCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCC-CCEEEEeeCcccc
Q psy15714 71 YDVTLWDT-AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLR 140 (205)
Q Consensus 71 ~~~~i~D~-~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~ 140 (205)
..+.|.|+ +|-+-| -+...+++|.+|.|.|.+-. ++..+. ......... . .++.+|+||.|-.
T Consensus 134 ~e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~~-sl~tae-ri~~L~~el--g~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSYK-SLRTAE-RIKELAEEL--GIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhh---ccccccCCCEEEEEeCCcHH-HHHHHH-HHHHHHHHh--CCceEEEEEeeccch
Confidence 34555555 333322 24567899999999998743 444432 233333333 4 8899999999954
No 397
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.77 E-value=0.00042 Score=54.12 Aligned_cols=45 Identities=16% Similarity=0.043 Sum_probs=29.8
Q ss_pred CCcEEEEEEECCCcchHHH-HHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 94 NTDCFLLCFSIGSTSSYEN-ILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 94 ~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
..|++|-|+|+.+-..... ..+...+.+... =+|++||.|+.+..
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D~ivlNK~Dlv~~~ 161 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----DVIVLNKTDLVDAE 161 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----cEEEEecccCCCHH
Confidence 3688999999876544333 333444555433 38999999998763
No 398
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.00027 Score=63.35 Aligned_cols=112 Identities=21% Similarity=0.203 Sum_probs=59.7
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCC--cCccccc-cceeEEECCEEEEEEEEEcCCCcc--------cccccc---
Q psy15714 26 VTTVGDGMVGKTCLLITHTENKFP--TDY--VPTVFDN-YPDTITVDNKTYDVTLWDTAGQED--------YERLRP--- 89 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~~~~--~~~--~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~--- 89 (205)
.+|+|++|+||||++.. .+-.|+ ... ....... ..-.-.+.+ .-.++||+|... -+..|.
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 58999999999999842 112221 100 0000110 001111222 356779888321 111122
Q ss_pred ------cCcCCCcEEEEEEECCCcch----H-----HHHHHHHHHHHhh-hCCCCCEEEEeeCcccccC
Q psy15714 90 ------MSYPNTDCFLLCFSIGSTSS----Y-----ENILSKWYPELKH-HCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 90 ------~~~~~~~~~i~v~d~~~~~s----~-----~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~ 142 (205)
+..+..|+||+..|+.+--+ . ..+. .-+..+.. ..-..|+.|++||.|+...
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR-~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLR-ARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHH-HHHHHHHHhhccCCceEEEEeccccccc
Confidence 34677999999999875311 1 1122 11233333 2268999999999999764
No 399
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.71 E-value=0.00015 Score=50.26 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=35.5
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcc
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 138 (205)
.+.+.|.|++|..... ..++..+|.++++...+--+.+.-. ++ ..+ ..-=+++.||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~--k~-~~~-----~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAI--KA-GIM-----EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHh--hh-hHh-----hhcCEEEEeCCC
Confidence 4678899999865322 2478899999998876521111111 11 222 223478899987
No 400
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.71 E-value=0.00043 Score=54.14 Aligned_cols=21 Identities=29% Similarity=0.115 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy15714 26 VTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~ 46 (205)
.+|.|.-|+|||||++++...
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578899999999999998854
No 401
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.70 E-value=8.2e-05 Score=56.84 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
..+++|.+|+|||||+|++...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 6789999999999999999963
No 402
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00047 Score=56.99 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=19.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.-.|+|+|+.|+||||++.++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999866653
No 403
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00046 Score=54.91 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=19.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.-.++++|++|+||||++.++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34788999999999999977754
No 404
>KOG1533|consensus
Probab=97.59 E-value=0.00018 Score=52.81 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=61.3
Q ss_pred EEEEEEEEcCCCccccccc------ccCcCCCcEEEEEEEC------CCcchHHHHHHHHHHHHhhh-CCCCCEEEEeeC
Q psy15714 70 TYDVTLWDTAGQEDYERLR------PMSYPNTDCFLLCFSI------GSTSSYENILSKWYPELKHH-CPKVPIILVGTK 136 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~------~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK 136 (205)
+..+.++|+|||-++-... -..++..+.-+.++.. +++..+... ++..+... .-..|=|=|+.|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK 172 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSK 172 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhH
Confidence 4568899999975532111 1123334444444332 455655553 22222222 237888999999
Q ss_pred cccccCchh----------hhhhh----------hhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHH
Q psy15714 137 ADLRSENKT----------IDKKK----------AAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAA 192 (205)
Q Consensus 137 ~Dl~~~~~~----------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 192 (205)
+|+...... .+... ..+.+.--.++...+....+...+...+..+.+++-.+...|
T Consensus 173 ~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~I 248 (290)
T KOG1533|consen 173 ADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTI 248 (290)
T ss_pred hHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHH
Confidence 998644320 00000 000001123345566667777766666666666666665444
No 405
>KOG0459|consensus
Probab=97.59 E-value=6e-05 Score=59.32 Aligned_cols=167 Identities=12% Similarity=0.070 Sum_probs=96.0
Q ss_pred ccccceeeEEEEECCCCCCHHHHHHHHhc--CCCCC---------------------CCcCcc-cccc-ceeEE-----E
Q psy15714 17 SKSVHKALKVTTVGDGMVGKTCLLITHTE--NKFPT---------------------DYVPTV-FDNY-PDTIT-----V 66 (205)
Q Consensus 17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~---------------------~~~~t~-~~~~-~~~~~-----~ 66 (205)
...+...++++++|.-.+||||+-..+.. +.... -+..+. ..+. .+.+. +
T Consensus 73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 34567789999999999999998543331 00000 000111 1111 11221 1
Q ss_pred CCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc---hHHHH-HHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 67 DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS---SYENI-LSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 67 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
.-..-.++|.|.|||..|......-..++|+.++|+++--.+ .|+.= ...=..++.+...-...|+++||+|-+.-
T Consensus 153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 232 (501)
T ss_pred EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc
Confidence 123346899999999999988888889999999999863221 11110 00111223333345678999999998766
Q ss_pred chhhhhhhhhccccccHHHHHHHHHHcCC-----ceEEEcccCCCCCHHHHH
Q psy15714 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKA-----AEYLECSAKLNEGLDQVF 189 (205)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 189 (205)
++..+.-+ -..+....+.+.++. ..++++|..+|.++.+.-
T Consensus 233 nWs~eRy~------E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 233 NWSNERYE------ECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred CcchhhHH------HHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 54332211 112233344443322 348999999999987643
No 406
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.54 E-value=7.5e-05 Score=49.72 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
+|+|.|++||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888764
No 407
>PRK08118 topology modulation protein; Reviewed
Probab=97.54 E-value=8e-05 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
||+|+|++|+|||||.+.+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999887754
No 408
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.52 E-value=7.9e-05 Score=53.25 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.||+|+|+|||||||+.+++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988876
No 409
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.52 E-value=0.00013 Score=51.86 Aligned_cols=67 Identities=18% Similarity=0.118 Sum_probs=38.4
Q ss_pred EEEEEEEEcCCCcccccc----cccC--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 70 TYDVTLWDTAGQEDYERL----RPMS--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
.+.+.|.|++|...+... ...+ ....+.+++|+|...... .. .+...+.+.. + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~-~~~~~~~~~~-~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AV-NQAKAFNEAL-G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HH-HHHHHHHhhC-C-CCEEEEECCcCCCC
Confidence 355788999997432111 1111 234899999999865433 22 2333333222 2 35678899997654
No 410
>KOG2484|consensus
Probab=97.47 E-value=0.00016 Score=56.89 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=40.8
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccc-cceeEEECCEEEEEEEEEcCCC
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDN-YPDTITVDNKTYDVTLWDTAGQ 81 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~ 81 (205)
.-.+.+++.|+|-|++||||+||++...+.... -++.+.. ....+..+. .+.|.|.||-
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCce
Confidence 457889999999999999999999999887432 2222222 223333332 5778899994
No 411
>KOG0099|consensus
Probab=97.47 E-value=0.0004 Score=51.87 Aligned_cols=129 Identities=15% Similarity=0.144 Sum_probs=76.0
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc-------hHHHHHHHHHHHHhhhC-----CCCCEEEEeeCc
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS-------SYENILSKWYPELKHHC-----PKVPIILVGTKA 137 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~ 137 (205)
.++|+.+|.+|+..-+..|.+.+.+.-++|||...++.. +-..+. +-+..++..- .-+.+|+++||.
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~-EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQ-EALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHH-HHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 356889999999999999999999999999999877421 111111 2222222211 358899999999
Q ss_pred ccccCchhhhhh--------------------hhhc------cccccHHHHHHHHHHc----CCceEEEcccCCCCCHHH
Q psy15714 138 DLRSENKTIDKK--------------------KAAE------VDLVSTSQGKKMRRKI----KAAEYLECSAKLNEGLDQ 187 (205)
Q Consensus 138 Dl~~~~~~~~~~--------------------~~~~------~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~ 187 (205)
|+.......... +... .+....++........ ..+.+..+.|.+-++|..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 985432211100 0000 0001111111111111 112245688999999999
Q ss_pred HHHHHHHHHHhh
Q psy15714 188 VFIAAVRSAVKK 199 (205)
Q Consensus 188 ~~~~i~~~~~~~ 199 (205)
+|......+...
T Consensus 360 VFnDcrdiIqr~ 371 (379)
T KOG0099|consen 360 VFNDCRDIIQRM 371 (379)
T ss_pred HHHHHHHHHHHH
Confidence 999887776553
No 412
>PRK07261 topology modulation protein; Provisional
Probab=97.45 E-value=0.00012 Score=52.09 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
.||+|+|++|+|||||.+.+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999988764
No 413
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.45 E-value=0.00052 Score=47.02 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=44.7
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccc
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL 139 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 139 (205)
+.+.|+|+|+... ......+..+|.++++.+.+ ..++.... ..+..+.......++.+|.|+.+.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~~~~~-~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSITDAY-ALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHHHHHH-HHHHHHHHhcCCCCEEEEEeCCCC
Confidence 6789999987543 22345788999999999865 44555544 344555444446788899999874
No 414
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.44 E-value=0.00016 Score=41.97 Aligned_cols=21 Identities=24% Similarity=0.185 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
-.+|.|+.|+|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999987664
No 415
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00096 Score=53.92 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.-+++++|+.|+||||++..+.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999986654
No 416
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.44 E-value=0.00063 Score=48.39 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=29.8
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
|++++|+|+.++.+-.+ ..+...+.-...+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence 78999999987643322 1333432111137899999999999754
No 417
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.42 E-value=0.0003 Score=51.59 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=21.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.+..-|+|+|++|+|||||++++...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34467889999999999999998754
No 418
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.42 E-value=0.00071 Score=54.90 Aligned_cols=66 Identities=21% Similarity=0.157 Sum_probs=37.0
Q ss_pred EEEEEEEEcCCCcccccc-cc-----cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc
Q psy15714 70 TYDVTLWDTAGQEDYERL-RP-----MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~-~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 141 (205)
.+.+.|.||+|....... .. ...-..+.+++|+|+.... +.. .+...+.... + ..-+|.||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~-~~a~~f~~~v-~-i~giIlTKlD~~~ 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAV-NTAKTFNERL-G-LTGVVLTKLDGDA 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHH-HHHHHHHhhC-C-CCEEEEeCccCcc
Confidence 356899999995432211 00 0123477889999987543 332 2333333221 1 2358899999643
No 419
>KOG1424|consensus
Probab=97.41 E-value=0.00026 Score=57.42 Aligned_cols=56 Identities=25% Similarity=0.189 Sum_probs=39.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQ 81 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~ 81 (205)
..+.|.++|-|++||||+||++.+.+... .+.|.+.... .++.+.. .+.+.|+||-
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 36999999999999999999999988643 2344444332 2333332 4678899993
No 420
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.40 E-value=0.00013 Score=50.02 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q psy15714 26 VTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~ 45 (205)
|+++|+||+|||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998874
No 421
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00016 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.-+++.||+|+|||||++++....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999998776
No 422
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.36 E-value=0.00035 Score=50.34 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.=|+++|++|+|||||++++...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999864
No 423
>PRK10867 signal recognition particle protein; Provisional
Probab=97.35 E-value=0.00044 Score=56.16 Aligned_cols=65 Identities=22% Similarity=0.189 Sum_probs=35.8
Q ss_pred EEEEEEEEcCCCcccccc-cc-----cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCccccc
Q psy15714 70 TYDVTLWDTAGQEDYERL-RP-----MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRS 141 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~-~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 141 (205)
.+.+.|+||+|....... .. ...-..+.+++|.|+.... ++. .....+.. .++ .-+|.||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av-~~a~~F~~---~~~i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAV-NTAKAFNE---ALGLTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHH-HHHHHHHh---hCCCCEEEEeCccCcc
Confidence 367899999996432111 00 0112467789999976432 222 22233332 233 357889999643
No 424
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.35 E-value=0.0013 Score=41.43 Aligned_cols=69 Identities=20% Similarity=0.204 Sum_probs=43.8
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc-cccCcCCCcEEEEEEEC
Q psy15714 26 VTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL-RPMSYPNTDCFLLCFSI 104 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~ 104 (205)
+++.|.+|+||||+...+...-.... .+...++ .+.+.|+++....... .......+|.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g---------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG---------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 67889999999999866554321111 1122223 6888899987543321 13466788999999876
Q ss_pred CCc
Q psy15714 105 GST 107 (205)
Q Consensus 105 ~~~ 107 (205)
...
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 543
No 425
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.34 E-value=0.0032 Score=49.84 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy15714 26 VTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~ 46 (205)
.+|.|.-|+|||||++++...
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 678899999999999998853
No 426
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.33 E-value=0.0003 Score=57.21 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=19.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHh
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~ 44 (205)
.+..|+++|++|+||||++..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999986554
No 427
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.32 E-value=0.0012 Score=44.87 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKF 48 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~ 48 (205)
-.+++.|++|+|||+|++.+...-.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999988876543
No 428
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.30 E-value=0.00014 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999988865
No 429
>KOG2485|consensus
Probab=97.30 E-value=0.0003 Score=53.74 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=36.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCC------CcCccccccceeEEECCEEEEEEEEEcCCC
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTD------YVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~ 81 (205)
....+.+.|+|-|++|||||+|++......-. ..+.....+...+.+.... .+.+.|+||-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 34678999999999999999988775432111 1111111112223443333 3777899994
No 430
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00031 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKF 48 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~ 48 (205)
.++++|++|+|||||++.+..-+-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 689999999999999998876553
No 431
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.28 E-value=0.00029 Score=42.09 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy15714 26 VTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~ 46 (205)
|++.|++|+||||+.+++...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999887765
No 432
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.27 E-value=0.00049 Score=54.73 Aligned_cols=66 Identities=27% Similarity=0.300 Sum_probs=36.6
Q ss_pred EEEEEEEEEcCCCcccccc----cccCcC--CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCE-EEEeeCccccc
Q psy15714 69 KTYDVTLWDTAGQEDYERL----RPMSYP--NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKADLRS 141 (205)
Q Consensus 69 ~~~~~~i~D~~g~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~ 141 (205)
..+.+.+.||.|...+... ...++. ...-+.+|++++... .++. ..+.++. .+|+ -++.||.|...
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlk----ei~~~f~-~~~i~~~I~TKlDET~ 352 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLK----EIIKQFS-LFPIDGLIFTKLDETT 352 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHH----HHHHHhc-cCCcceeEEEcccccC
Confidence 3457889999997665432 111222 233455566766542 2333 3333333 3444 58899999754
No 433
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.25 E-value=0.00029 Score=49.92 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=29.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT 78 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~ 78 (205)
||++.|++|+|||||++++...--... .+ ..-.+...+.-++...-|.+.|+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~-v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG-LP-VGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC-GG-EEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC-Cc-cceEEeecccCCCceEEEEEEEC
Confidence 689999999999999988774321110 11 12222333444555555666666
No 434
>KOG0469|consensus
Probab=97.22 E-value=0.001 Score=54.11 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=73.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC------CCCcCccccccceeEEE-----------------------CCEEEEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK--FP------TDYVPTVFDNYPDTITV-----------------------DNKTYDV 73 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~--~~------~~~~~t~~~~~~~~~~~-----------------------~~~~~~~ 73 (205)
++.|+....-|||||-..+.... +. ..+..|..+.....+++ ++..+-+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 56788899999999987776421 11 11111112222222222 2456789
Q ss_pred EEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714 74 TLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR 140 (205)
Q Consensus 74 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 140 (205)
.++|.|||-.|.+-....++-.|+.++|+|..+.--.+.-. -+.+.+.+ .+.-+++.||.|..
T Consensus 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTET-VLrQA~~E---RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIAE---RIKPVLVMNKMDRA 163 (842)
T ss_pred EeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHH-HHHHHHHh---hccceEEeehhhHH
Confidence 99999999999998888899999999999988775443321 23333333 35557889999954
No 435
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.20 E-value=0.00032 Score=47.71 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999777654
No 436
>PRK06217 hypothetical protein; Validated
Probab=97.19 E-value=0.00037 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.||+|+|.+|+|||||.+++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999888753
No 437
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.17 E-value=0.0016 Score=42.00 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=47.3
Q ss_pred EEEEC-CCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714 26 VTTVG-DGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI 104 (205)
Q Consensus 26 i~v~G-~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 104 (205)
|.+.| ..|+||||+...+...-.... .++.. +..+. .+.+.|+|+|+...... ...+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl~------~d~d~-~~d~viiD~p~~~~~~~--~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVLL------IDLDP-QYDYIIIDTPPSLGLLT--RNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEEE------EeCCC-CCCEEEEeCcCCCCHHH--HHHHHHCCEEEEeccC
Confidence 56777 568999998744332211010 11111 11111 16789999998754322 3567789999999976
Q ss_pred CCcchHHHHHHHHHH
Q psy15714 105 GSTSSYENILSKWYP 119 (205)
Q Consensus 105 ~~~~s~~~~~~~~~~ 119 (205)
+ ..++..+. .+++
T Consensus 72 ~-~~s~~~~~-~~~~ 84 (104)
T cd02042 72 S-PLDLDGLE-KLLE 84 (104)
T ss_pred C-HHHHHHHH-HHHH
Confidence 4 45566654 4444
No 438
>PRK03839 putative kinase; Provisional
Probab=97.16 E-value=0.00037 Score=49.90 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
+|+++|.||+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999877653
No 439
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.12 E-value=0.00046 Score=46.40 Aligned_cols=22 Identities=23% Similarity=0.138 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q psy15714 26 VTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~~ 47 (205)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999998877653
No 440
>PRK14530 adenylate kinase; Provisional
Probab=97.09 E-value=0.00049 Score=50.77 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
.+|+|+|+|||||||+.+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999987753
No 441
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.08 E-value=0.00048 Score=51.85 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
-++++|+.|+|||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 469999999999999998886
No 442
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.05 E-value=0.00061 Score=45.89 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPT 50 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~ 50 (205)
-.++++|++|+||||+++.+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 478999999999999999887765433
No 443
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.04 E-value=0.00051 Score=45.98 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy15714 26 VTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~ 46 (205)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999777654
No 444
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.04 E-value=0.00078 Score=49.40 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
++..-|+|+|++|+|||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999988875
No 445
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.03 E-value=0.00065 Score=48.94 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++|+|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999988654
No 446
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.02 E-value=0.00099 Score=52.24 Aligned_cols=93 Identities=22% Similarity=0.184 Sum_probs=66.7
Q ss_pred EcCCCc-ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccc
Q psy15714 77 DTAGQE-DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVD 155 (205)
Q Consensus 77 D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 155 (205)
+.+|+. ++.......+...|+++-|.|+-++.+-.. ..+.+...+.|.++|+||.|+.+.
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~------~~l~~~v~~k~~i~vlNK~DL~~~------------- 76 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN------PELERIVKEKPKLLVLNKADLAPK------------- 76 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC------ccHHHHHccCCcEEEEehhhcCCH-------------
Confidence 457764 455566678999999999999998876433 234455556777999999999876
Q ss_pred cccHHHHHHHHHHcCCceEEEcccCCCCCHHHHH
Q psy15714 156 LVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189 (205)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 189 (205)
....+..+.+.+..+.. .+.++++.+.+...+.
T Consensus 77 ~~~~~W~~~~~~~~~~~-~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 77 EVTKKWKKYFKKEEGIK-PIFVSAKSRQGGKKIR 109 (322)
T ss_pred HHHHHHHHHHHhcCCCc-cEEEEeecccCccchH
Confidence 34566677777766555 6777888777655555
No 447
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.0006 Score=47.80 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q psy15714 24 LKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~ 44 (205)
++|+|.|.||+||||+.+++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999998887
No 448
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.01 E-value=0.0006 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.200 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
-++|+|++|||||||++-+-.-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57999999999999998665433
No 449
>PRK04195 replication factor C large subunit; Provisional
Probab=97.01 E-value=0.0052 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.-.+++.|++|+||||+++.+...-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999887643
No 450
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.00063 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
-|+++|++|+|||||++.+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998777643
No 451
>PRK08233 hypothetical protein; Provisional
Probab=97.00 E-value=0.00079 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.+-|+|.|.+|+|||||.+++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367889999999999999888754
No 452
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.00 E-value=0.00068 Score=50.57 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
...+|++|+|.+|+|||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999777654
No 453
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.99 E-value=0.0014 Score=46.81 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.|+++|++|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999988874
No 454
>KOG3929|consensus
Probab=96.99 E-value=0.00069 Score=50.54 Aligned_cols=88 Identities=13% Similarity=0.188 Sum_probs=55.9
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCE--EEEEEEEEcCCCcccccccccCcCC-
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNK--TYDVTLWDTAGQEDYERLRPMSYPN- 94 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~- 94 (205)
.....+..|++.|+.+. ||+|++++...- +...++..-.|+.--...+. .--..+|+++|-.....+...-+..
T Consensus 40 ~~~~~E~~I~~~Gn~~~--tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~ 116 (363)
T KOG3929|consen 40 IAEKFEFFIGSKGNGGK--TTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGD 116 (363)
T ss_pred hhccceeEEEEecCCce--eEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCccccc
Confidence 34567888999998765 999998887663 34456655555433333332 2236799999977665554333322
Q ss_pred ---CcEEEEEEECCCcc
Q psy15714 95 ---TDCFLLCFSIGSTS 108 (205)
Q Consensus 95 ---~~~~i~v~d~~~~~ 108 (205)
.=.+|++.|.+++.
T Consensus 117 ~l~~~slIL~LDls~p~ 133 (363)
T KOG3929|consen 117 TLRTFSLILVLDLSKPN 133 (363)
T ss_pred chhhhhheeeeecCChH
Confidence 22467888999763
No 455
>PRK13949 shikimate kinase; Provisional
Probab=96.98 E-value=0.00074 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.186 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
+|+|+|++|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987664
No 456
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.97 E-value=0.00069 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999987654
No 457
>PRK14532 adenylate kinase; Provisional
Probab=96.97 E-value=0.00072 Score=48.74 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
++|+++|+||+||||+.+++..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988864
No 458
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.97 E-value=0.00075 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
..+||+|+|+|||||||+.+.+..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999987764
No 459
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.97 E-value=0.00094 Score=49.02 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.+...|+|.|++|+|||||.+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999877653
No 460
>PLN03025 replication factor C subunit; Provisional
Probab=96.97 E-value=0.0082 Score=47.09 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
..+++.|++|+||||++..+...-
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999998776544
No 461
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.00072 Score=49.85 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999998877
No 462
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.95 E-value=0.00081 Score=47.99 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=20.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHh
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~ 44 (205)
..--+++++|+.|+|||||++.+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 344578999999999999999875
No 463
>KOG3347|consensus
Probab=96.95 E-value=0.00065 Score=46.47 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
....+|+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4567999999999999999988773
No 464
>KOG0066|consensus
Probab=96.94 E-value=0.0063 Score=49.15 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
...-||+|+|+.|+|||||+.-+.+.
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcC
Confidence 34569999999999999999766653
No 465
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.94 E-value=0.00084 Score=45.89 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy15714 26 VTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~ 46 (205)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999988864
No 466
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.93 E-value=0.0037 Score=40.67 Aligned_cols=61 Identities=18% Similarity=0.076 Sum_probs=40.8
Q ss_pred EEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-C-CCCEEEEeeC
Q psy15714 72 DVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-P-KVPIILVGTK 136 (205)
Q Consensus 72 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~ivv~nK 136 (205)
.+.|.|+|+..... ....+..+|.++++.+.+ ..+...+. .++..+++.. + ...+.+|+|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~s~~~~~-~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LPSIRNAK-RLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hHHHHHHH-HHHHHHHHcCCCCcCceEEEecC
Confidence 68899998865432 234678899999998755 44566655 5666666654 2 3566677774
No 467
>PRK14531 adenylate kinase; Provisional
Probab=96.93 E-value=0.00088 Score=48.14 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
.+|+++|+||+||||+.+++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999887754
No 468
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.93 E-value=0.00085 Score=46.03 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.|+|+|+.++|||||++.+.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999887754
No 469
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.0008 Score=50.47 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
-+.++|+.|+|||||++.+.+
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999987
No 470
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.92 E-value=0.00081 Score=48.31 Aligned_cols=22 Identities=23% Similarity=0.063 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
..|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988873
No 471
>KOG2423|consensus
Probab=96.91 E-value=0.0069 Score=48.09 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=66.0
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
.+...|++|-|.|+-|+..-.. ...-..++...+...+++|+||+||... .++......+++.+.
T Consensus 210 ViDSSDVvvqVlDARDPmGTrc--~~ve~ylkke~phKHli~vLNKvDLVPt-------------wvt~~Wv~~lSkeyP 274 (572)
T KOG2423|consen 210 VIDSSDVVVQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIYVLNKVDLVPT-------------WVTAKWVRHLSKEYP 274 (572)
T ss_pred hhcccceeEEeeeccCCccccc--HHHHHHHhhcCCcceeEEEeeccccccH-------------HHHHHHHHHHhhhCc
Confidence 3667899999999998854322 1344556666688999999999999876 678888999999998
Q ss_pred CceEEEcccCCCCCHHHHHHHHH
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAV 193 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~ 193 (205)
.. .|..|.....|-..+..-+.
T Consensus 275 Ti-AfHAsi~nsfGKgalI~llR 296 (572)
T KOG2423|consen 275 TI-AFHASINNSFGKGALIQLLR 296 (572)
T ss_pred ce-eeehhhcCccchhHHHHHHH
Confidence 87 78888887787544444333
No 472
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.90 E-value=0.0031 Score=42.72 Aligned_cols=24 Identities=29% Similarity=0.155 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
--|++.|+.|+|||||++.+...-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999888753
No 473
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.90 E-value=0.00091 Score=47.79 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
-.++++|+.|+|||||++.+.+-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 478999999999999999877654
No 474
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.89 E-value=0.00096 Score=49.25 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
=.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 368999999999999999888653
No 475
>PRK02496 adk adenylate kinase; Provisional
Probab=96.89 E-value=0.001 Score=47.75 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
.|++|+|+||+||||+.+.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999987764
No 476
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.89 E-value=0.00096 Score=43.32 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=18.6
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q psy15714 24 LKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~ 44 (205)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 467999999999999998875
No 477
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.89 E-value=0.0052 Score=41.02 Aligned_cols=24 Identities=21% Similarity=0.087 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
--|++-|+-|+|||||++.+...-
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999998887643
No 478
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.0023 Score=55.34 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=18.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
--|+++|+.|+||||.+.++..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 3689999999999999866653
No 479
>PLN02200 adenylate kinase family protein
Probab=96.87 E-value=0.0014 Score=48.98 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=21.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...+.|+|+|+||+||||+..++..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999887764
No 480
>PRK00625 shikimate kinase; Provisional
Probab=96.86 E-value=0.001 Score=47.36 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
+|+++|.+|+||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999987754
No 481
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.86 E-value=0.0026 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
-|+|+|++|+||||+++.+....
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999998877654
No 482
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.86 E-value=0.0009 Score=45.68 Aligned_cols=21 Identities=33% Similarity=0.243 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999977664
No 483
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.85 E-value=0.00085 Score=48.47 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
+|+|+|+||+||||+.+.+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999887753
No 484
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.84 E-value=0.0015 Score=46.48 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKF 48 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~ 48 (205)
+++|+|++|+|||||+|-+.+-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 689999999999999997776544
No 485
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.84 E-value=0.0012 Score=47.66 Aligned_cols=25 Identities=24% Similarity=0.117 Sum_probs=21.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.-.++++|++|+|||||++.+.+-.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3478999999999999999887643
No 486
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.83 E-value=0.0012 Score=48.56 Aligned_cols=24 Identities=29% Similarity=0.119 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
=.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999888653
No 487
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.83 E-value=0.0012 Score=47.72 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887643
No 488
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.83 E-value=0.0012 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
=.++++|+.|+|||||++.+.+-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999887653
No 489
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.82 E-value=0.0012 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
=.++++|++|+|||||++.+.+-.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999888653
No 490
>KOG2423|consensus
Probab=96.82 E-value=0.0011 Score=52.44 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=51.3
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCccc--ccccccCcCCC
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY--ERLRPMSYPNT 95 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~~~~~~~ 95 (205)
+...+++-|.++|-|++||||+||.|...+.+. ..|..+....=.+. --...+.++|+||---- .+-....+
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCk-vAPIpGETKVWQYI--tLmkrIfLIDcPGvVyps~dset~ivL--- 375 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCK-VAPIPGETKVWQYI--TLMKRIFLIDCPGVVYPSSDSETDIVL--- 375 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhccccc-ccCCCCcchHHHHH--HHHhceeEecCCCccCCCCCchHHHHh---
Confidence 457889999999999999999999999888643 23333322210000 00124677899994211 11111122
Q ss_pred cEEEEEEECCCcchH
Q psy15714 96 DCFLLCFSIGSTSSY 110 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~ 110 (205)
.++|-|=.+.+++.+
T Consensus 376 kGvVRVenv~~pe~y 390 (572)
T KOG2423|consen 376 KGVVRVENVKNPEDY 390 (572)
T ss_pred hceeeeeecCCHHHH
Confidence 356666667766443
No 491
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.82 E-value=0.0011 Score=48.23 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy15714 26 VTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~ 46 (205)
|.|.|++|+|||||.+.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999887653
No 492
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.81 E-value=0.0015 Score=46.40 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
..-+.|+|.+|+|||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999888765
No 493
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.81 E-value=0.0011 Score=47.46 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q psy15714 26 VTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~ 45 (205)
|+++|+|||||||+.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999988765
No 494
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.0012 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999888653
No 495
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.81 E-value=0.0012 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.098 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
=.++++|+.|+|||||++.+.+-
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999988764
No 496
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.79 E-value=0.0013 Score=48.02 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++|+|++|+|||||++.+.+-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999887653
No 497
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.79 E-value=0.0013 Score=48.34 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988764
No 498
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.78 E-value=0.0013 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|++|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999887653
No 499
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.78 E-value=0.001 Score=48.89 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
||+|+|+|||||||+...+..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 500
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0014 Score=48.54 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
=.++++|+.|+|||||++.+.+-
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999988765
Done!