Query psy15714
Match_columns 205
No_of_seqs 137 out of 1672
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 19:35:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 8E-41 2.7E-45 245.4 15.7 164 20-197 10-175 (216)
2 2atx_A Small GTP binding prote 100.0 8.9E-37 3E-41 220.7 21.6 187 12-198 7-193 (194)
3 3q3j_B RHO-related GTP-binding 100.0 3.5E-37 1.2E-41 226.3 19.6 190 12-201 16-206 (214)
4 2q3h_A RAS homolog gene family 100.0 1.5E-36 5.2E-41 220.6 21.6 187 16-202 13-199 (201)
5 3reg_A RHO-like small GTPase; 100.0 8.3E-36 2.8E-40 215.6 21.3 174 18-201 18-191 (194)
6 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.1E-35 3.6E-40 213.3 21.4 181 21-201 3-183 (186)
7 1m7b_A RND3/RHOE small GTP-bin 100.0 6.9E-36 2.4E-40 214.4 19.3 179 20-198 4-183 (184)
8 2j1l_A RHO-related GTP-binding 100.0 9.9E-36 3.4E-40 218.5 20.5 183 20-202 31-213 (214)
9 2gf9_A RAS-related protein RAB 100.0 2E-35 7E-40 212.7 21.6 185 3-201 2-188 (189)
10 2gco_A H9, RHO-related GTP-bin 100.0 5.7E-35 1.9E-39 212.5 24.0 180 19-198 21-200 (201)
11 2a5j_A RAS-related protein RAB 100.0 1.4E-35 4.7E-40 214.0 20.0 174 17-204 15-190 (191)
12 1gwn_A RHO-related GTP-binding 100.0 1.1E-35 3.8E-40 216.9 19.2 181 19-199 24-205 (205)
13 2j0v_A RAC-like GTP-binding pr 100.0 1.1E-35 3.9E-40 217.8 19.3 177 20-200 6-182 (212)
14 3ihw_A Centg3; RAS, centaurin, 100.0 1.6E-35 5.4E-40 212.6 19.3 169 17-202 14-184 (184)
15 4gzl_A RAS-related C3 botulinu 100.0 2.3E-35 8E-40 215.0 18.8 178 19-196 26-203 (204)
16 3c5c_A RAS-like protein 12; GD 100.0 1.8E-35 6.3E-40 212.8 17.9 167 17-198 15-186 (187)
17 2fv8_A H6, RHO-related GTP-bin 100.0 1.2E-34 4.2E-39 211.6 21.9 181 20-200 22-202 (207)
18 2ew1_A RAS-related protein RAB 100.0 7.1E-35 2.4E-39 212.0 20.4 170 18-201 21-192 (201)
19 2hup_A RAS-related protein RAB 100.0 3.5E-35 1.2E-39 213.7 18.5 171 18-201 24-196 (201)
20 2bov_A RAla, RAS-related prote 100.0 3.5E-35 1.2E-39 214.0 18.6 165 20-198 11-177 (206)
21 3t5g_A GTP-binding protein RHE 100.0 7.1E-35 2.4E-39 208.3 19.7 168 20-201 3-172 (181)
22 3oes_A GTPase rhebl1; small GT 100.0 3E-35 1E-39 213.9 16.9 172 16-201 17-190 (201)
23 3bwd_D RAC-like GTP-binding pr 100.0 1.4E-35 4.8E-40 212.0 14.9 177 20-198 5-181 (182)
24 3dz8_A RAS-related protein RAB 100.0 4.2E-36 1.4E-40 216.7 12.2 184 5-202 5-190 (191)
25 3tw8_B RAS-related protein RAB 100.0 2.1E-34 7.2E-39 205.5 20.4 169 19-201 5-174 (181)
26 3kkq_A RAS-related protein M-R 100.0 8.3E-35 2.8E-39 208.3 18.2 167 18-198 13-182 (183)
27 2fu5_C RAS-related protein RAB 100.0 5.4E-35 1.9E-39 209.3 16.5 168 20-201 5-174 (183)
28 2a9k_A RAS-related protein RAL 100.0 1.1E-34 3.8E-39 208.0 18.0 169 19-201 14-184 (187)
29 1z08_A RAS-related protein RAB 100.0 2.7E-34 9.3E-39 203.1 19.2 165 20-198 3-169 (170)
30 2oil_A CATX-8, RAS-related pro 100.0 2.4E-34 8.3E-39 207.7 19.3 174 15-202 17-192 (193)
31 2bme_A RAB4A, RAS-related prot 100.0 5.6E-34 1.9E-38 204.4 20.4 169 20-202 7-177 (186)
32 1z0f_A RAB14, member RAS oncog 100.0 2.7E-34 9.4E-39 204.6 18.5 166 19-198 11-178 (179)
33 2o52_A RAS-related protein RAB 100.0 1.8E-34 6.2E-39 209.7 17.6 174 16-203 18-193 (200)
34 2efe_B Small GTP-binding prote 100.0 5E-34 1.7E-38 203.7 19.5 169 19-201 8-178 (181)
35 1c1y_A RAS-related protein RAP 100.0 1.3E-34 4.4E-39 204.1 16.2 163 22-197 2-166 (167)
36 2fn4_A P23, RAS-related protei 100.0 3.4E-34 1.2E-38 204.4 18.5 169 20-202 6-176 (181)
37 2bcg_Y Protein YP2, GTP-bindin 100.0 1.3E-33 4.4E-38 205.9 21.8 166 20-199 5-172 (206)
38 2iwr_A Centaurin gamma 1; ANK 100.0 2.1E-34 7.3E-39 205.3 17.2 165 20-201 4-172 (178)
39 1u8z_A RAS-related protein RAL 100.0 2.7E-34 9.2E-39 202.4 17.4 163 22-198 3-167 (168)
40 3con_A GTPase NRAS; structural 100.0 1.4E-33 4.6E-38 203.2 21.1 173 15-202 13-187 (190)
41 1z2a_A RAS-related protein RAB 100.0 4.9E-34 1.7E-38 201.2 18.4 164 21-198 3-167 (168)
42 1zbd_A Rabphilin-3A; G protein 100.0 9.1E-34 3.1E-38 206.2 20.1 167 20-200 5-173 (203)
43 2il1_A RAB12; G-protein, GDP, 100.0 2.4E-34 8.3E-39 207.7 16.9 169 18-199 21-191 (192)
44 1r2q_A RAS-related protein RAB 100.0 4.8E-34 1.6E-38 201.6 18.1 163 20-196 3-167 (170)
45 2nzj_A GTP-binding protein REM 100.0 8.6E-34 2.9E-38 201.4 19.4 167 21-201 2-172 (175)
46 2g3y_A GTP-binding protein GEM 100.0 9.3E-34 3.2E-38 207.3 20.0 171 16-200 30-205 (211)
47 3tkl_A RAS-related protein RAB 100.0 1.2E-33 4.1E-38 204.3 20.2 168 20-201 13-182 (196)
48 3q72_A GTP-binding protein RAD 100.0 7.6E-34 2.6E-38 200.1 18.6 162 23-199 2-165 (166)
49 3bc1_A RAS-related protein RAB 100.0 9.5E-34 3.2E-38 204.3 19.5 173 15-201 3-188 (195)
50 2g6b_A RAS-related protein RAB 100.0 2.1E-33 7.2E-38 200.3 20.8 168 20-201 7-177 (180)
51 4dsu_A GTPase KRAS, isoform 2B 100.0 9.2E-34 3.1E-38 203.6 18.8 164 21-199 2-167 (189)
52 3cpj_B GTP-binding protein YPT 100.0 1.2E-33 4.1E-38 208.7 19.7 168 20-201 10-179 (223)
53 1z0j_A RAB-22, RAS-related pro 100.0 1.4E-33 4.8E-38 199.3 19.0 164 20-197 3-168 (170)
54 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.7E-33 9.1E-38 199.3 20.1 167 20-200 4-176 (177)
55 1kao_A RAP2A; GTP-binding prot 100.0 6.8E-34 2.3E-38 200.1 16.8 163 22-198 2-166 (167)
56 1ek0_A Protein (GTP-binding pr 100.0 9.2E-34 3.2E-38 200.1 17.5 165 22-197 2-168 (170)
57 1x3s_A RAS-related protein RAB 100.0 1.9E-33 6.4E-38 203.0 19.4 167 19-200 11-180 (195)
58 1g16_A RAS-related protein SEC 100.0 1.1E-33 3.8E-38 199.8 17.5 165 22-201 2-168 (170)
59 2atv_A RERG, RAS-like estrogen 100.0 8.6E-34 2.9E-38 205.4 17.2 170 16-200 21-193 (196)
60 1ky3_A GTP-binding protein YPT 100.0 1.6E-33 5.5E-38 201.1 18.4 170 20-201 5-181 (182)
61 2hxs_A RAB-26, RAS-related pro 100.0 4.1E-34 1.4E-38 203.7 15.1 168 20-201 3-176 (178)
62 2fg5_A RAB-22B, RAS-related pr 100.0 1E-33 3.6E-38 204.3 17.4 167 19-199 19-187 (192)
63 1z06_A RAS-related protein RAB 100.0 1.6E-33 5.5E-38 202.8 18.1 166 18-197 15-187 (189)
64 2p5s_A RAS and EF-hand domain 100.0 7.2E-34 2.5E-38 206.3 16.3 175 16-198 21-197 (199)
65 3cbq_A GTP-binding protein REM 100.0 8.9E-34 3E-38 205.3 16.1 169 18-200 18-190 (195)
66 3q85_A GTP-binding protein REM 100.0 2.3E-33 8E-38 198.1 17.6 163 23-199 2-168 (169)
67 2f7s_A C25KG, RAS-related prot 100.0 5.5E-34 1.9E-38 209.5 14.0 173 13-199 15-200 (217)
68 2y8e_A RAB-protein 6, GH09086P 100.0 1.9E-33 6.6E-38 200.2 16.2 165 20-198 11-177 (179)
69 1vg8_A RAS-related protein RAB 100.0 1.1E-32 3.7E-37 201.0 19.1 165 20-198 5-175 (207)
70 2yc2_C IFT27, small RAB-relate 100.0 1.9E-33 6.4E-38 205.0 14.6 168 20-201 17-195 (208)
71 2ce2_X GTPase HRAS; signaling 100.0 1.1E-32 3.6E-37 193.7 17.6 162 22-198 2-165 (166)
72 2erx_A GTP-binding protein DI- 100.0 2.3E-33 8E-38 198.4 14.3 163 22-198 2-167 (172)
73 3t1o_A Gliding protein MGLA; G 100.0 1.6E-33 5.5E-38 203.7 13.4 170 18-203 9-197 (198)
74 3clv_A RAB5 protein, putative; 100.0 2.3E-32 7.8E-37 198.6 19.1 165 20-200 4-206 (208)
75 3cph_A RAS-related protein SEC 100.0 2.6E-32 8.8E-37 199.8 19.3 167 19-200 16-184 (213)
76 2wkq_A NPH1-1, RAS-related C3 100.0 4.2E-32 1.4E-36 211.2 21.0 179 21-199 153-331 (332)
77 2cjw_A GTP-binding protein GEM 100.0 1.1E-31 3.6E-36 193.9 19.1 165 21-199 4-173 (192)
78 2gf0_A GTP-binding protein DI- 100.0 1.2E-32 4.1E-37 199.5 13.9 163 21-198 6-171 (199)
79 4bas_A ADP-ribosylation factor 100.0 5.3E-32 1.8E-36 196.1 16.7 172 18-203 12-194 (199)
80 3th5_A RAS-related C3 botulinu 100.0 4.8E-35 1.6E-39 213.3 0.0 177 20-196 27-203 (204)
81 3gj0_A GTP-binding nuclear pro 100.0 5.9E-33 2E-37 204.6 10.9 169 17-201 9-178 (221)
82 3l0i_B RAS-related protein RAB 100.0 5.2E-34 1.8E-38 207.1 4.9 165 20-198 30-196 (199)
83 4djt_A GTP-binding nuclear pro 100.0 2.2E-32 7.4E-37 201.1 12.1 168 20-201 8-178 (218)
84 2h17_A ADP-ribosylation factor 100.0 2.8E-31 9.5E-36 189.8 16.1 166 10-195 8-180 (181)
85 1zd9_A ADP-ribosylation factor 100.0 3.6E-31 1.2E-35 190.4 16.6 169 17-199 16-186 (188)
86 1f6b_A SAR1; gtpases, N-termin 100.0 3.8E-31 1.3E-35 191.9 16.5 156 21-195 23-196 (198)
87 2h57_A ADP-ribosylation factor 100.0 4.5E-31 1.6E-35 190.1 16.0 163 18-198 16-187 (190)
88 3llu_A RAS-related GTP-binding 100.0 8.1E-32 2.8E-36 195.1 11.9 171 15-196 12-195 (196)
89 1m2o_B GTP-binding protein SAR 100.0 1.5E-30 5.3E-35 187.5 17.8 156 21-195 21-189 (190)
90 1upt_A ARL1, ADP-ribosylation 100.0 1.4E-30 4.7E-35 184.1 16.5 164 21-199 5-170 (171)
91 1r8s_A ADP-ribosylation factor 100.0 2.7E-31 9.2E-36 186.7 11.5 160 24-198 1-162 (164)
92 1zj6_A ADP-ribosylation factor 100.0 2.5E-30 8.6E-35 185.8 16.8 161 21-201 14-181 (187)
93 1ksh_A ARF-like protein 2; sma 100.0 5.3E-30 1.8E-34 183.8 18.2 159 21-199 16-181 (186)
94 1moz_A ARL1, ADP-ribosylation 100.0 2.8E-30 9.6E-35 184.6 15.4 161 21-200 16-182 (183)
95 2f9l_A RAB11B, member RAS onco 100.0 2.1E-29 7.2E-34 182.8 19.9 165 21-199 3-169 (199)
96 2x77_A ADP-ribosylation factor 100.0 1.5E-30 5.1E-35 187.2 13.4 165 21-200 20-186 (189)
97 1fzq_A ADP-ribosylation factor 100.0 2E-30 6.8E-35 185.5 12.9 159 21-199 14-179 (181)
98 2b6h_A ADP-ribosylation factor 100.0 5.9E-31 2E-35 190.0 9.5 164 19-197 25-190 (192)
99 2zej_A Dardarin, leucine-rich 100.0 5E-31 1.7E-35 189.1 8.5 170 23-202 2-182 (184)
100 1oix_A RAS-related protein RAB 100.0 8E-29 2.7E-33 178.7 19.2 164 19-196 25-190 (191)
101 3c5h_A Glucocorticoid receptor 100.0 1.5E-29 5.1E-34 190.3 13.0 163 19-197 15-254 (255)
102 2lkc_A Translation initiation 100.0 4.7E-28 1.6E-32 172.2 19.6 161 20-201 5-174 (178)
103 2fh5_B SR-beta, signal recogni 100.0 2.8E-29 9.7E-34 183.9 12.7 173 21-195 5-213 (214)
104 3o47_A ADP-ribosylation factor 100.0 1.1E-28 3.6E-33 191.8 12.9 166 20-199 162-328 (329)
105 2wji_A Ferrous iron transport 100.0 3.5E-28 1.2E-32 171.3 14.2 153 22-196 2-163 (165)
106 3r7w_A Gtpase1, GTP-binding pr 100.0 2.4E-28 8.3E-33 188.2 13.5 167 22-198 2-181 (307)
107 3r7w_B Gtpase2, GTP-binding pr 100.0 2.6E-29 8.7E-34 192.5 6.4 163 25-199 1-175 (331)
108 2qu8_A Putative nucleolar GTP- 100.0 1.6E-27 5.6E-32 176.3 15.9 165 21-200 27-207 (228)
109 3lvq_E ARF-GAP with SH3 domain 99.9 5.4E-27 1.8E-31 191.8 17.0 164 19-201 318-487 (497)
110 1svi_A GTP-binding protein YSX 99.9 2.2E-27 7.5E-32 171.3 13.0 162 19-197 19-194 (195)
111 3pqc_A Probable GTP-binding pr 99.9 3.3E-27 1.1E-31 170.1 13.2 163 19-198 19-194 (195)
112 2dyk_A GTP-binding protein; GT 99.9 5.4E-27 1.8E-31 164.0 12.7 150 24-196 2-160 (161)
113 2cxx_A Probable GTP-binding pr 99.9 2.1E-27 7.2E-32 170.5 10.3 159 24-202 2-188 (190)
114 2wjg_A FEOB, ferrous iron tran 99.9 5E-27 1.7E-31 168.5 11.1 159 20-200 4-171 (188)
115 3dpu_A RAB family protein; roc 99.9 1.6E-27 5.4E-32 196.4 8.5 164 19-199 37-209 (535)
116 2gj8_A MNME, tRNA modification 99.9 2.2E-26 7.4E-31 163.2 11.5 153 22-198 3-166 (172)
117 3iev_A GTP-binding protein ERA 99.9 1.2E-25 4E-30 173.3 16.4 164 19-198 6-182 (308)
118 3a1s_A Iron(II) transport prot 99.9 8.5E-26 2.9E-30 169.9 14.2 155 21-197 3-166 (258)
119 4dhe_A Probable GTP-binding pr 99.9 9.1E-26 3.1E-30 166.2 10.8 168 18-199 24-212 (223)
120 3b1v_A Ferrous iron uptake tra 99.9 2.5E-25 8.4E-30 168.3 11.9 151 23-197 3-163 (272)
121 3iby_A Ferrous iron transport 99.9 1.9E-25 6.3E-30 167.8 8.7 150 24-195 2-164 (256)
122 1wf3_A GTP-binding protein; GT 99.9 2.5E-24 8.7E-29 165.1 14.7 158 21-197 5-172 (301)
123 3gee_A MNME, tRNA modification 99.9 2.1E-24 7E-29 174.5 14.1 157 21-197 231-397 (476)
124 3k53_A Ferrous iron transport 99.9 1.5E-24 5E-29 164.4 12.2 157 22-199 2-167 (271)
125 4dcu_A GTP-binding protein ENG 99.9 1.9E-24 6.6E-29 174.8 13.4 164 20-201 192-372 (456)
126 3i8s_A Ferrous iron transport 99.9 3.2E-25 1.1E-29 168.2 8.0 154 22-197 2-168 (274)
127 1nrj_B SR-beta, signal recogni 99.9 1.5E-25 5.2E-30 164.5 5.4 151 17-183 6-169 (218)
128 2hjg_A GTP-binding protein ENG 99.9 1.6E-24 5.5E-29 174.3 11.7 162 21-200 173-351 (436)
129 3qq5_A Small GTP-binding prote 99.9 1.7E-24 5.9E-29 172.4 6.7 158 19-198 30-196 (423)
130 1mky_A Probable GTP-binding pr 99.9 4.9E-23 1.7E-27 165.8 14.9 154 24-199 2-167 (439)
131 2e87_A Hypothetical protein PH 99.9 1.4E-22 4.8E-27 159.1 17.0 161 21-199 165-337 (357)
132 1xzp_A Probable tRNA modificat 99.9 2.2E-23 7.5E-28 168.7 12.2 151 23-197 243-404 (482)
133 2xtz_A Guanine nucleotide-bind 99.9 7.3E-23 2.5E-27 159.7 13.5 134 69-203 181-350 (354)
134 1cip_A Protein (guanine nucleo 99.9 1.3E-22 4.4E-27 158.3 14.2 133 70-203 192-349 (353)
135 1wb1_A Translation elongation 99.9 2E-22 6.9E-27 163.6 14.7 162 20-197 16-188 (482)
136 3sjy_A Translation initiation 99.9 1.8E-22 6.3E-27 160.9 13.6 167 20-198 5-192 (403)
137 3izy_P Translation initiation 99.9 4.9E-24 1.7E-28 173.9 4.1 159 22-197 3-167 (537)
138 3ohm_A Guanine nucleotide-bind 99.9 2.1E-22 7.1E-27 155.1 12.9 131 71-203 167-323 (327)
139 1ega_A Protein (GTP-binding pr 99.9 3.4E-22 1.1E-26 153.4 14.0 157 21-196 6-173 (301)
140 2xtp_A GTPase IMAP family memb 99.9 2E-22 6.7E-27 151.8 12.1 170 19-199 18-209 (260)
141 1lnz_A SPO0B-associated GTP-bi 99.9 6.2E-23 2.1E-27 159.5 9.0 159 25-201 160-333 (342)
142 3geh_A MNME, tRNA modification 99.9 1.8E-22 6.2E-27 162.6 11.7 154 21-199 222-385 (462)
143 1mky_A Probable GTP-binding pr 99.9 2E-21 6.8E-26 156.5 16.9 161 21-199 178-356 (439)
144 3lxx_A GTPase IMAP family memb 99.9 2.2E-21 7.6E-26 144.3 15.7 168 19-198 25-214 (239)
145 1s0u_A EIF-2-gamma, translatio 99.9 2E-21 6.9E-26 155.1 16.3 165 21-198 6-198 (408)
146 1azs_C GS-alpha; complex (lyas 99.9 1.3E-21 4.6E-26 154.2 14.2 130 71-201 217-388 (402)
147 4fid_A G protein alpha subunit 99.9 1.8E-21 6.1E-26 150.4 12.4 129 70-198 160-328 (340)
148 2hjg_A GTP-binding protein ENG 99.9 1.9E-22 6.5E-27 162.3 6.7 152 24-198 4-165 (436)
149 1kk1_A EIF2gamma; initiation o 99.9 5.6E-21 1.9E-25 152.6 14.9 166 20-198 7-200 (410)
150 3j2k_7 ERF3, eukaryotic polype 99.9 6.8E-21 2.3E-25 153.1 15.0 163 19-190 13-217 (439)
151 2qtf_A Protein HFLX, GTP-bindi 99.9 2.2E-20 7.5E-25 146.5 17.4 162 24-200 179-356 (364)
152 2ywe_A GTP-binding protein LEP 99.9 4.4E-21 1.5E-25 158.4 13.6 160 21-198 4-184 (600)
153 3cb4_D GTP-binding protein LEP 99.9 2.3E-21 7.7E-26 160.3 11.7 159 22-198 3-182 (599)
154 2c78_A Elongation factor TU-A; 99.9 3.2E-21 1.1E-25 153.8 11.1 164 20-196 8-210 (405)
155 3lxw_A GTPase IMAP family memb 99.9 1.3E-20 4.6E-25 140.7 13.8 168 19-198 17-208 (247)
156 1g7s_A Translation initiation 99.9 1.1E-20 3.7E-25 156.4 14.2 170 21-197 3-217 (594)
157 2qag_A Septin-2, protein NEDD5 99.8 2.4E-22 8.2E-27 157.8 3.7 163 20-199 34-234 (361)
158 1zo1_I IF2, translation initia 99.8 3.1E-22 1.1E-26 162.0 4.3 161 21-195 2-164 (501)
159 2ged_A SR-beta, signal recogni 99.8 1.8E-21 6.2E-26 140.0 7.8 115 20-143 45-172 (193)
160 3t5d_A Septin-7; GTP-binding p 99.8 1.5E-21 5.1E-26 148.1 7.6 160 21-195 6-201 (274)
161 3tr5_A RF-3, peptide chain rel 99.8 4.3E-21 1.5E-25 157.0 10.6 117 21-143 11-150 (528)
162 3p26_A Elongation factor 1 alp 99.8 4.6E-21 1.6E-25 156.0 10.0 159 20-187 30-227 (483)
163 1d2e_A Elongation factor TU (E 99.8 6.3E-21 2.1E-25 151.7 9.9 163 22-197 2-194 (397)
164 1zun_B Sulfate adenylate trans 99.8 1.1E-20 3.7E-25 152.0 11.3 159 19-189 20-215 (434)
165 4dcu_A GTP-binding protein ENG 99.8 9.4E-22 3.2E-26 159.1 4.9 159 18-198 18-185 (456)
166 1pui_A ENGB, probable GTP-bind 99.8 4.8E-20 1.7E-24 134.2 12.6 164 18-198 21-199 (210)
167 1jny_A EF-1-alpha, elongation 99.8 1.9E-20 6.4E-25 150.6 10.0 161 21-190 4-205 (435)
168 2elf_A Protein translation elo 99.8 2.6E-20 8.7E-25 146.5 10.3 148 25-197 23-179 (370)
169 3avx_A Elongation factor TS, e 99.8 7.3E-20 2.5E-24 158.5 12.0 166 19-197 292-485 (1289)
170 2aka_B Dynamin-1; fusion prote 99.8 1.4E-20 4.9E-25 144.2 6.8 160 21-195 24-250 (299)
171 1f60_A Elongation factor EEF1A 99.8 1.7E-19 5.7E-24 145.8 13.3 157 21-188 5-202 (458)
172 3izq_1 HBS1P, elongation facto 99.8 2.4E-19 8.3E-24 149.1 14.1 158 20-188 164-362 (611)
173 1r5b_A Eukaryotic peptide chai 99.8 2.4E-20 8.3E-25 151.0 7.2 159 19-189 39-243 (467)
174 3mca_A HBS1, elongation factor 99.8 2.6E-20 8.7E-25 154.5 7.1 158 19-186 173-371 (592)
175 1u0l_A Probable GTPase ENGC; p 99.8 2.3E-20 8E-25 143.2 5.8 133 38-193 32-168 (301)
176 3def_A T7I23.11 protein; chlor 99.8 4E-19 1.4E-23 133.9 11.4 119 21-142 34-166 (262)
177 2dy1_A Elongation factor G; tr 99.8 1.4E-18 4.8E-23 146.0 14.4 117 20-140 6-139 (665)
178 1zcb_A G alpha I/13; GTP-bindi 99.8 1.7E-18 5.9E-23 135.5 13.0 133 64-200 196-355 (362)
179 2qnr_A Septin-2, protein NEDD5 99.8 6.9E-20 2.3E-24 140.5 4.8 164 20-199 15-215 (301)
180 2h5e_A Peptide chain release f 99.8 3.5E-18 1.2E-22 139.9 13.8 120 21-144 11-151 (529)
181 2j69_A Bacterial dynamin-like 99.8 2.6E-18 8.7E-23 145.0 12.7 175 21-198 67-325 (695)
182 1h65_A Chloroplast outer envel 99.8 3.7E-18 1.3E-22 129.1 12.4 120 21-143 37-170 (270)
183 2qag_C Septin-7; cell cycle, c 99.8 2.9E-18 9.8E-23 136.4 9.8 161 19-195 27-224 (418)
184 1udx_A The GTP-binding protein 99.8 8.3E-18 2.8E-22 133.6 12.3 159 24-200 158-327 (416)
185 1dar_A EF-G, elongation factor 99.7 2.6E-17 8.9E-22 138.8 15.2 117 20-143 9-145 (691)
186 3t34_A Dynamin-related protein 99.7 1.7E-18 5.9E-23 136.1 5.4 155 22-192 33-255 (360)
187 2xex_A Elongation factor G; GT 99.7 8.6E-17 2.9E-21 135.7 15.7 118 20-143 7-143 (693)
188 1jwy_B Dynamin A GTPase domain 99.7 1.9E-18 6.5E-23 133.4 4.9 112 71-198 131-262 (315)
189 2rdo_7 EF-G, elongation factor 99.7 1.2E-16 4.2E-21 134.9 15.5 120 20-143 7-150 (704)
190 1wxq_A GTP-binding protein; st 99.7 7.5E-17 2.6E-21 127.8 10.6 84 24-107 1-114 (397)
191 2wsm_A Hydrogenase expression/ 99.7 7.8E-17 2.7E-21 118.1 9.6 155 22-199 29-215 (221)
192 2x2e_A Dynamin-1; nitration, h 99.7 4E-18 1.4E-22 133.6 1.3 159 21-194 29-254 (353)
193 2hf9_A Probable hydrogenase ni 99.7 2.7E-18 9.3E-23 126.4 -1.6 155 21-198 36-224 (226)
194 3p32_A Probable GTPase RV1496/ 99.6 1.5E-16 5.3E-21 124.6 6.3 107 71-198 172-284 (355)
195 1n0u_A EF-2, elongation factor 99.6 5.5E-16 1.9E-20 133.3 9.2 118 20-141 16-164 (842)
196 1yrb_A ATP(GTP)binding protein 99.6 1.6E-15 5.3E-20 114.0 10.0 126 71-199 109-258 (262)
197 2qpt_A EH domain-containing pr 99.6 4E-16 1.4E-20 128.4 6.9 119 20-143 62-234 (550)
198 1jal_A YCHF protein; nucleotid 99.6 2.1E-14 7.2E-19 111.9 16.0 84 23-106 2-108 (363)
199 3vqt_A RF-3, peptide chain rel 99.6 7.8E-15 2.7E-19 120.7 11.2 117 21-144 29-169 (548)
200 2www_A Methylmalonic aciduria 99.6 9.1E-16 3.1E-20 119.9 4.1 105 71-196 167-277 (349)
201 2p67_A LAO/AO transport system 99.5 2.6E-15 8.8E-20 117.1 4.6 106 71-197 149-260 (341)
202 2dby_A GTP-binding protein; GD 99.5 3.5E-14 1.2E-18 111.2 10.9 82 24-106 2-111 (368)
203 2yv5_A YJEQ protein; hydrolase 99.5 1.5E-13 5.1E-18 105.3 10.1 97 81-193 66-164 (302)
204 3l82_B F-box only protein 4; T 99.5 1.5E-14 5.2E-19 103.2 3.8 110 78-199 109-224 (227)
205 3j25_A Tetracycline resistance 99.5 3.3E-14 1.1E-18 119.1 6.4 116 25-144 4-136 (638)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 5.6E-14 1.9E-18 118.5 7.4 160 21-195 49-275 (772)
207 4a9a_A Ribosome-interacting GT 99.5 2.6E-13 8.8E-18 106.3 10.6 118 18-140 67-195 (376)
208 4fn5_A EF-G 1, elongation fact 99.4 2.4E-12 8.3E-17 109.1 13.1 119 21-143 11-153 (709)
209 3l2o_B F-box only protein 4; s 99.3 3.6E-13 1.2E-17 100.7 3.5 110 78-199 194-309 (312)
210 2qm8_A GTPase/ATPase; G protei 99.3 1.7E-11 5.7E-16 95.3 12.9 104 71-197 148-260 (337)
211 2ohf_A Protein OLA1, GTP-bindi 99.2 7.1E-12 2.4E-16 98.6 4.3 91 19-109 18-131 (396)
212 3h2y_A GTPase family protein; 99.1 1.2E-10 4E-15 91.6 7.4 102 80-196 55-158 (368)
213 3ec1_A YQEH GTPase; atnos1, at 99.0 4.5E-10 1.5E-14 88.3 6.3 102 80-196 57-160 (369)
214 2qag_B Septin-6, protein NEDD5 98.9 6E-09 2E-13 82.8 9.9 117 22-143 41-192 (427)
215 3sop_A Neuronal-specific septi 98.9 1.3E-08 4.4E-13 76.6 10.0 116 23-143 2-156 (270)
216 3ec1_A YQEH GTPase; atnos1, at 98.9 2.9E-10 1E-14 89.4 1.0 139 23-184 162-317 (369)
217 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 4.4E-09 1.5E-13 82.9 7.1 88 19-106 16-127 (392)
218 1tq4_A IIGP1, interferon-induc 98.8 8.2E-08 2.8E-12 76.2 14.0 166 22-199 68-254 (413)
219 3h2y_A GTPase family protein; 98.8 2.2E-10 7.6E-15 90.0 -1.5 114 23-143 160-289 (368)
220 1puj_A YLQF, conserved hypothe 98.8 8.4E-09 2.9E-13 78.1 6.6 102 75-198 3-106 (282)
221 2j37_W Signal recognition part 98.8 3.8E-09 1.3E-13 85.9 4.9 151 21-195 99-310 (504)
222 1puj_A YLQF, conserved hypothe 98.5 2.2E-07 7.4E-12 70.4 5.8 58 21-82 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.4 1.2E-07 4.3E-12 70.9 4.0 56 24-83 100-156 (262)
224 1t9h_A YLOQ, probable GTPase E 98.3 4.7E-07 1.6E-11 69.1 4.7 93 86-191 78-170 (307)
225 3dm5_A SRP54, signal recogniti 98.3 3.1E-06 1.1E-10 67.6 8.9 66 71-142 183-254 (443)
226 2v3c_C SRP54, signal recogniti 98.3 4.2E-07 1.4E-11 72.7 3.7 64 71-141 181-252 (432)
227 3cnl_A YLQF, putative uncharac 98.3 3.7E-07 1.3E-11 68.4 3.0 93 78-194 4-97 (262)
228 1f5n_A Interferon-induced guan 98.2 1.6E-06 5.4E-11 71.8 6.2 63 20-83 35-103 (592)
229 1bif_A 6-phosphofructo-2-kinas 98.1 7.6E-08 2.6E-12 78.0 -3.7 109 21-134 37-156 (469)
230 3szr_A Interferon-induced GTP- 98.0 5.5E-06 1.9E-10 69.2 5.2 23 25-47 47-69 (608)
231 3kl4_A SRP54, signal recogniti 98.0 7.9E-06 2.7E-10 65.2 5.1 65 71-141 180-252 (433)
232 2rcn_A Probable GTPase ENGC; Y 97.9 9.3E-05 3.2E-09 57.6 9.9 87 91-192 127-213 (358)
233 1j8m_F SRP54, signal recogniti 97.9 1.2E-05 4.1E-10 61.2 4.8 91 71-187 181-280 (297)
234 3q5d_A Atlastin-1; G protein, 97.6 9.3E-05 3.2E-09 59.3 5.4 26 20-45 64-89 (447)
235 1ye8_A Protein THEP1, hypothet 97.5 5.3E-05 1.8E-09 53.2 3.2 23 24-46 1-23 (178)
236 1kgd_A CASK, peripheral plasma 97.3 0.00012 4.2E-09 51.3 3.1 22 25-46 7-28 (180)
237 1lvg_A Guanylate kinase, GMP k 97.3 0.00014 4.9E-09 51.8 3.1 21 25-45 6-26 (198)
238 4gp7_A Metallophosphoesterase; 97.3 0.00014 4.6E-09 50.7 2.7 20 25-44 11-30 (171)
239 3a00_A Guanylate kinase, GMP k 97.2 0.00018 6.3E-09 50.7 3.0 20 26-45 4-23 (186)
240 1zp6_A Hypothetical protein AT 97.2 0.00021 7.3E-09 50.3 3.2 23 24-46 10-32 (191)
241 3tr0_A Guanylate kinase, GMP k 97.2 0.0002 6.8E-09 51.0 3.0 22 25-46 9-30 (205)
242 1znw_A Guanylate kinase, GMP k 97.2 0.00022 7.5E-09 51.2 3.0 22 25-46 22-43 (207)
243 1s96_A Guanylate kinase, GMP k 97.2 0.00023 7.7E-09 51.7 3.0 23 24-46 17-39 (219)
244 1htw_A HI0065; nucleotide-bind 97.1 0.00028 9.6E-09 48.5 3.0 24 24-47 34-57 (158)
245 1z6g_A Guanylate kinase; struc 97.1 0.00028 9.5E-09 51.1 3.0 22 25-46 25-46 (218)
246 3ney_A 55 kDa erythrocyte memb 97.1 0.0003 1E-08 50.1 3.1 23 24-46 20-42 (197)
247 3c8u_A Fructokinase; YP_612366 97.1 0.00033 1.1E-08 50.2 3.3 25 21-45 20-44 (208)
248 3tau_A Guanylate kinase, GMP k 97.1 0.00029 1E-08 50.6 3.0 22 25-46 10-31 (208)
249 2xxa_A Signal recognition part 97.1 0.0015 5.1E-08 52.3 7.4 64 71-141 184-254 (433)
250 1ex7_A Guanylate kinase; subst 97.1 0.00033 1.1E-08 49.4 3.1 21 26-46 4-24 (186)
251 1ly1_A Polynucleotide kinase; 97.1 0.00042 1.4E-08 48.1 3.6 22 24-45 3-24 (181)
252 1t9h_A YLOQ, probable GTPase E 97.0 0.00017 6E-09 54.9 1.6 24 24-47 174-197 (307)
253 3tif_A Uncharacterized ABC tra 97.0 0.00033 1.1E-08 51.4 3.0 23 25-47 33-55 (235)
254 2bdt_A BH3686; alpha-beta prot 97.0 0.00037 1.3E-08 49.1 3.0 21 25-45 4-24 (189)
255 1kag_A SKI, shikimate kinase I 97.0 0.00038 1.3E-08 48.1 3.0 23 24-46 5-27 (173)
256 1ukz_A Uridylate kinase; trans 97.0 0.00056 1.9E-08 48.7 4.0 25 21-45 13-37 (203)
257 2bbw_A Adenylate kinase 4, AK4 97.0 0.00045 1.5E-08 50.9 3.4 22 23-44 27-48 (246)
258 3fb4_A Adenylate kinase; psych 97.0 0.00042 1.4E-08 49.8 3.1 22 24-45 1-22 (216)
259 3lw7_A Adenylate kinase relate 97.0 0.00045 1.5E-08 47.6 3.2 20 24-43 2-21 (179)
260 2qor_A Guanylate kinase; phosp 97.0 0.00042 1.4E-08 49.5 3.0 25 22-46 11-35 (204)
261 3kb2_A SPBC2 prophage-derived 97.0 0.00047 1.6E-08 47.5 3.2 21 25-45 3-23 (173)
262 2cdn_A Adenylate kinase; phosp 97.0 0.00053 1.8E-08 48.8 3.5 26 20-45 17-42 (201)
263 3dl0_A Adenylate kinase; phosp 97.0 0.00045 1.5E-08 49.7 3.1 22 24-45 1-22 (216)
264 2pcj_A ABC transporter, lipopr 97.0 0.00038 1.3E-08 50.6 2.8 23 25-47 32-54 (224)
265 2onk_A Molybdate/tungstate ABC 97.0 0.00051 1.7E-08 50.6 3.4 23 25-47 26-48 (240)
266 4eun_A Thermoresistant glucoki 97.0 0.00045 1.5E-08 49.2 3.0 23 23-45 29-51 (200)
267 2j41_A Guanylate kinase; GMP, 97.0 0.00044 1.5E-08 49.2 3.0 24 24-47 7-30 (207)
268 1y63_A LMAJ004144AAA protein; 97.0 0.00056 1.9E-08 48.0 3.4 25 22-46 9-33 (184)
269 3asz_A Uridine kinase; cytidin 96.9 0.00051 1.7E-08 49.2 3.2 24 22-45 5-28 (211)
270 1sgw_A Putative ABC transporte 96.9 0.00048 1.7E-08 49.7 3.1 23 25-47 37-59 (214)
271 2i3b_A HCR-ntpase, human cance 96.9 0.00043 1.5E-08 49.0 2.7 21 25-45 3-23 (189)
272 3gfo_A Cobalt import ATP-bindi 96.9 0.00048 1.6E-08 51.7 3.1 23 25-47 36-58 (275)
273 3sr0_A Adenylate kinase; phosp 96.9 0.00053 1.8E-08 49.2 3.2 22 24-45 1-22 (206)
274 1b0u_A Histidine permease; ABC 96.9 0.00048 1.7E-08 51.3 3.1 23 25-47 34-56 (262)
275 1sxj_E Activator 1 40 kDa subu 96.9 0.0026 8.8E-08 49.2 7.3 20 26-45 39-58 (354)
276 2cbz_A Multidrug resistance-as 96.9 0.00055 1.9E-08 50.2 3.3 22 25-46 33-54 (237)
277 1knq_A Gluconate kinase; ALFA/ 96.9 0.00073 2.5E-08 46.9 3.6 22 24-45 9-30 (175)
278 1kht_A Adenylate kinase; phosp 96.9 0.00059 2E-08 47.9 3.2 22 24-45 4-25 (192)
279 1mv5_A LMRA, multidrug resista 96.9 0.00059 2E-08 50.3 3.3 22 25-46 30-51 (243)
280 2rcn_A Probable GTPase ENGC; Y 96.9 0.00059 2E-08 53.1 3.4 23 25-47 217-239 (358)
281 2pze_A Cystic fibrosis transme 96.9 0.00061 2.1E-08 49.7 3.3 23 25-47 36-58 (229)
282 1tev_A UMP-CMP kinase; ploop, 96.9 0.0007 2.4E-08 47.6 3.5 23 23-45 3-25 (196)
283 2ff7_A Alpha-hemolysin translo 96.9 0.0006 2.1E-08 50.4 3.3 23 25-47 37-59 (247)
284 3cm0_A Adenylate kinase; ATP-b 96.9 0.00075 2.6E-08 47.2 3.6 23 23-45 4-26 (186)
285 1g6h_A High-affinity branched- 96.9 0.0006 2.1E-08 50.7 3.3 23 25-47 35-57 (257)
286 4g1u_C Hemin import ATP-bindin 96.9 0.0006 2.1E-08 51.0 3.3 23 25-47 39-61 (266)
287 3ec2_A DNA replication protein 96.9 0.00047 1.6E-08 48.1 2.5 24 23-46 38-61 (180)
288 1qhx_A CPT, protein (chloramph 96.9 0.00069 2.3E-08 47.1 3.4 23 24-46 4-26 (178)
289 2olj_A Amino acid ABC transpor 96.9 0.00063 2.2E-08 50.8 3.3 22 25-46 52-73 (263)
290 3b85_A Phosphate starvation-in 96.9 0.0005 1.7E-08 49.4 2.7 22 25-46 24-45 (208)
291 3tlx_A Adenylate kinase 2; str 96.9 0.00076 2.6E-08 49.6 3.6 25 21-45 27-51 (243)
292 2qi9_C Vitamin B12 import ATP- 96.9 0.00067 2.3E-08 50.2 3.3 23 25-47 28-50 (249)
293 2rhm_A Putative kinase; P-loop 96.9 0.0007 2.4E-08 47.6 3.3 23 23-45 5-27 (193)
294 3t61_A Gluconokinase; PSI-biol 96.9 0.00061 2.1E-08 48.5 3.0 22 24-45 19-40 (202)
295 3vaa_A Shikimate kinase, SK; s 96.9 0.0007 2.4E-08 48.1 3.3 23 23-45 25-47 (199)
296 2jaq_A Deoxyguanosine kinase; 96.9 0.00067 2.3E-08 48.1 3.2 21 25-45 2-22 (205)
297 3iij_A Coilin-interacting nucl 96.9 0.00061 2.1E-08 47.5 2.9 23 23-45 11-33 (180)
298 2plr_A DTMP kinase, probable t 96.9 0.00081 2.8E-08 48.0 3.6 23 23-45 4-26 (213)
299 1ji0_A ABC transporter; ATP bi 96.9 0.00068 2.3E-08 49.9 3.3 23 25-47 34-56 (240)
300 1vpl_A ABC transporter, ATP-bi 96.8 0.0007 2.4E-08 50.3 3.3 23 25-47 43-65 (256)
301 2ihy_A ABC transporter, ATP-bi 96.8 0.00069 2.4E-08 51.0 3.3 23 25-47 49-71 (279)
302 1nks_A Adenylate kinase; therm 96.8 0.00073 2.5E-08 47.4 3.2 21 25-45 3-23 (194)
303 2ghi_A Transport protein; mult 96.8 0.00071 2.4E-08 50.4 3.3 22 25-46 48-69 (260)
304 2if2_A Dephospho-COA kinase; a 96.8 0.00064 2.2E-08 48.4 2.9 22 24-45 2-23 (204)
305 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00076 2.6E-08 49.9 3.4 22 25-46 31-52 (250)
306 2zu0_C Probable ATP-dependent 96.8 0.00077 2.6E-08 50.4 3.4 22 25-46 48-69 (267)
307 1aky_A Adenylate kinase; ATP:A 96.8 0.00076 2.6E-08 48.7 3.3 23 23-45 4-26 (220)
308 1uj2_A Uridine-cytidine kinase 96.8 0.00081 2.8E-08 49.7 3.5 26 20-45 19-44 (252)
309 1e4v_A Adenylate kinase; trans 96.8 0.00067 2.3E-08 48.8 2.9 22 24-45 1-22 (214)
310 2ehv_A Hypothetical protein PH 96.8 0.00073 2.5E-08 49.5 3.1 20 25-44 32-51 (251)
311 2eyu_A Twitching motility prot 96.8 0.00071 2.4E-08 50.4 3.1 22 24-45 26-47 (261)
312 2ixe_A Antigen peptide transpo 96.8 0.00078 2.7E-08 50.5 3.3 23 25-47 47-69 (271)
313 2v9p_A Replication protein E1; 96.8 0.00076 2.6E-08 51.4 3.2 22 24-45 127-148 (305)
314 2nq2_C Hypothetical ABC transp 96.8 0.00081 2.8E-08 49.9 3.3 23 25-47 33-55 (253)
315 1ak2_A Adenylate kinase isoenz 96.8 0.00086 2.9E-08 48.9 3.4 24 22-45 15-38 (233)
316 1jjv_A Dephospho-COA kinase; P 96.8 0.001 3.4E-08 47.5 3.5 22 24-45 3-24 (206)
317 2yz2_A Putative ABC transporte 96.8 0.00087 3E-08 50.1 3.3 22 25-46 35-56 (266)
318 3umf_A Adenylate kinase; rossm 96.8 0.0012 4.1E-08 47.8 3.9 24 22-45 28-51 (217)
319 2pjz_A Hypothetical protein ST 96.8 0.00091 3.1E-08 49.9 3.3 23 25-47 32-54 (263)
320 3uie_A Adenylyl-sulfate kinase 96.7 0.00084 2.9E-08 47.7 3.0 25 21-45 23-47 (200)
321 1np6_A Molybdopterin-guanine d 96.7 0.00093 3.2E-08 46.6 3.0 23 24-46 7-29 (174)
322 1cke_A CK, MSSA, protein (cyti 96.7 0.00098 3.4E-08 48.2 3.2 22 24-45 6-27 (227)
323 2pt5_A Shikimate kinase, SK; a 96.7 0.0011 3.6E-08 45.6 3.2 22 24-45 1-22 (168)
324 1qf9_A UMP/CMP kinase, protein 96.7 0.0012 4.1E-08 46.3 3.6 23 23-45 6-28 (194)
325 1gvn_B Zeta; postsegregational 96.7 0.0011 3.7E-08 50.1 3.4 24 22-45 32-55 (287)
326 3aez_A Pantothenate kinase; tr 96.7 0.0013 4.3E-08 50.4 3.8 26 20-45 87-112 (312)
327 4a74_A DNA repair and recombin 96.7 0.00085 2.9E-08 48.5 2.7 23 25-47 27-49 (231)
328 3lnc_A Guanylate kinase, GMP k 96.7 0.00058 2E-08 49.7 1.8 23 24-46 28-51 (231)
329 3be4_A Adenylate kinase; malar 96.7 0.001 3.5E-08 48.0 3.1 22 24-45 6-27 (217)
330 2vli_A Antibiotic resistance p 96.7 0.00071 2.4E-08 47.2 2.2 23 23-45 5-27 (183)
331 3trf_A Shikimate kinase, SK; a 96.7 0.0011 3.9E-08 46.3 3.2 22 24-45 6-27 (185)
332 1zd8_A GTP:AMP phosphotransfer 96.7 0.001 3.5E-08 48.3 3.0 23 23-45 7-29 (227)
333 2v54_A DTMP kinase, thymidylat 96.7 0.0012 4.2E-08 46.8 3.4 24 23-46 4-27 (204)
334 2xb4_A Adenylate kinase; ATP-b 96.7 0.0011 3.9E-08 48.0 3.2 22 24-45 1-22 (223)
335 1u0l_A Probable GTPase ENGC; p 96.7 0.00096 3.3E-08 50.8 2.9 24 24-47 170-193 (301)
336 1zcb_A G alpha I/13; GTP-bindi 96.6 0.0013 4.3E-08 51.5 3.6 26 19-44 29-54 (362)
337 2yvu_A Probable adenylyl-sulfa 96.6 0.0016 5.5E-08 45.6 3.8 24 22-45 12-35 (186)
338 2kjq_A DNAA-related protein; s 96.6 0.00082 2.8E-08 45.6 2.2 22 25-46 38-59 (149)
339 2yv5_A YJEQ protein; hydrolase 96.6 0.0011 3.7E-08 50.5 3.1 21 24-44 166-186 (302)
340 2qt1_A Nicotinamide riboside k 96.6 0.0015 5E-08 46.7 3.6 25 22-46 20-44 (207)
341 1lw7_A Transcriptional regulat 96.6 0.00092 3.2E-08 52.2 2.7 24 23-46 170-193 (365)
342 2jeo_A Uridine-cytidine kinase 96.6 0.0014 4.8E-08 48.2 3.5 26 20-45 22-47 (245)
343 1via_A Shikimate kinase; struc 96.6 0.001 3.6E-08 46.1 2.7 21 25-45 6-26 (175)
344 2x8a_A Nuclear valosin-contain 96.6 0.0011 3.8E-08 49.7 3.0 21 26-46 47-67 (274)
345 3tqc_A Pantothenate kinase; bi 96.6 0.0016 5.6E-08 49.9 3.8 25 20-44 89-113 (321)
346 2wwf_A Thymidilate kinase, put 96.6 0.0014 4.8E-08 46.8 3.3 24 22-45 9-32 (212)
347 2bbs_A Cystic fibrosis transme 96.6 0.0012 4E-08 50.0 3.0 22 25-46 66-87 (290)
348 1nn5_A Similar to deoxythymidy 96.6 0.0013 4.3E-08 47.1 3.0 24 22-45 8-31 (215)
349 2c95_A Adenylate kinase 1; tra 96.6 0.0012 4.2E-08 46.4 2.9 23 23-45 9-31 (196)
350 2vp4_A Deoxynucleoside kinase; 96.6 0.0016 5.5E-08 47.4 3.5 26 21-46 18-43 (230)
351 1ixz_A ATP-dependent metallopr 96.6 0.0013 4.6E-08 48.4 3.1 21 26-46 52-72 (254)
352 1zak_A Adenylate kinase; ATP:A 96.6 0.001 3.5E-08 48.0 2.4 22 24-45 6-27 (222)
353 4e22_A Cytidylate kinase; P-lo 96.5 0.0015 5.2E-08 48.3 3.3 22 23-44 27-48 (252)
354 3tui_C Methionine import ATP-b 96.5 0.0014 4.8E-08 51.1 3.2 23 25-47 56-78 (366)
355 1jbk_A CLPB protein; beta barr 96.5 0.0015 5.1E-08 45.5 3.0 23 24-46 44-66 (195)
356 2pbr_A DTMP kinase, thymidylat 96.5 0.0016 5.4E-08 45.8 3.2 21 25-45 2-22 (195)
357 2p5t_B PEZT; postsegregational 96.5 0.0012 4E-08 48.9 2.6 25 21-45 30-54 (253)
358 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0013 4.4E-08 51.2 2.8 23 25-47 32-54 (359)
359 1uf9_A TT1252 protein; P-loop, 96.5 0.0017 6E-08 45.9 3.3 26 21-46 6-31 (203)
360 3jvv_A Twitching mobility prot 96.5 0.0014 4.8E-08 51.0 3.0 21 25-45 125-145 (356)
361 3nh6_A ATP-binding cassette SU 96.5 0.00096 3.3E-08 50.9 2.0 22 25-46 82-103 (306)
362 1odf_A YGR205W, hypothetical 3 96.5 0.002 6.9E-08 48.7 3.8 24 21-44 29-52 (290)
363 1z47_A CYSA, putative ABC-tran 96.5 0.0015 5.2E-08 50.8 3.1 23 25-47 43-65 (355)
364 2z0h_A DTMP kinase, thymidylat 96.5 0.0017 5.8E-08 45.8 3.2 21 25-45 2-22 (197)
365 2bwj_A Adenylate kinase 5; pho 96.5 0.0013 4.3E-08 46.5 2.5 23 23-45 12-34 (199)
366 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.002 6.8E-08 47.9 3.5 22 24-45 5-26 (260)
367 1rz3_A Hypothetical protein rb 96.5 0.0022 7.5E-08 45.6 3.6 25 21-45 20-44 (201)
368 2yyz_A Sugar ABC transporter, 96.5 0.0016 5.6E-08 50.7 3.1 23 25-47 31-53 (359)
369 2it1_A 362AA long hypothetical 96.5 0.0017 5.8E-08 50.7 3.2 23 25-47 31-53 (362)
370 2ze6_A Isopentenyl transferase 96.4 0.0018 6E-08 48.0 3.1 21 25-45 3-23 (253)
371 1rj9_A FTSY, signal recognitio 96.4 0.0017 5.8E-08 49.5 3.0 21 24-44 103-123 (304)
372 2f1r_A Molybdopterin-guanine d 96.4 0.00076 2.6E-08 46.9 1.0 22 25-46 4-25 (171)
373 3rlf_A Maltose/maltodextrin im 96.4 0.0018 6.1E-08 50.8 3.2 23 25-47 31-53 (381)
374 3b9q_A Chloroplast SRP recepto 96.4 0.0017 5.9E-08 49.4 3.0 24 22-45 99-122 (302)
375 1xjc_A MOBB protein homolog; s 96.4 0.0021 7E-08 44.6 3.1 22 24-45 5-26 (169)
376 1v43_A Sugar-binding transport 96.4 0.0019 6.4E-08 50.6 3.2 23 25-47 39-61 (372)
377 1g29_1 MALK, maltose transport 96.4 0.0018 6.3E-08 50.7 3.1 23 25-47 31-53 (372)
378 1in4_A RUVB, holliday junction 96.4 0.0018 6.3E-08 49.9 3.0 22 25-46 53-74 (334)
379 1iy2_A ATP-dependent metallopr 96.4 0.002 6.7E-08 48.3 3.1 21 26-46 76-96 (278)
380 1sq5_A Pantothenate kinase; P- 96.4 0.0023 7.8E-08 48.8 3.4 24 22-45 79-102 (308)
381 1vht_A Dephospho-COA kinase; s 96.4 0.0026 8.8E-08 45.8 3.6 23 23-45 4-26 (218)
382 2pez_A Bifunctional 3'-phospho 96.4 0.0028 9.4E-08 44.1 3.6 22 24-45 6-27 (179)
383 1e6c_A Shikimate kinase; phosp 96.4 0.0022 7.7E-08 44.1 3.1 21 25-45 4-24 (173)
384 3kta_A Chromosome segregation 96.3 0.0021 7.1E-08 44.8 2.9 21 25-45 28-48 (182)
385 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0022 7.5E-08 46.3 3.0 21 25-45 25-45 (235)
386 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0019 6.4E-08 49.8 2.8 23 25-47 173-195 (330)
387 2ewv_A Twitching motility prot 96.3 0.0023 7.8E-08 50.2 3.2 22 24-45 137-158 (372)
388 4eaq_A DTMP kinase, thymidylat 96.3 0.0033 1.1E-07 45.8 3.8 25 22-46 25-49 (229)
389 2iyv_A Shikimate kinase, SK; t 96.3 0.0024 8.3E-08 44.5 3.0 21 25-45 4-24 (184)
390 2gza_A Type IV secretion syste 96.3 0.002 6.9E-08 50.3 2.8 23 24-46 176-198 (361)
391 3e70_C DPA, signal recognition 96.3 0.0031 1.1E-07 48.6 3.8 25 21-45 127-151 (328)
392 1p9r_A General secretion pathw 96.3 0.0022 7.6E-08 51.0 3.0 22 25-46 169-190 (418)
393 1gtv_A TMK, thymidylate kinase 96.3 0.00081 2.8E-08 48.1 0.4 21 25-45 2-22 (214)
394 3r20_A Cytidylate kinase; stru 96.3 0.0027 9.2E-08 46.4 3.2 25 21-45 7-31 (233)
395 1lv7_A FTSH; alpha/beta domain 96.3 0.0025 8.5E-08 47.1 3.0 21 25-45 47-67 (257)
396 3d31_A Sulfate/molybdate ABC t 96.3 0.0016 5.3E-08 50.6 1.9 23 25-47 28-50 (348)
397 2p65_A Hypothetical protein PF 96.2 0.0021 7.1E-08 44.6 2.4 24 23-46 43-66 (187)
398 3bos_A Putative DNA replicatio 96.2 0.003 1E-07 45.7 3.3 23 23-45 52-74 (242)
399 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0033 1.1E-07 42.6 3.1 20 25-44 25-44 (149)
400 2w58_A DNAI, primosome compone 96.2 0.0029 1E-07 44.8 3.0 23 24-46 55-77 (202)
401 2og2_A Putative signal recogni 96.2 0.0028 9.5E-08 49.4 3.0 24 22-45 156-179 (359)
402 2f6r_A COA synthase, bifunctio 96.2 0.0033 1.1E-07 47.3 3.4 26 20-45 72-97 (281)
403 1zuh_A Shikimate kinase; alpha 96.2 0.0036 1.2E-07 43.0 3.3 22 24-45 8-29 (168)
404 3gd7_A Fusion complex of cysti 96.2 0.003 1E-07 49.8 3.1 22 25-46 49-70 (390)
405 2oap_1 GSPE-2, type II secreti 96.1 0.0027 9.4E-08 51.8 2.9 23 25-47 262-284 (511)
406 1nij_A Hypothetical protein YJ 96.1 0.0022 7.5E-08 49.1 2.2 23 25-47 6-28 (318)
407 1m7g_A Adenylylsulfate kinase; 96.1 0.0042 1.4E-07 44.4 3.5 26 20-45 22-47 (211)
408 1ltq_A Polynucleotide kinase; 96.1 0.004 1.4E-07 47.1 3.6 22 24-45 3-24 (301)
409 2yhs_A FTSY, cell division pro 96.1 0.0032 1.1E-07 51.1 3.1 25 21-45 291-315 (503)
410 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0024 8.3E-08 51.5 2.4 23 24-46 139-161 (460)
411 1oxx_K GLCV, glucose, ABC tran 96.1 0.0015 5.3E-08 50.8 1.2 23 25-47 33-55 (353)
412 1n0w_A DNA repair protein RAD5 96.1 0.0036 1.2E-07 45.6 3.1 22 25-46 26-47 (243)
413 1cr0_A DNA primase/helicase; R 96.1 0.003 1E-07 47.7 2.7 21 25-45 37-57 (296)
414 2obl_A ESCN; ATPase, hydrolase 96.1 0.0034 1.2E-07 48.7 3.0 24 24-47 72-95 (347)
415 2cvh_A DNA repair and recombin 96.1 0.0037 1.3E-07 44.8 3.0 21 25-45 22-42 (220)
416 3n70_A Transport activator; si 96.0 0.0041 1.4E-07 41.8 3.0 25 23-47 24-48 (145)
417 3nwj_A ATSK2; P loop, shikimat 96.0 0.0032 1.1E-07 46.5 2.7 23 23-45 48-70 (250)
418 1njg_A DNA polymerase III subu 96.0 0.004 1.4E-07 44.9 3.0 21 25-45 47-67 (250)
419 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0044 1.5E-07 51.0 3.4 23 25-47 49-71 (538)
420 1tue_A Replication protein E1; 96.0 0.0034 1.2E-07 44.8 2.4 21 25-45 60-80 (212)
421 2chg_A Replication factor C sm 96.0 0.0044 1.5E-07 44.1 3.0 21 25-45 40-60 (226)
422 3h4m_A Proteasome-activating n 95.9 0.0042 1.4E-07 46.5 3.0 24 23-46 51-74 (285)
423 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.0045 1.5E-07 45.6 3.1 22 24-45 40-61 (262)
424 3b9p_A CG5977-PA, isoform A; A 95.9 0.0042 1.4E-07 46.8 3.0 24 23-46 54-77 (297)
425 1svm_A Large T antigen; AAA+ f 95.9 0.0044 1.5E-07 48.6 3.0 23 23-45 169-191 (377)
426 1p5z_B DCK, deoxycytidine kina 95.9 0.0036 1.2E-07 46.5 2.3 26 21-46 22-47 (263)
427 1q3t_A Cytidylate kinase; nucl 95.9 0.0057 1.9E-07 44.6 3.3 26 20-45 13-38 (236)
428 2grj_A Dephospho-COA kinase; T 95.8 0.0065 2.2E-07 43.0 3.4 28 19-46 8-35 (192)
429 3ozx_A RNAse L inhibitor; ATP 95.8 0.0048 1.6E-07 50.8 3.1 23 25-47 27-49 (538)
430 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.0053 1.8E-07 48.0 3.1 19 26-44 26-44 (365)
431 3cf0_A Transitional endoplasmi 95.8 0.005 1.7E-07 46.7 3.0 23 24-46 50-72 (301)
432 3gmt_A Adenylate kinase; ssgci 95.8 0.0062 2.1E-07 44.4 3.2 26 20-45 5-30 (230)
433 3euj_A Chromosome partition pr 95.8 0.0052 1.8E-07 49.7 3.1 22 24-45 30-51 (483)
434 3zvl_A Bifunctional polynucleo 95.8 0.0078 2.7E-07 47.9 4.0 26 21-46 256-281 (416)
435 3t15_A Ribulose bisphosphate c 95.8 0.005 1.7E-07 46.6 2.8 24 23-46 36-59 (293)
436 1l8q_A Chromosomal replication 95.8 0.0054 1.8E-07 46.9 3.0 22 24-45 38-59 (324)
437 3j16_B RLI1P; ribosome recycli 95.7 0.0059 2E-07 51.0 3.2 23 25-47 105-127 (608)
438 3syl_A Protein CBBX; photosynt 95.7 0.007 2.4E-07 45.8 3.3 24 22-45 66-89 (309)
439 2dpy_A FLII, flagellum-specifi 95.7 0.006 2.1E-07 48.9 3.0 23 25-47 159-181 (438)
440 3bk7_A ABC transporter ATP-bin 95.7 0.0067 2.3E-07 50.7 3.3 23 25-47 119-141 (607)
441 1yqt_A RNAse L inhibitor; ATP- 95.7 0.007 2.4E-07 49.8 3.4 23 25-47 314-336 (538)
442 1nlf_A Regulatory protein REPA 95.6 0.0059 2E-07 45.7 2.7 21 25-45 32-52 (279)
443 3b60_A Lipid A export ATP-bind 95.6 0.0061 2.1E-07 50.6 3.0 22 25-46 371-392 (582)
444 3bk7_A ABC transporter ATP-bin 95.6 0.0074 2.5E-07 50.4 3.4 23 25-47 384-406 (607)
445 1d2n_A N-ethylmaleimide-sensit 95.6 0.01 3.5E-07 44.2 3.9 26 21-46 62-87 (272)
446 1ofh_A ATP-dependent HSL prote 95.6 0.0071 2.4E-07 45.6 3.1 23 23-45 50-72 (310)
447 3b5x_A Lipid A export ATP-bind 95.6 0.0071 2.4E-07 50.3 3.3 22 25-46 371-392 (582)
448 2qby_A CDC6 homolog 1, cell di 95.6 0.0063 2.2E-07 47.3 2.8 23 23-45 45-67 (386)
449 3ozx_A RNAse L inhibitor; ATP 95.6 0.0078 2.7E-07 49.5 3.3 23 25-47 296-318 (538)
450 1sxj_C Activator 1 40 kDa subu 95.6 0.0072 2.5E-07 46.6 3.0 22 25-46 48-69 (340)
451 3co5_A Putative two-component 95.5 0.004 1.4E-07 41.7 1.3 23 24-46 28-50 (143)
452 3qks_A DNA double-strand break 95.5 0.0088 3E-07 42.6 3.1 20 25-44 25-44 (203)
453 1fnn_A CDC6P, cell division co 95.5 0.0076 2.6E-07 47.0 3.1 22 25-46 46-67 (389)
454 2dr3_A UPF0273 protein PH0284; 95.5 0.0075 2.6E-07 43.9 2.9 20 25-44 25-44 (247)
455 4ido_A Atlastin-1; GTPase, GTP 95.5 0.038 1.3E-06 44.3 7.0 24 21-44 65-88 (457)
456 2px0_A Flagellar biosynthesis 95.5 0.0071 2.4E-07 45.8 2.7 22 23-44 105-126 (296)
457 3ake_A Cytidylate kinase; CMP 95.5 0.0096 3.3E-07 42.2 3.3 21 25-45 4-24 (208)
458 2qmh_A HPR kinase/phosphorylas 95.5 0.0093 3.2E-07 42.4 3.0 25 23-47 34-58 (205)
459 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.0082 2.8E-07 46.0 3.0 23 24-46 46-68 (322)
460 2iw3_A Elongation factor 3A; a 95.4 0.0096 3.3E-07 52.2 3.6 24 25-48 463-486 (986)
461 2yl4_A ATP-binding cassette SU 95.4 0.0065 2.2E-07 50.6 2.5 22 25-46 372-393 (595)
462 1vma_A Cell division protein F 95.4 0.009 3.1E-07 45.5 3.1 22 23-44 104-125 (306)
463 4fcw_A Chaperone protein CLPB; 95.4 0.013 4.4E-07 44.3 3.9 23 24-46 48-70 (311)
464 3qf4_B Uncharacterized ABC tra 95.4 0.0073 2.5E-07 50.4 2.7 22 25-46 383-404 (598)
465 4b4t_K 26S protease regulatory 95.4 0.0093 3.2E-07 47.5 3.1 22 25-46 208-229 (428)
466 2ocp_A DGK, deoxyguanosine kin 95.4 0.011 3.7E-07 43.2 3.3 23 24-46 3-25 (241)
467 3eie_A Vacuolar protein sortin 95.4 0.009 3.1E-07 45.7 2.9 24 23-46 51-74 (322)
468 3u61_B DNA polymerase accessor 95.4 0.11 3.6E-06 39.6 9.0 45 96-140 105-149 (324)
469 2h92_A Cytidylate kinase; ross 95.3 0.0089 3E-07 42.9 2.7 23 23-45 3-25 (219)
470 1sxj_D Activator 1 41 kDa subu 95.3 0.0096 3.3E-07 45.8 3.0 22 25-46 60-81 (353)
471 2ga8_A Hypothetical 39.9 kDa p 95.3 0.014 4.7E-07 45.3 3.8 22 23-44 24-45 (359)
472 3j16_B RLI1P; ribosome recycli 95.3 0.011 3.8E-07 49.3 3.4 22 26-47 381-402 (608)
473 1pzn_A RAD51, DNA repair and r 95.3 0.0091 3.1E-07 46.3 2.7 24 24-47 132-155 (349)
474 4a82_A Cystic fibrosis transme 95.3 0.0063 2.1E-07 50.6 1.9 21 25-45 369-389 (578)
475 4b4t_M 26S protease regulatory 95.3 0.011 3.6E-07 47.3 3.1 24 23-46 215-238 (434)
476 2r62_A Cell division protease 95.3 0.0046 1.6E-07 45.9 0.9 21 25-45 46-66 (268)
477 3crm_A TRNA delta(2)-isopenten 95.3 0.014 4.8E-07 44.7 3.6 22 24-45 6-27 (323)
478 2v1u_A Cell division control p 95.2 0.009 3.1E-07 46.5 2.6 24 22-45 43-66 (387)
479 4b4t_L 26S protease subunit RP 95.2 0.011 3.9E-07 47.2 3.1 24 23-46 215-238 (437)
480 3v9p_A DTMP kinase, thymidylat 95.2 0.0098 3.3E-07 43.3 2.5 24 22-45 24-47 (227)
481 3uk6_A RUVB-like 2; hexameric 95.2 0.01 3.4E-07 46.1 2.7 23 24-46 71-93 (368)
482 3qf4_A ABC transporter, ATP-bi 95.2 0.0085 2.9E-07 49.8 2.4 22 25-46 371-392 (587)
483 2bjv_A PSP operon transcriptio 95.1 0.013 4.3E-07 43.4 3.0 24 24-47 30-53 (265)
484 2qp9_X Vacuolar protein sortin 95.1 0.012 4.2E-07 45.7 3.0 23 24-46 85-107 (355)
485 2qen_A Walker-type ATPase; unk 95.1 0.013 4.4E-07 44.9 3.1 23 24-46 32-54 (350)
486 3pfi_A Holliday junction ATP-d 95.1 0.012 4.3E-07 45.1 3.0 23 24-46 56-78 (338)
487 4edh_A DTMP kinase, thymidylat 95.1 0.017 5.9E-07 41.5 3.5 24 22-45 5-28 (213)
488 2qgz_A Helicase loader, putati 95.1 0.015 5E-07 44.4 3.3 23 23-45 152-174 (308)
489 2z4s_A Chromosomal replication 95.1 0.013 4.3E-07 47.1 3.0 22 24-45 131-152 (440)
490 1c9k_A COBU, adenosylcobinamid 95.1 0.014 4.8E-07 40.8 2.9 21 26-46 2-22 (180)
491 2dhr_A FTSH; AAA+ protein, hex 95.0 0.013 4.4E-07 47.7 3.0 21 26-46 67-87 (499)
492 4b4t_J 26S protease regulatory 95.0 0.014 4.7E-07 46.1 3.0 23 24-46 183-205 (405)
493 3qkt_A DNA double-strand break 95.0 0.015 5E-07 45.0 3.1 19 26-44 26-44 (339)
494 3m6a_A ATP-dependent protease 95.0 0.013 4.4E-07 48.3 3.0 21 25-45 110-130 (543)
495 2ce7_A Cell division protein F 95.0 0.014 4.7E-07 47.3 3.1 21 25-45 51-71 (476)
496 3d8b_A Fidgetin-like protein 1 95.0 0.014 4.7E-07 45.4 3.0 24 23-46 117-140 (357)
497 3d3q_A TRNA delta(2)-isopenten 95.0 0.014 4.9E-07 45.0 3.0 22 24-45 8-29 (340)
498 3a8t_A Adenylate isopentenyltr 95.0 0.02 7E-07 44.1 3.8 22 24-45 41-62 (339)
499 2qby_B CDC6 homolog 3, cell di 95.0 0.013 4.4E-07 45.7 2.8 22 24-45 46-67 (384)
500 1um8_A ATP-dependent CLP prote 95.0 0.015 5E-07 45.5 3.0 24 23-46 72-95 (376)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8e-41 Score=245.38 Aligned_cols=164 Identities=26% Similarity=0.485 Sum_probs=140.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
+.+.+||+|+|++|+|||||+++|..+.|...+.+|++..+ .+.+.+++..+++.||||+|+++|+.+++.+++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 46779999999999999999999999999999999998766 56788899999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
++|||++++.+|+++. .|+..+.... +++|++|||||+|+...+ .++.++++.+++.+++. |++|
T Consensus 90 ilv~di~~~~Sf~~i~-~~~~~i~~~~~~~~piilVgNK~Dl~~~r------------~V~~~e~~~~a~~~~~~-~~e~ 155 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADKR------------QVSIEEGERKAKELNVM-FIET 155 (216)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCE-EEEE
T ss_pred EEEeecchhHHHHHHH-HHHHHHHHhcCCCCeEEEEeeccchHhcC------------cccHHHHhhHHHHhCCe-eEEE
Confidence 9999999999999998 7888887654 789999999999998765 89999999999999987 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy15714 178 SAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~ 197 (205)
||++|+||+++|+.|++.+.
T Consensus 156 SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 156 SAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp BTTTTBSHHHHHHHHHHHC-
T ss_pred eCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 2
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.9e-37 Score=220.66 Aligned_cols=187 Identities=44% Similarity=0.808 Sum_probs=160.8
Q ss_pred CccccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccC
Q psy15714 12 DKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMS 91 (205)
Q Consensus 12 ~~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 91 (205)
...|......+.+||+++|.+|+|||||++++.++.+...+.+|.+..+...+.+++..+.+.+||+||+++++.++..+
T Consensus 7 ~~~m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 86 (194)
T 2atx_A 7 RSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLS 86 (194)
T ss_dssp --CCSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGG
T ss_pred ccccCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHh
Confidence 34455556678899999999999999999999999998888888887777777888888999999999999999999999
Q ss_pred cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714 92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA 171 (205)
Q Consensus 92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (205)
++.+|++++|||++++.++..+...|+..+....+++|+++|+||+|+...............+.++.+++..+++.++.
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 166 (194)
T 2atx_A 87 YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA 166 (194)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC
Confidence 99999999999999999999987689999988878999999999999987643333333333346788999999999998
Q ss_pred ceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 172 AEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
.+++++||++|+|++++|+++.+.++.
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 569999999999999999999998764
No 3
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=3.5e-37 Score=226.29 Aligned_cols=190 Identities=31% Similarity=0.584 Sum_probs=155.2
Q ss_pred CccccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccC
Q psy15714 12 DKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMS 91 (205)
Q Consensus 12 ~~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 91 (205)
.+..........+||+++|.+|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.|||++|++.|+.++..+
T Consensus 16 ~q~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 95 (214)
T 3q3j_B 16 FQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLC 95 (214)
T ss_dssp -----------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGG
T ss_pred hhccCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHH
Confidence 33344556678899999999999999999999999999888999988887777888889999999999999999999999
Q ss_pred cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714 92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA 171 (205)
Q Consensus 92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (205)
++.+|++|+|||++++.++..+...|+..+....+++|+++|+||+|+...............+.++.+++..+++.+++
T Consensus 96 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 175 (214)
T 3q3j_B 96 YSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175 (214)
T ss_dssp CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence 99999999999999999999955599999999888999999999999987543332223333457889999999999999
Q ss_pred ceEEEcccCCCCC-HHHHHHHHHHHHHhhcc
Q psy15714 172 AEYLECSAKLNEG-LDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 172 ~~~~~~Sa~~~~~-i~~~~~~i~~~~~~~~~ 201 (205)
.+++++||++|.| ++++|+++++.+....+
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 5699999999998 99999999999877644
No 4
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=220.61 Aligned_cols=187 Identities=43% Similarity=0.793 Sum_probs=149.3
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCC
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 95 (205)
........+||+++|.+|+|||||++++.++.+...+.+|++..+...+.+++..+.+.+||+||++.|+.++..++.++
T Consensus 13 ~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 13 AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp -------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred cCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 34556788999999999999999999999999888888888877777788899999999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL 175 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (205)
|++++|||++++.++..+...|+..+....+++|+++|+||+|+...............+.+..+++..+++.++..+++
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 99999999999999999876899999888789999999999999865432222222223467888999999999986699
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 202 (205)
++||++|.|++++|+++.+.+.+.+.+
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHHhccccc
Confidence 999999999999999999998876553
No 5
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=8.3e-36 Score=215.62 Aligned_cols=174 Identities=42% Similarity=0.808 Sum_probs=156.5
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
....+.+||+++|.+|+|||||++++.++.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++++|+
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 34567899999999999999999999999998888999888887788899999999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
+++|||++++.++..+...|+..+....+++|+++|+||+|+..... +.+..++++.+++.++...++++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS----------DDVTKQEGDDLCQKLGCVAYIEA 167 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTT----------TCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCC----------CcccHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999986689999998888999999999999976421 26788999999999998879999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
||++|+|++++|+++.+.+...+.
T Consensus 168 Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 168 SSVAKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp BTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred ecCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999887654
No 6
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.1e-35 Score=213.25 Aligned_cols=181 Identities=54% Similarity=0.961 Sum_probs=158.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
++.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.++..+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46799999999999999999999999998888888887777778889999999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|||++++.++..+...|+..+....+++|+++|+||+|+.......+.......+.++.+++..+++..+..+++++||+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence 99999999999987679999988778999999999999987654333333333457888999999999998669999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcc
Q psy15714 181 LNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~~~~~~ 201 (205)
+|.|++++|+++.+.+.+...
T Consensus 163 ~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 163 TQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp TCTTHHHHHHHHHHHHSCCCC
T ss_pred CccCHHHHHHHHHHHHhcccc
Confidence 999999999999999876554
No 7
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=6.9e-36 Score=214.36 Aligned_cols=179 Identities=37% Similarity=0.734 Sum_probs=152.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
....+||+++|++|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||+||++.|+.++..+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 45679999999999999999999999999888888888777667788888999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
+|||++++.++..+...|+..+....+++|+++|+||+|+...............+.++.++++.+++.++..+++++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 99999999999998558999998887899999999999997643222111112234678889999999988666999999
Q ss_pred C-CCCCHHHHHHHHHHHHHh
Q psy15714 180 K-LNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 180 ~-~~~~i~~~~~~i~~~~~~ 198 (205)
+ +++|++++|+++.+.+++
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 9 689999999999998875
No 8
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=9.9e-36 Score=218.54 Aligned_cols=183 Identities=42% Similarity=0.850 Sum_probs=138.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
..+.+||+++|.+|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.++.++..+++.+|+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 34679999999999999999999999998888888887777777888999999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
+|||++++.++..+...|+..+....+++|+++|+||+|+.......+.......+.++.++++.+++..+..+++++||
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 99999999999998768999998887899999999999998765444433334455788899999999999866999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhccc
Q psy15714 180 KLNEGLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~~~~~ 202 (205)
++|.|++++|+++.+.+.+.+.+
T Consensus 191 ~~g~gi~el~~~l~~~~~~~~~r 213 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALSSRGR 213 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHHC---
T ss_pred CCCCCHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999876543
No 9
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=2e-35 Score=212.72 Aligned_cols=185 Identities=26% Similarity=0.483 Sum_probs=152.0
Q ss_pred CCCccCCCCCccccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCC
Q psy15714 3 SGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81 (205)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~ 81 (205)
+++++.....+..........+||+|+|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 81 (189)
T 2gf9_A 2 GSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81 (189)
T ss_dssp ------------CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSC
T ss_pred CccccccccccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCc
Confidence 3444444444445555677889999999999999999999999998877777776665 356677888899999999999
Q ss_pred cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHH
Q psy15714 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS 160 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (205)
+.++..+..+++.+|++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..+
T Consensus 82 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~ 148 (189)
T 2gf9_A 82 ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLEDER------------VVPAE 148 (189)
T ss_dssp CSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHH
T ss_pred HHHhhhHHHhccCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccc------------CCCHH
Confidence 999999999999999999999999999999887 7988888765 689999999999997654 66778
Q ss_pred HHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 161 QGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 161 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
+++.+++..+.. ++++||++|.|++++|+++.+.+.++.+
T Consensus 149 ~~~~~~~~~~~~-~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 188 (189)
T 2gf9_A 149 DGRRLADDLGFE-FFEASAKENINVKQVFERLVDVICEKMN 188 (189)
T ss_dssp HHHHHHHHHTCE-EEECBTTTTBSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 889999998876 9999999999999999999999877543
No 10
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=5.7e-35 Score=212.48 Aligned_cols=180 Identities=52% Similarity=0.907 Sum_probs=157.1
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
.....+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 34578999999999999999999999999988888888888766788899999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
++|||++++.++..+...|+..+....+++|+++|+||+|+.......+.......+.+..+++..+++..+..+++++|
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999999866899999888789999999999999876543333333333468888999999999986699999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15714 179 AKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~ 198 (205)
|++|+|++++|++|.+.+++
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988753
No 11
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.4e-35 Score=214.02 Aligned_cols=174 Identities=25% Similarity=0.483 Sum_probs=149.5
Q ss_pred ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCC
Q psy15714 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95 (205)
Q Consensus 17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 95 (205)
.......+||+|+|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 44557889999999999999999999999998877777776665 45677889899999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY 174 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (205)
|++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++..+.. +
T Consensus 95 d~ii~v~d~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~ 160 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESRR------------DVKREEGEAFAREHGLI-F 160 (191)
T ss_dssp SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCE-E
T ss_pred CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCCcc------------ccCHHHHHHHHHHcCCE-E
Confidence 9999999999999999987 7888887765 689999999999997654 67788889999988876 9
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhhcccCC
Q psy15714 175 LECSAKLNEGLDQVFIAAVRSAVKKQDKSC 204 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~ 204 (205)
+++||+++.|++++|++|.+.+.++.++++
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~ 190 (191)
T 2a5j_A 161 METSAKTACNVEEAFINTAKEIYRKIQQGL 190 (191)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999988776654
No 12
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-35 Score=216.91 Aligned_cols=181 Identities=37% Similarity=0.733 Sum_probs=153.1
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
.....+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++.|+.++..+++.+|++
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 34678999999999999999999999999988888888877766777888889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
++|||++++.++..+...|+..+....+++|+++|+||+|+...............+.++.++++.+++.++..+++++|
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 183 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence 99999999999999855899999888789999999999999764322211111223467888999999998866699999
Q ss_pred cC-CCCCHHHHHHHHHHHHHhh
Q psy15714 179 AK-LNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 179 a~-~~~~i~~~~~~i~~~~~~~ 199 (205)
|+ +++|++++|+++++.++++
T Consensus 184 Ak~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHC
T ss_pred eccCCcCHHHHHHHHHHHHhhC
Confidence 99 6899999999999988753
No 13
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-35 Score=217.76 Aligned_cols=177 Identities=50% Similarity=0.931 Sum_probs=152.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
....+||+++|++|+|||||+++|.++.+...+.+|++..+...+.+++..+.+.+||+||++.|+.++..+++++|+++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 35779999999999999999999999999888888888777777788888999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
+|||++++.++..+...|+..+....+++|+++|+||+|+...+..... ....++.+++..+++.++..+++++||
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD----HTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT----CSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc----ccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 9999999999999876899999888789999999999999765421110 112457888999999999866999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc
Q psy15714 180 KLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~~~ 200 (205)
++|+|++++|+++++.+....
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHhhhh
Confidence 999999999999999987643
No 14
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.6e-35 Score=212.63 Aligned_cols=169 Identities=22% Similarity=0.381 Sum_probs=144.6
Q ss_pred ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
.....+.+||+++|++|+|||||++++.++.+...+.++ ...+...+.+++..+.+.+||++|++.++ +++.+|
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 345678899999999999999999999999998877777 44455788899999999999999998877 677899
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY 174 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (205)
++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+..... +.++.++++.+++.++..++
T Consensus 88 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~v~~~~~~~~~~~~~~~~~ 156 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVY-NYFLRLCSFRNASEVPMVLVGTQDAISAANP----------RVIDDSRARKLSTDLKRCTY 156 (184)
T ss_dssp EEEEEEETTCHHHHHHHH-HHHHHHHTTSCGGGSCEEEEEECTTCBTTBC----------CCSCHHHHHHHHHHTTTCEE
T ss_pred EEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccccc----------cccCHHHHHHHHHHcCCCeE
Confidence 999999999999999987 7999887764 5899999999999953221 27888999999999985569
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714 175 LECSAKLNEGLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 202 (205)
+++||++|+|++++|+++++.+...+++
T Consensus 157 ~e~Sa~~~~gv~~lf~~l~~~i~~~~~k 184 (184)
T 3ihw_A 157 YETCATYGLNVERVFQDVAQKVVALRKK 184 (184)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999887654
No 15
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=2.3e-35 Score=215.05 Aligned_cols=178 Identities=54% Similarity=0.984 Sum_probs=155.5
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
...+.+||+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 34678999999999999999999999999988888888877777788899999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
++|||++++.++..+...|+..+....+++|+++|+||+|+.......+.......+.+..+++..+++..+..+++++|
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 99999999999999876899999988889999999999999887655554444555568899999999999988899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15714 179 AKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~ 196 (205)
|++|+|++++|+++.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 16
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=212.77 Aligned_cols=167 Identities=23% Similarity=0.366 Sum_probs=142.8
Q ss_pred ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
.....+.+||+++|.+|+|||||+++|.++.+...+.+|++..+...+.+++..+.+.+||+||++.++.+ ..+++.+|
T Consensus 15 ~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 15 YFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred HhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 34457789999999999999999999999999888889988877677788999999999999999998875 56889999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhC----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHC----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (205)
++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+ .++.++++.+++.+++.
T Consensus 94 ~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~ 160 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQYR------------QVTKAEGVALAGRFGCL 160 (187)
T ss_dssp EEEEEEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGGGGC------------SSCHHHHHHHHHHHTCE
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchhhcC------------ccCHHHHHHHHHHcCCc
Confidence 999999999999999987 7988887653 689999999999997654 67888999999999986
Q ss_pred eEEEccc-CCCCCHHHHHHHHHHHHHh
Q psy15714 173 EYLECSA-KLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 173 ~~~~~Sa-~~~~~i~~~~~~i~~~~~~ 198 (205)
++++|| ++++|++++|+++++.+.+
T Consensus 161 -~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 161 -FFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp -EEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred -EEEEeecCccccHHHHHHHHHHHHhh
Confidence 999999 8999999999999988754
No 17
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-34 Score=211.60 Aligned_cols=181 Identities=52% Similarity=0.911 Sum_probs=152.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
....+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45678999999999999999999999999888888887777666788999999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
+|||++++.++..+...|+..+....+++|+++|+||+|+.......+.......+.+..+++..+++..+..+++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 99999999999998668999998877899999999999998765443333333345678889999999999866999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc
Q psy15714 180 KLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~~~ 200 (205)
++|.|++++|++|.+.+...+
T Consensus 182 ~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999987653
No 18
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.1e-35 Score=212.00 Aligned_cols=170 Identities=25% Similarity=0.487 Sum_probs=150.0
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
....+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++.++..+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 3456789999999999999999999999999887778876655 457778899999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL 175 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (205)
++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++..+.. ++
T Consensus 101 ~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~ 166 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAERR------------EVSQQRAEEFSEAQDMY-YL 166 (201)
T ss_dssp EEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------SSCHHHHHHHHHHHTCC-EE
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccc------------ccCHHHHHHHHHHcCCE-EE
Confidence 999999999999999987 8998888765 689999999999997654 67788888898888876 99
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++||++|+|++++|+++.+.+..+.+
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 167 ETSAKESDNVEKLFLDLACRLISEAR 192 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999887544
No 19
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=213.67 Aligned_cols=171 Identities=22% Similarity=0.428 Sum_probs=143.5
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
......+||+++|.+|+|||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 4456789999999999999999999999998877778876655 566778888899999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL 175 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (205)
++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+ .++.++++.+++..+..+++
T Consensus 104 ~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~------------~v~~~~~~~~~~~~~~~~~~ 170 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSELR------------EVSLAEAQSLAEHYDILCAI 170 (201)
T ss_dssp EEEEEEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCcccccc------------ccCHHHHHHHHHHcCCCEEE
Confidence 999999999999999987 8988888766 789999999999997654 67788899999999985599
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++||++++|++++|++|.+.+..+.+
T Consensus 171 ~~SA~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 171 ETSAKDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999987654
No 20
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=213.96 Aligned_cols=165 Identities=32% Similarity=0.501 Sum_probs=148.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
....+||+|+|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 45679999999999999999999999999888888888777777888999999999999999999999889999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
+|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..+++..+++.++.. ++++
T Consensus 91 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 156 (206)
T 2bov_A 91 CVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKR------------QVSVEEAKNRAEQWNVN-YVET 156 (206)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCE-EEEE
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccCccccc------------cccHHHHHHHHHHhCCe-EEEE
Confidence 999999999999987 7888887765 489999999999997654 67788899999888875 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHh
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
||++|.|++++|++|.+.+..
T Consensus 157 Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 157 SAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998866
No 21
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=7.1e-35 Score=208.32 Aligned_cols=168 Identities=33% Similarity=0.481 Sum_probs=149.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
..+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.++..+..+++.+|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 35689999999999999999999999999888889888887778889999999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++.++.. ++++
T Consensus 83 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 148 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHMER------------VISYEEGKALAESWNAA-FLES 148 (181)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHC----CCEEEEEECTTCTTTC------------CSCHHHHHHHHHHTTCE-EEEC
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhcc------------eecHHHHHHHHHHhCCc-EEEE
Confidence 999999999999987 7887776654 589999999999997654 78889999999999986 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
||+++.|++++|+++.+.+...+.
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTC--
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999887543
No 22
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=213.93 Aligned_cols=172 Identities=30% Similarity=0.477 Sum_probs=144.3
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCC
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 95 (205)
......+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||+||++.++..+..+++.+
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 33455688999999999999999999999999988888888877766667777889999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
|++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++..+..
T Consensus 97 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~- 162 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPER------------EVQAVEGKKLAESWGAT- 162 (201)
T ss_dssp CEEEEEEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCE-
T ss_pred CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCcccc------------ccCHHHHHHHHHHhCCe-
Confidence 9999999999999999987 7888887654 589999999999997654 77888999999999986
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++++||++|.|++++|++|.+.+.....
T Consensus 163 ~~~~Sa~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 163 FMESSARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999887544
No 23
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.4e-35 Score=212.01 Aligned_cols=177 Identities=51% Similarity=0.883 Sum_probs=135.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
..+.+||+++|++|+|||||++++..+.+...+.+|++..+...+.+++..+.+.+||+||++.++..+..+++++|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45679999999999999999999999998888888887777656667788889999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
+|||++++.++..+...|+..+....+++|+++|+||+|+...+..... ......++.+++..+++.++..+++++||
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFID--HPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHH--C--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccc--cccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 9999999999999876799999888779999999999999765432110 11223467888999999999766999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy15714 180 KLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~ 198 (205)
++|+|++++|+++.+.+.+
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988753
No 24
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.2e-36 Score=216.74 Aligned_cols=184 Identities=26% Similarity=0.464 Sum_probs=155.3
Q ss_pred CccCCCCCccccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcc
Q psy15714 5 AQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQED 83 (205)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 83 (205)
++.+........+......+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (191)
T 3dz8_A 5 HHHSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84 (191)
T ss_dssp ------CCEEEETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH
T ss_pred CCCCCchhccccccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 34444444444556677899999999999999999999999998888788776665 45667777788999999999999
Q ss_pred cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG 162 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (205)
++..+..+++.+|++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+ .+..+++
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~ 151 (191)
T 3dz8_A 85 YRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDMEEER------------VVPTEKG 151 (191)
T ss_dssp CHHHHHHHHTTCCEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHHHH
T ss_pred HHHHHHHHHccCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccc------------ccCHHHH
Confidence 9999999999999999999999999999987 7999998866 689999999999997654 6788889
Q ss_pred HHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714 163 KKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 163 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 202 (205)
+.+++..+.. ++++||++|.|++++|+++.+.+.++..+
T Consensus 152 ~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 190 (191)
T 3dz8_A 152 QLLAEQLGFD-FFEASAKENISVRQAFERLVDAICDKMSD 190 (191)
T ss_dssp HHHHHHHTCE-EEECBTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHHHHhccC
Confidence 9999999986 99999999999999999999999877554
No 25
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=205.51 Aligned_cols=169 Identities=26% Similarity=0.511 Sum_probs=148.4
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
.....+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 345789999999999999999999999998877777776555 4667788999999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
+++|||++++.++..+. .|+..+....+++|+++|+||+|+...+ .+..+++..++...+.. ++++
T Consensus 85 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 150 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPERK------------VVETEDAYKFAGQMGIQ-LFET 150 (181)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCC-EEEC
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCchhc------------ccCHHHHHHHHHHcCCe-EEEE
Confidence 99999999999999987 8999998888899999999999987654 67778899999999886 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
||++|.|++++|+++.+.+...++
T Consensus 151 Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 151 SAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999887654
No 26
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=8.3e-35 Score=208.32 Aligned_cols=167 Identities=32% Similarity=0.469 Sum_probs=149.7
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
....+.+||+++|.+|+|||||++++.++.+...+.++.+..+.....+++..+.+.+||+||++.++..+..+++.+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 34567899999999999999999999999998888888888877788899999999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL 175 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (205)
+++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++.++.. ++
T Consensus 93 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~ 158 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHLR------------KVTRDQGKEMATKYNIP-YI 158 (183)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCSTTC------------CSCHHHHHHHHHHHTCC-EE
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCCchhcc------------CcCHHHHHHHHHHhCCe-EE
Confidence 99999999999999987 7877775532 689999999999997754 78889999999999976 99
Q ss_pred EcccC-CCCCHHHHHHHHHHHHHh
Q psy15714 176 ECSAK-LNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 176 ~~Sa~-~~~~i~~~~~~i~~~~~~ 198 (205)
++||+ ++.|++++|+++.+.+.+
T Consensus 159 ~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 159 ETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp EEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred EeccCCCCCCHHHHHHHHHHHHhh
Confidence 99999 999999999999998764
No 27
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=5.4e-35 Score=209.27 Aligned_cols=168 Identities=29% Similarity=0.549 Sum_probs=119.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 35679999999999999999999999988777777776555 45677889999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .++.++++.+++.++.. ++++
T Consensus 85 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~~ 150 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDKR------------QVSKERGEKLALDYGIK-FMET 150 (183)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEEC--CCSCC------------CSCHHHHHHHHHHHTCE-EEEC
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccCCccC------------cCCHHHHHHHHHHcCCe-EEEE
Confidence 9999999999999987 7988887764 689999999999997654 67788899999998876 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
||++|.|++++|.++.+.+..+.+
T Consensus 151 Sa~~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 151 SAKANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp CC---CCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999877543
No 28
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1.1e-34 Score=207.99 Aligned_cols=169 Identities=31% Similarity=0.493 Sum_probs=148.7
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
.....+||+++|.+|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34678999999999999999999999999988888888877777788899999999999999999999988999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++.++.. +++
T Consensus 94 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~ 159 (187)
T 2a9k_A 94 LCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKR------------QVSVEEAKNRAEQWNVN-YVE 159 (187)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHHCCTTCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEE
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccC------------ccCHHHHHHHHHHcCCe-EEE
Confidence 9999999999999987 7887777655 389999999999997654 67788889999988875 999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
+||+++.|++++|++|.+.+...+.
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 160 TSAKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999876543
No 29
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=2.7e-34 Score=203.05 Aligned_cols=165 Identities=28% Similarity=0.549 Sum_probs=138.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999998877778777665 35677788889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .++.++++.+++..+.. ++++
T Consensus 83 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 148 (170)
T 1z08_A 83 ILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKER------------HVSIQEAESYAESVGAK-HYHT 148 (170)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEEE
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECccccccc------------ccCHHHHHHHHHHcCCe-EEEe
Confidence 9999999999999987 7888877654 589999999999997654 67788899999998876 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHh
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
||++|.|++++|+++.+.+.+
T Consensus 149 Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 149 SAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999988753
No 30
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=207.69 Aligned_cols=174 Identities=27% Similarity=0.431 Sum_probs=150.0
Q ss_pred ccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcC
Q psy15714 15 VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYP 93 (205)
Q Consensus 15 ~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 93 (205)
.......+.+||+|+|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 96 (193)
T 2oil_A 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR 96 (193)
T ss_dssp ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence 3445667889999999999999999999999998877777776655 456778888999999999999999999889999
Q ss_pred CCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714 94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172 (205)
Q Consensus 94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (205)
.+|++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++..++.
T Consensus 97 ~~d~vi~v~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~ 163 (193)
T 2oil_A 97 GAVGALLVFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQAR------------EVPTEEARMFAENNGLL 163 (193)
T ss_dssp TCCEEEEEEETTCHHHHHTHH-HHHHHHHTTSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE
T ss_pred cCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECCCccccc------------ccCHHHHHHHHHHcCCE
Confidence 999999999999999998887 7888887655 689999999999997654 56778889999888875
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 202 (205)
++++||++|.|++++|++|.+.+.++.++
T Consensus 164 -~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 192 (193)
T 2oil_A 164 -FLETSALDSTNVELAFETVLKEIFAKVSK 192 (193)
T ss_dssp -EEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred -EEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998876543
No 31
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=5.6e-34 Score=204.40 Aligned_cols=169 Identities=27% Similarity=0.475 Sum_probs=149.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 46789999999999999999999999998887777776555 45677888889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..+++..+++..+.. ++++
T Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 152 (186)
T 2bme_A 87 LLVYDITSRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDADR------------EVTFLEASRFAQENELM-FLET 152 (186)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEEC
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEEe
Confidence 9999999999999987 7888877655 689999999999997543 67778888999888876 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~~~ 202 (205)
||++|+|++++|+++.+.+.++.+.
T Consensus 153 Sa~~~~gi~~l~~~l~~~~~~~~~~ 177 (186)
T 2bme_A 153 SALTGENVEEAFVQCARKILNKIES 177 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998876554
No 32
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2.7e-34 Score=204.56 Aligned_cols=166 Identities=30% Similarity=0.511 Sum_probs=146.6
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
.....+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 456789999999999999999999999998877778777665 4567788889999999999999999998899999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
+++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++..+.. +++
T Consensus 91 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~ 156 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQR------------DVTYEEAKQFAEENGLL-FLE 156 (179)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EEE
T ss_pred EEEEEeCcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEE
Confidence 99999999999999887 8888887766 689999999999997654 67778899999988876 999
Q ss_pred cccCCCCCHHHHHHHHHHHHHh
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
+||++++|++++|+++.+.+.+
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 157 ASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC-
T ss_pred EeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999988754
No 33
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=209.70 Aligned_cols=174 Identities=28% Similarity=0.484 Sum_probs=140.1
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 94 (205)
..+...+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 97 (200)
T 2o52_A 18 GSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 97 (200)
T ss_dssp ----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhcc
Confidence 344567889999999999999999999999998877777776555 4567788888999999999999999999999999
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
+|++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .++.+++..+++..+..
T Consensus 98 ~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~- 163 (200)
T 2o52_A 98 AAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPER------------EVTFLEASRFAQENELM- 163 (200)
T ss_dssp CSEEEEEEETTCHHHHHTHH-HHHHHHHHHTCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-
T ss_pred CCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCccccc------------ccCHHHHHHHHHHcCCE-
Confidence 99999999999999999987 7888887655 689999999999997644 67778888999888876
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKKQDKS 203 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 203 (205)
++++||++|.|++++|+++.+.+..+.+..
T Consensus 164 ~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~ 193 (200)
T 2o52_A 164 FLETSALTGENVEEAFLKCARTILNKIDSG 193 (200)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999988765543
No 34
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=5e-34 Score=203.72 Aligned_cols=169 Identities=26% Similarity=0.460 Sum_probs=145.8
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
.....+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 456779999999999999999999999998887777777665 4567788888999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
+++|||++++.+++.+. .|+..+.... +++|+++|+||+|+...+ .+..++++.+++..+.. +++
T Consensus 88 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~ 153 (181)
T 2efe_B 88 AIIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLDAR------------KVTAEDAQTYAQENGLF-FME 153 (181)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTC------------CSCHHHHHHHHHHTTCE-EEE
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCcccccc------------cCCHHHHHHHHHHcCCE-EEE
Confidence 99999999999999987 7888887765 689999999999997654 67788899999888876 999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
+||++|+|++++|++|.+.+.....
T Consensus 154 ~Sa~~g~gi~~l~~~l~~~~~~~~~ 178 (181)
T 2efe_B 154 TSAKTATNVKEIFYEIARRLPRVQP 178 (181)
T ss_dssp CCSSSCTTHHHHHHHHHHTCC----
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999988766543
No 35
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.3e-34 Score=204.06 Aligned_cols=163 Identities=30% Similarity=0.521 Sum_probs=144.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999988888888877777777888889999999999999999988899999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .++.++++.+++.++..+++++||
T Consensus 82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 82 YSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDER------------VVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHHCCSCCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTSCEEEECBT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhCcCCCcEEEEEECccccccc------------cCCHHHHHHHHHHccCCcEEEecC
Confidence 9999999999987 6777776542 689999999999997654 677888899998885555999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy15714 180 KLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~ 197 (205)
++|.|++++|+++.+.+.
T Consensus 149 ~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 149 KSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TTTBSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998763
No 36
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=3.4e-34 Score=204.43 Aligned_cols=169 Identities=33% Similarity=0.522 Sum_probs=149.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
..+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 45679999999999999999999999999888888888777777888998999999999999999999888999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHH-hhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 100 LCFSIGSTSSYENILSKWYPEL-KHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
+|||++++.++..+. .|+..+ .... .++|+++|+||+|+...+ .+..++++.++...+.. ++++
T Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~~ 151 (181)
T 2fn4_A 86 LVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQR------------QVPRSEASAFGASHHVA-YFEA 151 (181)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHTSSCCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEEC
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc------------ccCHHHHHHHHHHcCCe-EEEe
Confidence 999999999999987 677666 4333 689999999999997654 67788888999888876 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~~~ 202 (205)
||++|.|++++|++|.+.+...++.
T Consensus 152 Sa~~~~gv~~l~~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 152 SAKLRLNVDEAFEQLVRAVRKYQEQ 176 (181)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999998876554
No 37
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.3e-33 Score=205.95 Aligned_cols=166 Identities=25% Similarity=0.529 Sum_probs=148.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45679999999999999999999999999888888877666 45677889899999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..+++..+++..+.. ++++
T Consensus 85 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 150 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDKR------------VVEYDVAKEFADANKMP-FLET 150 (206)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTC------------CSCHHHHHHHHHHTTCC-EEEC
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccc------------ccCHHHHHHHHHHcCCe-EEEE
Confidence 9999999999999987 7988887765 689999999999997654 67778888999888876 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
||++|.|++++|.++.+.+...
T Consensus 151 Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 151 SALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 38
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.1e-34 Score=205.29 Aligned_cols=165 Identities=20% Similarity=0.334 Sum_probs=139.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
..+.+||+++|++|+|||||+++|.++.+.. +.+|.+..+...+.+++..+.+.+||+||++. ..+++++|+++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 4567999999999999999999999999876 67888877777788899999999999999976 34678899999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhh---C-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHH---C-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL 175 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~---~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (205)
+|||++++.++..+. .|+..+... . +++|+++|+||+|+..... +.++.++++.+++..+..+++
T Consensus 78 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 78 FVFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRISASSP----------RVVGDARARALXADMKRCSYY 146 (178)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBC----------CCSCHHHHHHHHHHHSSEEEE
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECcccccccc----------CcCCHHHHHHHHHhhcCCeEE
Confidence 999999999999987 666555443 2 5899999999999953211 267888899998887555699
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++||++|+|++++|+++.+.+.+.++
T Consensus 147 ~~Sa~~~~~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 147 ETXATYGLNVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999877644
No 39
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=2.7e-34 Score=202.39 Aligned_cols=163 Identities=32% Similarity=0.512 Sum_probs=143.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 56899999999999999999999999888888888777777778899999999999999999999988999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++..+.. ++++||
T Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa 148 (168)
T 1u8z_A 83 FSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKR------------QVSVEEAKNRADQWNVN-YVETSA 148 (168)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTCE-EEECCT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccccccC------------ccCHHHHHHHHHHcCCe-EEEeCC
Confidence 9999999999987 7888777655 489999999999997654 67788889999888876 999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy15714 180 KLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~ 198 (205)
++|.|++++|+++.+.+.+
T Consensus 149 ~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 149 KTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 40
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.4e-33 Score=203.22 Aligned_cols=173 Identities=31% Similarity=0.490 Sum_probs=137.6
Q ss_pred ccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714 15 VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94 (205)
Q Consensus 15 ~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 94 (205)
....+..+.+||+++|.+|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.
T Consensus 13 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (190)
T 3con_A 13 NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92 (190)
T ss_dssp ------CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTT
T ss_pred cccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCc
Confidence 33445578899999999999999999999999988887888777776778888999999999999999999999999999
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (205)
+|++++|||+++..++..+. .|+..+.... .++|+++|+||+|+... .+..++++.+++..+..
T Consensus 93 ~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~ 158 (190)
T 3con_A 93 GEGFLCVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPTR-------------TVDTKQAHELAKSYGIP 158 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC-------------CSCHHHHHHHHHHHTCC
T ss_pred CCEEEEEEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCcc-------------cCCHHHHHHHHHHcCCe
Confidence 99999999999999999986 7888887654 48999999999999763 56678888999988886
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 202 (205)
++++||+++.|++++|++|.+.+.+.+.+
T Consensus 159 -~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 187 (190)
T 3con_A 159 -FIETSAKTRQGVEDAFYTLVREIRQYRMK 187 (190)
T ss_dssp -EEECCTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred -EEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998776543
No 41
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=4.9e-34 Score=201.25 Aligned_cols=164 Identities=25% Similarity=0.484 Sum_probs=145.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
.+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999999998888888877655 566778888899999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
+|||++++.+++.+. .|+..+.....+.|+++|+||+|+...+ .+..++++.+++..+.. ++++||
T Consensus 83 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa 148 (168)
T 1z2a_A 83 LVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDS------------CIKNEEAEGLAKRLKLR-FYRTSV 148 (168)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGGC------------SSCHHHHHHHHHHHTCE-EEECBT
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccCccc------------ccCHHHHHHHHHHcCCe-EEEEec
Confidence 999999999999887 7888887666789999999999997654 66778888999888885 999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy15714 180 KLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~ 198 (205)
+++.|++++|+++.+.+.+
T Consensus 149 ~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 149 KEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTTBSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999988764
No 42
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=9.1e-34 Score=206.23 Aligned_cols=167 Identities=28% Similarity=0.511 Sum_probs=148.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 45679999999999999999999999998877778776655 45677788899999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
|+|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++.++.. ++++
T Consensus 85 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 150 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDER------------VVSSERGRQLADHLGFE-FFEA 150 (203)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHSCSSCEEEEEEECTTCTTSC------------CSCHHHHHHHHHHHTCE-EEEC
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCccc------------ccCHHHHHHHHHHCCCe-EEEE
Confidence 9999999999999987 7988888766 689999999999997654 67788889999998875 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
||++|.|++++|++|.+.+.++.
T Consensus 151 Sa~~~~gi~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 151 SAKDNINVKQTFERLVDVICEKM 173 (203)
T ss_dssp BTTTTBSSHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999887653
No 43
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=207.72 Aligned_cols=169 Identities=27% Similarity=0.495 Sum_probs=140.1
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
......+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 3456789999999999999999999999998777777776555 456778888899999999999999998888999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL 175 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (205)
++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++.....+++
T Consensus 101 ~iilV~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~~------------~v~~~~~~~~~~~~~~~~~~ 167 (192)
T 2il1_A 101 GIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDR------------EITRQQGEKFAQQITGMRFC 167 (192)
T ss_dssp EEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHTSTTCEEE
T ss_pred EEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccc------------ccCHHHHHHHHHhcCCCeEE
Confidence 999999999999999986 8988888766 589999999999997654 67778888898886445599
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
++||++|+|++++|++|.+.+.++
T Consensus 168 ~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 168 EASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999988653
No 44
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=4.8e-34 Score=201.58 Aligned_cols=163 Identities=26% Similarity=0.498 Sum_probs=143.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
..+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45789999999999999999999999998877777776665 45677888899999999999999999988999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
++|||++++.++..+. .|+..+.... +++|+++|+||+|+...+ .+..++++.+++..+.. ++++
T Consensus 83 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 148 (170)
T 1r2q_A 83 IVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANKR------------AVDFQEAQSYADDNSLL-FMET 148 (170)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEEC
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCcccc------------ccCHHHHHHHHHHcCCe-EEEE
Confidence 9999999999999987 7888877764 789999999999997643 56778888899888876 9999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q psy15714 178 SAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~ 196 (205)
||++|+|++++|++|.+.+
T Consensus 149 Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 149 SAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CTTTCTTHHHHHHHHHHTS
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 45
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=8.6e-34 Score=201.38 Aligned_cols=167 Identities=26% Similarity=0.320 Sum_probs=131.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcc--cccccccCcCCCcEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED--YERLRPMSYPNTDCF 98 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~ 98 (205)
.+.+||+++|++|+|||||+++|.++.+...+.+...+.+...+.+++..+.+.+||+||++. +..+...+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 356899999999999999999999988765444322233356678899999999999999987 566677788999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.++...+.. +++
T Consensus 82 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~piilv~NK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~ 147 (175)
T 2nzj_A 82 VIVYSIADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLARCR------------EVSVEEGRACAVVFDCK-FIE 147 (175)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHCC----CCEEEEEECTTCTTTC------------CSCHHHHHHHHHHHTSE-EEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhhccCCCCEEEEEEChhhcccc------------ccCHHHHHHHHHHcCCe-EEE
Confidence 9999999999999987 7888777653 589999999999997654 67778888888888875 999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
+||++|+|++++|++|.+.+...++
T Consensus 148 ~Sa~~g~gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 148 TSATLQHNVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999876654
No 46
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.3e-34 Score=207.26 Aligned_cols=171 Identities=26% Similarity=0.358 Sum_probs=136.4
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCCcCccccccceeEEECCEEEEEEEEEcCCCcc-cccccccCc
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENK--FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED-YERLRPMSY 92 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~ 92 (205)
.+......+||+++|.+|+|||||+++|.+.. +...+.++..+.+...+.+++..+.+.+||++|++. ++.+...++
T Consensus 30 ~~~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~ 109 (211)
T 2g3y_A 30 SSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCM 109 (211)
T ss_dssp -----CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCC
T ss_pred ccccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHH
Confidence 34455678999999999999999999999643 344444433333456778899999999999999877 556677788
Q ss_pred CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
+.++++++|||++++.+|+.+. .|...+.... .++|+++|+||+|+...+ .+..++++.++...+
T Consensus 110 ~~a~~~ilVydvt~~~sf~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~~r------------~v~~~e~~~~a~~~~ 176 (211)
T 2g3y_A 110 QVGDAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRCR------------EVSVSEGRACAVVFD 176 (211)
T ss_dssp CCCSEEEEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECTTCGGGC------------CSCHHHHHHHHHHHT
T ss_pred hhCCEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEChHHhcCc------------eEeHHHHHHHHHHcC
Confidence 9999999999999999999987 7877776532 589999999999997643 677788888888888
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
+. ++++||++|+|++++|+++++.+...+
T Consensus 177 ~~-~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 177 CK-FIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp CE-EEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred CE-EEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 76 999999999999999999999886544
No 47
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=204.30 Aligned_cols=168 Identities=27% Similarity=0.542 Sum_probs=150.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 35779999999999999999999999998888778776655 46778889999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++.++.. ++++
T Consensus 93 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 158 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTKK------------VVDYTTAKEFADSLGIP-FLET 158 (196)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTC------------CSCHHHHHHHHHHTTCC-EEEE
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccc------------ccCHHHHHHHHHHcCCc-EEEE
Confidence 9999999999999987 7988887776 689999999999998765 67788899999999987 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
||+++.|++++|+++.+.+.+...
T Consensus 159 Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 159 SAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999887654
No 48
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=7.6e-34 Score=200.11 Aligned_cols=162 Identities=24% Similarity=0.327 Sum_probs=121.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF 102 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 102 (205)
.+||+++|++|+|||||++++.+..+. ...++.+..+...+.+++..+.+.+||+||++.++..+..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 579999999999999999999977654 3345556666667788999999999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|++++.+++.+. .|+..+.... .++|+++|+||+|+...+ .+..++++.++...+.. ++++||+
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~ 146 (166)
T 3q72_A 81 SVTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRSR------------EVSVDEGRACAVVFDCK-FIETSAA 146 (166)
T ss_dssp ETTCHHHHHHHH-HHHHHHHHCC---CCCEEEEEECTTCCSSC------------CSCHHHHHHHHHHTTCE-EEECBGG
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEecccccccc------------ccCHHHHHHHHHHhCCc-EEEeccC
Confidence 999999999987 6777776653 689999999999998764 78888899999998876 9999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy15714 181 LNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~~~~ 199 (205)
+|+|++++|+++.+.+...
T Consensus 147 ~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 147 LHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp GTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 49
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=9.5e-34 Score=204.30 Aligned_cols=173 Identities=25% Similarity=0.452 Sum_probs=147.6
Q ss_pred ccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc--eeEEECCE---------EEEEEEEEcCCCcc
Q psy15714 15 VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP--DTITVDNK---------TYDVTLWDTAGQED 83 (205)
Q Consensus 15 ~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~~~i~D~~g~~~ 83 (205)
|........+||+|+|.+|+|||||++++.++.+...+.++.+..+. ..+.+++. .+.+.+||+||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 44445677899999999999999999999999988777777766553 34555554 78999999999999
Q ss_pred cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ 161 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (205)
++..+..+++.+|++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~ 149 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQR------------AVKEEE 149 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGGGC------------CSCHHH
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc------------ccCHHH
Confidence 9999999999999999999999999999987 8888887765 589999999999997654 667788
Q ss_pred HHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 162 GKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 162 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++.+++..+.. ++++||+++.|++++|++|.+.+.+..+
T Consensus 150 ~~~~~~~~~~~-~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 150 ARELAEKYGIP-YFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp HHHHHHHHTCC-EEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-EEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 88999888886 9999999999999999999999887654
No 50
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-33 Score=200.32 Aligned_cols=168 Identities=29% Similarity=0.547 Sum_probs=137.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccc-eeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
....+||+++|.+|+|||||++++.++.+. ..+.++.+..+. ..+.+++..+.+.+||+||++.++..+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 467899999999999999999999999885 455666666653 455788989999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
+++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++..+.. +++
T Consensus 87 ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~ 152 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAHER------------VVKREDGEKLAKEYGLP-FME 152 (180)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECCSTTSCC------------CSCHHHHHHHHHHHTCC-EEE
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccCccc------------ccCHHHHHHHHHHcCCe-EEE
Confidence 99999999999999887 7888887766 689999999999998754 67778888999888876 999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
+||+++.|++++|+++.+.+.....
T Consensus 153 ~Sa~~~~gi~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 153 TSAKTGLNVDLAFTAIAKELKRRSM 177 (180)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC---
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998876544
No 51
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=9.2e-34 Score=203.61 Aligned_cols=164 Identities=35% Similarity=0.564 Sum_probs=144.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+.+||+++|++|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999999998888888877777778889999999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
|||++++.++..+. .|+..+.... .++|+++|+||+|+... ....+++..+++..+.. ++++|
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~~~S 146 (189)
T 4dsu_A 82 VFAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDLPSR-------------TVDTKQAQDLARSYGIP-FIETS 146 (189)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTSSSC-------------SSCHHHHHHHHHHHTCC-EEECC
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccCccc-------------ccCHHHHHHHHHHcCCe-EEEEe
Confidence 99999999999987 7888777654 58999999999999753 67788899999999877 99999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15714 179 AKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~~ 199 (205)
|++|.|++++|+++.+.+...
T Consensus 147 a~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 147 AKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999998753
No 52
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=208.65 Aligned_cols=168 Identities=30% Similarity=0.481 Sum_probs=140.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.|||+||++.|+.++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 46679999999999999999999999998877778877666 45677889889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
|+|||++++.++..+. .|+..+.... .++|++||+||+|+...+ .+..+++..+++..+.. ++++
T Consensus 90 ilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~~ 155 (223)
T 3cpj_B 90 LIVYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAHLR------------AVPTEESKTFAQENQLL-FTET 155 (223)
T ss_dssp EEEEC-CCHHHHHHHH-HHHHHHHHHCC--CEEEEEECCGGGGGGC------------CSCHHHHHHHHHHTTCE-EEEC
T ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEEE
Confidence 9999999999999987 7988887765 689999999999997644 67778888999888875 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
||++++|++++|++|.+.+....+
T Consensus 156 Sa~~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 156 SALNSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp CCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999876543
No 53
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.4e-33 Score=199.29 Aligned_cols=164 Identities=27% Similarity=0.514 Sum_probs=145.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998887788877665 45677888889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
++|||++++.++..+. .|+..+.... +++|+++|+||+|+...+ .+..++++.+++..+.. ++++
T Consensus 83 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~~ 148 (170)
T 1z0j_A 83 IIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDVR------------EVMERDAKDYADSIHAI-FVET 148 (170)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EEEC
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECCcccccc------------ccCHHHHHHHHHHcCCE-EEEE
Confidence 9999999999999986 8988888764 789999999999997654 67788889999888875 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy15714 178 SAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~ 197 (205)
||+++.|++++|+++.+.+.
T Consensus 149 Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 149 SAKNAININELFIEISRRIP 168 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHCC
T ss_pred eCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999988753
No 54
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.7e-33 Score=199.29 Aligned_cols=167 Identities=32% Similarity=0.519 Sum_probs=141.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45679999999999999999999999998877778777655 56677889889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
++|||++++.++..+. .|+..+.... .++|+++|+||+|+... .+..++++.+++.....+
T Consensus 84 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~ 149 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDISER-------------QVSTEEAQAWCRDNGDYP 149 (177)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-------------SSCHHHHHHHHHHTTCCC
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCccccc-------------ccCHHHHHHHHHhcCCce
Confidence 9999999999999886 7888776543 57899999999999732 677788888888555555
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
++++||++|.|++++|+++.+.+.++.
T Consensus 150 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 176 (177)
T 1wms_A 150 YFETSAKDATNVAAAFEEAVRRVLATE 176 (177)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTC-
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999987653
No 55
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=6.8e-34 Score=200.13 Aligned_cols=163 Identities=33% Similarity=0.513 Sum_probs=144.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
+.+||+++|++|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999888888887777677788899999999999999999999888899999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
||++++.+++.+. .|+..+.... .+.|+++|+||+|+...+ .+..++++.+++..+.. ++++||
T Consensus 82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa 147 (167)
T 1kao_A 82 YSLVNQQSFQDIK-PMRDQIIRVKRYEKVPVILVGNKVDLESER------------EVSSSEGRALAEEWGCP-FMETSA 147 (167)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTSC-EEEECT
T ss_pred EeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcccccc------------cCCHHHHHHHHHHhCCC-EEEecC
Confidence 9999999999987 6766665544 589999999999997654 67778888899888876 999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy15714 180 KLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~ 198 (205)
++|.|++++|+++.+.+.+
T Consensus 148 ~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 148 KSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHhh
Confidence 9999999999999988753
No 56
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=9.2e-34 Score=200.12 Aligned_cols=165 Identities=27% Similarity=0.504 Sum_probs=143.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999998877778777665 4567788899999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
|||++++.++..+. .|+..+.... .++|+++|+||+|+..... .+.+..++++.+++..+.. ++++||
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~~~-~~~~Sa 150 (170)
T 1ek0_A 82 VYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDXLQEGG---------ERKVAREEGEKLAEEKGLL-FFETSA 150 (170)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGSSC---------CCCSCHHHHHHHHHHHTCE-EEECCT
T ss_pred EEecCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCcccccc---------ccCCCHHHHHHHHHHcCCE-EEEEeC
Confidence 99999999999987 7888887765 6899999999999976421 1267788888999888876 999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy15714 180 KLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~ 197 (205)
++|.|++++|+++.+.+.
T Consensus 151 ~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 151 KTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp TTCTTHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999987653
No 57
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-33 Score=203.02 Aligned_cols=167 Identities=29% Similarity=0.539 Sum_probs=147.6
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
...+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.|||+||++.++..+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 456789999999999999999999999998888788876655 4567788999999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL 175 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (205)
+++|||++++.++..+. .|+..+.... .++|+++|+||+|+... .+..+++..+++..+.. ++
T Consensus 91 ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~ 155 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKENR-------------EVDRNEGLKFARKHSML-FI 155 (195)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSSC-------------CSCHHHHHHHHHHTTCE-EE
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCccc-------------ccCHHHHHHHHHHcCCE-EE
Confidence 99999999999999987 7988887765 58999999999999542 56778888999988876 99
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
++||+++.|++++|++|.+.+....
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 156 EASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred EecCCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999987653
No 58
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.1e-33 Score=199.83 Aligned_cols=165 Identities=27% Similarity=0.616 Sum_probs=139.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
..+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999998877777777665 4566778888999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
|||++++.++..+. .|+..+.... .++|+++|+||+|+... .+..++++.+++..+.. ++++||
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~~~Sa 146 (170)
T 1g16_A 82 VYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMETR-------------VVTADQGEALAKELGIP-FIESSA 146 (170)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTTC-------------CSCHHHHHHHHHHHTCC-EEECBT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCCcC-------------ccCHHHHHHHHHHcCCe-EEEEEC
Confidence 99999999998887 7888887765 68999999999999432 56778888899888876 999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcc
Q psy15714 180 KLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++|.|++++|.++.+.+.++.+
T Consensus 147 ~~~~gv~~l~~~l~~~~~~~~~ 168 (170)
T 1g16_A 147 KNDDNVNEIFFTLAKLIQEKID 168 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999887644
No 59
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.6e-34 Score=205.38 Aligned_cols=170 Identities=30% Similarity=0.482 Sum_probs=145.9
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCC
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 95 (205)
.+....+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++. ...+..+++.+
T Consensus 21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 99 (196)
T 2atv_A 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWG 99 (196)
T ss_dssp ------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHC
T ss_pred hccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccC
Confidence 34445678999999999999999999999999988888888877777788899999999999999988 66777889999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
|++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+ .++.++++.+++..+..
T Consensus 100 d~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~------------~v~~~~~~~~~~~~~~~- 165 (196)
T 2atv_A 100 EGFVLVYDITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHSR------------QVSTEEGEKLATELACA- 165 (196)
T ss_dssp SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTSE-
T ss_pred CEEEEEEECcCHHHHHHHH-HHHHHHHHhhCCCCCcEEEEEECccccccc------------ccCHHHHHHHHHHhCCe-
Confidence 9999999999999999987 7887776643 689999999999997654 67788899999888876
Q ss_pred EEEcccCCCC-CHHHHHHHHHHHHHhhc
Q psy15714 174 YLECSAKLNE-GLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 174 ~~~~Sa~~~~-~i~~~~~~i~~~~~~~~ 200 (205)
++++||++|. |++++|+++.+.+.+++
T Consensus 166 ~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 166 FYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp EEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 9999999999 99999999999987654
No 60
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.6e-33 Score=201.09 Aligned_cols=170 Identities=30% Similarity=0.542 Sum_probs=131.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
....+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.++ +..+.+.+||+||++.++..+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 45679999999999999999999999998887778776555 4455555 556889999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (205)
+++|||++++.++..+. .|+..+.... .++|+++|+||+|+.... +.+..++++.+++.....
T Consensus 85 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~v~~~~~~~~~~~~~~~ 152 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEESK-----------KIVSEKSAQELAKSLGDI 152 (182)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-----------CCSCHHHHHHHHHHTTSC
T ss_pred EEEEEECCChHHHHHHH-HHHHHHHHHhcccCcCCCcEEEEEECCcccccc-----------ccCCHHHHHHHHHhcCCC
Confidence 99999999999999987 7887776543 589999999999996432 156778888888855555
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
+++++||++|+|++++|+++.+.+.++++
T Consensus 153 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 153 PLFLTSAKNAINVDTAFEEIARSALQQNQ 181 (182)
T ss_dssp CEEEEBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 59999999999999999999999987765
No 61
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=4.1e-34 Score=203.69 Aligned_cols=168 Identities=23% Similarity=0.333 Sum_probs=143.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECC-EEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDN-KTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 35679999999999999999999999988766677776444 45667766 67899999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC---CCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC---PKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
+++|||++++.+++.+. .|+..+.... .+.| +++|+||+|+...+ .++.++++.+++..+..
T Consensus 83 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~- 148 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHMR------------TIKPEKHLRFCQENGFS- 148 (178)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGC------------SSCHHHHHHHHHHHTCE-
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEcccccccc------------ccCHHHHHHHHHHcCCc-
Confidence 99999999999999887 7888887643 2566 89999999997643 67778889999888876
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++++||++|+|++++|+++.+.+.+...
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 149 SHFVSAKTGDSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999998876543
No 62
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-33 Score=204.35 Aligned_cols=167 Identities=28% Similarity=0.474 Sum_probs=145.2
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
...+.+||+|+|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 346789999999999999999999999998877788877665 4556677888999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
+++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++..+.. +++
T Consensus 99 iilV~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~ 164 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDIR------------EVPLKDAKEYAESIGAI-VVE 164 (192)
T ss_dssp EEEEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHTTTCE-EEE
T ss_pred EEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEE
Confidence 99999999999999986 8998888776 689999999999997543 67788899999888876 999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhh
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+||+++.|++++|++|.+.+.+.
T Consensus 165 ~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 165 TSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHTCC--
T ss_pred EeCCCCcCHHHHHHHHHHHHHhh
Confidence 99999999999999999876543
No 63
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.6e-33 Score=202.80 Aligned_cols=166 Identities=28% Similarity=0.518 Sum_probs=141.3
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccc-cccccCcCCC
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYE-RLRPMSYPNT 95 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~ 95 (205)
....+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++ ..+..+++.+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 3446789999999999999999999999999887778777665 4567788888999999999999998 7788889999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
|++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++..+..
T Consensus 95 d~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~- 160 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRSAI------------QVPTDLAQKFADTHSMP- 160 (189)
T ss_dssp CEEEEEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCC-
T ss_pred CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc------------eeCHHHHHHHHHHcCCE-
Confidence 9999999999999999987 7888887764 689999999999997654 67788889999988886
Q ss_pred EEEcccCCC---CCHHHHHHHHHHHHH
Q psy15714 174 YLECSAKLN---EGLDQVFIAAVRSAV 197 (205)
Q Consensus 174 ~~~~Sa~~~---~~i~~~~~~i~~~~~ 197 (205)
++++||+++ +|++++|.+|.+.+.
T Consensus 161 ~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 161 LFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp EEECCSSSGGGGSCHHHHHHHHC----
T ss_pred EEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 999999999 999999999988764
No 64
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.2e-34 Score=206.31 Aligned_cols=175 Identities=31% Similarity=0.468 Sum_probs=136.6
Q ss_pred cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94 (205)
Q Consensus 16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 94 (205)
++....+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.|||+||++.++..+..+++.
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 344566789999999999999999999999998877778777666 4677889999999999999999999988889999
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
+|++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+...... ...+.+..++++.+++..+..
T Consensus 101 ~d~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~------~~~~~v~~~~~~~~~~~~~~~- 172 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDTAAT------EGQKCVPGHFGEKLAMTYGAL- 172 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHH-HHHHHHHHHC---CCEEEEEECGGGHHHHHH------TTCCCCCHHHHHHHHHHHTCE-
T ss_pred CCEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccccc------ccccccCHHHHHHHHHHcCCe-
Confidence 99999999999999999987 7988887765 68999999999999643210 112367788899999998886
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
++++||++|.|++++|.++.+.+.+
T Consensus 173 ~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 173 FCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988753
No 65
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=8.9e-34 Score=205.31 Aligned_cols=169 Identities=27% Similarity=0.367 Sum_probs=138.0
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc-ccccceeEEECCEEEEEEEEEcCCCccccc-ccccCcCCC
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQEDYER-LRPMSYPNT 95 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~ 95 (205)
......+||+++|++|+|||||+++|.+........+++ .+.+...+.+++..+.+.+||++|++.+.. ++..+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 345677999999999999999999997544332223333 333456677899999999999999988765 667788899
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
|++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .++.++++.+++..+..
T Consensus 98 d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~a~~~~~~- 163 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARSR------------EVSLEEGRHLAGTLSCK- 163 (195)
T ss_dssp SEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCTTTC------------CSCHHHHHHHHHHTTCE-
T ss_pred CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeechhccccC------------CcCHHHHHHHHHHhCCE-
Confidence 9999999999999999987 7888887655 489999999999997654 67788899999988875
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
++++||+++.|++++|+++++.+...+
T Consensus 164 ~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 164 HIETSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999887544
No 66
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.3e-33 Score=198.14 Aligned_cols=163 Identities=27% Similarity=0.356 Sum_probs=128.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccc-cccceeEEECCEEEEEEEEEcCCCccccc-ccccCcCCCcEEEE
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF-DNYPDTITVDNKTYDVTLWDTAGQEDYER-LRPMSYPNTDCFLL 100 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~ 100 (205)
.+||+++|++|+|||||++++.+..+...+.++.. ..+...+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 48999999999999999999998776544444333 33356777899999999999999998876 66777889999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
|||+++++++..+. .|+..+.... .++|+++|+||+|+...+ .++.+++..+++..+.. ++++|
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~S 147 (169)
T 3q85_A 82 VFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARSR------------EVSLEEGRHLAGTLSCK-HIETS 147 (169)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EEECB
T ss_pred EEECCChHHHHHHH-HHHHHHHhcccCCCCCEEEEeeCcchhhcc------------cCCHHHHHHHHHHcCCc-EEEec
Confidence 99999999999987 7877777765 489999999999997654 78889999999999886 99999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15714 179 AKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~~ 199 (205)
|+++.|++++|+++.+.+...
T Consensus 148 a~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 148 AALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTTTBSHHHHHHHHHHHHHHT
T ss_pred CccCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 67
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=5.5e-34 Score=209.49 Aligned_cols=173 Identities=28% Similarity=0.473 Sum_probs=144.9
Q ss_pred ccccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCE----------EEEEEEEEcCCC
Q psy15714 13 KDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNK----------TYDVTLWDTAGQ 81 (205)
Q Consensus 13 ~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~~~i~D~~g~ 81 (205)
.+.......+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++. .+.+.|||+||+
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 94 (217)
T 2f7s_A 15 VPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94 (217)
T ss_dssp ------CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred CcCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence 333445567889999999999999999999999998777777766555 345556655 789999999999
Q ss_pred cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccH
Q psy15714 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVST 159 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (205)
+.++..+..+++.+|++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..
T Consensus 95 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~------------~v~~ 161 (217)
T 2f7s_A 95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQR------------EVNE 161 (217)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGGGC------------CSCH
T ss_pred HhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEEEEEECCcccccc------------ccCH
Confidence 999999889999999999999999999999987 7888776654 589999999999997654 6778
Q ss_pred HHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 160 SQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
++++.+++..+.. ++++||++++|++++|++|.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~-~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 162 RQARELADKYGIP-YFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp HHHHHHHHHTTCC-EEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCc-EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 8899999998887 99999999999999999999988764
No 68
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1.9e-33 Score=200.15 Aligned_cols=165 Identities=27% Similarity=0.496 Sum_probs=143.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
+.+.+||+|+|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999998877777776544 56677889889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++..+.. ++++
T Consensus 91 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 156 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELNVM-FIET 156 (179)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTCE-EEEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCcccccC------------cCCHHHHHHHHHHcCCe-EEEE
Confidence 9999999999999887 7887776654 689999999999997654 67778888888888876 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHh
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
||+++.|++++|++|.+.+..
T Consensus 157 Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 157 SAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp BTTTTBSHHHHHHHHHHTCC-
T ss_pred eCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999886643
No 69
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.1e-32 Score=200.95 Aligned_cols=165 Identities=29% Similarity=0.524 Sum_probs=140.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....+||+|+|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45679999999999999999999999998877777776555 45677788889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
|+|||++++.++..+. .|+..+.... .++|+++|+||+|+... .+..+++..+++.....+
T Consensus 85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~ 150 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLENR-------------QVATKRAQAWCYSKNNIP 150 (207)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-------------CSCHHHHHHHHHHTTSCC
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCccc-------------ccCHHHHHHHHHhcCCce
Confidence 9999999999999886 7887776543 47999999999999732 566778888887444445
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
++++||++|.|++++|++|.+.+..
T Consensus 151 ~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 151 YFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 70
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.9e-33 Score=204.98 Aligned_cols=168 Identities=24% Similarity=0.369 Sum_probs=111.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCcCccccc-cceeEEECCE--EEEEEEEEcCCCcccccccccCcCC
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTEN--KFPTDYVPTVFDN-YPDTITVDNK--TYDVTLWDTAGQEDYERLRPMSYPN 94 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~~~-~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~ 94 (205)
....+||+|+|.+|+|||||++++.++ .+...+.+|++.. ....+.+++. .+.+.+||+||++.+...+..+++.
T Consensus 17 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 96 (208)
T 2yc2_C 17 ATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNG 96 (208)
T ss_dssp EEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence 467899999999999999999999998 7877778887644 4567778876 8899999999999999999999999
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhCC----CCCEEEEeeCccccc-CchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCP----KVPIILVGTKADLRS-ENKTIDKKKAAEVDLVSTSQGKKMRRKI 169 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (205)
+|++++|||++++.++..+. .|+..+..... ++|+++|+||+|+.. .+ .++.++++.+++.+
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~------------~v~~~~~~~~~~~~ 163 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQRH------------QVRLDMAQDWATTN 163 (208)
T ss_dssp CCEEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC-------------------CCCHHHHHHHHHHT
T ss_pred CcEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccchhhc------------cCCHHHHHHHHHHc
Confidence 99999999999999999987 89998887654 899999999999976 43 67788999999999
Q ss_pred CCceEEEcccCC-CCCHHHHHHHHHHHHHhhcc
Q psy15714 170 KAAEYLECSAKL-NEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 170 ~~~~~~~~Sa~~-~~~i~~~~~~i~~~~~~~~~ 201 (205)
+.. ++++||++ +.|++++|++|.+.+.+..+
T Consensus 164 ~~~-~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 164 TLD-FFDVSANPPGKDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp TCE-EEECCC-------CHHHHHHHHHHHHHHH
T ss_pred CCE-EEEeccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 875 99999999 99999999999998876543
No 71
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=1.1e-32 Score=193.72 Aligned_cols=162 Identities=33% Similarity=0.562 Sum_probs=143.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
+.+||+++|.+|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 45899999999999999999999999888778887777667778889999999999999999998888899999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
||++++.++..+. .|+..+.... .++|+++|+||+|+... ....++++.+++..+.. ++++||
T Consensus 82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~~~Sa 146 (166)
T 2ce2_X 82 FAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDLAAR-------------TVESRQAQDLARSYGIP-YIETSA 146 (166)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC-------------CSCHHHHHHHHHHHTCC-EEEECT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEchhhhhc-------------ccCHHHHHHHHHHcCCe-EEEecC
Confidence 9999999999986 7888887665 38999999999998763 56677888888888876 999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy15714 180 KLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~~~ 198 (205)
+++.|++++|+++.+.+.+
T Consensus 147 ~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 147 KTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988753
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-33 Score=198.40 Aligned_cols=163 Identities=29% Similarity=0.515 Sum_probs=140.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC 101 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 101 (205)
..+||+++|.+|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999999887778887776666777888889999999999999998888899999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 102 FSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
||++++.+++.+. .|+..+.+.. +++|+++|+||+|+...+ .+..+++..+++..+.. ++++|
T Consensus 82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~~S 147 (172)
T 2erx_A 82 YSITSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESPSR------------EVQSSEAEALARTWKCA-FMETS 147 (172)
T ss_dssp EETTCHHHHHTTH-HHHHHHHHHHC---CCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTCE-EEECB
T ss_pred EECcCHHHHHHHH-HHHHHHHHHhCCCCCCCEEEEEEcccccccc------------ccCHHHHHHHHHHhCCe-EEEec
Confidence 9999999998876 6766666543 589999999999997654 56777888888888875 99999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15714 179 AKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~ 198 (205)
|++|.|++++|+++.+.+..
T Consensus 148 a~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 148 AKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp TTTTBSHHHHHHHHHHTCCS
T ss_pred CCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999886543
No 73
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=1.6e-33 Score=203.66 Aligned_cols=170 Identities=20% Similarity=0.222 Sum_probs=137.4
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------cCcccccc-ceeE-EECCEEEEEEEEEcCCCccc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDY-----------VPTVFDNY-PDTI-TVDNKTYDVTLWDTAGQEDY 84 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~-----------~~t~~~~~-~~~~-~~~~~~~~~~i~D~~g~~~~ 84 (205)
......+||+++|.+|+|||||++.+. +.+...+ .+|.+..+ ...+ .+++..+.+.+||+||++.+
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 345678999999999999999996554 4444432 33444333 2333 56778899999999999999
Q ss_pred ccccccCcCCCcEEEEEEECC------CcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhcccccc
Q psy15714 85 ERLRPMSYPNTDCFLLCFSIG------STSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVS 158 (205)
Q Consensus 85 ~~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 158 (205)
+..+..+++.+|++++|||++ +.+++..+. .|+..+.....++|+++|+||+|+.. .++
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~~~~piilv~NK~Dl~~--------------~~~ 152 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTLDDVPIVIQVNKRDLPD--------------ALP 152 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCTTSSCEEEEEECTTSTT--------------CCC
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhccccCCCCEEEEEEchhccc--------------ccC
Confidence 999999999999999999999 556777776 68777755557999999999999965 467
Q ss_pred HHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714 159 TSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKS 203 (205)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 203 (205)
.++++.+++..+..+++++||++|+|++++|+++.+.+.++.+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~~ 197 (198)
T 3t1o_A 153 VEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAGG 197 (198)
T ss_dssp HHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhcC
Confidence 788999999999845999999999999999999999998877653
No 74
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.3e-32 Score=198.57 Aligned_cols=165 Identities=22% Similarity=0.437 Sum_probs=140.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEE----------------------------
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKT---------------------------- 70 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~---------------------------- 70 (205)
..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 35679999999999999999999999998887788776555 3445555544
Q ss_pred ---------EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc
Q psy15714 71 ---------YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141 (205)
Q Consensus 71 ---------~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 141 (205)
..+.+||+||++.+...+..+++.+|++++|||++++.++..+. .|+..+..... .|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~-~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLKISSN-YIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHSC-CEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHhhCC-CcEEEEEECCC-cc
Confidence 88999999999999999889999999999999999999999987 78888877654 99999999999 33
Q ss_pred CchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
.+ .+..++++.+++..+.. ++++||+++.|++++|++|.+.+.++.
T Consensus 161 ~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 161 KF------------QVDILEVQKYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp -C------------CSCHHHHHHHHHHTTCE-EEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cc------------cCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 22 67788899999998885 999999999999999999999887653
No 75
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-32 Score=199.82 Aligned_cols=167 Identities=26% Similarity=0.603 Sum_probs=144.0
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
.....+||+|+|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 345679999999999999999999999998877777777665 4567788988999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
+++|||++++.++..+. .|+..+.... .++|+++|+||+|+... .+..+++..+++.+++. +++
T Consensus 96 ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~~ 160 (213)
T 3cph_A 96 IILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMETR-------------VVTADQGEALAKELGIP-FIE 160 (213)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCSSC-------------CSCHHHHHHHHHHHTCC-EEE
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc-------------ccCHHHHHHHHHHcCCE-EEE
Confidence 99999999999999887 7888887766 57999999999999432 56777888888888876 999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
+||+++.|++++|.+|.+.+.+..
T Consensus 161 ~Sa~~~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 161 SSAKNDDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp CBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999887653
No 76
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=100.00 E-value=4.2e-32 Score=211.23 Aligned_cols=179 Identities=53% Similarity=0.969 Sum_probs=157.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
...+||+++|.+|+|||||++++.++.+...+.++++..+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 45689999999999999999999999998888888888777778889999999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 180 (205)
|||++++.++..+...|+..+....+++|+++|+||+|+...............+.++.+++..+++..+..+++++||+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 99999999999987689999988878999999999999976544333333333457889999999999998669999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy15714 181 LNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 181 ~~~~i~~~~~~i~~~~~~~ 199 (205)
+|+|++++|+++.+.++..
T Consensus 313 ~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHhcC
Confidence 9999999999999988653
No 77
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=1.1e-31 Score=193.91 Aligned_cols=165 Identities=25% Similarity=0.360 Sum_probs=131.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcc-cccccccCcCCCcE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED-YERLRPMSYPNTDC 97 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~ 97 (205)
...+||+++|.+|+|||||+++|.+. .+...+.++..+.+...+.+++..+.+.+||++|... ++.+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 34689999999999999999999963 3444444433333456778899999999999999876 55566777888999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL 175 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (205)
+++|||++++.+|+.+. .|...+.... .++|+++|+||+|+...+ .+..++++.++...+.. ++
T Consensus 84 ~i~v~dv~~~~s~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~r------------~v~~~~~~~~a~~~~~~-~~ 149 (192)
T 2cjw_A 84 YLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRXR------------EVSVSEGRAXAVVFDXK-FI 149 (192)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EE
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCeEEEEEechhhhccc------------cccHHHHHHHHHHhCCc-eE
Confidence 99999999999999987 7877776543 589999999999987543 66777888888888765 99
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
++||++|.|++++|+++.+.+...
T Consensus 150 e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 150 ETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EeccccCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999988654
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=199.46 Aligned_cols=163 Identities=26% Similarity=0.489 Sum_probs=141.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
...+||+++|.+|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 45689999999999999999999999988888888777666677788889999999999999999888889999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
|||++++.++..+. .|+..+.... .++|+++|+||+|+... .+..+++..++..++.. ++++
T Consensus 86 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~~~ 150 (199)
T 2gf0_A 86 VFSVTSKQSLEELG-PIYKLIVQIKGSVEDIPVMLVGNKCDETQR-------------EVDTREAQAVAQEWKCA-FMET 150 (199)
T ss_dssp EEETTCHHHHHTTH-HHHHHHHHHHSCGGGSCEEEEEECTTCSSC-------------SSCHHHHHHHHHHHTCE-EEEC
T ss_pred EEECcCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCCcc-------------ccCHHHHHHHHHHhCCe-EEEE
Confidence 99999999998887 5766665532 47999999999999753 56677888888888876 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHh
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
||++|.|++++|+++.+.+..
T Consensus 151 Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 151 SAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp BTTTTBSHHHHHHHHHHHCSS
T ss_pred ecCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999987644
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=5.3e-32 Score=196.07 Aligned_cols=172 Identities=15% Similarity=0.175 Sum_probs=127.2
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
.......||+|+|.+|+|||||+++|.++.+.. .+.+|.+... ..+. +..+.+.+||+||++.++..+..+++.+|
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV-ETFE--KGRVAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE-EEEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE-EEEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 456778999999999999999999999999887 7778776332 2333 34478999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhC---------CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH-HH
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHC---------PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK-MR 166 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 166 (205)
++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+....... .+....... ++
T Consensus 89 ~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~---------~~~~~~~~~~~~ 158 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVK-SEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAA---------ELVEILDLTTLM 158 (199)
T ss_dssp EEEEEEETTCGGGHHHHH-HHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHH---------HHHHHHTHHHHH
T ss_pred EEEEEEECCcHHHHHHHH-HHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHH---------HHHHHhcchhhc
Confidence 999999999999999987 5655554331 289999999999997653111 111111111 12
Q ss_pred HHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714 167 RKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKS 203 (205)
Q Consensus 167 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 203 (205)
+..+. +++++||++|+|++++|++|.+.+.+..+++
T Consensus 159 ~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~ 194 (199)
T 4bas_A 159 GDHPF-VIFASNGLKGTGVHEGFSWLQETASRQSGKA 194 (199)
T ss_dssp TTSCE-EEEECBTTTTBTHHHHHHHHHHHHHHHC---
T ss_pred cCCee-EEEEeeCCCccCHHHHHHHHHHHHHHHhccc
Confidence 33444 4999999999999999999999998876654
No 80
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-35 Score=213.27 Aligned_cols=177 Identities=55% Similarity=1.002 Sum_probs=151.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
..+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 35789999999999999999999999998888888887777767778888889999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 179 (205)
+|||++++.++..+...|+..+....+++|+++|+||+|+...............+.+..+++..+++..+..+++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 99999999999998667988888776789999999999997654333322222333567788888998888855999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy15714 180 KLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 180 ~~~~~i~~~~~~i~~~~ 196 (205)
++|+|++++|+++.+.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999998765
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=5.9e-33 Score=204.60 Aligned_cols=169 Identities=28% Similarity=0.530 Sum_probs=144.0
Q ss_pred ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCC
Q psy15714 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95 (205)
Q Consensus 17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 95 (205)
.......+||+++|.+|+|||||+++|..+.+...+.++.+... .....+++..+.+.+||+||++.+...+..+++.+
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34456789999999999999999999888877777777776555 45677888999999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL 175 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (205)
|++++|||++++.++..+. .|+..+.....++|+++|+||+|+.... . ..+...+++..+.. ++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~~-~~ 152 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK-------------V-KAKSIVFHRKKNLQ-YY 152 (221)
T ss_dssp CEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTCCEEEEEECTTSSSCS-------------S-CGGGCCHHHHHTCE-EE
T ss_pred CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCcccccc-------------c-cHHHHHHHHHcCCE-EE
Confidence 9999999999999999987 8999998888899999999999997643 1 12444566667766 99
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++||++|.|++++|+++.+.+.....
T Consensus 153 ~~Sa~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 153 DISAKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp ECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999877543
No 82
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=207.06 Aligned_cols=165 Identities=27% Similarity=0.548 Sum_probs=135.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
....+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 35679999999999999999999999988777677766555 45677889999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC 177 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+ .+..++++.+++.++.. ++++
T Consensus 110 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~v 175 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTKK------------VVDYTTAKEFADSLGIP-FLET 175 (199)
T ss_dssp EECC-CCCSHHHHHHH-HHHHHHHSCC-CCSEEEEC-CCSSCC--C------------CCCSCC-CHHHHTTTCC-BCCC
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhccCCCCEEEEEECccCCccc------------cCCHHHHHHHHHHcCCe-EEEE
Confidence 9999999999999987 7998887766 589999999999997654 56666778888888877 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHh
Q psy15714 178 SAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 178 Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
||+++.|++++|++|.+.+..
T Consensus 176 SA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 176 SAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp CC---HHHHHHHHHHTTTTTT
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999877654
No 83
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=2.2e-32 Score=201.09 Aligned_cols=168 Identities=24% Similarity=0.388 Sum_probs=139.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccce-eEEE-CCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITV-DNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
....+||+++|.+|+|||||++++.++.+...+.++.+..... .... ++..+.+.+||+||++.+...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4577999999999999999999999998877767776655532 2323 3445889999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
+++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+ .+..+++..+++..+.. +++
T Consensus 88 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~ 153 (218)
T 4djt_A 88 AILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNRQ------------KISKKLVMEVLKGKNYE-YFE 153 (218)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC----------------CCHHHHHHHTTTCCCE-EEE
T ss_pred EEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccc------------ccCHHHHHHHHHHcCCc-EEE
Confidence 99999999999999987 8988887765 469999999999997654 67778888888888876 999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
+||++|.|++++|+++.+.+....+
T Consensus 154 ~Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 154 ISAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp EBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred EecCCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999876543
No 84
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.98 E-value=2.8e-31 Score=189.84 Aligned_cols=166 Identities=19% Similarity=0.229 Sum_probs=121.3
Q ss_pred CCCccccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccc
Q psy15714 10 GGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRP 89 (205)
Q Consensus 10 ~~~~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 89 (205)
............+.+||+++|.+|+|||||++++.++.+ ..+.++.+.. ...+.+++ +.+.+||+||++.++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~ 83 (181)
T 2h17_A 8 HHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWN 83 (181)
T ss_dssp -------------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGG
T ss_pred ccccCCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHH
Confidence 333334455667889999999999999999999999988 4555666543 34556666 7899999999999999999
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH-
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR- 166 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~- 166 (205)
.+++.+|++++|||++++.++..+. .|+..+... ..++|+++|+||+|+.... ..++.....
T Consensus 84 ~~~~~~d~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~~~ 148 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKECM--------------TVAEISQFLK 148 (181)
T ss_dssp GGGTTCCEEEEEEETTCTTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCC--------------CHHHHHHHTT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHH-HHHHHHHhChhhCCCeEEEEEECCCcccCC--------------CHHHHHHHhC
Confidence 9999999999999999999999987 555555443 2689999999999997632 122222221
Q ss_pred ----HHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 167 ----RKIKAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 167 ----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
+..+. +++++||++|+|++++|++|.+.
T Consensus 149 ~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 149 LTSIKDHQW-HIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp GGGCCSSCE-EEEECBTTTTBTHHHHHHHHHTC
T ss_pred cccccCCce-EEEEccCCCCcCHHHHHHHHHhh
Confidence 11222 59999999999999999998764
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.98 E-value=3.6e-31 Score=190.41 Aligned_cols=169 Identities=17% Similarity=0.255 Sum_probs=125.4
Q ss_pred ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
.....+.+||+|+|.+|+|||||++++.++.+...+.+|.+..+. .+... .+.+.+||+||++.++..+..+++.+|
T Consensus 16 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (188)
T 1zd9_A 16 PRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVS 92 (188)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCC
Confidence 344567899999999999999999999999988777777766543 23334 478999999999999999888999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY 174 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (205)
++++|||++++.++..+. .|+..+... ..++|+++|+||+|+.......+ +........+...+ .++
T Consensus 93 ~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~---------~~~~~~~~~~~~~~-~~~ 161 (188)
T 1zd9_A 93 AIVYMVDAADQEKIEASK-NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKE---------LIEKMNLSAIQDRE-ICC 161 (188)
T ss_dssp EEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHH---------HHHHTTGGGCCSSC-EEE
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHhCcccCCCCEEEEEECCCCccCCCHHH---------HHHHhChhhhccCC-eeE
Confidence 999999999999999987 565555432 26899999999999976421100 00000000111122 348
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 175 LECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+++||++|.|++++|++|.+.+...
T Consensus 162 ~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 162 YSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp EECCTTTCTTHHHHHHHHHHTCC--
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999876543
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=3.8e-31 Score=191.89 Aligned_cols=156 Identities=20% Similarity=0.274 Sum_probs=119.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+.+||+++|++|+|||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+||+||++.++..+..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45689999999999999999999998874 456666554 35666777 789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc---------
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI--------- 169 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 169 (205)
|||++++.++..+. .|+..+... ..++|+++|+||+|+.. .++.+++..+....
T Consensus 99 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 99 LVDCADHERLLESK-EELDSLMTDETIANVPILILGNKIDRPE--------------AISEERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTCGGGTTSCEEEEEECTTSTT--------------CCCHHHHHHHHTCTTTCCCSSCC
T ss_pred EEECCCHHHHHHHH-HHHHHHHhCcccCCCcEEEEEECCCccc--------------cCCHHHHHHHhCccccccccccc
Confidence 99999999999987 676666543 26899999999999975 34455555554422
Q ss_pred -------CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 170 -------KAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 170 -------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
...+++++||++|+|++++|+++.+.
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 23459999999999999999999764
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.5e-31 Score=190.09 Aligned_cols=163 Identities=18% Similarity=0.216 Sum_probs=124.9
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCC-CCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENK-FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
....+.+||+++|.+|+|||||++++.++. +...+.+|.+. ....+.+++ +.+.+||+||++.++..+..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF-SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE-EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce-eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 345678999999999999999999999887 55566666652 234555565 68999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhC----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH--Hc-
Q psy15714 97 CFLLCFSIGSTSSYENILSKWYPELKHHC----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR--KI- 169 (205)
Q Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 169 (205)
++++|||++++.++..+. .|+..+.... .++|+++|+||+|+... ...++...... ..
T Consensus 93 ~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~ 157 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAK-EELDTLLNHPDIKHRRIPILFFANKMDLRDA--------------VTSVKVSQLLCLENIK 157 (190)
T ss_dssp EEEEEEETTCHHHHHHHH-HHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCC
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHhChhhccCCCeEEEEEeCcCcccC--------------CCHHHHHHHhChhhcc
Confidence 999999999999999987 5666554432 48999999999999753 33344444442 11
Q ss_pred -CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 170 -KAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 170 -~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
...+++++||++|.|++++|++|.+.+.+
T Consensus 158 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 158 DKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp SSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 12359999999999999999999987644
No 88
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=8.1e-32 Score=195.07 Aligned_cols=171 Identities=12% Similarity=0.138 Sum_probs=124.1
Q ss_pred ccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc---ceeEEE-CCEEEEEEEEEcCCCccccccc--
Q psy15714 15 VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY---PDTITV-DNKTYDVTLWDTAGQEDYERLR-- 88 (205)
Q Consensus 15 ~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~D~~g~~~~~~~~-- 88 (205)
.......+.+||+++|.+|+|||||++++.+.. ... ++.+... .....+ ++..+.+.+||+||++.|....
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 88 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD 88 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh
Confidence 344566788999999999999999999877643 332 3333333 122233 3566889999999999987776
Q ss_pred -ccCcCCCcEEEEEEECCCc--chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714 89 -PMSYPNTDCFLLCFSIGST--SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 89 -~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (205)
..+++++|++|+|||++++ +++..+. .|+..+....+++|+++|+||+|+........ ..+.+..+++..+
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~-----~~~~v~~~~~~~~ 162 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIE-----TQRDIHQRANDDL 162 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHH-----HHHHHHHHHHHHH
T ss_pred cccccccCCEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEeccccCchhhhhH-----HHhHHHHHHHHHH
Confidence 7899999999999999997 6666665 67776655667999999999999875432111 1125666777888
Q ss_pred HH----HcCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 166 RR----KIKAAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 166 ~~----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
++ ..++. ++++||++ +|++++|..+++.+
T Consensus 163 ~~~~~~~~~~~-~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 163 ADAGLEKLHLS-FYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHTTCTTSCEE-EEEECTTS-THHHHHHHHHHHHT
T ss_pred HHhhhhcCCcc-eEEEEech-hhHHHHHHHHHHHh
Confidence 87 55655 99999999 99999999998865
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.5e-30 Score=187.49 Aligned_cols=156 Identities=19% Similarity=0.283 Sum_probs=122.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+.+||+++|++|+|||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+||+||++.++..+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45689999999999999999999998875 345665553 34666777 789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH----------
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK---------- 168 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 168 (205)
|||++++.++..+. .|+..+... ..+.|+++|+||+|+... ++.+++.+..+.
T Consensus 97 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 1m2o_B 97 LVDAADPERFDEAR-VELDALFNIAELKDVPFVILGNKIDAPNA--------------VSEAELRSALGLLNTTGSQRIE 161 (190)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTC--------------CCHHHHHHHTTCSSCCC---CC
T ss_pred EEECCChHHHHHHH-HHHHHHHcchhhcCCCEEEEEECCCCcCC--------------CCHHHHHHHhCCcccccccccc
Confidence 99999999999987 666666443 268999999999999752 333444433322
Q ss_pred -cCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 169 -IKAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 169 -~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
....+++++||++|+|++++|+++.+.
T Consensus 162 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 162 GQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 123459999999999999999998753
No 90
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.4e-30 Score=184.11 Aligned_cols=164 Identities=19% Similarity=0.233 Sum_probs=124.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+.+||+++|++|+|||||++++.++.+.. +.+|.+.. ...+.+++ ..+.+||+||++.++..+..+++.+|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN-VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE-EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc-eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 456899999999999999999999988754 45555432 23455554 779999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhh-C-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHH-C-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
|||++++.++..+. .|+..+... . .++|+++|+||+|+....... .+........++..+. +++++|
T Consensus 81 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~S 149 (171)
T 1upt_A 81 VVDSCDRDRIGISK-SELVAMLEEEELRKAILVVFANKQDMEQAMTSS---------EMANSLGLPALKDRKW-QIFKTS 149 (171)
T ss_dssp EEETTCCTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---------HHHHHHTGGGCTTSCE-EEEECC
T ss_pred EEECCCHHHHHHHH-HHHHHHHhchhhCCCEEEEEEECCCCcCCCCHH---------HHHHHhCchhccCCce-EEEECc
Confidence 99999999999987 455544332 2 689999999999997643110 1111111112223344 599999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15714 179 AKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~~ 199 (205)
|++|+|++++|+++.+.+.++
T Consensus 150 a~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 150 ATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHHHHhhc
Confidence 999999999999999988654
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=2.7e-31 Score=186.65 Aligned_cols=160 Identities=17% Similarity=0.206 Sum_probs=119.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS 103 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 103 (205)
+||+++|++|+|||||++++.++.+.. +.||.+.. ...+..+ .+.+.+||+||++.++..+..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999888764 45565522 2334333 3789999999999999988889999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714 104 IGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL 181 (205)
Q Consensus 104 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 181 (205)
++++.++..+. .|+..+... ..++|+++|+||+|+....... .+........++..+ .+++++||++
T Consensus 77 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 145 (164)
T 1r8s_A 77 SNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNAMNAA---------EITDKLGLHSLRHRN-WYIQATCATS 145 (164)
T ss_dssp TTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---------HHHHHTTGGGCSSCC-EEEEECBTTT
T ss_pred CCCHHHHHHHH-HHHHHHHhchhhcCCeEEEEEECcCCcCCCCHH---------HHHHHhCcccccCcc-EEEEEcccCC
Confidence 99999999987 566655442 2689999999999997642100 011111111111122 3489999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy15714 182 NEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~~~ 198 (205)
|.|++++|+++.+.+.+
T Consensus 146 ~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 146 GDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp TBTHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.5e-30 Score=185.75 Aligned_cols=161 Identities=20% Similarity=0.275 Sum_probs=123.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+.+||+++|.+|+|||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+||+||++.++..+..+++.+|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 56799999999999999999999998876 556666533 34556666 789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH-----HcCCce
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR-----KIKAAE 173 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 173 (205)
|||++++.++..+. .|+..+... ..+.|+++|+||+|+... ...++...... ..+. +
T Consensus 90 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~-~ 153 (187)
T 1zj6_A 90 VVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKEC--------------MTVAEISQFLKLTSIKDHQW-H 153 (187)
T ss_dssp EEETTCTTTHHHHH-HHHHHHHTSGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCCSSCE-E
T ss_pred EEeCCCHHHHHHHH-HHHHHHHhchhhCCCeEEEEEECCCCcCC--------------CCHHHHHHHhChhhhcCCCc-E
Confidence 99999999999987 676666554 268999999999999753 22233322221 2233 5
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
++++||++|+|++++|++|.+.+.....
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 154 IQACCALTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred EEEccCCCCcCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998765443
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=5.3e-30 Score=183.80 Aligned_cols=159 Identities=16% Similarity=0.210 Sum_probs=124.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+.+||+++|++|+|||||++++.++. ...+.+|.+.. ...+.+++ ..+.+||+||++.++..+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 567999999999999999999999988 56667776633 33455555 779999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH-----HHcCCce
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR-----RKIKAAE 173 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 173 (205)
|||++++.++..+. .|+..+... ..++|+++|+||+|+..... .++..+.. +..+ .+
T Consensus 92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~-~~ 155 (186)
T 1ksh_A 92 VVDSADRQRMQDCQ-RELQSLLVEERLAGATLLIFANKQDLPGALS--------------CNAIQEALELDSIRSHH-WR 155 (186)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSC-EE
T ss_pred EEECcCHHHHHHHH-HHHHHHHhChhcCCCcEEEEEeCccCCCCCC--------------HHHHHHHhChhhccCCc-eE
Confidence 99999999999987 565555443 26899999999999976421 12221111 1223 35
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
++++||++|+|++++|+++.+.+.++
T Consensus 156 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 156 IQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999987643
No 94
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.8e-30 Score=184.62 Aligned_cols=161 Identities=18% Similarity=0.221 Sum_probs=122.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+.+||+++|++|+|||||++++.++.+ ..+.+|.+.. ...+.+++ ..+.+||+||++.++..+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5679999999999999999999998887 4455665533 34555665 789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc----CCceE
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI----KAAEY 174 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 174 (205)
|||++++.++..+. .|+..+... ..++|+++|+||+|+.... ..++........ ...++
T Consensus 92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 92 VVDSTDKDRMSTAS-KELHLMLQEEELQDAALLVFANKQDQPGAL--------------SASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp EEETTCTTTHHHHH-HHHHHHTTSSTTSSCEEEEEEECTTSTTCC--------------CHHHHHHHTTTTTCCSSCEEE
T ss_pred EEECCCHHHHHHHH-HHHHHHHcChhhCCCeEEEEEECCCCCCCC--------------CHHHHHHHhCcccccCCceEE
Confidence 99999999999987 666666554 3689999999999997632 122222221111 12259
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 175 LECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
+++||++|+|++++|+++.+.+.+++
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999987654
No 95
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=2.1e-29 Score=182.75 Aligned_cols=165 Identities=32% Similarity=0.529 Sum_probs=140.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
...+||+++|++|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.++..+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 4578999999999999999999999998777777776554 457788999999999999999999988888889999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
+|||+++..++.++. .|+..+.... .+.|+++++||+|+...+ .+..++++.++...++. ++++|
T Consensus 83 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~------------~~~~~~a~~l~~~~~~~-~~d~S 148 (199)
T 2f9l_A 83 LVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLR------------AVPTDEARAFAEKNNLS-FIETS 148 (199)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EEECC
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECccccccc------------CcCHHHHHHHHHHcCCe-EEEEe
Confidence 999999999998876 7887776654 579999999999997643 56667888999888876 99999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15714 179 AKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~~ 199 (205)
|+++.|++++|+++.+.+...
T Consensus 149 al~~~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTEIYRI 169 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=1.5e-30 Score=187.19 Aligned_cols=165 Identities=19% Similarity=0.197 Sum_probs=124.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
.+.+||+++|++|+|||||++++..+.+.. +.+|.+.. ...+..++ +.+.+||+||++.++..+..+++.+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 467999999999999999999999888754 45555422 33455554 789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
|||+++++++..+. .|+..+.... .+.|+++|+||+|+....... .+........++..+. +++++|
T Consensus 96 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~S 164 (189)
T 2x77_A 96 VVDSTDRDRMGVAK-HELYALLDEDELRKSLLLIFANKQDLPDAASEA---------EIAEQLGVSSIMNRTW-TIVKSS 164 (189)
T ss_dssp EEETTCCTTHHHHH-HHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHH---------HHHHHTTGGGCCSSCE-EEEECC
T ss_pred EEeCCCHHHHHHHH-HHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHH---------HHHHHhChhhccCCce-EEEEcc
Confidence 99999999999987 5555554332 689999999999997642110 1111111111122233 599999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhc
Q psy15714 179 AKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~~~ 200 (205)
|++++|++++|+++.+.+.+.+
T Consensus 165 a~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 165 SKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHHHTC
T ss_pred CCCccCHHHHHHHHHHHHHhcc
Confidence 9999999999999999987654
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2e-30 Score=185.52 Aligned_cols=159 Identities=20% Similarity=0.286 Sum_probs=121.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL 100 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 100 (205)
...+||+++|++|+|||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+||+||++.++..+..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE-EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 56799999999999999999999988653 345555532 33455665 779999999999999988889999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH-----HHHcCCce
Q psy15714 101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM-----RRKIKAAE 173 (205)
Q Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 173 (205)
|||++++.++..+. .|+..+... ..++|+++|+||+|+..... .++.... +...+ .+
T Consensus 90 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~-~~ 153 (181)
T 1fzq_A 90 VIDSADRKRFEETG-QELTELLEEEKLSCVPVLIFANKQDLLTAAP--------------ASEIAEGLNLHTIRDRV-WQ 153 (181)
T ss_dssp EEETTCGGGHHHHH-HHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSC-EE
T ss_pred EEECcCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcCcccCCC--------------HHHHHHHhCchhccCCc-eE
Confidence 99999999999987 566555332 26899999999999976431 1111111 11122 35
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
++++||++|+|++++|+++.+.+.++
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 154 IQSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTC---
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999887654
No 98
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=5.9e-31 Score=189.98 Aligned_cols=164 Identities=17% Similarity=0.184 Sum_probs=118.0
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
...+.+||+++|++|+|||||++++..+.+.. +.+|.+.. ...+..++ +.+.+||+||++.++..+..+++.+|++
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEE-EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCcee-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 45678999999999999999999999888753 34554422 23444444 7899999999999999888899999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
++|||++++.++..+. .|+..+.... .++|+++|+||+|+....... .+........++..+ .++++
T Consensus 101 ilv~D~~~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~---------~i~~~~~~~~~~~~~-~~~~~ 169 (192)
T 2b6h_A 101 IFVVDSNDRERVQESA-DELQKMLQEDELRDAVLLVFANKQDMPNAMPVS---------ELTDKLGLQHLRSRT-WYVQA 169 (192)
T ss_dssp EEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---------HHHHHTTGGGCSSCC-EEEEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHhcccccCCCeEEEEEECCCCCCCCCHH---------HHHHHhCcccccCCc-eEEEE
Confidence 9999999999999987 6666554422 689999999999997642100 111111111111222 34899
Q ss_pred cccCCCCCHHHHHHHHHHHHH
Q psy15714 177 CSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
+||++|.|++++|+++.+.+.
T Consensus 170 ~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 170 TCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp CBTTTTBTHHHHHHHHHHHTT
T ss_pred CcCCCcCCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=5e-31 Score=189.09 Aligned_cols=170 Identities=19% Similarity=0.287 Sum_probs=122.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC--CCCCCCcCccccccc-eeEEE---CCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN--KFPTDYVPTVFDNYP-DTITV---DNKTYDVTLWDTAGQEDYERLRPMSYPNTD 96 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 96 (205)
.+||+++|++|+|||||++++.+. .+...+.+|.+..+. ..+.+ ++..+.+.+||++|++.|+.+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 455556666655442 22222 345678999999999999998888899999
Q ss_pred EEEEEEECCCc-chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc---
Q psy15714 97 CFLLCFSIGST-SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA--- 172 (205)
Q Consensus 97 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 172 (205)
++++|||++++ .++..+. .|+..+....++.|+++|+||+|+...+... ....+.+..+++..+..
T Consensus 82 ~~i~v~d~~~~~~s~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 151 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMK-PWLFNIKARASSSPVILVGTHLDVSDEKQRK---------ACMSKITKELLNKRGFPAIR 151 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHH-HHHHHHHHHCTTCEEEEEEECGGGCCHHHHH---------HHHHHHHHHTTTCTTSCEEE
T ss_pred EEEEEEeCCcchhHHHHHH-HHHHHHHhhCCCCcEEEEEECCCcccchhhH---------HHHHHHHHHHHHhcCCcchh
Confidence 99999999997 5788876 8998887776789999999999997643110 01134456666666664
Q ss_pred eEEEcccCCCC-CHHHHHHHHHHHHHhhccc
Q psy15714 173 EYLECSAKLNE-GLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 173 ~~~~~Sa~~~~-~i~~~~~~i~~~~~~~~~~ 202 (205)
+++++||+++. +++++++.+.+.+.+.+..
T Consensus 152 ~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~~ 182 (184)
T 2zej_A 152 DYHFVNATEESDALAKLRKTIINESLNFKIR 182 (184)
T ss_dssp EEEECCTTSCCHHHHHHHHHHHHHHHCC---
T ss_pred heEEEecccCchhHHHHHHHHHHHHhccccC
Confidence 38999999996 9999999999888765443
No 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=8e-29 Score=178.66 Aligned_cols=164 Identities=31% Similarity=0.507 Sum_probs=142.2
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC 97 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 97 (205)
.....++|+++|++|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|.+++...+..+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 345679999999999999999999999998877788877665 5678889999999999999999998888888899999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714 98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176 (205)
Q Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (205)
+++|||+++..+++++. .|+..+.... .+.|+++++||+|+.... ....++++.++...++. +++
T Consensus 105 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~------------~~~~~~a~~l~~~~~~~-~ld 170 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLR------------AVPTDEARAFAEKNGLS-FIE 170 (191)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEE
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEE
Confidence 99999999999988876 6887776544 578999999999997643 55677889999988876 999
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q psy15714 177 CSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 177 ~Sa~~~~~i~~~~~~i~~~~ 196 (205)
+||+++.|++++|+++.+.+
T Consensus 171 ~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 171 TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998765
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.5e-29 Score=190.26 Aligned_cols=163 Identities=20% Similarity=0.306 Sum_probs=124.1
Q ss_pred ccceeeEEEEECCC---------CCCHHHHHHHHhc---CCCCCCCcCcc-cccc-ceeE--------------EECCEE
Q psy15714 19 SVHKALKVTTVGDG---------MVGKTCLLITHTE---NKFPTDYVPTV-FDNY-PDTI--------------TVDNKT 70 (205)
Q Consensus 19 ~~~~~~ki~v~G~~---------~~GKstli~~~~~---~~~~~~~~~t~-~~~~-~~~~--------------~~~~~~ 70 (205)
.....+||+++|.+ |+|||||+++|.+ +.+...+.+++ +..+ ...+ .+++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 35677999999999 9999999999999 56666666665 2222 1211 256778
Q ss_pred EEEEEEE-----------------------cCCCcccccccccCcC---------------------CCcEEEEEEECCC
Q psy15714 71 YDVTLWD-----------------------TAGQEDYERLRPMSYP---------------------NTDCFLLCFSIGS 106 (205)
Q Consensus 71 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~ 106 (205)
+.+.||| ++|+++|+.++..++. ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 9999999 7788888888888887 7999999999999
Q ss_pred c--chHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc-CCceEEEcccCC
Q psy15714 107 T--SSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI-KAAEYLECSAKL 181 (205)
Q Consensus 107 ~--~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~ 181 (205)
+ .+++.+. .|+..+... ..++|+++|+||+|+...+ .+ ++++.+++.. +. +++++||++
T Consensus 175 ~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~------------~v--~~~~~~~~~~~~~-~~~e~SAk~ 238 (255)
T 3c5h_A 175 GMNRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTKCDEGVER------------YI--RDAHTFALSKKNL-QVVETSARS 238 (255)
T ss_dssp ----CHHHHH-HHHHHHHHHHHHTTCCEEEEEECGGGBCHH------------HH--HHHHHHHHTSSSC-CEEECBTTT
T ss_pred CchhhHHHHH-HHHHHHHHHhccCCCCEEEEEEcccccccH------------HH--HHHHHHHHhcCCC-eEEEEECCC
Confidence 8 9999987 788887665 2689999999999996543 22 5677777764 55 499999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy15714 182 NEGLDQVFIAAVRSAV 197 (205)
Q Consensus 182 ~~~i~~~~~~i~~~~~ 197 (205)
|.|++++|++|.+.+.
T Consensus 239 g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 239 NVNVDLAFSTLVQLID 254 (255)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999988763
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=4.7e-28 Score=172.22 Aligned_cols=161 Identities=23% Similarity=0.255 Sum_probs=121.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
..+.++|+++|++|+|||||++++.++.+...+.++..... ...+.+++. .+.+||+||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 35678999999999999999999999988776666554444 456677774 578999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH-------HcC-
Q psy15714 99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR-------KIK- 170 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~- 170 (205)
++|||+++....... .++..+.. .++|+++|+||+|+..... ++...... .++
T Consensus 83 i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~~---------------~~~~~~~~~~~~~~~~~~~ 143 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEANP---------------DRVMQELMEYNLVPEEWGG 143 (178)
T ss_dssp EEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSCH---------------HHHHHHHTTTTCCBTTTTS
T ss_pred EEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCCH---------------HHHHHHHHhcCcChhHcCC
Confidence 999999885433332 23333333 3899999999999976421 11111111 111
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
..+++++||++|+|++++|++|.+.+...+.
T Consensus 144 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 144 DTIFCKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred cccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 1359999999999999999999998776544
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=2.8e-29 Score=183.91 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=118.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCE-EEEEEEEEcCCCccccc-ccccCcCCCcEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNK-TYDVTLWDTAGQEDYER-LRPMSYPNTDCF 98 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~ 98 (205)
.+.+||+++|++|+|||||+++|.++.+...+.++..... .+.+++. .+.+.+||+||++.++. ++..+++.+|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 4678999999999999999999999998777665443222 2555543 57899999999999988 778889999999
Q ss_pred EEEEECCCcc-hHHHHHHHHHHHHhhh---CCCCCEEEEeeCcccccCchhhhhhhhh----------cccc--------
Q psy15714 99 LLCFSIGSTS-SYENILSKWYPELKHH---CPKVPIILVGTKADLRSENKTIDKKKAA----------EVDL-------- 156 (205)
Q Consensus 99 i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------~~~~-------- 156 (205)
++|||+++.. ++......|...+... ..++|+++|+||+|+............. ....
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~ 162 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence 9999999854 4666665666666542 2579999999999998654321111000 0001
Q ss_pred ----ccHHHHHHHHHHcC--CceEEEcccCCC------CCHHHHHHHHHHH
Q psy15714 157 ----VSTSQGKKMRRKIK--AAEYLECSAKLN------EGLDQVFIAAVRS 195 (205)
Q Consensus 157 ----~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~ 195 (205)
+..++++.++.... ..++++|||++| +|++++|++|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11111112221111 445999999999 9999999999875
No 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=191.84 Aligned_cols=166 Identities=18% Similarity=0.228 Sum_probs=117.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
..+.+||+|+|.+|+|||||+++|.++.+...+ +|.+..+ ..+...+ +.+.|||+||++.+..++..+++.+|++|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~-~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE-EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE-EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 456789999999999999999999998875432 4443332 2333444 78999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 178 (205)
+|||++++.++..+...|...+.... .++|++||+||+|+........ +..+.....++..+ .+++++|
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~---------i~~~~~~~~~~~~~-~~~~~vS 307 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE---------ITDKLGLHSLRHRN-WYIQATC 307 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH---------HHHHHTCTTCCSSC-EEEEECB
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHH---------HHHHhchhhhhcCC-CEEEEEE
Confidence 99999999999998855555555443 6899999999999976431110 00111111111122 3499999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15714 179 AKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~~~~~ 199 (205)
|++|.|++++|++|.+.+.++
T Consensus 308 Ak~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 308 ATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp TTTTBTHHHHHHHHHHHHTC-
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999987654
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=3.5e-28 Score=171.28 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=112.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccc-cccceeEEECCEEEEEEEEEcCCCccccc------ccccCcC-
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF-DNYPDTITVDNKTYDVTLWDTAGQEDYER------LRPMSYP- 93 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~- 93 (205)
+.++|+++|++|+|||||++++.+..+.....++.. ......+.+++ ..+.+||+||+..+.. +...++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 458999999999999999999998776443334332 22234455666 5799999999987752 2244443
Q ss_pred -CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714 94 -NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172 (205)
Q Consensus 94 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (205)
+++++++|+|+++.++ .. .|+..+... ++|+++|+||+|+...+ .+.. ++..+++.++..
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~-~~~~~~~~~--~~p~ilv~nK~Dl~~~~------------~~~~-~~~~~~~~~~~~ 140 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NL-YLTLQLMEM--GANLLLALNKMDLAKSL------------GIEI-DVDKLEKILGVK 140 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HH-HHHHHHHHT--TCCEEEEEECHHHHHHT------------TCCC-CHHHHHHHHTSC
T ss_pred CCCCEEEEEecCCchhH---hH-HHHHHHHhc--CCCEEEEEEchHhcccc------------Chhh-HHHHHHHHhCCC
Confidence 7999999999987543 33 576666654 89999999999986532 2322 356777777766
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
++++||++|+|++++|+++.+.+
T Consensus 141 -~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 141 -VVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp -EEECBGGGTBSHHHHHHHHHHHT
T ss_pred -EEEEEcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998765
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=2.4e-28 Score=188.20 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=127.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC---CCCcCccccccceeEEECCEEEEEEEEEcCCCccc-----ccccccCcC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFP---TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY-----ERLRPMSYP 93 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~ 93 (205)
..+||+++|.+|+|||||++++.++... ..+.+|.+..+. .+.+++ .+.+.+||+||++.+ +..+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 3589999999999999999999987332 123344443332 334434 578999999999988 677788889
Q ss_pred CCcEEEEEEECCCcchHHHHHHHHH---HHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 94 NTDCFLLCFSIGSTSSYENILSKWY---PELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 94 ~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
++|++|+|||++++.+++++. .|. ..+....+++|+++|+||+|+......... ..+..++++.+++.++
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~-~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~------~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREEL------FQIMMKNLSETSSEFG 152 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHH-HHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH------HHHHHHHHHHHHHTTT
T ss_pred cCCEEEEEEECCChhhHHHHH-HHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHH------HHHHHHHHHHHHHHcC
Confidence 999999999999999999886 554 444445578999999999999863211000 0266788899999998
Q ss_pred C--ceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 171 A--AEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 171 ~--~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
. .+++++||++ .++.++|..+++.++.
T Consensus 153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 153 FPNLIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp CCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred CCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 4 5699999999 8999999998876543
No 107
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=2.6e-29 Score=192.53 Aligned_cols=163 Identities=14% Similarity=0.138 Sum_probs=120.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CCcCccccccceeEEECCEEEEEEEEEcCCCccccc---ccccCcCCCcEE
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPT---DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER---LRPMSYPNTDCF 98 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~ 98 (205)
||+++|+.|+|||||++++.++.+.. .+.+|++..+.. ++ ..++++||||+|+++|+. .+..++++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999887664432 245565555432 22 347899999999999974 357889999999
Q ss_pred EEEEECCCc--chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH----cCCc
Q psy15714 99 LLCFSIGST--SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK----IKAA 172 (205)
Q Consensus 99 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 172 (205)
|+|||++++ +++..+. .|+..+....+++|+++++||+|+......... .+.+..++++++++. .++.
T Consensus 77 IlV~Ditd~~~~~~~~l~-~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~-----~R~V~~~~~~~la~~~~~~~~i~ 150 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNLA-MIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDA-----QRDIMQRTGEELLELGLDGVQVS 150 (331)
T ss_dssp EEECCCSSCTTHHHHHHH-HHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHH-----HHHHHHHHHHTTSSSSCSCCCEE
T ss_pred EEEEECCchHHHHHHHHH-HHHHHHhhcCCCCcEEEEEECcccCchhhhhhH-----HHHhhHHHHHHHHhhcccccCce
Confidence 999999998 2233332 345555555689999999999999765321110 125777788888876 4555
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
|++|||++ .++.++|..+++.++..
T Consensus 151 -f~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 151 -FYLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp -EECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred -EEEeccCC-CcHHHHHHHHHHHHHhh
Confidence 99999987 69999999999887654
No 108
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.6e-27 Score=176.30 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=115.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-CcCccccccceeEEECCEEEEEEEEEcCCCc------c----cccccc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTD-YVPTVFDNYPDTITVDNKTYDVTLWDTAGQE------D----YERLRP 89 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~------~----~~~~~~ 89 (205)
...+||+|+|.+|+|||||+++|.++.+... +..++..........++ ..+.+||+||+. . +..+ .
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~-~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTI-T 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHH-H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHH-H
Confidence 5679999999999999999999999876421 11111111122233344 679999999983 3 2222 2
Q ss_pred cCcCCCcEEEEEEECCCcchHHHH-HHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHH---HHHHH
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENI-LSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS---QGKKM 165 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~ 165 (205)
.++..+|++++|||++++.++... ...|+..+....+++|+++|+||+|+...+ .+..+ ....+
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~ 171 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD------------SLSIDNKLLIKQI 171 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--------------CCCHHHHHHHHHH
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch------------hhHHHHHHHHHHH
Confidence 346788999999999998776421 125666666655689999999999997654 33332 45666
Q ss_pred HHHcC-CceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 166 RRKIK-AAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 166 ~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
++..+ ..+++++||++|+|++++|++|.+.+.+.+
T Consensus 172 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 172 LDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp HHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 66665 234999999999999999999999887653
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=5.4e-27 Score=191.82 Aligned_cols=164 Identities=18% Similarity=0.198 Sum_probs=121.4
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF 98 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 98 (205)
...+.+||+++|.+++|||||+++|.++.+.. +.+|.+..+. .+...+ +.+.||||||++.++.++..+++.+|++
T Consensus 318 ~~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~-~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE-EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred ccccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE-EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 34567999999999999999999999998654 3455544432 333444 7899999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHH-hhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH----cCCc
Q psy15714 99 LLCFSIGSTSSYENILSKWYPEL-KHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK----IKAA 172 (205)
Q Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 172 (205)
|+|||++++.++..+. .|+..+ .... .++|++||+||+|+..... ..+....... ....
T Consensus 394 i~V~D~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~ 458 (497)
T 3lvq_E 394 IFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMK--------------PHEIQEKLGLTRIRDRNW 458 (497)
T ss_dssp EEEEETTCGGGHHHHH-HHHHHHHTSGGGTTCEEEEEEECCSSSSCCC--------------HHHHHHHTTCTTCCSSCE
T ss_pred EEEEECcchhHHHHHH-HHHHHHhhhhhcCCCcEEEEEECCCCCcCCC--------------HHHHHHHhchhhhhcCCe
Confidence 9999999999999987 454444 3322 5899999999999976421 1111111100 1123
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
+++++||++|+|++++|++|.+.+....+
T Consensus 459 ~~~~~SA~~g~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 459 YVQPSCATSGDGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHCC----
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 48999999999999999999988765443
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=2.2e-27 Score=171.27 Aligned_cols=162 Identities=15% Similarity=0.186 Sum_probs=108.9
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCC----------Ccccccc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAG----------QEDYERL 87 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 87 (205)
.....++|+|+|.+|+|||||++++.++.+...+.++.+.... .....++ .+.+||+|| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 3456799999999999999999999998866655555554443 2233443 589999999 6667766
Q ss_pred cccCcCCC---cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714 88 RPMSYPNT---DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK 164 (205)
Q Consensus 88 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (205)
+..+++.+ |++++|+|++++.++... .++..+... ++|+++|+||+|+...+.. ....++...
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~----------~~~~~~~~~ 161 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKYY--GIPVIVIATKADKIPKGKW----------DKHAKVVRQ 161 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGGH----------HHHHHHHHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChHHH----------HHHHHHHHH
Confidence 66666555 999999999998877764 344444443 8999999999999765411 011123333
Q ss_pred HHHHcCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 165 MRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 165 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
........+++++||++++|++++|+++.+.+.
T Consensus 162 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 162 TLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 122223345999999999999999999988763
No 111
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=3.3e-27 Score=170.07 Aligned_cols=163 Identities=17% Similarity=0.105 Sum_probs=116.3
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCC----------Cccccccc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG----------QEDYERLR 88 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 88 (205)
.....+||+++|.+|+|||||++++.+..+ ..+.++.+..........+ ..+.+||+|| ++.++.++
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHH
Confidence 345678999999999999999999999874 3334444444332222112 2578999999 55666665
Q ss_pred ccCcCC---CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714 89 PMSYPN---TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 89 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (205)
..+++. ++++++|+|+++..+.... .+...+... ++|+++|+||+|+...... ....++++.+
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~----------~~~~~~~~~~ 161 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSER----------AKKLEEHRKV 161 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGGH----------HHHHHHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHHH----------HHHHHHHHHH
Confidence 555554 4999999999877554433 233444444 8999999999999754321 3445667777
Q ss_pred HHHcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 166 RRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 166 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
+...+..+++++||++|+|++++|+++.+.+.+
T Consensus 162 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 162 FSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 777665569999999999999999999987753
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=5.4e-27 Score=164.02 Aligned_cols=150 Identities=19% Similarity=0.168 Sum_probs=106.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCccc-------ccccccCcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY-------ERLRPMSYPN 94 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 94 (205)
.||+++|++|+|||||++++.++.+. ..+.++........+..++. .+.+||+||+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999988753 23333333333445666664 6899999998873 3445567899
Q ss_pred CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714 95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY 174 (205)
Q Consensus 95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (205)
+|++++|+|+++..+.... .+...+... ++|+++|+||+|+.... +++..++ ..+..++
T Consensus 80 ~~~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~p~ilv~nK~Dl~~~~----------------~~~~~~~-~~~~~~~ 138 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADY--EVAEYLRRK--GKPVILVATKVDDPKHE----------------LYLGPLY-GLGFGDP 138 (161)
T ss_dssp CSEEEEEEESSSCCCHHHH--HHHHHHHHH--TCCEEEEEECCCSGGGG----------------GGCGGGG-GGSSCSC
T ss_pred CCEEEEEEECCCcccHhHH--HHHHHHHhc--CCCEEEEEECcccccch----------------HhHHHHH-hCCCCCe
Confidence 9999999999986554331 344444444 89999999999997642 1122233 4566459
Q ss_pred EEcccCCCCCHHHHHHHHHHHH
Q psy15714 175 LECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 175 ~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
+++||++|.|++++|+++.+.+
T Consensus 139 ~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 139 IPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp EECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEecccCCChHHHHHHHHHhC
Confidence 9999999999999999998764
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=2.1e-27 Score=170.53 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=117.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCC-----------CcccccccccCc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG-----------QEDYERLRPMSY 92 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~ 92 (205)
+||+++|++|+|||||++++.++.+...+.++.... ...+... .+.+||+|| ++.++..+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999998876655543222 2333333 589999999 566777666676
Q ss_pred CC-CcEEEEEEECCCcchHHHHHHHHHHH---------HhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714 93 PN-TDCFLLCFSIGSTSSYENILSKWYPE---------LKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ 161 (205)
Q Consensus 93 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~---------~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (205)
+. +++++++|++.|..++.++...|... +.... .++|+++|+||+|+.... .++
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---------------~~~ 141 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---------------QEV 141 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---------------HHH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---------------HHH
Confidence 66 77777777777777887775567542 12111 589999999999987642 456
Q ss_pred HHHHHHHcCCc------eEEEcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714 162 GKKMRRKIKAA------EYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202 (205)
Q Consensus 162 ~~~~~~~~~~~------~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 202 (205)
++.+++.++.. +++++||++|+|++++|+++.+.+...+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 142 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 67777777763 379999999999999999999998776543
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=5e-27 Score=168.46 Aligned_cols=159 Identities=15% Similarity=0.117 Sum_probs=117.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccc-ccceeEEECCEEEEEEEEEcCCCcccc------cccccCc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFD-NYPDTITVDNKTYDVTLWDTAGQEDYE------RLRPMSY 92 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~ 92 (205)
+.+.++|+++|++|+|||||++++.+..+.....++... .....+..++ ..+.+||+||++.+. .++..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 346799999999999999999999987653332333222 2234455565 679999999998774 2344444
Q ss_pred C--CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 93 P--NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 93 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
. .++++++|+|+++ ++... .|+..+... +.|+++|+||+|+.... .+. ++++.+++.++
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~-~~~~~~~~~--~~piilv~nK~Dl~~~~------------~~~-~~~~~~~~~~~ 142 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNL-YLTLQLMEM--GANLLLALNKMDLAKSL------------GIE-IDVDKLEKILG 142 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHH-HHHHHHHTT--TCCEEEEEECHHHHHHT------------TCC-CCHHHHHHHHT
T ss_pred hccCCCEEEEEecchh---HHHHH-HHHHHHHhc--CCCEEEEEEhhhccccc------------cch-HHHHHHHHHhC
Confidence 3 5899999999875 44444 677766654 89999999999986543 222 35667777778
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
.. ++++||+++.|++++|+++.+.+....
T Consensus 143 ~~-~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 143 VK-VVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp SC-EEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred CC-eEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 76 999999999999999999999876544
No 115
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=1.6e-27 Score=196.41 Aligned_cols=164 Identities=21% Similarity=0.266 Sum_probs=123.7
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccccee-------E--EECCEEEEEEEEEcCCCcccccccc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-------I--TVDNKTYDVTLWDTAGQEDYERLRP 89 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~-------~--~~~~~~~~~~i~D~~g~~~~~~~~~ 89 (205)
.....+||+++|.+|+|||||++++.++.+...+.+|++..+... + ..++..+.+.+||+||++.++.+..
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 456789999999999999999999999998877778776665321 1 1233457899999999999999998
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI 169 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (205)
.+++.+|++|+|||+++.+ .+. .|+..+..+.++.|+++|+||+|+...+ .+..++++.++...
T Consensus 117 ~~l~~~d~ii~V~D~s~~~---~~~-~~~~~l~~~~~~~pvilV~NK~Dl~~~~------------~v~~~~~~~~~~~~ 180 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDS---NKH-YWLRHIEKYGGKSPVIVVMNKIDENPSY------------NIEQKKINERFPAI 180 (535)
T ss_dssp HHHHSSEEEEEEECGGGGG---GHH-HHHHHHHHHSSSCCEEEEECCTTTCTTC------------CCCHHHHHHHCGGG
T ss_pred HHccCCcEEEEEEeCCCch---hHH-HHHHHHHHhCCCCCEEEEEECCCccccc------------ccCHHHHHHHHHhc
Confidence 8999999999999997653 344 7888898887789999999999997654 66777888888888
Q ss_pred CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+.. ++++||++|.|++++|+++.+.+...
T Consensus 181 ~~~-~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 181 ENR-FHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp TTC-EEECCC-----CTTHHHHHHHHHTCT
T ss_pred CCc-eEEEecCcccCHHHHHHHHHHHHhcc
Confidence 876 99999999999999999999987654
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=2.2e-26 Score=163.20 Aligned_cols=153 Identities=24% Similarity=0.254 Sum_probs=110.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc--------cccC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL--------RPMS 91 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 91 (205)
...||+++|.+|+|||||++++.+..+. ..+.++........+.+++. .+.+||+||...+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3479999999999999999999987642 33344434444556777774 4889999998653211 1135
Q ss_pred cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
++.+|++++|||++++.++... .|+..+.... .++|+++|+||+|+..... .. ++..
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----------~~--------~~~~- 138 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGETL-----------GM--------SEVN- 138 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----------EE--------EEET-
T ss_pred HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcchh-----------hh--------hhcc-
Confidence 7899999999999998887643 6777776654 5799999999999864310 00 0112
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
..+++++||++|.|++++|+++.+.+..
T Consensus 139 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 139 GHALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 2359999999999999999999887543
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=1.2e-25 Score=173.28 Aligned_cols=164 Identities=18% Similarity=0.116 Sum_probs=124.7
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCCCcccc----------c
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE----------R 86 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~ 86 (205)
.+...-.|+++|.+|+|||||++++.+.++.. ....++..........+ ...++.+|||||...+. .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence 45667899999999999999999999988753 22223222222233344 13679999999986544 3
Q ss_pred ccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH
Q psy15714 87 LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR 166 (205)
Q Consensus 87 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (205)
....++..+|++++|+|+++..+..+.. .|+..+... ++|+++|+||+|+.... ....+....+.
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~-~~~~~l~~~--~~pvilV~NK~Dl~~~~------------~~~~~~~~~l~ 149 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEE-IYQNFIKPL--NKPVIVVINKIDKIGPA------------KNVLPLIDEIH 149 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHTGGG--CCCEEEEEECGGGSSSG------------GGGHHHHHHHH
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHH-HHHHHHHhc--CCCEEEEEECccCCCCH------------HHHHHHHHHHH
Confidence 4456788999999999999998888865 678888775 89999999999997332 44456667777
Q ss_pred HHcC-CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 167 RKIK-AAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 167 ~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
+.++ ..+++++||++|.|++++|+++.+.+..
T Consensus 150 ~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 150 KKHPELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp HHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred HhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 7774 4559999999999999999999987654
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=8.5e-26 Score=169.85 Aligned_cols=155 Identities=19% Similarity=0.149 Sum_probs=115.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-ccccccceeEEECCEEEEEEEEEcCCCccccccc------ccCc-
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVP-TVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR------PMSY- 92 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~- 92 (205)
.+.++|+++|++|+|||||+++|.+..+.....+ ++.......+..++ ..+.+||+||...+...+ +.++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4678999999999999999999998775322122 21111122333444 689999999998776532 3444
Q ss_pred -CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714 93 -PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA 171 (205)
Q Consensus 93 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (205)
..+|++++|+|+++.++.. +|...+... ++|+++|+||+|+...+ .+. .+...+++.+++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~------------~i~-~~~~~l~~~lg~ 141 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKT------------GMK-IDRYELQKHLGI 141 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHT------------TCC-BCHHHHHHHHCS
T ss_pred hcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCcc------------chH-HHHHHHHHHcCC
Confidence 6899999999999876532 455556555 89999999999986543 232 236778888887
Q ss_pred ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 172 AEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
. ++++||++|.|++++|+++.+.+.
T Consensus 142 ~-vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 142 P-VVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp C-EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred C-EEEEEeeCCcCHHHHHHHHHHHhh
Confidence 6 999999999999999999998765
No 119
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=9.1e-26 Score=166.15 Aligned_cols=168 Identities=14% Similarity=0.026 Sum_probs=110.9
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEEC-CEEEEEEEEEcCCC----------cccc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVD-NKTYDVTLWDTAGQ----------EDYE 85 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~D~~g~----------~~~~ 85 (205)
......++|+|+|.+|+|||||++++.+.........+.+.... ....+. .....+.||||||. +.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 34456789999999999999999999998732222222222221 222333 33367999999994 3334
Q ss_pred cccccCcC---CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714 86 RLRPMSYP---NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG 162 (205)
Q Consensus 86 ~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (205)
.....++. .+|++++|+|+++..+... ..|+..+... ++|+++|+||+|+....... ...++.
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~----------~~~~~~ 169 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQESI----------NALRAT 169 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHHH----------HHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhHH----------HHHHHH
Confidence 44434443 4888999999988655333 2566777664 89999999999997643211 011222
Q ss_pred HHHHHH------cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 163 KKMRRK------IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 163 ~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
...... ....+++++||++|.|++++|++|.+.+...
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 170 QKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred HHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 222223 2445699999999999999999999887654
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=2.5e-25 Score=168.32 Aligned_cols=151 Identities=16% Similarity=0.141 Sum_probs=112.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccc------cccccCcC-
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYE------RLRPMSYP- 93 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 93 (205)
.++|+++|++|+|||||+++|.+... ...+. +..+ .....+.. ...+.+||+||+..+. .+.+.++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p---g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP---GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS---CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC---CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 57999999999999999999998763 33332 2222 23444554 5679999999998775 23344453
Q ss_pred -CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714 94 -NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172 (205)
Q Consensus 94 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (205)
.+|++++|+|+++.++. . .|...+... ++|+++|+||+|+.... .+. .+...+++.+++.
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~-~~~~~l~~~--~~p~ilv~NK~Dl~~~~------------~~~-~~~~~l~~~lg~~ 139 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---L-YLTTQLIET--GIPVTIALNMIDVLDGQ------------GKK-INVDKLSYHLGVP 139 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---H-HHHHHHHHT--CSCEEEEEECHHHHHHT------------TCC-CCHHHHHHHHTSC
T ss_pred CCCCEEEEEecCCchHhH---H-HHHHHHHhc--CCCEEEEEEChhhCCcC------------CcH-HHHHHHHHHcCCC
Confidence 69999999999886543 2 465556554 89999999999986543 222 3456777788876
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
++++||++|.|++++|+++.+.+.
T Consensus 140 -vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 140 -VVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp -EEECBTTTTBSHHHHHHHHHHSCT
T ss_pred -EEEEEccCCCCHHHHHHHHHHHHh
Confidence 999999999999999999988653
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=1.9e-25 Score=167.77 Aligned_cols=150 Identities=13% Similarity=0.154 Sum_probs=109.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-ccccccceeEEECCEEEEEEEEEcCCCccccc----------ccccCc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVP-TVFDNYPDTITVDNKTYDVTLWDTAGQEDYER----------LRPMSY 92 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 92 (205)
.+|+++|.+|+|||||++++.+..+.....+ ++.......+..++. .+.+||+||...+.. +.+.++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 3899999999999999999998864322222 222222345556664 799999999877654 344556
Q ss_pred --CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 93 --PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 93 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
..+|++++|+|+++.++... +...+... ++|+++|+||+|+...+ .+. .....+++.++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~----l~~~l~~~--~~pvilv~NK~Dl~~~~------------~~~-~~~~~l~~~lg 140 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLY----LTSQLFEL--GKPVVVALNMMDIAEHR------------GIS-IDTEKLESLLG 140 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHH----HHHHHTTS--CSCEEEEEECHHHHHHT------------TCE-ECHHHHHHHHC
T ss_pred hhCCCCEEEEEeeCCCchhHHH----HHHHHHHc--CCCEEEEEEChhcCCcC------------CcH-HHHHHHHHHcC
Confidence 88999999999998655443 33444444 89999999999987543 111 12445777778
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
.. ++++||++|.|++++|+++.+.
T Consensus 141 ~~-vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 CS-VIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SC-EEECBGGGTBSHHHHHHHHHTC
T ss_pred CC-EEEEECCCCCCHHHHHHHHHhh
Confidence 76 9999999999999999999875
No 122
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=2.5e-24 Score=165.06 Aligned_cols=158 Identities=19% Similarity=0.138 Sum_probs=111.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCCCcc--------ccccccc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED--------YERLRPM 90 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 90 (205)
.+..+|+++|.+|+|||||++++++.++.. ....|+..........++ .++.+|||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHH
Confidence 456789999999999999999999988742 222233222222233333 6799999999876 3344456
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
+++.+|++++|+|++++.+..+ ..++..+....+++|+++|+||+|+..... .+ .+.+..+ .+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-----------~~-~~~~~~~---~~ 145 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE-----------EA-MKAYHEL---LP 145 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-----------HH-HHHHHHT---ST
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH-----------HH-HHHHHHh---cC
Confidence 7899999999999998765543 234456665556899999999999976431 01 1222222 34
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
..+++++||++|.|++++|+++.+.+.
T Consensus 146 ~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 146 EAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp TSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred cCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 455899999999999999999987653
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=2.1e-24 Score=174.54 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=99.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccccc--------cc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR--------PM 90 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~ 90 (205)
...++|+++|.+|+|||||+++|.+... ...+.+++.+.....+.+++ +.+.+|||||...+.... ..
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 3568999999999999999999998753 34445555555566777777 569999999987765432 34
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
+++.+|++++|+|++++.++..+. .+...+... .++|+++|+||+|+..... .. .+.+.+. +
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~-~~~~~l~~l-~~~piIvV~NK~Dl~~~~~------------~~---~~~l~~~-~ 370 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELT-EIRELKAAH-PAAKFLTVANKLDRAANAD------------AL---IRAIADG-T 370 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHH-HHHHHHHHC-TTSEEEEEEECTTSCTTTH------------HH---HHHHHHH-H
T ss_pred hcccCCEEEEEEECCCCcchhhhH-HHHHHHHhc-CCCCEEEEEECcCCCCccc------------hh---HHHHHhc-C
Confidence 688999999999999988775432 233333322 2799999999999976541 11 1233333 2
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
..+++++||++|.|++++|+++.+.+.
T Consensus 371 ~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 371 GTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 245999999999999999999999886
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=1.5e-24 Score=164.42 Aligned_cols=157 Identities=22% Similarity=0.132 Sum_probs=114.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCccccc------ccccCc--
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYER------LRPMSY-- 92 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 92 (205)
+.++|+++|++|+|||||++++.+..+.....++..... ...+..++ ..+.+||+||...+.. ..+.++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999999999998876332233222222 33455566 4599999999887765 344444
Q ss_pred CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714 93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172 (205)
Q Consensus 93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (205)
..+|++++|+|+++.+. .. .|...+... ..+|+++|+||+|+.... .... ....+++.++..
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~-~~~~~~~~~-~~~p~ilv~NK~Dl~~~~------------~~~~-~~~~l~~~lg~~ 141 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NL-FLTLELFEM-EVKNIILVLNKFDLLKKK------------GAKI-DIKKMRKELGVP 141 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HH-HHHHHHHHT-TCCSEEEEEECHHHHHHH------------TCCC-CHHHHHHHHSSC
T ss_pred cCCcEEEEEecCCcchh---hH-HHHHHHHhc-CCCCEEEEEEChhcCccc------------ccHH-HHHHHHHHcCCc
Confidence 78999999999987532 22 344444444 139999999999987543 2222 266677788877
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
++++||++|.|++++|+++.+.+...
T Consensus 142 -~~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 142 -VIPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp -EEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred -EEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999887554
No 125
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=1.9e-24 Score=174.79 Aligned_cols=164 Identities=15% Similarity=0.163 Sum_probs=121.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCCcCccccccceeEEECCEEEEEEEEEcCC----------Ccccccc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENK--FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG----------QEDYERL 87 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 87 (205)
....+||+++|.+++|||||++++.+.. ....+.+++.+.....+..++. .+.|||||| ++.|...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 3467899999999999999999999765 2344555555555667777775 689999999 6666665
Q ss_pred cc-cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH
Q psy15714 88 RP-MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR 166 (205)
Q Consensus 88 ~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (205)
.. .+++.+|++++|+|+++..+.... .|...+... ++|+++|+||+|+...+ ....++..+.+
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~--~~~~~~~~~--~~~~ilv~NK~Dl~~~~------------~~~~~~~~~~~ 333 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKD------------ESTMKEFEENI 333 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCC------------SSHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEEChhcCCCc------------hHHHHHHHHHH
Confidence 44 367889999999999986554443 677777664 89999999999998654 44555555555
Q ss_pred HHc----CCceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 167 RKI----KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 167 ~~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
+.. +..+++++||++|.|++++|+++.+.+....+
T Consensus 334 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 334 RDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp HHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred HHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 444 34559999999999999999999988766543
No 126
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=3.2e-25 Score=168.23 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=110.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc-ccccceeEEECCEEEEEEEEEcCCCcccccc----------ccc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQEDYERL----------RPM 90 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~ 90 (205)
+.++|+++|.+|+|||||++++.+..+.....+.. .......+..++ ..+.+||+||...+... .+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 46899999999999999999999887532222222 222233444455 46888999998876632 122
Q ss_pred C--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714 91 S--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK 168 (205)
Q Consensus 91 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (205)
+ .+.+|++++|+|+++.++.. +|...+... ++|+++|+||+|+.... .+ ......+++.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~----~~~~~l~~~--~~p~ivv~NK~Dl~~~~------------~~-~~~~~~l~~~ 140 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQ------------NI-RIEIDALSAR 140 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHH----HHHHHHHHH--TCCEEEEEECHHHHHHT------------TE-EECHHHHHHH
T ss_pred HHhhcCCCEEEEEecCCChHHHH----HHHHHHHhc--CCCEEEEEECccchhhh------------hH-HHHHHHHHHh
Confidence 2 27899999999998865433 444555555 89999999999987543 11 1234567777
Q ss_pred cCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 169 IKAAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
+++. ++++||++|.|++++|+++.+.+.
T Consensus 141 lg~~-~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 141 LGCP-VIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp HTSC-EEECCCGGGHHHHHHHHHHHTCCC
T ss_pred cCCC-EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 7876 999999999999999999987654
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.5e-25 Score=164.48 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=99.6
Q ss_pred ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCC---CCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcC
Q psy15714 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPT---DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYP 93 (205)
Q Consensus 17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 93 (205)
.......++|+++|++|+|||||++++.+..+.. .+.++....+ ....+.+||+||++.++..+..++.
T Consensus 6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~ 77 (218)
T 1nrj_B 6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLK 77 (218)
T ss_dssp ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHH
T ss_pred CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHH
Confidence 3345667899999999999999999999988654 2333333222 3357999999999999888777777
Q ss_pred C----CcEEEEEEECC-CcchHHHHHHHHHHHHhhh-----CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH
Q psy15714 94 N----TDCFLLCFSIG-STSSYENILSKWYPELKHH-----CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK 163 (205)
Q Consensus 94 ~----~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (205)
. +|++++|||++ ++.++..+. .|+..+... ..++|+++|+||+|+.......... ....+++.
T Consensus 78 ~~~~~~~~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~------~~l~~~~~ 150 (218)
T 1nrj_B 78 TRAKFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTARPPSKIK------DALESEIQ 150 (218)
T ss_dssp HHGGGEEEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHH------HHHHHHHH
T ss_pred hccccCCEEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHH------HHHHHHHH
Confidence 6 89999999999 888888887 555554332 2589999999999998765321110 11133344
Q ss_pred HHHHHcCCceEEEcccCCCC
Q psy15714 164 KMRRKIKAAEYLECSAKLNE 183 (205)
Q Consensus 164 ~~~~~~~~~~~~~~Sa~~~~ 183 (205)
.++...+.. ++++||+++.
T Consensus 151 ~~~~~~~~~-~~~~Sa~~~~ 169 (218)
T 1nrj_B 151 KVIERRKKS-LNEVERKINE 169 (218)
T ss_dssp HHHHHHHHH-HHC-------
T ss_pred HHHHHHhcc-cccccccccc
Confidence 444444433 5666666554
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=1.6e-24 Score=174.32 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=116.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCC----------ccccccc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ----------EDYERLR 88 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~ 88 (205)
...+||+++|.+|+|||||++++.+... ...+..++.+.....+..++. .+.||||||+ +.|...+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 3568999999999999999999998875 344455555555566777775 4899999997 4444333
Q ss_pred c-cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH-HHHH
Q psy15714 89 P-MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG-KKMR 166 (205)
Q Consensus 89 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 166 (205)
. .+++.+|++++|+|++++.+.++. .|+..+... +.|+++|+||+|+...+ ....++. ..+.
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~~~ 314 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKD------------ESTMKEFEENIR 314 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCC------------TTHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcc------------hHHHHHHHHHHH
Confidence 2 367889999999999999888876 577777654 89999999999997654 2222222 2222
Q ss_pred HH---cCCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 167 RK---IKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 167 ~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
+. ....+++++||++|.|++++|+.+.+.+....
T Consensus 315 ~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 315 DHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp HHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred HhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 22 23345999999999999999999998876543
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=1.7e-24 Score=172.37 Aligned_cols=158 Identities=20% Similarity=0.216 Sum_probs=113.6
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccc-------
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRP------- 89 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~------- 89 (205)
.....++|+|+|..++|||||++++.+..+. ..+..++.......+...+.. .+.+|||||++.+..+..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 4556789999999999999999999988763 233333333334555555542 799999999988765533
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI 169 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (205)
.++..+|++++|+|++.. . ....|+..+... ++|+++|+||+|+.... .. +..+.+++.+
T Consensus 109 ~~l~~aD~vllVvD~~~~-~---~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~------------~~--~~~~~l~~~~ 168 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPT-P---YEDDVVNLFKEM--EIPFVVVVNKIDVLGEK------------AE--ELKGLYESRY 168 (423)
T ss_dssp HHHTSCSEEEEECSSSCC-H---HHHHHHHHHHHT--TCCEEEECCCCTTTTCC------------CT--HHHHHSSCCT
T ss_pred HHHhcCCEEEEEEeCCCh-H---HHHHHHHHHHhc--CCCEEEEEeCcCCCCcc------------HH--HHHHHHHHHc
Confidence 368889999999998332 2 223677778777 89999999999998754 21 5556666666
Q ss_pred CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 170 KAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
+.. ++++||++|.|++++|++|.+.+..
T Consensus 169 g~~-v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 169 EAK-VLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp TCC-CCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHHhhhh
Confidence 765 9999999999999999999988743
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=4.9e-23 Score=165.82 Aligned_cols=154 Identities=23% Similarity=0.189 Sum_probs=105.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcc---------cccccccCc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED---------YERLRPMSY 92 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 92 (205)
.+|+++|.+++|||||+|+|.+.+. ...+..++.+.....+..++. .+.+|||||.+. ++.....++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 3799999999999999999998764 344444444454556677775 578999999764 233445678
Q ss_pred CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH-HHHHHHcCC
Q psy15714 93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG-KKMRRKIKA 171 (205)
Q Consensus 93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 171 (205)
+.+|++++|+|+.+..+..+. .+...++.. ++|+++|+||+|+.... ..+. .++. .++.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~~---------------~~~~~~~~~-~lg~ 139 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLREF---------------EREVKPELY-SLGF 139 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHHH---------------HHHTHHHHG-GGSS
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCcccc---------------HHHHHHHHH-hcCC
Confidence 999999999999887655442 233344444 89999999999975320 1112 2333 4566
Q ss_pred ceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 172 AEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
.+++++||++|.|++++|+++.+.+...
T Consensus 140 ~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 140 GEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp CSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 4489999999999999999999988643
No 131
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.4e-22 Score=159.15 Aligned_cols=161 Identities=18% Similarity=0.147 Sum_probs=115.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEECCEEEEEEEEEcCCCccccc---------cccc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER---------LRPM 90 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~ 90 (205)
...++|+++|.+|+|||||++++.+..+.. .+..++.......+..++ ..+.+||+||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999876422 111221111112223333 5699999999754321 1113
Q ss_pred CcCCCcEEEEEEECCCcc--hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714 91 SYPNTDCFLLCFSIGSTS--SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK 168 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (205)
+...+|++++|+|+++.. ++.... .|+..+.....+.|+++|+||+|+.... . .+++..+++.
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~-~~~~~i~~~~~~~piilV~NK~Dl~~~~------------~--~~~~~~~~~~ 307 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQI-HLFEEVHGEFKDLPFLVVINKIDVADEE------------N--IKRLEKFVKE 307 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHH-HHHHHHHHHTTTSCEEEEECCTTTCCHH------------H--HHHHHHHHHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHH-HHHHHHHHhcCCCCEEEEEECcccCChH------------H--HHHHHHHHHh
Confidence 445799999999999876 677765 7888887765589999999999987643 1 2345556666
Q ss_pred cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 169 IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
.+.. ++++||++|+|++++|+++.+.+...
T Consensus 308 ~~~~-~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 308 KGLN-PIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TTCC-CEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred cCCC-eEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 6665 99999999999999999999887654
No 132
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=2.2e-23 Score=168.69 Aligned_cols=151 Identities=22% Similarity=0.235 Sum_probs=114.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCCCCcCccccccceeEEECCEEEEEEEEEcCCCc-ccccc--------cccC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENK--FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE-DYERL--------RPMS 91 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~~--------~~~~ 91 (205)
.++|+++|.+|+|||||++++.+.. +...+..|+.+.....+.+++ ..+.+|||||.. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4899999999999999999999875 345556666666667777887 468999999987 55432 2245
Q ss_pred cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714 92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA 171 (205)
Q Consensus 92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (205)
++.+|++++|+|++++.++++. .++..+ .+.|+++|+||+|+... +..++...+.. .+.
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~--------------~~~~~~~~~~~-~~~ 379 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK--------------INEEEIKNKLG-TDR 379 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC--------------CCHHHHHHHHT-CST
T ss_pred hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc--------------cCHHHHHHHhc-CCC
Confidence 7889999999999998887664 333333 37899999999999652 22233433332 223
Q ss_pred ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 172 AEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
. ++++||++|+|++++|++|.+.+.
T Consensus 380 ~-~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 380 H-MVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp T-EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred c-EEEEECCCCCCHHHHHHHHHHHHh
Confidence 4 999999999999999999998765
No 133
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=7.3e-23 Score=159.66 Aligned_cols=134 Identities=10% Similarity=0.087 Sum_probs=96.7
Q ss_pred EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECC----------CcchHHHHHHHHHHHHhhh--CCCCCEEEEeeC
Q psy15714 69 KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIG----------STSSYENILSKWYPELKHH--CPKVPIILVGTK 136 (205)
Q Consensus 69 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK 136 (205)
..+.+++||++|++.++.++..++++++++|||||++ +..++++.. .|+..+... ..++|+++|+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~-~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHH-HHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHH-HHHHHHHhccccCCCeEEEEEEC
Confidence 5689999999999999999999999999999999998 788999987 566655442 368999999999
Q ss_pred cccccCchhh-hhhh---hhcc-----ccccHHHHHHHHHH---------------cCCceEEEcccCCCCCHHHHHHHH
Q psy15714 137 ADLRSENKTI-DKKK---AAEV-----DLVSTSQGKKMRRK---------------IKAAEYLECSAKLNEGLDQVFIAA 192 (205)
Q Consensus 137 ~Dl~~~~~~~-~~~~---~~~~-----~~~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~i~~~~~~i 192 (205)
+|+....... .... .... ...+.+++..++.. .....+++|||+++.||+++|.++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 9986532110 0000 0000 01235666666433 123336899999999999999999
Q ss_pred HHHHHhhcccC
Q psy15714 193 VRSAVKKQDKS 203 (205)
Q Consensus 193 ~~~~~~~~~~~ 203 (205)
.+.+....-+.
T Consensus 340 ~~~I~~~~l~~ 350 (354)
T 2xtz_A 340 DETLRRRNLLE 350 (354)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99988765543
No 134
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.89 E-value=1.3e-22 Score=158.33 Aligned_cols=133 Identities=15% Similarity=0.180 Sum_probs=98.8
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCC----------cchHHHHHHHHHHHHhhh--CCCCCEEEEeeCc
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGS----------TSSYENILSKWYPELKHH--CPKVPIILVGTKA 137 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 137 (205)
.+.+.+||++|++.++..|..++++++++|||||+++ ..++.+.. .|+..+... ..++|+++++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~-~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM-KLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHH-HHHHHHHcCccccCCcEEEEEECc
Confidence 3779999999999999999999999999999999999 56788887 566655442 2689999999999
Q ss_pred ccccCchhh-hhhhh-hc-cccccHHHHHHHHHH----------cCCceEEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714 138 DLRSENKTI-DKKKA-AE-VDLVSTSQGKKMRRK----------IKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKS 203 (205)
Q Consensus 138 Dl~~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 203 (205)
|+....... ..... .. ...++.+++..++.. ....++++|||+++.||+++|.++.+.+....-+.
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l~~ 349 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 349 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC---
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHHHH
Confidence 986432110 00000 00 013567888888763 23345899999999999999999999998765543
No 135
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=2e-22 Score=163.61 Aligned_cols=162 Identities=21% Similarity=0.191 Sum_probs=112.6
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC----C---CCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccC
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENK----F---PTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMS 91 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~----~---~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 91 (205)
.++.++|+++|..++|||||++++.+.. + .....+.+.... ...+..++ ..+.+||+||++.|.......
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 3678999999999999999999999776 1 111111111111 12344455 679999999999998888888
Q ss_pred cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc-C
Q psy15714 92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI-K 170 (205)
Q Consensus 92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 170 (205)
+..+|++++|+|+++...-+.. +++..+... ++|+++|+||+|+.+.... ....++...+.+.. +
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~ip~IvviNK~Dl~~~~~~----------~~~~~~l~~~l~~~~~ 159 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEEI----------KRTEMIMKSILQSTHN 159 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHHH----------HHHHHHHHHHHHHSSS
T ss_pred HhhCCEEEEEEecCCCccHHHH--HHHHHHHHc--CCCEEEEEECCCcccchhH----------HHHHHHHHHHHhhhcc
Confidence 9999999999999884322222 233344444 7999999999999753211 22234555555544 2
Q ss_pred --CceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 171 --AAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 171 --~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
..+++++||++|+|+++++++|.+.+.
T Consensus 160 ~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 160 LKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 234999999999999999999998774
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=1.8e-22 Score=160.85 Aligned_cols=167 Identities=16% Similarity=0.097 Sum_probs=114.6
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC--cC-cccc----ccceeEE------------ECCEEEEEEEEEcCC
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDY--VP-TVFD----NYPDTIT------------VDNKTYDVTLWDTAG 80 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~--~~-t~~~----~~~~~~~------------~~~~~~~~~i~D~~g 80 (205)
....++|+++|.+++|||||++++.+....... .. +.+. .....+. .......+.+||+||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 456799999999999999999999975432210 00 0000 0000000 012336899999999
Q ss_pred CcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHH
Q psy15714 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (205)
++.|.......+..+|++++|+|+++..+..... +|+..+.... ..|+++|+||+|+.+.... ....+
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~-~~~~~~~~~~-~~~iivviNK~Dl~~~~~~----------~~~~~ 152 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHFVALGIIG-VKNLIIVQNKVDVVSKEEA----------LSQYR 152 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHH-HHHHHHHHHT-CCCEEEEEECGGGSCHHHH----------HHHHH
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHH-HHHHHHHHcC-CCCEEEEEECccccchHHH----------HHHHH
Confidence 9999998888899999999999999886555555 5666665552 3589999999999764321 11122
Q ss_pred HHHHHHHHcC--CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 161 QGKKMRRKIK--AAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 161 ~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
+...+.+..+ ..+++++||++|+|++++|++|.+.+..
T Consensus 153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 3333333322 3359999999999999999999886643
No 137
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.88 E-value=4.9e-24 Score=173.87 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=113.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEE-CCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITV-DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
+..+|+++|++++|||||+++|.+..+.....+++.... ...+.. ++ ..+++|||||++.|...+..++..+|+++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 567899999999999999999997765443344333322 222222 23 36899999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH---HHHc-CCceEE
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM---RRKI-KAAEYL 175 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~ 175 (205)
+|+|+++....+.. +++..+... ++|+++++||+|+...+.. .+ .++...+ +..+ +..+++
T Consensus 81 LVVDa~dg~~~qt~--e~l~~~~~~--~vPiIVViNKiDl~~~~~~----------~v-~~~l~~~~~~~e~~~~~~~iv 145 (537)
T 3izy_P 81 LVVAADDGVMKQTV--ESIQHAKDA--HVPIVLAINKCDKAEADPE----------KV-KKELLAYDVVCEDYGGDVQAV 145 (537)
T ss_dssp EECBSSSCCCHHHH--HHHHHHHTT--TCCEEECCBSGGGTTTSCC----------SS-SSHHHHTTSCCCCSSSSEEEC
T ss_pred EEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEecccccccchH----------HH-HHHHHhhhhhHHhcCCCceEE
Confidence 99999997766554 344444444 8999999999999754321 11 1111111 1111 124599
Q ss_pred EcccCCCCCHHHHHHHHHHHHH
Q psy15714 176 ECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 176 ~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
++||++|+|++++|+++...+.
T Consensus 146 ~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 146 HVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCCSSSSCSSHHHHHHHHHHHT
T ss_pred EEECCCCCCchhHHHHHHHhhh
Confidence 9999999999999999988764
No 138
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.88 E-value=2.1e-22 Score=155.05 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=97.3
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECC----------CcchHHHHHHHHHHHHhh-hC-CCCCEEEEeeCcc
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIG----------STSSYENILSKWYPELKH-HC-PKVPIILVGTKAD 138 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~-~~~p~ivv~nK~D 138 (205)
+++++||++|++.++..|..++++++++|||||++ +..++.+.. .|+..+.. .. .++|+++++||+|
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~-~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK-ALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH-HHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH-HHHHHHhhhhccCCceEEEEEECch
Confidence 78999999999999999999999999999999654 667888877 45444433 22 6899999999999
Q ss_pred cccCchh----hhhhhhhccccccHHHHHHHHH----------HcCCceEEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714 139 LRSENKT----IDKKKAAEVDLVSTSQGKKMRR----------KIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKS 203 (205)
Q Consensus 139 l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 203 (205)
+...+.. ..-.........+.+++..+.. ..++ .+++|||+++.||+.+|..+.+.+++..-+.
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~~ 323 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQLNLKE 323 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHHTTCC-
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHHHhHHh
Confidence 8754311 1111111122457778877742 3333 4889999999999999999999998876544
No 139
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=3.4e-22 Score=153.44 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=109.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCc-c--------cccccc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE-D--------YERLRP 89 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~~~ 89 (205)
.+..+|+++|++|+|||||++++.+.++. .....++.......+..++ .++.+|||||.. . +.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 45568999999999999999999988753 2222222221112233333 578999999987 2 334456
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI 169 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (205)
..++.+|++++|+|+++ -+ .....+...+.. .+.|+++++||+|+.... ....+....+.+.+
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~------------~~~~~~l~~l~~~~ 146 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE--GKAPVILAVNKVDNVQEK------------ADLLPHLQFLASQM 146 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS--SSSCEEEEEESTTTCCCH------------HHHHHHHHHHHTTS
T ss_pred HHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh--cCCCEEEEEECcccCccH------------HHHHHHHHHHHHhc
Confidence 67899999999999977 33 222123333433 379999999999987622 22234455666666
Q ss_pred CCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 170 KAAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
+...++++||+++.|++++++.+.+.+
T Consensus 147 ~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 147 NFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp CCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred CcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 765689999999999999999988654
No 140
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=2e-22 Score=151.83 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=108.0
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCC-CCCCCcCc--cccccceeEEECCEEEEEEEEEcCCCccccccc-------
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENK-FPTDYVPT--VFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR------- 88 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~-~~~~~~~t--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------- 88 (205)
.....++|+|+|.+|+|||||++++.+.. +...+.++ +.......+..++ ..+.||||||...+....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 34567999999999999999999999877 44333333 2222233445556 569999999986653221
Q ss_pred ----ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEee-CcccccCchhhhhhhhhccccccHH
Q psy15714 89 ----PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGT-KADLRSENKTIDKKKAAEVDLVSTS 160 (205)
Q Consensus 89 ----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~n-K~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (205)
...++.+|++|+|+|+++...... .+...+.... ...|.++|+| |+|+.......... .....
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~---~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~------~~~~~ 166 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQ---QAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMH------DSDNK 166 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHH---HHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHH------HCCCH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHH---HHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHH------hcchH
Confidence 125789999999999986332222 2333333322 1456766666 99997532110000 11124
Q ss_pred HHHHHHHHcCCce--E--EEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 161 QGKKMRRKIKAAE--Y--LECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 161 ~~~~~~~~~~~~~--~--~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+++.+.+..+... + +++||+++.|++++|++|.+.+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 167 ALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 4555666665431 2 7899999999999999999987654
No 141
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=6.2e-23 Score=159.54 Aligned_cols=159 Identities=20% Similarity=0.234 Sum_probs=115.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcc----cccccccCcC---CCc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----YERLRPMSYP---NTD 96 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~---~~~ 96 (205)
+|+++|.++||||||++++.+.+.. ..+..++.......+.+++. ..+.+||+||... ++.+...+++ .++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 5889999999999999999987642 22332332222223444431 4689999999543 3334344444 499
Q ss_pred EEEEEEECCC---cchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 97 CFLLCFSIGS---TSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 97 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
++|+|+|+++ +.+++++. .|+..+..+. .++|+++|+||+|+.... +....+++.+.
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----------------e~~~~l~~~l~ 301 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEAA----------------ENLEAFKEKLT 301 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----------------HHHHHHHHHCC
T ss_pred EEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCCH----------------HHHHHHHHHhh
Confidence 9999999998 78888876 7888888765 489999999999986532 23455555555
Q ss_pred C-ceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714 171 A-AEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201 (205)
Q Consensus 171 ~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 201 (205)
. .+++++||++++|++++|.+|.+.+....+
T Consensus 302 ~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 302 DDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp SCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred cCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 2 348999999999999999999998865443
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=1.8e-22 Score=162.65 Aligned_cols=154 Identities=23% Similarity=0.259 Sum_probs=105.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccccc--------cc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR--------PM 90 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~ 90 (205)
...++|+++|.+|+|||||+++|.+..+ ......++.+.....+.+++ ..+.+|||||...+.... ..
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence 3568999999999999999999998643 34444444444456777888 468999999976654332 23
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
.+..+|++++|+|++++.+.... .|+..+. +.|+++|+||+|+....... ....+. .
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~~~~~--------------~~~~~~---~ 356 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEKQLIT--------------SLEYPE---N 356 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCGGGST--------------TCCCCT---T
T ss_pred hhhcCCEEEEEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcchhhH--------------HHHHhc---c
Confidence 67889999999999998776552 5665553 47999999999997654211 000011 2
Q ss_pred CceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
..+++++||++|+|++++|++|.+.+...
T Consensus 357 ~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 357 ITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp CCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 33499999999999999999999987654
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=2e-21 Score=156.49 Aligned_cols=161 Identities=19% Similarity=0.160 Sum_probs=108.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccccc----------
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR---------- 88 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------- 88 (205)
...+||+++|++|+|||||++++.+... ...+..++.+.....+.+++. .+.+||++|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 3468999999999999999999998764 344444444444566778885 57899999975433221
Q ss_pred --ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH-HH
Q psy15714 89 --PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK-KM 165 (205)
Q Consensus 89 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~ 165 (205)
...++.+|++++|+|+++..+..+. .+...+... +.|+++|+||+|+...+ ..+.++.. .+
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~~--~~~~ilv~NK~Dl~~~~------------~~~~~~~~~~~ 319 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHR------------EKRYDEFTKLF 319 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTG------------GGCHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCCch------------hhHHHHHHHHH
Confidence 1235668999999999987776653 344545444 89999999999997643 22222221 22
Q ss_pred HHH---cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 166 RRK---IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 166 ~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
.+. ....+++++||++|.|++++|+.+.+.+...
T Consensus 320 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 320 REKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp HHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 222 2334599999999999999999998876553
No 144
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=2.2e-21 Score=144.34 Aligned_cols=168 Identities=15% Similarity=0.106 Sum_probs=106.7
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCc---cccccceeEEECCEEEEEEEEEcCCCc-----------cc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPT---VFDNYPDTITVDNKTYDVTLWDTAGQE-----------DY 84 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~ 84 (205)
.....+||+++|.+|+|||||++++++..+.....+. +.......+..++ ..+.||||||.. .+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 4457899999999999999999999998875444332 1222233455666 468999999943 34
Q ss_pred ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ 161 (205)
Q Consensus 85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (205)
.......++.+|++++|+|+++...... .|+..+.... ...|+++|+||+|+.......... ....+.
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~---~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i------~~~~~~ 173 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEH---KATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYL------REAPED 173 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHH---HHHHHHHHHHHHHHGGGEEEEEECGGGC------------------CHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHH---HHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHH------HhchHH
Confidence 4444456788999999999876544221 3333333211 246999999999987653211100 011346
Q ss_pred HHHHHHHcCCceEEEcccCCC-----CCHHHHHHHHHHHHHh
Q psy15714 162 GKKMRRKIKAAEYLECSAKLN-----EGLDQVFIAAVRSAVK 198 (205)
Q Consensus 162 ~~~~~~~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~~ 198 (205)
.+.+.+..+.. ++.+++..+ .++.++|..+.+.+..
T Consensus 174 l~~l~~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 174 IQDLMDIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHHHHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 77888888877 777766643 6899999988777654
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=2e-21 Score=155.08 Aligned_cols=165 Identities=18% Similarity=0.109 Sum_probs=103.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC---CCCCCcC--ccccccc-eeEEE-------------C--C----EEEEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENK---FPTDYVP--TVFDNYP-DTITV-------------D--N----KTYDVTL 75 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~---~~~~~~~--t~~~~~~-~~~~~-------------~--~----~~~~~~i 75 (205)
...++|+++|+.++|||||++++.+.. +.....+ |+...+. ..+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 456999999999999999999998543 2222222 2222221 11100 1 1 2378999
Q ss_pred EEcCCCcccccccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhcc
Q psy15714 76 WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEV 154 (205)
Q Consensus 76 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 154 (205)
||+||++.|...+...+..+|++++|+|+++.. .-+.. +.+..+... ...|+++++||+|+......
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~--e~l~~~~~l-~~~~iivv~NK~Dl~~~~~~--------- 153 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTK--EHLMALEIL-GIDKIIIVQNKIDLVDEKQA--------- 153 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHH--HHHHHHHHT-TCCCEEEEEECTTSSCTTTT---------
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhH--HHHHHHHHc-CCCeEEEEEEccCCCCHHHH---------
Confidence 999999999888777888999999999999643 11111 222233322 23589999999999765311
Q ss_pred ccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 155 DLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 155 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
....++.+.+++.. ...+++++||++|+|+++++++|.+.+..
T Consensus 154 -~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 154 -EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp -TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 12344556666543 23459999999999999999999886543
No 146
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.87 E-value=1.3e-21 Score=154.24 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=96.2
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCC----------cchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcc
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGS----------TSSYENILSKWYPELKHH--CPKVPIILVGTKAD 138 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D 138 (205)
+.++|||++|++.++..|..++++++++|||||+++ ..++.++. .|+..+... ..++|++||+||+|
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~-~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL-NLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHH-HHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHH-HHHHHHHhcccCCCCeEEEEEEChh
Confidence 679999999999999999999999999999999999 88999987 677766553 37899999999999
Q ss_pred cccCchh--h-hhhhhh-cc--------------ccccHHHHHHHH-----HHc-------CCceEEEcccCCCCCHHHH
Q psy15714 139 LRSENKT--I-DKKKAA-EV--------------DLVSTSQGKKMR-----RKI-------KAAEYLECSAKLNEGLDQV 188 (205)
Q Consensus 139 l~~~~~~--~-~~~~~~-~~--------------~~~~~~~~~~~~-----~~~-------~~~~~~~~Sa~~~~~i~~~ 188 (205)
+...... . ...... .. ...+.+++..++ +.. ....+++|||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 9654321 0 110000 00 001245565553 221 2334789999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy15714 189 FIAAVRSAVKKQD 201 (205)
Q Consensus 189 ~~~i~~~~~~~~~ 201 (205)
|.++.+.++...-
T Consensus 376 F~~v~~~I~~~~l 388 (402)
T 1azs_C 376 FNDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876543
No 147
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.86 E-value=1.8e-21 Score=150.39 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=94.1
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECC----------CcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcc
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIG----------STSSYENILSKWYPELKHHC-PKVPIILVGTKAD 138 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 138 (205)
.+++++||++|++.++..|..++++++++|||||++ +..++.+....|...+.... .++|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 477999999999999999999999999999999998 77888888744444444333 6899999999999
Q ss_pred cccCchhhhh-hhh-hc-cccccHHHHHHHHHH-c-------------------------CCceEEEcccCCCCCHHHHH
Q psy15714 139 LRSENKTIDK-KKA-AE-VDLVSTSQGKKMRRK-I-------------------------KAAEYLECSAKLNEGLDQVF 189 (205)
Q Consensus 139 l~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~~-~-------------------------~~~~~~~~Sa~~~~~i~~~~ 189 (205)
+......... ... .. ....+.+++..+... . ....+++|||++..||+.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 9754321111 000 00 001245565444332 2 12448999999999999999
Q ss_pred HHHHHHHHh
Q psy15714 190 IAAVRSAVK 198 (205)
Q Consensus 190 ~~i~~~~~~ 198 (205)
..+.+.++.
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999887
No 148
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=1.9e-22 Score=162.30 Aligned_cols=152 Identities=18% Similarity=0.168 Sum_probs=99.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCc--------ccccccccCcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE--------DYERLRPMSYP 93 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~ 93 (205)
.+|+++|.+|+|||||++++.+..+. ..+..++.+.....+..++ ..+.+|||||.+ .++.....+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999987653 2222222222112222233 569999999985 45666667889
Q ss_pred CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714 94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE 173 (205)
Q Consensus 94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (205)
.+|++++|+|+.+..+..+. .+...+++. ++|+++|+||+|+..... .. .++. .++...
T Consensus 82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~~--~~pvilv~NK~D~~~~~~-----------~~-----~~~~-~lg~~~ 140 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEMRA-----------NI-----YDFY-SLGFGE 140 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH--HHHHHHTTC--CSCEEEEEECCCC----------------CC-----CSSG-GGSSCC
T ss_pred hCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCccchh-----------hH-----HHHH-HcCCCC
Confidence 99999999999988776552 455555543 899999999999875421 00 0111 234435
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 174 YLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 174 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
++++||++|.|++++|+++.+.+.+
T Consensus 141 ~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 141 PYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp CEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred eEEEeCcCCCChHHHHHHHHHhcCc
Confidence 8999999999999999999988753
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.86 E-value=5.6e-21 Score=152.62 Aligned_cols=166 Identities=18% Similarity=0.114 Sum_probs=109.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCC---CCCCcC--ccccccce-eEEE-------------C--C----EEEEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKF---PTDYVP--TVFDNYPD-TITV-------------D--N----KTYDVT 74 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~---~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~~~ 74 (205)
....++|+++|+.++|||||+++|.+... .....+ |+...+.. .... + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 45679999999999999999999985432 222222 22221111 1100 1 1 136899
Q ss_pred EEEcCCCcccccccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhc
Q psy15714 75 LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAE 153 (205)
Q Consensus 75 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 153 (205)
+||+||++.|.......+..+|++|+|+|+++.. ..+. . +.+..+... ...|+++++||+|+......
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt-~-e~l~~~~~~-~~~~iivviNK~Dl~~~~~~-------- 155 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT-R-EHLMALQII-GQKNIIIAQNKIELVDKEKA-------- 155 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHH-H-HHHHHHHHH-TCCCEEEEEECGGGSCHHHH--------
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhH-H-HHHHHHHHc-CCCcEEEEEECccCCCHHHH--------
Confidence 9999999999887777788999999999999653 1112 1 222233333 23589999999999764311
Q ss_pred cccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 154 VDLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 154 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
....++.+.+.+.. ...+++++||++|+|+++++++|.+.+..
T Consensus 156 --~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 156 --LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp --HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred --HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 11233445555432 23459999999999999999999876543
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=6.8e-21 Score=153.12 Aligned_cols=163 Identities=13% Similarity=0.065 Sum_probs=105.1
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCC------------------------cCc---ccccc-ceeEEECC
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENK--FPTDY------------------------VPT---VFDNY-PDTITVDN 68 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~------------------------~~t---~~~~~-~~~~~~~~ 68 (205)
.....++|+++|.+++|||||+++|+... +.... .+. .+... .....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 44677999999999999999999995431 11110 000 00111 01111222
Q ss_pred EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcch---HH---HHHHHHHHHHhhhCCCCC-EEEEeeCccccc
Q psy15714 69 KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSS---YE---NILSKWYPELKHHCPKVP-IILVGTKADLRS 141 (205)
Q Consensus 69 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 141 (205)
....+.|||+||+++|.......+..+|++++|+|+++... +. ... +.+..+... ++| +++++||+|+..
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~-e~l~~~~~~--~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTR-EHAMLAKTA--GVKHLIVLINKMDDPT 169 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHH-HHHHHHHHc--CCCeEEEEeecCCCcc
Confidence 33589999999999999888889999999999999988642 11 111 233333333 677 999999999964
Q ss_pred CchhhhhhhhhccccccHHHHHHHHHHcCC-----ceEEEcccCCCCCHHHHHH
Q psy15714 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKA-----AEYLECSAKLNEGLDQVFI 190 (205)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 190 (205)
........ ....++...+.+..+. .+++++||++|+|++++++
T Consensus 170 ~~~~~~~~------~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERY------EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHH------HHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 32111100 1223445556666553 3599999999999999654
No 151
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.86 E-value=2.2e-20 Score=146.52 Aligned_cols=162 Identities=17% Similarity=0.134 Sum_probs=109.9
Q ss_pred eE-EEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEECCEEEEEEEEEcCCCc---------ccccccccCc
Q psy15714 24 LK-VTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE---------DYERLRPMSY 92 (205)
Q Consensus 24 ~k-i~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~ 92 (205)
++ |+++|.+|+|||||++++.+..+.. ....++.+.....+.+++ ..+.+||++|.. .++..+. .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 44 9999999999999999999877532 223333334456677888 468999999962 2333333 47
Q ss_pred CCCcEEEEEEECCCcc--hHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714 93 PNTDCFLLCFSIGSTS--SYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI 169 (205)
Q Consensus 93 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (205)
..+|++++|+|++++. ...... .|...+.... .+.|+++|+||+|+.+... ....+.+..++..+
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~-----------~~~~~~~~~l~~~l 323 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGDL-----------YKKLDLVEKLSKEL 323 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSCH-----------HHHHHHHHHHHHHH
T ss_pred HhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCchH-----------HHHHHHHHHHHHHh
Confidence 8899999999999876 444443 5666666654 6899999999999875421 00112333344444
Q ss_pred -C-CceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 170 -K-AAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 170 -~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
. ..+++++||+++.|+++++++|.+.+....
T Consensus 324 ~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 324 YSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp CSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred cCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 2 234899999999999999999998776543
No 152
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=4.4e-21 Score=158.41 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=111.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC-----CcCc------ccccc---ceeEEE---CCEEEEEEEEEcCCC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTD-----YVPT------VFDNY---PDTITV---DNKTYDVTLWDTAGQ 81 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~-----~~~t------~~~~~---~~~~~~---~~~~~~~~i~D~~g~ 81 (205)
.+..+|+++|+.++|||||+++++.. .+... ...+ .+... ...+.+ ++..+.++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 34679999999999999999999752 22111 0000 01111 111212 456789999999999
Q ss_pred cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ 161 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (205)
.+|.......+..+|++|+|+|+++..+.+... .|..... . ++|+++|+||+|+...+. ...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~-~~~~a~~-~--~ipiIvviNKiDl~~a~~--------------~~v 145 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVA-NFWKAVE-Q--DLVIIPVINKIDLPSADV--------------DRV 145 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHH-HHHHHHH-T--TCEEEEEEECTTSTTCCH--------------HHH
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH-C--CCCEEEEEeccCccccCH--------------HHH
Confidence 999888778899999999999999998887765 5654443 3 899999999999976431 122
Q ss_pred HHHHHHHcCCc--eEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 162 GKKMRRKIKAA--EYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 162 ~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
..++...++.. .++++||++|.|++++|+++++.+..
T Consensus 146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 34444444442 38999999999999999999987654
No 153
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=2.3e-21 Score=160.35 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=108.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC--CCCCC-----CcCc------ccccc-ceeEEE-----CCEEEEEEEEEcCCCc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTEN--KFPTD-----YVPT------VFDNY-PDTITV-----DNKTYDVTLWDTAGQE 82 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~--~~~~~-----~~~t------~~~~~-~~~~~~-----~~~~~~~~i~D~~g~~ 82 (205)
+..+|+++|+.++|||||+++++.. .+... +..+ .+... .....+ ++..+.++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 3468999999999999999999862 22110 1110 11111 111222 5567899999999999
Q ss_pred ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG 162 (205)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (205)
+|.......+..+|++|+|+|+++..+.+... .|..... . ++|+++|+||+|+...+. .+..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~-~~~~~~~-~--~ipiIvViNKiDl~~a~~--------------~~v~ 144 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLA-NCYTAME-M--DLEVVPVLNKIDLPAADP--------------ERVA 144 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHH-HHHHHHH-T--TCEEEEEEECTTSTTCCH--------------HHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH-C--CCCEEEeeeccCcccccH--------------HHHH
Confidence 99888888899999999999999987777765 5655443 3 799999999999976431 2223
Q ss_pred HHHHHHcCCc--eEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 163 KKMRRKIKAA--EYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 163 ~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
.++...++.. .++++||++|.|++++|+++.+.+..
T Consensus 145 ~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 145 EEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 4445555442 38999999999999999999887654
No 154
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=3.2e-21 Score=153.84 Aligned_cols=164 Identities=15% Similarity=0.085 Sum_probs=113.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--------CCCCC--CcC-----cccccc-ceeEEECCEEEEEEEEEcCCCcc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTEN--------KFPTD--YVP-----TVFDNY-PDTITVDNKTYDVTLWDTAGQED 83 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~--------~~~~~--~~~-----t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 83 (205)
....++|+++|++++|||||+++|.+. .+... .+. +.+... .....+......+.|||+||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999873 22110 000 111111 12233333446799999999999
Q ss_pred cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQG 162 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (205)
|.......+..+|++|+|+|+++....+. . +|+..+... ++| +++++||+|+....... ....++.
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~-~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~---------~~~~~~~ 154 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT-R-EHILLARQV--GVPYIVVFMNKVDMVDDPELL---------DLVEMEV 154 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH-H-HHHHHHHHT--TCCCEEEEEECGGGCCCHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH-H-HHHHHHHHc--CCCEEEEEEECccccCcHHHH---------HHHHHHH
Confidence 98888888999999999999998765444 2 566666655 788 89999999997522100 1123456
Q ss_pred HHHHHHcCC----ceEEEcccCCCCC------------------HHHHHHHHHHHH
Q psy15714 163 KKMRRKIKA----AEYLECSAKLNEG------------------LDQVFIAAVRSA 196 (205)
Q Consensus 163 ~~~~~~~~~----~~~~~~Sa~~~~~------------------i~~~~~~i~~~~ 196 (205)
+.+++..+. .+++++||++|+| ++++++.+.+.+
T Consensus 155 ~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 155 RDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp HHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 667777663 5699999999987 777777776654
No 155
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=1.3e-20 Score=140.71 Aligned_cols=168 Identities=11% Similarity=0.040 Sum_probs=105.1
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCc---cccccceeEEECCEEEEEEEEEcCCCcc--------cccc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPT---VFDNYPDTITVDNKTYDVTLWDTAGQED--------YERL 87 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~ 87 (205)
.....+||+++|.+|+|||||++++++..+.....+. +..........++ ..+.||||||... +...
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHH
Confidence 3456899999999999999999999988765432222 2222223445555 5689999999632 2221
Q ss_pred cccC----cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC----CCCCEEEEeeCcccccCchhhhhhhhhccccccH
Q psy15714 88 RPMS----YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVST 159 (205)
Q Consensus 88 ~~~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (205)
.... .+.+|++++|+|+++....+. .++..+.... .+.|+++++||.|+.......... ....
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~---~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~------~~~~ 165 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGRFTAQDQ---QAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVS------NTEN 165 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTBCCHHHH---HHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHH------HCCC
T ss_pred HHHHHHhcCCCCCEEEEEEeCCCCCHHHH---HHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHh------hccc
Confidence 1122 389999999999985322221 3333343322 378999999999996542110000 1112
Q ss_pred HHHHHHHHHcCCceEEEcccCC-----CCCHHHHHHHHHHHHHh
Q psy15714 160 SQGKKMRRKIKAAEYLECSAKL-----NEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~Sa~~-----~~~i~~~~~~i~~~~~~ 198 (205)
+..+.+.+..+.. ++.+++.. +.|++++++.|.+.+..
T Consensus 166 ~~l~~l~~~~g~~-~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 166 RALRELVAECGGR-VCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHHHHHHHTTTC-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCe-EEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 4567777787776 65555544 58999999999887764
No 156
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=1.1e-20 Score=156.41 Aligned_cols=170 Identities=16% Similarity=0.138 Sum_probs=107.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC----CcCccccccce-------------eEEECCEEEEEEEEEcCCCcc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTD----YVPTVFDNYPD-------------TITVDNKTYDVTLWDTAGQED 83 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~----~~~t~~~~~~~-------------~~~~~~~~~~~~i~D~~g~~~ 83 (205)
.+..+|+++|++++|||||++++.+..+... ..++.+..+.. ...++.....+++|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4568999999999999999999987654322 12222211110 000001112599999999999
Q ss_pred cccccccCcCCCcEEEEEEECCC---cchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhh---hhhhhhccc--
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGS---TSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTI---DKKKAAEVD-- 155 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~-- 155 (205)
|...+...++.+|++|+|+|+++ +.+++.+ ..+... ++|+++++||+|+....... ...+.....
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-----~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-----HHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-----HHHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999989999999999999998 4444433 233343 89999999999997432100 000000000
Q ss_pred cc---cHH---HHHHHHHHc--------------CCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 156 LV---STS---QGKKMRRKI--------------KAAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 156 ~~---~~~---~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
.+ -.+ +........ ...+++++||++|+|++++++++...+.
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 00 000 111111111 2236999999999999999999998764
No 157
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.4e-22 Score=157.78 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=90.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC-CCCCCCc--------Ccccccc-ceeEEECCEEEEEEEEEcCCC-------c
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTEN-KFPTDYV--------PTVFDNY-PDTITVDNKTYDVTLWDTAGQ-------E 82 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~-~~~~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~ 82 (205)
....++|+|+|++|+|||||++++++. .+...+. ++..... ...+..++..+.+++||+||. +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 345789999999999999999997654 3333222 2222221 223334566788999999998 5
Q ss_pred ccccccc-------cCc-----------CCCcEEEEEEECCC-cchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 83 DYERLRP-------MSY-----------PNTDCFLLCFSIGS-TSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 83 ~~~~~~~-------~~~-----------~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
.++.+.. .++ ...++.+++|++++ ..++..+...|+..+ ..++|+++|+||+|+...+
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHH
Confidence 5555543 222 33333345555554 455555543555544 3589999999999997654
Q ss_pred hhhhhhhhhccccccH--HHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 144 KTIDKKKAAEVDLVST--SQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 144 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
.+.. +++..+++..++. ++++||+++.+ ++.|.++.+.+...
T Consensus 191 ------------ev~~~k~~i~~~~~~~~i~-~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 191 ------------ERERLKKRILDEIEEHNIK-IYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp ------------HHHHHHHHHHHHTTCC-CC-SCCCC----------CHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHHHHHHCCCC-EEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 2322 5677777777776 99999999999 89999888887664
No 158
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.85 E-value=3.1e-22 Score=162.04 Aligned_cols=161 Identities=20% Similarity=0.250 Sum_probs=106.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL 99 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 99 (205)
.+..+|+++|++++|||||++++....+.....+.+.... ...+..++ ..+.+|||||++.|...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3567999999999999999999987654432222211111 11222334 36899999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC-CceEEEcc
Q psy15714 100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK-AAEYLECS 178 (205)
Q Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S 178 (205)
+|+|+++....+.. +++..+... ++|+++++||+|+...+...-....... .. ++..++ ..+++++|
T Consensus 80 LVVda~~g~~~qT~--e~l~~~~~~--~vPiIVviNKiDl~~~~~~~v~~~l~~~-~~-------~~~~~~~~~~~v~vS 147 (501)
T 1zo1_I 80 LVVAADDGVMPQTI--EAIQHAKAA--QVPVVVAVNKIDKPEADPDRVKNELSQY-GI-------LPEEWGGESQFVHVS 147 (501)
T ss_dssp EEEETTTBSCTTTH--HHHHHHHHT--TCCEEEEEECSSSSTTCCCCTTCCCCCC-CC-------CTTCCSSSCEEEECC
T ss_pred EEeecccCccHHHH--HHHHHHHhc--CceEEEEEEeccccccCHHHHHHHHHHh-hh-------hHHHhCCCccEEEEe
Confidence 99999885322222 222333333 8999999999999754321000000000 00 111222 24699999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy15714 179 AKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 179 a~~~~~i~~~~~~i~~~ 195 (205)
|++|+|++++|+++...
T Consensus 148 AktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 148 AKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTTCTTCTTHHHHTTTT
T ss_pred eeeccCcchhhhhhhhh
Confidence 99999999999998753
No 159
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.8e-21 Score=139.96 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=85.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCC---CcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCC--
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTD---YVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN-- 94 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 94 (205)
....++|+++|++|+|||||++++.+..+... +.++... +...+.+.+||+||++.++..+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 35678999999999999999999999876441 1222211 1133579999999999988776666665
Q ss_pred --CcEEEEEEECC-CcchHHHHHHHHHHHHhhh-----CCCCCEEEEeeCcccccCc
Q psy15714 95 --TDCFLLCFSIG-STSSYENILSKWYPELKHH-----CPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 95 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~ 143 (205)
+|++++|||++ +..++..+. .|+..+... ..++|+++|+||+|+....
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ccCCEEEEEEECCCCchhHHHHH-HHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 888998887 555444332 2589999999999998754
No 160
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=1.5e-21 Score=148.11 Aligned_cols=160 Identities=18% Similarity=0.159 Sum_probs=89.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCC-------cCcccccc-ceeEEECCEEEEEEEEEcCCCcc-------c
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKF-PTDY-------VPTVFDNY-PDTITVDNKTYDVTLWDTAGQED-------Y 84 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~-------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~-------~ 84 (205)
...++|+|+|.+|+|||||+|++++... ...+ .+|..... ...+..++..+.+.||||||... +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 4579999999999999999999876544 3332 33333222 22333455567999999999732 2
Q ss_pred cccc------------------ccC--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714 85 ERLR------------------PMS--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144 (205)
Q Consensus 85 ~~~~------------------~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 144 (205)
..+. +.. -..+|+++++++.+... +......++..+.. ++|+++|+||+|+.....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHH
Confidence 1111 111 12367888888766532 22222255555554 799999999999865431
Q ss_pred hhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
. ....+.........++. ++.+||.+++|+++++++|.+.
T Consensus 162 ~----------~~~~~~i~~~l~~~~i~-v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 162 C----------QQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp H----------HHHHHHHHHHHHHTTCC-CCCC-----------CHHHHHT
T ss_pred H----------HHHHHHHHHHHHHcCCe-EEcCCCCCChhHHHHHHHHhcC
Confidence 1 11223445555566776 8999999999999999988765
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=4.3e-21 Score=157.01 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=84.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC--C---------------CCCCcCc---ccccc-c--eeEEECCEEEEEEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENK--F---------------PTDYVPT---VFDNY-P--DTITVDNKTYDVTLWD 77 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~--~---------------~~~~~~t---~~~~~-~--~~~~~~~~~~~~~i~D 77 (205)
.+..+|+++|.+++|||||+++|+... . ...+.+. .+... . ..+...+ +.+.|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 456799999999999999999996211 0 0000000 01111 1 2233344 6799999
Q ss_pred cCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 78 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
|||+.+|.......++.+|++|+|+|+++..+..... +...+... ++|+++|+||+|+....
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~--~~~~~~~~--~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK--LMEVCRLR--HTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH--HHHHHHTT--TCCEEEEEECTTSCCSC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCcccc
Confidence 9999999988888999999999999999987777653 44455554 89999999999997554
No 162
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.84 E-value=4.6e-21 Score=155.98 Aligned_cols=159 Identities=14% Similarity=0.038 Sum_probs=100.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCC----------------------cCc-----ccccc-ceeEEECCE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENK--FPTDY----------------------VPT-----VFDNY-PDTITVDNK 69 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~----------------------~~t-----~~~~~-~~~~~~~~~ 69 (205)
.+..+||+++|.+++|||||+++|+... +...+ ..+ .+... .....+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 4567999999999999999999997541 11000 000 01111 122233344
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHH-----HHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYEN-----ILSKWYPELKHHCPKVPIILVGTKADLRSENK 144 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 144 (205)
...+.|||+||+++|.......+..+|++|+|+|+++..+... ...+.+..+... ...|+++|+||+|+...+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchH
Confidence 4689999999999999988889999999999999998643321 111223333332 2356999999999976431
Q ss_pred hhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHH
Q psy15714 145 TIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQ 187 (205)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 187 (205)
... ....++...+.+..+. .+++++||++|+|+++
T Consensus 189 ~~~--------~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRF--------EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHH--------HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHH--------HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 100 1122334444444443 4589999999999975
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.84 E-value=6.3e-21 Score=151.70 Aligned_cols=163 Identities=13% Similarity=0.061 Sum_probs=111.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC-------CCCC--CcCc-----ccccc-ceeEEECCEEEEEEEEEcCCCccccc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENK-------FPTD--YVPT-----VFDNY-PDTITVDNKTYDVTLWDTAGQEDYER 86 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~-------~~~~--~~~t-----~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~ 86 (205)
..+||+++|++++|||||+++|.+.. +... .... .+... .....+......+.|||+||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 45899999999999999999998631 1110 0000 00000 01122333346789999999999988
Q ss_pred ccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714 87 LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 87 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (205)
.....+..+|++|+|+|+++....+.. +++..+... ++| +++++||+|+....... ....++.+++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~vp~iivviNK~Dl~~~~~~~---------~~~~~~~~~~ 148 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQI--GVEHVVVYVNKADAVQDSEMV---------ELVELEIREL 148 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCSCHHHH---------HHHHHHHHHH
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCeEEEEEECcccCCCHHHH---------HHHHHHHHHH
Confidence 878889999999999999987654443 333445444 788 78999999997522100 1233566777
Q ss_pred HHHcCC----ceEEEcccCCCCC----------HHHHHHHHHHHHH
Q psy15714 166 RRKIKA----AEYLECSAKLNEG----------LDQVFIAAVRSAV 197 (205)
Q Consensus 166 ~~~~~~----~~~~~~Sa~~~~~----------i~~~~~~i~~~~~ 197 (205)
++..+. .+++++||++|.| ++++++.+.+.+.
T Consensus 149 l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 149 LTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 777764 4699999999764 8899988877654
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=151.96 Aligned_cols=159 Identities=15% Similarity=0.091 Sum_probs=105.9
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCC--CCCC----------CcCcccccc-----------------c---eeEEE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENK--FPTD----------YVPTVFDNY-----------------P---DTITV 66 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~----------~~~t~~~~~-----------------~---~~~~~ 66 (205)
.....+||+++|.+++|||||+++|+... +... ..++++..+ + ....+
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 34567999999999999999999998653 1111 112211100 0 01112
Q ss_pred CCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCC-CEEEEeeCcccccCchh
Q psy15714 67 DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV-PIILVGTKADLRSENKT 145 (205)
Q Consensus 67 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~~ 145 (205)
......+.|||+||++.|...+...+..+|++|+|+|+++....+.. +|+..+... ++ |+++|+||+|+......
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEcCcCCcccHH
Confidence 22336799999999999988877889999999999999987644332 455555444 55 59999999999763210
Q ss_pred hhhhhhhccccccHHHHHHHHHHcC--C--ceEEEcccCCCCCHHHHH
Q psy15714 146 IDKKKAAEVDLVSTSQGKKMRRKIK--A--AEYLECSAKLNEGLDQVF 189 (205)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~Sa~~~~~i~~~~ 189 (205)
.. ....++...+++.++ . .+++++||++|+|++++|
T Consensus 176 ~~--------~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 176 VF--------ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HH--------HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HH--------HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 00 112455667777766 2 459999999999998753
No 165
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=9.4e-22 Score=159.08 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=101.9
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCC--------Cccccccc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAG--------QEDYERLR 88 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~ 88 (205)
...+...+|+++|.+|+|||||++++.+..+.. ...+.+... ............+.+||||| ++.++...
T Consensus 18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 18 GSHMGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA 96 (456)
T ss_dssp -----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred hhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence 334566899999999999999999999876531 122222222 22233333345799999999 66677777
Q ss_pred ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714 89 PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK 168 (205)
Q Consensus 89 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (205)
..+++.+|++++|+|..+..+..+ ..+...+.+. ++|+++|+||+|+..... ...++ ..
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~~--~~pvilV~NK~D~~~~~~----------------~~~e~-~~ 155 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAAD--EEVAKILYRT--KKPVVLAVNKLDNTEMRA----------------NIYDF-YS 155 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHH--HHHHHHHTTC--CSCEEEEEECC-------------------------CCS-GG
T ss_pred HhhHhhCCEEEEEEeCCCCCChHH--HHHHHHHHHc--CCCEEEEEECccchhhhh----------------hHHHH-HH
Confidence 778899999999999877544433 2455555553 899999999999864321 00001 12
Q ss_pred cCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 169 IKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
++....+++||++|.|++++++++.+.+..
T Consensus 156 lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 156 LGFGEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp GSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred cCCCceEEeecccccchHHHHHHHHhhccc
Confidence 233346899999999999999999877643
No 166
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.83 E-value=4.8e-20 Score=134.23 Aligned_cols=164 Identities=13% Similarity=0.062 Sum_probs=103.4
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCCcc----------ccc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQED----------YER 86 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~----------~~~ 86 (205)
.......+|+++|++|+|||||++++.+..+...+.++.+.... ..+.+++ .+.+||+||... ++.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence 34556689999999999999999999987754444455544432 2233333 478999999742 222
Q ss_pred ccccCc---CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH
Q psy15714 87 LRPMSY---PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK 163 (205)
Q Consensus 87 ~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (205)
....++ ..++++++++|+++..+.... .+...+... ++|+++++||+|+.+.... +...+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~~----------~~~~~~~~ 163 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGAR----------KAQLNMVR 163 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHHH----------HHHHHHHH
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchhH----------HHHHHHHH
Confidence 222222 578999999999987655331 222333333 7999999999998754211 22234566
Q ss_pred HHHHHcC-CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 164 KMRRKIK-AAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 164 ~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
.++...+ ...++++||+++.|++++++++.+.+.+
T Consensus 164 ~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 164 EAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 6666554 3457899999999999999999887543
No 167
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.83 E-value=1.9e-20 Score=150.56 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=105.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCcC---------------------------cccccc-ceeEEECCEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTDYVP---------------------------TVFDNY-PDTITVDNKT 70 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~---------------------------t~~~~~-~~~~~~~~~~ 70 (205)
+..++|+++|++++|||||+++|+.. .+...... ..+... .....+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999864 33211100 000000 0011122334
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHH------HHHHHHHhhhCCCC-CEEEEeeCcccccCc
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENIL------SKWYPELKHHCPKV-PIILVGTKADLRSEN 143 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~------~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~ 143 (205)
..+.|||+||+++|...+...+..+|++|+|+|+++ .+++... .+++..+... ++ |+++++||+|+....
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence 679999999999999888889999999999999998 6666433 1222222222 44 699999999997632
Q ss_pred hhhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHHHHH
Q psy15714 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQVFI 190 (205)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~~ 190 (205)
..... .....++.+.+++..+. .+++++||++|+|+.++++
T Consensus 161 ~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKR------YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHH------HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHH------HHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 10000 02234567777777663 4599999999999986543
No 168
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=2.6e-20 Score=146.52 Aligned_cols=148 Identities=13% Similarity=0.038 Sum_probs=104.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI 104 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 104 (205)
+|+++|.+++|||||+++|... -.|+... ...+......+.+||+||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~------giTi~~~---~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK------GTSSDIT---MYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE------EEESSSE---EEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC------CEEEEee---EEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 9999999999999999999811 1111111 12233333569999999999997776677899999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhCCCCCE-EEEee-CcccccCchhhhhhhhhccccccHHHHHHHHHHcC--CceEEE--cc
Q psy15714 105 GSTSSYENILSKWYPELKHHCPKVPI-ILVGT-KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK--AAEYLE--CS 178 (205)
Q Consensus 105 ~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~S 178 (205)
++.. ..... +|+..+... ++|. ++++| |+|+ ..... ....++.+.+.+..+ ..++++ +|
T Consensus 93 ~~g~-~~qt~-e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~----------~~~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 93 PQGL-DAHTG-ECIIALDLL--GFKHGIIALTRSDST-HMHAI----------DELKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp TTCC-CHHHH-HHHHHHHHT--TCCEEEEEECCGGGS-CHHHH----------HHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred CCCC-cHHHH-HHHHHHHHc--CCCeEEEEEEeccCC-CHHHH----------HHHHHHHHHHHHhcCCCceEEEecccc
Confidence 5443 33333 566666655 7888 89999 9999 43210 011245555555443 346999 99
Q ss_pred cCC---CCCHHHHHHHHHHHHH
Q psy15714 179 AKL---NEGLDQVFIAAVRSAV 197 (205)
Q Consensus 179 a~~---~~~i~~~~~~i~~~~~ 197 (205)
|++ ++|++++++.|.+.+.
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhcc
Confidence 999 9999999999988764
No 169
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=7.3e-20 Score=158.49 Aligned_cols=166 Identities=14% Similarity=0.062 Sum_probs=113.6
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcC-------CCCC--CCc-----Ccccccc-ceeEEECCEEEEEEEEEcCCCcc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTEN-------KFPT--DYV-----PTVFDNY-PDTITVDNKTYDVTLWDTAGQED 83 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~-------~~~~--~~~-----~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 83 (205)
.....++|+++|++++|||||++++.+. .+.. ..+ .+.+... ...+.++.....+.|||+||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 3456799999999999999999999863 1100 000 1111111 11233444446799999999999
Q ss_pred cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQG 162 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (205)
|.......+..+|++|+|+|+++....+.. +|+..+... ++| ++|++||+|+....... ....++.
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e~l---------e~i~eEi 438 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEELL---------ELVEMEV 438 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHHHH---------HHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchhhH---------HHHHHHH
Confidence 988888889999999999999987544332 455555555 788 79999999997532100 1233566
Q ss_pred HHHHHHcCC----ceEEEcccCCC--------CCHHHHHHHHHHHHH
Q psy15714 163 KKMRRKIKA----AEYLECSAKLN--------EGLDQVFIAAVRSAV 197 (205)
Q Consensus 163 ~~~~~~~~~----~~~~~~Sa~~~--------~~i~~~~~~i~~~~~ 197 (205)
..+++..+. .+++++||++| .|++++|+.|.+.+.
T Consensus 439 ~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 439 RELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 777777663 46999999999 468899988877543
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=1.4e-20 Score=144.25 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=100.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC------CcCc-----------------------cccc------------
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTD------YVPT-----------------------VFDN------------ 59 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~------~~~t-----------------------~~~~------------ 59 (205)
...++|+|+|.+|+|||||++++.+..+.+. ..|+ ....
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 4567999999999999999999999887421 1121 0000
Q ss_pred ------c-c--eeEEEC-CEEEEEEEEEcCCCc-------------ccccccccCcCCCcEEE-EEEECCCcchHHHHHH
Q psy15714 60 ------Y-P--DTITVD-NKTYDVTLWDTAGQE-------------DYERLRPMSYPNTDCFL-LCFSIGSTSSYENILS 115 (205)
Q Consensus 60 ------~-~--~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~ 115 (205)
+ . ..+.+. .....+.+|||||.. .+......+++.++.++ +|+|+++..+..+..
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~- 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH-
Confidence 0 0 000000 012579999999963 34445556777777666 799998765444432
Q ss_pred HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH--HHHcCCceEEEcccCCCCCHHHHHHHHH
Q psy15714 116 KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM--RRKIKAAEYLECSAKLNEGLDQVFIAAV 193 (205)
Q Consensus 116 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 193 (205)
.|+..+... +.|+++|+||+|+..... ...+..+.. ....+..+++++||++|.|++++|+++.
T Consensus 183 ~~~~~~~~~--~~~~i~V~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~ 248 (299)
T 2aka_B 183 KIAKEVDPQ--GQRTIGVITKLDLMDEGT------------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 248 (299)
T ss_dssp HHHHHHCTT--CSSEEEEEECGGGSCTTC------------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHH
T ss_pred HHHHHhCCC--CCeEEEEEEccccCCCCc------------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHH
Confidence 355555443 799999999999976431 111111110 0011233578999999999999999987
Q ss_pred HH
Q psy15714 194 RS 195 (205)
Q Consensus 194 ~~ 195 (205)
+.
T Consensus 249 ~~ 250 (299)
T 2aka_B 249 AE 250 (299)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.82 E-value=1.7e-19 Score=145.81 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=103.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------C----c--C---cccccc-ceeEEECCEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTD------------------Y----V--P---TVFDNY-PDTITVDNKT 70 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~------------------~----~--~---t~~~~~-~~~~~~~~~~ 70 (205)
+..++|+++|.+++|||||+++|+.. .+... + . + ..+... .....+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45699999999999999999999864 22110 0 0 0 001111 1111233334
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc---hHH---HHHHHHHHHHhhhCCCCC-EEEEeeCcccccCc
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS---SYE---NILSKWYPELKHHCPKVP-IILVGTKADLRSEN 143 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 143 (205)
..+.|||+||++.|.......+..+|++|+|+|+++.. +|+ ... +++..+... ++| +++++||+|+....
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~-~~~~~~~~~--~v~~iivviNK~Dl~~~~ 161 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHALLAFTL--GVRQLIVAVNKMDSVKWD 161 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHHHHHHHT--TCCEEEEEEECGGGGTTC
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH-HHHHHHHHc--CCCeEEEEEEccccccCC
Confidence 67999999999999988888999999999999998763 221 222 233333333 676 99999999997421
Q ss_pred hhhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHHH
Q psy15714 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQV 188 (205)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 188 (205)
... .....++...+++..+. .+++++||++|+|+.++
T Consensus 162 ~~~--------~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 162 ESR--------FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHH--------HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHH--------HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 100 01234556667676664 45999999999998744
No 172
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.4e-19 Score=149.09 Aligned_cols=158 Identities=14% Similarity=0.072 Sum_probs=101.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCc------------C-----------------cccccc-ceeEEECCE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYV------------P-----------------TVFDNY-PDTITVDNK 69 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~------------~-----------------t~~~~~-~~~~~~~~~ 69 (205)
....+||+++|.+++|||||+++|+.....-... . ..+... .....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4567999999999999999999998653211100 0 001111 111122223
Q ss_pred EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc---hH---HHHHHHHHHHHhhhCCCC-CEEEEeeCcccccC
Q psy15714 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS---SY---ENILSKWYPELKHHCPKV-PIILVGTKADLRSE 142 (205)
Q Consensus 70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~ 142 (205)
...+.|||+||++.|.......+..+|++|+|+|+++.. ++ .... +.+..+... ++ |++||+||+|+...
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~-e~l~~~~~l--gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTK-EHMLLASSL--GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHH-HHHHHHHTT--TCCEEEEEEECTTTTTT
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHH-HHHHHHHHc--CCCeEEEEEecccccch
Confidence 367999999999999998888999999999999998742 00 0111 222223322 44 49999999999763
Q ss_pred chhhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHHH
Q psy15714 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQV 188 (205)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 188 (205)
+.... ....++...+....+. .+++++||++|.|++++
T Consensus 321 ~~~~~--------~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRF--------EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHH--------HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHH--------HHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 21100 1123344555555553 45999999999999876
No 173
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.81 E-value=2.4e-20 Score=151.02 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=92.4
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhc--CCCCCC-------------------------------CcCccccccceeEE
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTE--NKFPTD-------------------------------YVPTVFDNYPDTIT 65 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~~-------------------------------~~~t~~~~~~~~~~ 65 (205)
.....++|+++|+.++|||||+++|+. +.+... .-.|+... ...+.
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~-~~~~~ 117 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG-RAYFE 117 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC-----------------------------CCEEE
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee-eEEEe
Confidence 346779999999999999999999874 222100 00011111 11233
Q ss_pred ECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc---hHHH---HHHHHHHHHhhhCCCCC-EEEEeeCcc
Q psy15714 66 VDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS---SYEN---ILSKWYPELKHHCPKVP-IILVGTKAD 138 (205)
Q Consensus 66 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~~p-~ivv~nK~D 138 (205)
.++ ..+.|||+||++.|...+...+..+|++|+|+|+++.. +|+. .. +.+..+... ++| ++|++||+|
T Consensus 118 ~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~-e~l~~~~~~--~vp~iivviNK~D 192 (467)
T 1r5b_A 118 TEH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTR-EHAVLARTQ--GINHLVVVINKMD 192 (467)
T ss_dssp CSS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHH-HHHHHHHHT--TCSSEEEEEECTT
T ss_pred cCC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHH-HHHHHHHHc--CCCEEEEEEECcc
Confidence 333 57999999999999988888899999999999999862 2221 11 122222233 787 999999999
Q ss_pred cccCchhhhhhhhhccccccHHHHHHHHHHc-CC-----ceEEEcccCCCCCHHHHH
Q psy15714 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKI-KA-----AEYLECSAKLNEGLDQVF 189 (205)
Q Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i~~~~ 189 (205)
+......... .....++...+++.. +. .+++++||++|+|++++|
T Consensus 193 l~~~~~~~~~------~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 193 EPSVQWSEER------YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp STTCSSCHHH------HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCccccHHH------HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9642210000 012334556666655 32 359999999999998765
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=2.6e-20 Score=154.51 Aligned_cols=158 Identities=12% Similarity=0.050 Sum_probs=86.1
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCC------------------------cC---cccccc-ceeEEECC
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENK--FPTDY------------------------VP---TVFDNY-PDTITVDN 68 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~------------------------~~---t~~~~~-~~~~~~~~ 68 (205)
.....++|+++|.+++|||||+++|+... +.... .+ ..+... .....+..
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 45677899999999999999999996421 10000 00 000111 01111222
Q ss_pred EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc---hH--HHHHHHHHHHHhhhCCCCC-EEEEeeCcccccC
Q psy15714 69 KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS---SY--ENILSKWYPELKHHCPKVP-IILVGTKADLRSE 142 (205)
Q Consensus 69 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 142 (205)
....+.||||||+..|.......+..+|++|+|+|+++.. .+ .....+.+..+... ++| ++||+||+|+...
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc
Confidence 3467999999999999998888999999999999998642 11 11111222333333 676 9999999999753
Q ss_pred chhhhhhhhhccccccHHHHHHHH-HHcCC----ceEEEcccCCCCCHH
Q psy15714 143 NKTIDKKKAAEVDLVSTSQGKKMR-RKIKA----AEYLECSAKLNEGLD 186 (205)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~ 186 (205)
..... ....++...+. +..+. .+++++||++|+|++
T Consensus 331 ~~~~~--------~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 331 SEDRF--------QEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CHHHH--------HHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cHHHH--------HHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 21100 11233444454 44454 259999999999998
No 175
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.80 E-value=2.3e-20 Score=143.19 Aligned_cols=133 Identities=16% Similarity=0.108 Sum_probs=107.9
Q ss_pred HHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc-hHHHHHH
Q psy15714 38 CLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS-SYENILS 115 (205)
Q Consensus 38 tli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 115 (205)
+|+.++..+.|. ..+.||+++.+...+..++ ++.|||+ +++|+.+++.+++++|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~- 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID- 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH-
Confidence 688889999998 8889999976653332233 6899999 8999999999999999999999999987 677665
Q ss_pred HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC--CceEEEcccCCCCCHHHHHHHHH
Q psy15714 116 KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK--AAEYLECSAKLNEGLDQVFIAAV 193 (205)
Q Consensus 116 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~ 193 (205)
.|+..+... ++|+++|+||+|+.+.+ .+ +++..+++.+. .. ++++||++|.|++++|..+.
T Consensus 106 ~~l~~~~~~--~~piilv~NK~DL~~~~------------~v--~~~~~~~~~~~~~~~-~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEKN--ELETVMVINKMDLYDED------------DL--RKVRELEEIYSGLYP-IVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHHT--TCEEEEEECCGGGCCHH------------HH--HHHHHHHHHHTTTSC-EEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHHC--CCCEEEEEeHHHcCCch------------hH--HHHHHHHHHHhhhCc-EEEEECCCCcCHHHHHHHhc
Confidence 898877664 89999999999997643 22 44566666665 54 99999999999999998764
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=4e-19 Score=133.89 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=85.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCc------
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSY------ 92 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~------ 92 (205)
.+.++|+++|.+|+|||||++++++..+ ...+.+++.......+..++ ..+.||||||+..+......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 4689999999999999999999998875 33333333333334455666 4799999999988765543333
Q ss_pred ---CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-C--CCCEEEEeeCcccccC
Q psy15714 93 ---PNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-P--KVPIILVGTKADLRSE 142 (205)
Q Consensus 93 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~ivv~nK~Dl~~~ 142 (205)
..+|++++|++++... +......|+..+.... . ..|+++|+||+|+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2789999999987654 4444336777776643 2 2499999999998643
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.79 E-value=1.4e-18 Score=146.04 Aligned_cols=117 Identities=18% Similarity=0.080 Sum_probs=84.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc----------------cccc-ceeEEECCEEEEEEEEEcCCCc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV----------------FDNY-PDTITVDNKTYDVTLWDTAGQE 82 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~----------------~~~~-~~~~~~~~~~~~~~i~D~~g~~ 82 (205)
..+..+|+++|+.|+|||||++++...........++ +..+ .....+....+.++|||+||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 3456799999999999999999998533221111110 1111 2222333334789999999999
Q ss_pred ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR 140 (205)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 140 (205)
.|.......++.+|++++|+|+++....... .++..+... ++|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence 9988888889999999999999887654443 455555554 89999999999997
No 178
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.78 E-value=1.7e-18 Score=135.46 Aligned_cols=133 Identities=18% Similarity=0.168 Sum_probs=90.8
Q ss_pred EEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCC----------cchHHHHHHHHHHHHhhh--CCCCCEE
Q psy15714 64 ITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGS----------TSSYENILSKWYPELKHH--CPKVPII 131 (205)
Q Consensus 64 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~i 131 (205)
+.+++ +.+.+||++|++.++..|..++++++++|||||+++ ..++.+.. .|...+... ..++|++
T Consensus 196 ~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~-~~~~~i~~~~~~~~~piI 272 (362)
T 1zcb_A 196 FEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL-NIFETIVNNRVFSNVSII 272 (362)
T ss_dssp EEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEE
T ss_pred eeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHH-HHHHHHhcchhhCCCCEE
Confidence 34444 789999999999999999999999999999999999 78899887 455555432 3689999
Q ss_pred EEeeCcccccCchhh-hhhh---hhccccccHHHHHHHHH-----------HcCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 132 LVGTKADLRSENKTI-DKKK---AAEVDLVSTSQGKKMRR-----------KIKAAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 132 vv~nK~Dl~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
+++||+|+....... .... ......++.+++..++. ..+ ..+++|||+++.||+++|.++.+.+
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHHH
Confidence 999999996432100 0000 00011256677777652 223 3489999999999999999999988
Q ss_pred Hhhc
Q psy15714 197 VKKQ 200 (205)
Q Consensus 197 ~~~~ 200 (205)
....
T Consensus 352 ~~~~ 355 (362)
T 1zcb_A 352 LHDN 355 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 179
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.78 E-value=6.9e-20 Score=140.50 Aligned_cols=164 Identities=16% Similarity=0.103 Sum_probs=87.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC-CCCCCC--------cCcccccc-ceeEEECCEEEEEEEEEcCCC-------c
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTEN-KFPTDY--------VPTVFDNY-PDTITVDNKTYDVTLWDTAGQ-------E 82 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~-~~~~~~--------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~ 82 (205)
....++|+++|++|+|||||++++.+. .++... .++..... ......++....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345689999999999999999998765 443322 11211111 112222445578999999997 4
Q ss_pred ccccccc-------cC-----------cCC--CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 83 DYERLRP-------MS-----------YPN--TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 83 ~~~~~~~-------~~-----------~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
.++.+.. .+ +.. +++++|+.+.+. .+++.....+ +.....++|+++|+||.|+...
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~---l~~l~~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAF---MKAIHNKVNIVPVIAKADTLTL 170 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHH---HHHHTTTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHH---HHHHHhcCCEEEEEEeCCCCCH
Confidence 4443322 11 112 233444444322 2344432233 3333457899999999999764
Q ss_pred chhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+.. ....+++.++++..++. ++++||+++ |++++|.++.+.+...
T Consensus 171 ~e~----------~~~~~~~~~~~~~~~~~-~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 171 KER----------ERLKKRILDEIEEHNIK-IYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHH----------HHHHHHHHHHHHHTTCC-CCCCC----------CHHHHHHHHTT
T ss_pred HHH----------HHHHHHHHHHHHHcCCe-EEecCCccc-cccHHHHHHHHHhhcC
Confidence 311 23456788888998876 999999999 9999999999988654
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=3.5e-18 Score=139.92 Aligned_cols=120 Identities=17% Similarity=0.132 Sum_probs=81.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCC-----------CC-------cCcccccc-ceeEEECCEEEEEEEEEcC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPT-----------DY-------VPTVFDNY-PDTITVDNKTYDVTLWDTA 79 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~-----------~~-------~~t~~~~~-~~~~~~~~~~~~~~i~D~~ 79 (205)
.+..+|+++|++|+|||||++++... .+.. .. ..+.+... .....+....+.+.|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 45689999999999999999999863 2100 00 00111111 1122222233679999999
Q ss_pred CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144 (205)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 144 (205)
|+..|......++..+|++|+|+|+++....... .++..+... ++|+++++||+|+.....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~--~~~~~~~~~--~ipiivviNK~Dl~~~~~ 151 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR--KLMEVTRLR--DTPILTFMNKLDRDIRDP 151 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHTTT--TCCEEEEEECTTSCCSCH
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH--HHHHHHHHc--CCCEEEEEcCcCCccccH
Confidence 9999988777789999999999999987543332 344444444 899999999999976543
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.77 E-value=2.6e-18 Score=145.04 Aligned_cols=175 Identities=12% Similarity=0.092 Sum_probs=107.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccc--------cccceeEEE-------------------------
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVF--------DNYPDTITV------------------------- 66 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~--------~~~~~~~~~------------------------- 66 (205)
...++|+|+|.+|+|||||+|+|.+..+.+ ...+++. ........+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 467999999999999999999999876532 2222220 000001100
Q ss_pred ---------------------CCEE--EEEEEEEcCCCcc---cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHH
Q psy15714 67 ---------------------DNKT--YDVTLWDTAGQED---YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE 120 (205)
Q Consensus 67 ---------------------~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 120 (205)
+... ..+.||||||... .......+++.+|++++|+|+++..+..+.. .|...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHH
Confidence 0000 2589999999654 2344556788999999999999888777764 56555
Q ss_pred HhhhCCCCCEEEEeeCcccccCchhhhh--hhhhcc-ccccHHHHHHHHHHcC-------CceEEEcccC----------
Q psy15714 121 LKHHCPKVPIILVGTKADLRSENKTIDK--KKAAEV-DLVSTSQGKKMRRKIK-------AAEYLECSAK---------- 180 (205)
Q Consensus 121 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~Sa~---------- 180 (205)
+... +.|+++|+||+|+......... ...... ..+.......+....+ ..+++++||+
T Consensus 226 l~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 226 IKGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TTTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred HHhh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 5544 7899999999998754200000 000000 0000000011111111 1248999999
Q ss_pred ----CCCCHHHHHHHHHHHHHh
Q psy15714 181 ----LNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 181 ----~~~~i~~~~~~i~~~~~~ 198 (205)
++.|+++++..+.+.+..
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887654
No 182
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.77 E-value=3.7e-18 Score=129.12 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=82.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCccccccccc--------
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPM-------- 90 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------- 90 (205)
...++|+++|.+|+|||||++++++..+. ..+.+++.......+..++ ..+.||||||...+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 45799999999999999999999988753 2222222222222333344 67999999998776533221
Q ss_pred -CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CC--CCEEEEeeCcccccCc
Q psy15714 91 -SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PK--VPIILVGTKADLRSEN 143 (205)
Q Consensus 91 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~p~ivv~nK~Dl~~~~ 143 (205)
..+.+|++++|+|++.. ++......|+..+.... .+ .|+++|+||+|+...+
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 23479999999998753 34444346777776543 22 7999999999986543
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=136.36 Aligned_cols=161 Identities=17% Similarity=0.110 Sum_probs=86.5
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCc--------Ccccccc-ceeEEECCEEEEEEEEEcCCCcccc----
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYV--------PTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYE---- 85 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~---- 85 (205)
-..-.++|+|+|++|+|||||++.+.+..+..... ++..... ...+...+....+++||++|...+.
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 34566899999999999999999999877632211 1111110 1112223444579999999975431
Q ss_pred ---c------------------ccccCcCCCcEEEEEEECCCc-chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 86 ---R------------------LRPMSYPNTDCFLLCFSIGST-SSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 86 ---~------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
. +.+.++.++++.+++|+.+.- .++......|+..+. .++|+|+|+||+|+...+
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHH
Confidence 1 224456667766666665543 345444335766664 379999999999987644
Q ss_pred hhhhhhhhhcccccc--HHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714 144 KTIDKKKAAEVDLVS--TSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195 (205)
Q Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 195 (205)
.+. .+++...+...++. ++++||.++.+++++|..+.+.
T Consensus 184 ------------ev~~~k~~i~~~~~~~~i~-~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 184 ------------ECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp ------------HHHHHHHHHHHHHHHHTCC-CCCCC-----------------
T ss_pred ------------HHHHHHHHHHHHHHHcCCe-EEeCCCCCCcCHHHHHHHHHhh
Confidence 333 36677788888877 8999999999999988877654
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.75 E-value=8.3e-18 Score=133.64 Aligned_cols=159 Identities=19% Similarity=0.126 Sum_probs=106.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCccc----cccccc---CcCCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY----ERLRPM---SYPNT 95 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~~ 95 (205)
-.|+++|++|||||||++++.+.... ..+..++.......+..++ ...+.+||+||.... ..+... .+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 35799999999999999999876431 1222222111112233333 246899999997432 112111 24568
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (205)
+.++.++|++ ...+.++. .|...+..+. .+.|.++|+||+|+.... ..++.....+..+..
T Consensus 237 ~~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~~--------------~~~~l~~~l~~~g~~ 300 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEEE--------------AVKALADALAREGLA 300 (416)
T ss_dssp SEEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCHH--------------HHHHHHHHHHTTTSC
T ss_pred HhhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhHH--------------HHHHHHHHHHhcCCe
Confidence 9999999998 56666665 6766666554 378999999999986531 122333444444555
Q ss_pred eEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714 173 EYLECSAKLNEGLDQVFIAAVRSAVKKQ 200 (205)
Q Consensus 173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 200 (205)
++.+||++++|+++++++|.+.+....
T Consensus 301 -vi~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 301 -VLPVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp -EEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred -EEEEECCCccCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999887643
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.75 E-value=2.6e-17 Score=138.84 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=84.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc--CCCC------C------------CCcCccccccceeEEECCEEEEEEEEEcC
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE--NKFP------T------------DYVPTVFDNYPDTITVDNKTYDVTLWDTA 79 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~--~~~~------~------------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~ 79 (205)
..+..+|+|+|.+|+|||||++++.. +.+. . ....|+... ...+..++ +.+.|||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~~--~~i~liDTP 85 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWKD--HRINIIDTP 85 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC-EEEEEETT--EEEEEECCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEECC--eEEEEEECc
Confidence 45678999999999999999999984 2211 0 001111111 11223333 679999999
Q ss_pred CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
|+..|.......++.+|++|+|+|+++..+..... .|. .+... ++|+++|+||+|+....
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~-~~~~~--~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWR-QAEKY--KVPRIAFANKMDKTGAD 145 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHH-HHHHT--TCCEEEEEECTTSTTCC
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHH-HHHHc--CCCEEEEEECCCcccCC
Confidence 99999888888899999999999999988777654 454 34444 89999999999997653
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.73 E-value=1.7e-18 Score=136.06 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=98.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccc------------------------------------------
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDN------------------------------------------ 59 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~------------------------------------------ 59 (205)
...+|+|+|++|+|||||++++.+..+.+....+....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 33499999999999999999999987633322211000
Q ss_pred --------c---ceeEEE-CCEEEEEEEEEcCCCccc-------------ccccccCcCCCcEEEEEEECCCcchHHHHH
Q psy15714 60 --------Y---PDTITV-DNKTYDVTLWDTAGQEDY-------------ERLRPMSYPNTDCFLLCFSIGSTSSYENIL 114 (205)
Q Consensus 60 --------~---~~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 114 (205)
+ ...+.+ ......+.+||+||...+ ......+++.+|++++|+|..+......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~-- 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence 0 000110 011235899999998765 4455677899999999998765433221
Q ss_pred HHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHH
Q psy15714 115 SKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAA 192 (205)
Q Consensus 115 ~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 192 (205)
.|+..+.... .+.|+++|+||+|+.... ....+....+...++.. |+++|+..+.++++.+...
T Consensus 191 -~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 191 -DAIKISREVDPSGDRTFGVLTKIDLMDKG------------TDAVEILEGRSFKLKYP-WVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp -HHHHHHHHSCTTCTTEEEEEECGGGCCTT------------CCSHHHHTTSSSCCSSC-CEEECCCCHHHHHTTCCHH
T ss_pred -HHHHHHHHhcccCCCEEEEEeCCccCCCc------------ccHHHHHcCccccccCC-eEEEEECChHHhccCCCHH
Confidence 3444444443 478999999999998653 22223333333344444 8888888888877665443
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.73 E-value=8.6e-17 Score=135.74 Aligned_cols=118 Identities=17% Similarity=0.102 Sum_probs=84.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc--CCCCCC-----------CcC---cccccc---ceeEEECCEEEEEEEEEcCC
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE--NKFPTD-----------YVP---TVFDNY---PDTITVDNKTYDVTLWDTAG 80 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~~-----------~~~---t~~~~~---~~~~~~~~~~~~~~i~D~~g 80 (205)
..+..+|+++|.+|+|||||++++.. +.+... +.+ ..+... ...+..++ +.+.||||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 34568999999999999999999985 332110 000 000011 11233444 6799999999
Q ss_pred CcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
+..|.......++.+|++|+|+|+++..+..... .|. .+... ++|+++|+||+|+....
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~-~~~~~--~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWR-QATTY--GVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHH-HHHHT--TCCEEEEEECTTSTTCC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHH-HHHHc--CCCEEEEEECCCccccc
Confidence 9998888788889999999999999987777653 443 45444 89999999999997653
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.73 E-value=1.9e-18 Score=133.40 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=67.1
Q ss_pred EEEEEEEcCCCcc-------------cccccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q psy15714 71 YDVTLWDTAGQED-------------YERLRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTK 136 (205)
Q Consensus 71 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK 136 (205)
..+.+|||||... +......++..+|++++|+|+.+.. ...... .+...+.. .+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~-~i~~~~~~--~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDAL-QLAKEVDP--EGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHH-HHHHHHCS--SCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHH-HHHHHhCC--CCCcEEEEEcC
Confidence 4699999999753 3344556788999999999974432 111111 33344433 38999999999
Q ss_pred cccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc---CC---CCCHHHHHHHHHHHHHh
Q psy15714 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA---KL---NEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 137 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~---~~~i~~~~~~i~~~~~~ 198 (205)
+|+..... ...+.........+. .++++|+ .+ +.|++++++.+.+.+..
T Consensus 208 ~Dl~~~~~------------~~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGT------------DAMEVLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSC------------CCHHHHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcch------------HHHHHHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99976431 111111110011112 2555554 44 78899999988776644
No 189
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=1.2e-16 Score=134.94 Aligned_cols=120 Identities=15% Similarity=0.056 Sum_probs=83.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC-----------CcC---cccccc-c--eeEEE-----CCEEEEEEE
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTEN--KFPTD-----------YVP---TVFDNY-P--DTITV-----DNKTYDVTL 75 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~-----------~~~---t~~~~~-~--~~~~~-----~~~~~~~~i 75 (205)
..+..+|+|+|..|+|||||++++... .+... +.+ ..+... . ..+.. ++..+.+.|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 345689999999999999999999742 22110 000 000000 0 11222 223478999
Q ss_pred EEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 76 WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 76 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
|||||+.+|.......++.+|++|+|+|+++..+..... .| ..+... ++|+++|+||+|+...+
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~-~~~~~~--~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VW-RQANKY--KVPRIAFVNKMDRMGAN 150 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HH-HHHHHc--CCCEEEEEeCCCccccc
Confidence 999999999888888899999999999999886655543 34 333333 89999999999987653
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.70 E-value=7.5e-17 Score=127.81 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=47.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCcccccccee---------------------EEECC-EEEEEEEEEcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDT---------------------ITVDN-KTYDVTLWDTAG 80 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~---------------------~~~~~-~~~~~~i~D~~g 80 (205)
++|+++|.+++|||||++++++.... ..+..++....... ..+++ ...++.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632 23322222111111 11233 257899999999
Q ss_pred Ccc----cccccc---cCcCCCcEEEEEEECCCc
Q psy15714 81 QED----YERLRP---MSYPNTDCFLLCFSIGST 107 (205)
Q Consensus 81 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 107 (205)
... .+.+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222322 457899999999999875
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.69 E-value=7.8e-17 Score=118.14 Aligned_cols=155 Identities=14% Similarity=0.067 Sum_probs=94.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-------------ceeEEECC------------------EE
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-------------PDTITVDN------------------KT 70 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-------------~~~~~~~~------------------~~ 70 (205)
+..+|+++|.+|+|||||++++............+.... ...+.++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457999999999999999999886522111111000000 00011111 23
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhh
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKK 150 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 150 (205)
+.+.+||++|+..... .+....+.+++|+|+++.... .. .+.. .. +.|+++|+||+|+....
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~-~~~~---~~--~~~~iiv~NK~Dl~~~~------- 170 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VE-KHPE---IF--RVADLIVINKVALAEAV------- 170 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HH-HCHH---HH--HTCSEEEEECGGGHHHH-------
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hh-hhhh---hh--hcCCEEEEecccCCcch-------
Confidence 5688999999521111 111256889999998765421 11 1111 12 58999999999986432
Q ss_pred hhccccccHHHHHHHHHHcC-CceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 151 AAEVDLVSTSQGKKMRRKIK-AAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
....++.....+..+ ..+++++||++|.|++++|+++.+.+...
T Consensus 171 -----~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 171 -----GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp -----TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred -----hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 233445555555443 34599999999999999999999887654
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.68 E-value=4e-18 Score=133.64 Aligned_cols=159 Identities=19% Similarity=0.137 Sum_probs=93.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC------cCc-----------------------ccc-------------
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDY------VPT-----------------------VFD------------- 58 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~------~~t-----------------------~~~------------- 58 (205)
....+|+|+|.+++|||||++++.+..+.+.. .|+ ...
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998874221 121 000
Q ss_pred -----cc---ceeEEEC-CEEEEEEEEEcCCCc-------------ccccccccCcCCC-cEEEEEEECCCcchHHHHHH
Q psy15714 59 -----NY---PDTITVD-NKTYDVTLWDTAGQE-------------DYERLRPMSYPNT-DCFLLCFSIGSTSSYENILS 115 (205)
Q Consensus 59 -----~~---~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~-~~~i~v~d~~~~~s~~~~~~ 115 (205)
.+ ...+.+. .....+.||||||.. .++.+...++... +++++|.|++....-.+..
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~- 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-
Confidence 00 0001111 112569999999953 2334444555555 4555566665432212221
Q ss_pred HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH--HHHHHcCCceEEEcccCCCCCHHHHHHHHH
Q psy15714 116 KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK--KMRRKIKAAEYLECSAKLNEGLDQVFIAAV 193 (205)
Q Consensus 116 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 193 (205)
.++..+.. .+.|+++|+||+|+...... ..+..+ .+....+..+++.+||+++.|++++++++.
T Consensus 188 ~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~------------~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~ 253 (353)
T 2x2e_A 188 KVAKEVDP--QGQRTIGVITKLDLMDEGTD------------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 253 (353)
T ss_dssp HHHHHHCT--TCTTEEEEEECGGGSCTTCC------------CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHH
T ss_pred HHHHHhCc--CCCceEEEeccccccCcchh------------HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHH
Confidence 23333333 37999999999999764310 000000 001112334478899999999999999887
Q ss_pred H
Q psy15714 194 R 194 (205)
Q Consensus 194 ~ 194 (205)
+
T Consensus 254 ~ 254 (353)
T 2x2e_A 254 A 254 (353)
T ss_dssp H
T ss_pred H
Confidence 6
No 193
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.66 E-value=2.7e-18 Score=126.38 Aligned_cols=155 Identities=18% Similarity=0.118 Sum_probs=92.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-------------eeEEEC-CEE----------------
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-------------DTITVD-NKT---------------- 70 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~~---------------- 70 (205)
.+..+|+++|.+|+|||||++++....+...+.+++...+. ..+.++ +..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35689999999999999999999987655444444433321 122221 111
Q ss_pred ---EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh
Q psy15714 71 ---YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID 147 (205)
Q Consensus 71 ---~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 147 (205)
..+.+.|++|.-.... .+-...+.++.+.|+........ ..... . +.|.++|+||+|+....
T Consensus 116 ~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~---~--~~~~iiv~NK~Dl~~~~---- 180 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGI---M--KTADLIVINKIDLADAV---- 180 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHH---H--TTCSEEEEECGGGHHHH----
T ss_pred cCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhH---h--hcCCEEEEeccccCchh----
Confidence 1344455555211111 11122344556666432211110 00111 1 57889999999986532
Q ss_pred hhhhhccccccHHHHHHHHHHcC-CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 148 KKKAAEVDLVSTSQGKKMRRKIK-AAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
....++...+++..+ ..+++++||++|.|++++|+++.+.+..
T Consensus 181 --------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 181 --------GADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp --------TCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 245566666666543 3459999999999999999999887754
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.64 E-value=1.5e-16 Score=124.64 Aligned_cols=107 Identities=21% Similarity=0.186 Sum_probs=69.5
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhh
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKK 150 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 150 (205)
+.+.||||||..... ...+..+|++++|+|.+.......+. ....+.|+++|+||+|+......
T Consensus 172 ~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~--------~~~~~~p~ivVlNK~Dl~~~~~~----- 235 (355)
T 3p32_A 172 FDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIK--------KGVLELADIVVVNKADGEHHKEA----- 235 (355)
T ss_dssp CCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCC--------TTSGGGCSEEEEECCCGGGHHHH-----
T ss_pred CCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHH--------HhHhhcCCEEEEECCCCcChhHH-----
Confidence 678999999943321 23458899999999987665443322 11125699999999998653211
Q ss_pred hhccccccHHHHHHHHHHcC------CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 151 AAEVDLVSTSQGKKMRRKIK------AAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
.....+......... ..+++++||++|+|+++++++|.+.+..
T Consensus 236 -----~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 236 -----RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp -----HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 011112222211121 2349999999999999999999887654
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.63 E-value=5.5e-16 Score=133.28 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=85.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC------C----------cCcccccc-ceeEE------------ECC
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTEN--KFPTD------Y----------VPTVFDNY-PDTIT------------VDN 68 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~------~----------~~t~~~~~-~~~~~------------~~~ 68 (205)
..+..+|+|+|+.++|||||+++++.. .+... + -.|+.... ..... .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 345679999999999999999999863 11110 0 00111111 01111 234
Q ss_pred EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc
Q psy15714 69 KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141 (205)
Q Consensus 69 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 141 (205)
..+.+.||||||+.+|...+..+++.+|++|+|+|+++..+++... .|.... .. ++|+++++||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~-~~--~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQAL-GE--RIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHH-HT--TCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH-Hc--CCCeEEEEECCCcch
Confidence 4788999999999999988888999999999999999998887754 454433 33 799999999999863
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.63 E-value=1.6e-15 Score=114.02 Aligned_cols=126 Identities=19% Similarity=0.087 Sum_probs=72.8
Q ss_pred EEEEEEEcCCCcccccccc------cCcCCCcEEEEEEECCCcchHHHHHHHHH---HHHhhhCCCCCEEEEeeCccccc
Q psy15714 71 YDVTLWDTAGQEDYERLRP------MSYPNTDCFLLCFSIGSTSSYENILSKWY---PELKHHCPKVPIILVGTKADLRS 141 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~ivv~nK~Dl~~ 141 (205)
+.+.|||+||......... ..+.. +++|+++|+....+.......+. ..... .+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence 5799999999876543321 13455 89999998765444333321111 11122 3789999999999876
Q ss_pred Cchhhhhhhhhcc-ccccHH-------------HHHHHHHHcCC-ceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 142 ENKTIDKKKAAEV-DLVSTS-------------QGKKMRRKIKA-AEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 142 ~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
........+.... ...... ....+++.++. .+++++||++++|++++++++.+.+...
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence 4321111111000 000000 00111234332 2589999999999999999998877543
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.62 E-value=4e-16 Score=128.43 Aligned_cols=119 Identities=19% Similarity=0.172 Sum_probs=80.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCC---CCCcCccccccceeEEE--------CCE-------------------
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFP---TDYVPTVFDNYPDTITV--------DNK------------------- 69 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~--------~~~------------------- 69 (205)
.....+|+|+|.+|+|||||+|++++..+. ....+++. . ...+.. +..
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~-~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD-C-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC-S-EEEEECCSSSEEECCC------------------CC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc-e-EEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 346789999999999999999999998763 12222220 0 000000 000
Q ss_pred ----E---------EEEEEEEcCCCcc-----------cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC
Q psy15714 70 ----T---------YDVTLWDTAGQED-----------YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC 125 (205)
Q Consensus 70 ----~---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 125 (205)
. ..+.+|||||... +......++..+|++++|+|+++........ .|+..+...
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~- 217 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS-EAIGALRGH- 217 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH-HHHHHTTTC-
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH-HHHHHHHhc-
Confidence 0 2589999999764 3344455678899999999998754444443 676666554
Q ss_pred CCCCEEEEeeCcccccCc
Q psy15714 126 PKVPIILVGTKADLRSEN 143 (205)
Q Consensus 126 ~~~p~ivv~nK~Dl~~~~ 143 (205)
+.|+++|+||+|+....
T Consensus 218 -~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 218 -EDKIRVVLNKADMVETQ 234 (550)
T ss_dssp -GGGEEEEEECGGGSCHH
T ss_pred -CCCEEEEEECCCccCHH
Confidence 78999999999997643
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=2.1e-14 Score=111.89 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=56.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCE---------------EEEEEEEEcCCCcccc-
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQEDYE- 85 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~- 85 (205)
.++|+++|.+|+|||||++++.+..+. .++..++.......+.+++. ...+++||+||..++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999987642 23333222222223444442 1579999999987653
Q ss_pred ---ccccc---CcCCCcEEEEEEECCC
Q psy15714 86 ---RLRPM---SYPNTDCFLLCFSIGS 106 (205)
Q Consensus 86 ---~~~~~---~~~~~~~~i~v~d~~~ 106 (205)
.+... .++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23332 3689999999999986
No 199
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.59 E-value=7.8e-15 Score=120.69 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=82.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc--C-----------C-----CCCCCcCcc---cccc-ce--eEEECCEEEEEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE--N-----------K-----FPTDYVPTV---FDNY-PD--TITVDNKTYDVTLW 76 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~--~-----------~-----~~~~~~~t~---~~~~-~~--~~~~~~~~~~~~i~ 76 (205)
.+.=+|+|+|+.++|||||..+++. + . +.+ +.+.. +... .. .+..++ +.++|+
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D-~~~~EreRGITI~s~~~~~~~~~--~~iNlI 105 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSD-WMAMERERGISVTTSVMQFPYRD--RVVNLL 105 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC---------------------CTTTEEEEEETT--EEEEEE
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccC-ChHHHHHCCCcEeeceEEEEECC--EEEEEE
Confidence 4556899999999999999988862 1 1 111 11111 1111 11 233444 678999
Q ss_pred EcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714 77 DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144 (205)
Q Consensus 77 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 144 (205)
|||||.+|..-..+.++.+|++|+|+|+.+.-..+... .| ....++ ++|.++++||+|....+.
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~-v~-~~a~~~--~lp~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LM-DVCRMR--ATPVMTFVNKMDREALHP 169 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH-HH-HHHHHT--TCCEEEEEECTTSCCCCH
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHH-HH-HHHHHh--CCceEEEEecccchhcch
Confidence 99999999888788899999999999999887766653 44 555566 899999999999876554
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.57 E-value=9.1e-16 Score=119.88 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=60.6
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhh
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKK 150 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 150 (205)
+.+.++|++|-.... ......+|++++|+|+++......+. . . + -..|.++|+||+|+......
T Consensus 167 ~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~-~--~-i----l~~~~ivVlNK~Dl~~~~~~----- 230 (349)
T 2www_A 167 YDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK-R--G-I----IEMADLVAVTKSDGDLIVPA----- 230 (349)
T ss_dssp CSEEEEECCCC--CH---HHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-----
T ss_pred CCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH-H--H-H----HhcCCEEEEeeecCCCchhH-----
Confidence 568899999953211 22457899999999998754322221 1 1 1 15688999999998642110
Q ss_pred hhccccccHHHHHHHHHH------cCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 151 AAEVDLVSTSQGKKMRRK------IKAAEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
.....+.....+. ....+++.+||++++|+++++++|.+.+
T Consensus 231 -----~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 231 -----RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp -----HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 0000111111110 1124589999999999999999998765
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.55 E-value=2.6e-15 Score=117.07 Aligned_cols=106 Identities=21% Similarity=0.293 Sum_probs=65.6
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhh
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKK 150 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 150 (205)
+.+.||||||....... ....+|++++|+|++....+..+. . ... +.|.++|+||+|+......
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~-----~-~~~--~~p~ivv~NK~Dl~~~~~~----- 212 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIK-----K-GLM--EVADLIVINKDDGDNHTNV----- 212 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCC-----H-HHH--HHCSEEEECCCCTTCHHHH-----
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHH-----H-hhh--cccCEEEEECCCCCChHHH-----
Confidence 57999999996544332 358999999999987653321111 0 111 5688999999998653210
Q ss_pred hhccccccHHHHHHHHHHcC------CceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 151 AAEVDLVSTSQGKKMRRKIK------AAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
....++.+......+ ..+++++||++|.|+++++++|.+.+.
T Consensus 213 -----~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 213 -----AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp -----HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 000112222222222 345899999999999999999988654
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.55 E-value=3.5e-14 Score=111.23 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=54.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCc-cccccceeEEECC-------------------EEEEEEEEEcCCCc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKF-PTDYVPT-VFDNYPDTITVDN-------------------KTYDVTLWDTAGQE 82 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t-~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~ 82 (205)
++|+++|.+|+|||||++++.+... ...+..+ ..... ....+.+ ....+.+||+||..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~-g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNV-GVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTE-EEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccce-eeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 5799999999999999999987642 1222222 22111 1122221 23579999999987
Q ss_pred cccc----ccc---cCcCCCcEEEEEEECCC
Q psy15714 83 DYER----LRP---MSYPNTDCFLLCFSIGS 106 (205)
Q Consensus 83 ~~~~----~~~---~~~~~~~~~i~v~d~~~ 106 (205)
.+.. +.. ..++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6432 211 24689999999999985
No 203
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.49 E-value=1.5e-13 Score=105.32 Aligned_cols=97 Identities=20% Similarity=0.119 Sum_probs=78.3
Q ss_pred CcccccccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhcccccc-
Q psy15714 81 QEDYERLRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVS- 158 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~- 158 (205)
++++..+.+.++.++|++++|+|++++. ++..+. .|+..+... ++|+++|+||+|+.+.. .+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~-~~l~~~~~~--~~~~ilV~NK~DL~~~~------------~v~~ 130 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLD-NMLVVYEYF--KVEPVIVFNKIDLLNEE------------EKKE 130 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHH-HHHHHHHHT--TCEEEEEECCGGGCCHH------------HHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHH-HHHHHHHhC--CCCEEEEEEcccCCCcc------------ccHH
Confidence 6778888888999999999999999886 787665 788877664 89999999999997542 222
Q ss_pred HHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHH
Q psy15714 159 TSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAV 193 (205)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 193 (205)
.++...+.+..+.. ++++||++|.|++++|..+.
T Consensus 131 ~~~~~~~~~~~g~~-~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 131 LERWISIYRDAGYD-VLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHHHHHHHTTCE-EEECCTTTCTTHHHHHHHTT
T ss_pred HHHHHHHHHHCCCe-EEEEECCCCCCHHHHHhhcc
Confidence 34556666667765 99999999999999998764
No 204
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.48 E-value=1.5e-14 Score=103.24 Aligned_cols=110 Identities=6% Similarity=-0.050 Sum_probs=70.2
Q ss_pred cCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHH---HHHHhhh--CCCCCEEEEeeCc-ccccCchhhhhhhh
Q psy15714 78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKW---YPELKHH--CPKVPIILVGTKA-DLRSENKTIDKKKA 151 (205)
Q Consensus 78 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~--~~~~p~ivv~nK~-Dl~~~~~~~~~~~~ 151 (205)
.+|+..++.+|+.|++++|++|||+|.+|++.++ ...++ ..++... ..++|++|++||. |+...-...+..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 4588999999999999999999999999986544 33344 4444433 2589999999995 77553222111111
Q ss_pred hccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 152 AEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+.. ......+.+..|||.+|+|+.+.++|+.+.+..+
T Consensus 188 L~L-----------~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 188 LHL-----------NLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp TTG-----------GGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred cCC-----------cCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 111 0111345589999999999999999999877544
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.48 E-value=3.3e-14 Score=119.12 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=80.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc--CCCCCC-----------CcCcc---cccc-ceeEEECCEEEEEEEEEcCCCcccccc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE--NKFPTD-----------YVPTV---FDNY-PDTITVDNKTYDVTLWDTAGQEDYERL 87 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~--~~~~~~-----------~~~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 87 (205)
+|+|+|+.++|||||..+++. +.+... +.+.. +... .....+....+.++|+|||||.+|..-
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 689999999999999988762 222110 00000 1111 111222233467899999999999888
Q ss_pred cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714 88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144 (205)
Q Consensus 88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 144 (205)
..+.++.+|++|+|+|+.+.-..+.. .......++ ++|.++++||+|....+.
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~--~v~~~a~~~--~lp~i~~INKmDr~~a~~ 136 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTR--ILFHALRKM--GIPTIFFINKIDQNGIDL 136 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHH--HHHHHHHHH--TCSCEECCEECCSSSCCS
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEeccccccCCH
Confidence 88889999999999999987655543 344555566 899999999999865543
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.47 E-value=5.6e-14 Score=118.54 Aligned_cols=160 Identities=18% Similarity=0.110 Sum_probs=96.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCcccc-----------------------------------------
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFD----------------------------------------- 58 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~----------------------------------------- 58 (205)
....+|+|+|.+++|||||++++.+..+.+ ....++..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 456799999999999999999999977622 11100000
Q ss_pred -----cc---ceeEEE-CCEEEEEEEEEcCCCcc-------------cccccccCc-CCCcEEEEEEECCCcchHHHHHH
Q psy15714 59 -----NY---PDTITV-DNKTYDVTLWDTAGQED-------------YERLRPMSY-PNTDCFLLCFSIGSTSSYENILS 115 (205)
Q Consensus 59 -----~~---~~~~~~-~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 115 (205)
.+ ...+.+ ......+.++||||-.. .......++ ..+|++++|+|+++.....+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l- 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-
Confidence 00 000100 00112478999999533 112222233 6789999999998754333332
Q ss_pred HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH--HHHHcCCceEEEcccCCCCCHHHHHHHHH
Q psy15714 116 KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK--MRRKIKAAEYLECSAKLNEGLDQVFIAAV 193 (205)
Q Consensus 116 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 193 (205)
.++..+... +.|+++|+||+|+..... ........ +....+..+++.+||++|.|++++++.+.
T Consensus 208 ~ll~~L~~~--g~pvIlVlNKiDlv~~~~------------~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~ 273 (772)
T 3zvr_A 208 KIAKEVDPQ--GQRTIGVITKLDLMDEGT------------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 273 (772)
T ss_dssp HHHHHHCTT--CSSEEEEEECTTSSCTTC------------CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEEeCcccCCcch------------hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHH
Confidence 345555544 799999999999976431 11110000 00012334578899999999999999888
Q ss_pred HH
Q psy15714 194 RS 195 (205)
Q Consensus 194 ~~ 195 (205)
+.
T Consensus 274 ~e 275 (772)
T 3zvr_A 274 AE 275 (772)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 207
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.6e-13 Score=106.34 Aligned_cols=118 Identities=18% Similarity=0.138 Sum_probs=81.4
Q ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccc----c---cc
Q psy15714 18 KSVHKALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER----L---RP 89 (205)
Q Consensus 18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~ 89 (205)
.......+|+++|.|++|||||+|++++... ..++..++.+.....+.+++ .++++.|+||-..-.. . .-
T Consensus 67 v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l 144 (376)
T 4a9a_A 67 VARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVI 144 (376)
T ss_dssp BCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHH
T ss_pred EeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHH
Confidence 3445667999999999999999999998654 34555565555556677888 4578889999532111 1 11
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccc
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLR 140 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~ 140 (205)
..++.+|++++|+|++++..-.. .+...+.... ...|.+++.||.|..
T Consensus 145 ~~i~~ad~il~vvD~~~p~~~~~---~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 145 AVARTCNLLFIILDVNKPLHHKQ---IIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHCSEEEEEEETTSHHHHHH---HHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHhcCccccccccCccHHHHH---HHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 24577999999999998743322 2223333332 578899999999964
No 208
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.41 E-value=2.4e-12 Score=109.15 Aligned_cols=119 Identities=17% Similarity=0.089 Sum_probs=79.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc--------CCCCCC--CcCcc------cccc-ceeEE--EC-----CEEEEEEEE
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE--------NKFPTD--YVPTV------FDNY-PDTIT--VD-----NKTYDVTLW 76 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~--------~~~~~~--~~~t~------~~~~-~~~~~--~~-----~~~~~~~i~ 76 (205)
.+-=+|+|+|+.++|||||..+++. +..... +.-+. +... ...+. .. ...+.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 3445799999999999999988762 121110 00000 0011 11111 11 135789999
Q ss_pred EcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 77 DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 77 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
|||||-+|..-....++-+|++|+|+|+...-..+... .+....+. ++|.++++||+|....+
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~--v~~~a~~~--~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET--VWRQANKY--GVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHH--TCCEEEEEECSSSTTCC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEccccccCcc
Confidence 99999999888778899999999999999886665543 34444555 89999999999986543
No 209
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.35 E-value=3.6e-13 Score=100.68 Aligned_cols=110 Identities=6% Similarity=-0.070 Sum_probs=74.4
Q ss_pred cCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHH---HHHHHhhh--CCCCCEEEEeeC-cccccCchhhhhhhh
Q psy15714 78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSK---WYPELKHH--CPKVPIILVGTK-ADLRSENKTIDKKKA 151 (205)
Q Consensus 78 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~~~--~~~~p~ivv~nK-~Dl~~~~~~~~~~~~ 151 (205)
.+|++..+.+|+.|++++|++|||+|++|++.++ ...+ +..++... ..++|++|++|| .|+...-...+..+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4688999999999999999999999999987544 2222 33444332 258999999996 688654322221111
Q ss_pred hccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714 152 AEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 199 (205)
+.. ......+.+..|||.+|+|+.+.++|+.+.+..+
T Consensus 273 L~L-----------~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHL-----------NLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTG-----------GGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCC-----------ccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 111 0011345589999999999999999999887544
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.34 E-value=1.7e-11 Score=95.30 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=62.2
Q ss_pred EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhh
Q psy15714 71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKK 150 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 150 (205)
+.+.++||+|...-.. .....+|++++++|+......+.+. .. +. ..|.++++||+|+....
T Consensus 148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~-~~---i~----~~~~ivvlNK~Dl~~~~------- 209 (337)
T 2qm8_A 148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIK-KG---IF----ELADMIAVNKADDGDGE------- 209 (337)
T ss_dssp CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CC-TT---HH----HHCSEEEEECCSTTCCH-------
T ss_pred CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHH-HH---Hh----ccccEEEEEchhccCch-------
Confidence 5689999999643221 2347899999999986443221111 11 11 24567788999975432
Q ss_pred hhccccccHHHHHHHHHHc---C------CceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714 151 AAEVDLVSTSQGKKMRRKI---K------AAEYLECSAKLNEGLDQVFIAAVRSAV 197 (205)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 197 (205)
.......+.+.... . ..+++.+||+++.|++++++.|.+...
T Consensus 210 -----~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 210 -----RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp -----HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11112222222211 1 234888999999999999999987653
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.21 E-value=7.1e-12 Score=98.64 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=51.1
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEECCE---------------EEEEEEEEcCCCc
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQE 82 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~ 82 (205)
.....++|+++|.+|+|||||++++.+..+.. .+..++.......+.+++. ...+++||+||..
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 34566899999999999999999999876532 2222222222223333331 2359999999987
Q ss_pred cccc-------ccccCcCCCcEEEEEEECCCcch
Q psy15714 83 DYER-------LRPMSYPNTDCFLLCFSIGSTSS 109 (205)
Q Consensus 83 ~~~~-------~~~~~~~~~~~~i~v~d~~~~~s 109 (205)
.+.+ .+...++.+|++++|+|+.+..+
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 6543 23345789999999999986443
No 212
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.12 E-value=1.2e-10 Score=91.59 Aligned_cols=102 Identities=17% Similarity=0.166 Sum_probs=75.6
Q ss_pred CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccH
Q psy15714 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVST 159 (205)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (205)
.++.|+.+.+.+.+.++++++|+|++++. ..|...+.++..+.|+++|+||+|+....... ....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~---------~~~~ 119 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKH---------DKVK 119 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCH---------HHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcccCH---------HHHH
Confidence 45788888888899999999999998853 25777777777789999999999997542100 0112
Q ss_pred HHHHHHHHHcCCc--eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 160 SQGKKMRRKIKAA--EYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
+..+..++..+.. +++++||++|+|++++++.+.+..
T Consensus 120 ~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 120 HWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 2333445666662 589999999999999999987643
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=4.5e-10 Score=88.32 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=74.3
Q ss_pred CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccH
Q psy15714 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVST 159 (205)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (205)
.++.|+.+...+++.++++++|+|+.++.+ .|...+.+...+.|+++|+||+|+....... ....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~~~---------~~~~ 121 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSVKY---------PKLL 121 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTCCH---------HHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCccCH---------HHHH
Confidence 478899988888899999999999999763 4555566656689999999999997642100 0112
Q ss_pred HHHHHHHHHcCC--ceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714 160 SQGKKMRRKIKA--AEYLECSAKLNEGLDQVFIAAVRSA 196 (205)
Q Consensus 160 ~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~ 196 (205)
+.....++..+. ..++.+||++|+|++++++.+.+..
T Consensus 122 ~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 122 RWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 233334556666 3589999999999999999987654
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=6e-09 Score=82.80 Aligned_cols=117 Identities=24% Similarity=0.286 Sum_probs=61.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCc--ccccc-ceeE--EECCEEEEEEEEEcCCCccc------------
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPT--VFDNY-PDTI--TVDNKTYDVTLWDTAGQEDY------------ 84 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t--~~~~~-~~~~--~~~~~~~~~~i~D~~g~~~~------------ 84 (205)
..++++|+|++|+|||||++.+.+..+....... ..... ...+ ...+....++++|++|-...
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 3456999999999999999999887543211110 11111 1111 11222346889999874321
Q ss_pred ------ccc-------cc--cCcCCCc---EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 85 ------ERL-------RP--MSYPNTD---CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 85 ------~~~-------~~--~~~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
... .+ .....++ +++|+.|....-+..++ .++..+. .++|+|+|.||+|.....
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccchH
Confidence 000 00 0122333 35556666544333332 3444443 589999999999987654
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.88 E-value=1.3e-08 Score=76.60 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=63.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCc------CccccccceeEEE--C--CEEEEEEEEEcCCCccc--------
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYV------PTVFDNYPDTITV--D--NKTYDVTLWDTAGQEDY-------- 84 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~------~t~~~~~~~~~~~--~--~~~~~~~i~D~~g~~~~-------- 84 (205)
.++++++|++|+|||||++.+.+-..+.... +.........+.+ . +....++++|++|-...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5899999999999999999988643221100 0000011111111 1 22236889999882110
Q ss_pred ----------cc----------ccccCcCCCcEEEEEEECC-CcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 85 ----------ER----------LRPMSYPNTDCFLLCFSIG-STSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 85 ----------~~----------~~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
.. ..+..+..+.+.+++.|.. ..-...+. ..+..+.. .+++++|.+|.|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~--~~l~~L~~---~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL--EFMKHLSK---VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH--HHHHHHHT---TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH--HHHHHHHh---cCcEEEEEeccccCCHH
Confidence 00 0112233467788888854 33222222 44455543 38999999999987654
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.88 E-value=2.9e-10 Score=89.35 Aligned_cols=139 Identities=13% Similarity=0.060 Sum_probs=77.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC------CCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccc----c---
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN------KFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERL----R--- 88 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~------~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~----~--- 88 (205)
..+++++|.+|+|||||+|++.+. .... ....++.. ...+.++. .+.++||||-...... .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~--~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT--SYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE--EECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceee--cCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999975 2211 11111111 12233332 2788999995322211 1
Q ss_pred -ccC--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714 89 -PMS--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 89 -~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (205)
..+ -...+.++++++.....-+..+ ..++.+.. .+.|+++++||.|..... -.......+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~l~~l~~--~~~~~~~v~~k~d~~~~~-------------~~~~~~~~~ 299 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGL--ARLDYIKG--GRRSFVCYMANELTVHRT-------------KLEKADSLY 299 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEE-------------EGGGHHHHH
T ss_pred HHHHhcccccCceEEEEcCCceEEECCE--EEEEEccC--CCceEEEEecCCcccccc-------------cHHHHHHHH
Confidence 111 2668899999987433111122 11222322 378999999999987643 222333444
Q ss_pred HHHcCCceEEEcccCCCCC
Q psy15714 166 RRKIKAAEYLECSAKLNEG 184 (205)
Q Consensus 166 ~~~~~~~~~~~~Sa~~~~~ 184 (205)
.+..+.. +...++....+
T Consensus 300 ~~~~g~~-l~p~~~~~~~~ 317 (369)
T 3ec1_A 300 ANQLGEL-LSPPSKRYAAE 317 (369)
T ss_dssp HHHBTTT-BCSSCGGGTTT
T ss_pred HHhcCCc-cCCCCchhhhh
Confidence 5555544 55555544443
No 217
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.86 E-value=4.4e-09 Score=82.93 Aligned_cols=88 Identities=19% Similarity=0.190 Sum_probs=58.8
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCE---------------EEEEEEEEcCCC
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQ 81 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~ 81 (205)
......+++++|++|+|||||++++.+... ..+++.++.......+.+.+. ...+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 344568999999999999999999998764 233333333333334555541 135899999995
Q ss_pred cccc-------cccccCcCCCcEEEEEEECCC
Q psy15714 82 EDYE-------RLRPMSYPNTDCFLLCFSIGS 106 (205)
Q Consensus 82 ~~~~-------~~~~~~~~~~~~~i~v~d~~~ 106 (205)
.... ..+...++.+|++++|+|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4321 122234578999999999864
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.85 E-value=8.2e-08 Score=76.22 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=86.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc-cccc--ceeEEECCEEEEEEEEEcCCCccc----ccc-cccCcC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNY--PDTITVDNKTYDVTLWDTAGQEDY----ERL-RPMSYP 93 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~-~~~~--~~~~~~~~~~~~~~i~D~~g~~~~----~~~-~~~~~~ 93 (205)
....++++|++|+|||||+|.+.+-..+....-+. +... ...+.-......+.+||++|-... ... ....+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 34589999999999999999998743211100000 0000 001111111124789999984321 111 111234
Q ss_pred CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc-CchhhhhhhhhccccccH----HHHHHHH--
Q psy15714 94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS-ENKTIDKKKAAEVDLVST----SQGKKMR-- 166 (205)
Q Consensus 94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~----~~~~~~~-- 166 (205)
..+..++ ++..... -..+ .+...+... +.|+++|.||.|+.- +.+.. ....... +..+.+.
T Consensus 148 ~~~~~~~-lS~G~~~-kqrv--~la~aL~~~--~~p~~lV~tkpdlllLDEPts------gLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 148 EYDFFII-ISATRFK-KNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADG------EPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp GCSEEEE-EESSCCC-HHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTT------CCTTCCHHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCcc-HHHH--HHHHHHHhc--CCCeEEEEecCcccccCcccc------cCCHHHHHHHHHHHHHHHHH
Confidence 4455555 7765322 1222 344444444 789999999999741 11100 0001122 2223332
Q ss_pred --HHcC--CceEEEccc--CCCCCHHHHHHHHHHHHHhh
Q psy15714 167 --RKIK--AAEYLECSA--KLNEGLDQVFIAAVRSAVKK 199 (205)
Q Consensus 167 --~~~~--~~~~~~~Sa--~~~~~i~~~~~~i~~~~~~~ 199 (205)
...+ ....+.+|+ ..++|++++.+.+.+.+...
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 1222 234788999 55667999999998776443
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.82 E-value=2.2e-10 Score=89.98 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=65.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-----CCcCcccccc-ceeEEECCEEEEEEEEEcCCCccccccc--------
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENKFPT-----DYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLR-------- 88 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~~~~-----~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------- 88 (205)
..+++++|.+|+|||||+|++.+..... ......++.. ...+.+++. +.++||||-.......
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 3589999999999999999998753111 0011111111 122333332 7899999953322110
Q ss_pred c--cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714 89 P--MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143 (205)
Q Consensus 89 ~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 143 (205)
. ......+.++|+++.....-...+ ..++.+.. .++|+++++||.|.....
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCccccccc
Confidence 0 114667888999887432211122 12222332 378999999999987653
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.80 E-value=8.4e-09 Score=78.10 Aligned_cols=102 Identities=19% Similarity=0.090 Sum_probs=67.1
Q ss_pred EEEcCCCc-ccccccccCcCCCcEEEEEEECCCcchHHH-HHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhh
Q psy15714 75 LWDTAGQE-DYERLRPMSYPNTDCFLLCFSIGSTSSYEN-ILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAA 152 (205)
Q Consensus 75 i~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 152 (205)
|-.+|||. .........+..+|+++.|+|+.++.+... ....| ..+.|.++|+||+|+.+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~-------l~~kp~ilVlNK~DL~~~~--------- 66 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI-------LKNKPRIMLLNKADKADAA--------- 66 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH-------CSSSCEEEEEECGGGSCHH---------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH-------HCCCCEEEEEECcccCCHH---------
Confidence 45789986 333444457899999999999999876542 11122 2589999999999997531
Q ss_pred ccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714 153 EVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198 (205)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 198 (205)
. .+....+.+..+.. ++.+||.++.|++++++.+.+.+..
T Consensus 67 ----~-~~~~~~~~~~~g~~-~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 67 ----V-TQQWKEHFENQGIR-SLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp ----H-HHHHHHHHHTTTCC-EEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHhcCCc-EEEEECCCcccHHHHHHHHHHHHHH
Confidence 1 11222333344554 8999999999999999988877653
No 221
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.80 E-value=3.8e-09 Score=85.86 Aligned_cols=151 Identities=18% Similarity=0.125 Sum_probs=84.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHh------cCCCC----CCCcCccc-------c--ccceeEEE---------------
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHT------ENKFP----TDYVPTVF-------D--NYPDTITV--------------- 66 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~------~~~~~----~~~~~t~~-------~--~~~~~~~~--------------- 66 (205)
.+...|+++|.+|+||||+++++. +.+.. +.+.+... . ... .+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~-v~~~~~~~dp~~i~~~al~ 177 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIP-FYGSYTEMDPVIIASEGVE 177 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCC-EEECCCCSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCce-EEccCCCCCHHHHHHHHHH
Confidence 345689999999999999998887 33210 11111100 0 000 0010
Q ss_pred --CCEEEEEEEEEcCCCccccc-ccc---cC--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCE-EEEeeCc
Q psy15714 67 --DNKTYDVTLWDTAGQEDYER-LRP---MS--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKA 137 (205)
Q Consensus 67 --~~~~~~~~i~D~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~ 137 (205)
....+.+.|+||||...... +.. .. +-.+|.+++|+|+........ ....+.. .+|+ ++|+||.
T Consensus 178 ~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~ 250 (504)
T 2j37_W 178 KFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKL 250 (504)
T ss_dssp HHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECT
T ss_pred HHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCC
Confidence 00235789999999753211 110 00 227899999999987643222 2223332 2675 8999999
Q ss_pred ccccCchhhhhhhhhccccccHHHHHHHHHHcC-----------------CceEEEcccCCCCC-HHHHHHHHHHH
Q psy15714 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK-----------------AAEYLECSAKLNEG-LDQVFIAAVRS 195 (205)
Q Consensus 138 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~~-i~~~~~~i~~~ 195 (205)
|....... +.......+ ..+.+.+|+..|.| ++++++++.+.
T Consensus 251 D~~~~~g~----------------~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGG----------------ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTH----------------HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHH----------------HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 98743210 111111111 11234579999999 99999988765
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.46 E-value=2.2e-07 Score=70.35 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=36.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~ 82 (205)
...++++++|.+|+|||||+|++.+...... .+..+... ...+..+. .+.+|||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 4568999999999999999999998763211 11111111 11233332 58899999963
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.44 E-value=1.2e-07 Score=70.91 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=35.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCCcc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQED 83 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~ 83 (205)
++++++|.+|+|||||+|++.+..... ..++.+.... ..+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 699999999999999999999876532 1222232221 2233222 589999999654
No 224
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.32 E-value=4.7e-07 Score=69.15 Aligned_cols=93 Identities=20% Similarity=0.149 Sum_probs=61.5
Q ss_pred cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714 86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165 (205)
Q Consensus 86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (205)
.+.+..+.++|.+++|+|+.++..-.+....++...... ++|.++|+||+||.+.... ....++....
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~~----------~~~~~~~~~~ 145 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQDT----------EDTIQAYAED 145 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHHH----------HHHHHHHHHH
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhhh----------HHHHHHHHHH
Confidence 334557899999999999987754334444555544444 8999999999999864210 0001222333
Q ss_pred HHHcCCceEEEcccCCCCCHHHHHHH
Q psy15714 166 RRKIKAAEYLECSAKLNEGLDQVFIA 191 (205)
Q Consensus 166 ~~~~~~~~~~~~Sa~~~~~i~~~~~~ 191 (205)
.+..+.. ++.+||.++.|+++++..
T Consensus 146 y~~~g~~-v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 146 YRNIGYD-VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp HHHHTCC-EEECCHHHHTTCTTTGGG
T ss_pred HHhCCCe-EEEEecCCCCCHHHHHhh
Confidence 3345665 899999999998877653
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.29 E-value=3.1e-06 Score=67.63 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=39.6
Q ss_pred EEEEEEEcCCCccccc-----cc-ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714 71 YDVTLWDTAGQEDYER-----LR-PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 142 (205)
+.+.|+||+|...... +. ......+|.+++|+|+.......+. ...+... --+..||+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGSAK 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSCSS
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCccc
Confidence 6688999999543211 10 0112357899999998865443222 2333322 2455799999998654
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.28 E-value=4.2e-07 Score=72.74 Aligned_cols=64 Identities=23% Similarity=0.130 Sum_probs=39.5
Q ss_pred EEEEEEEcCCCcccc-----cc-cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCC-C-EEEEeeCccccc
Q psy15714 71 YDVTLWDTAGQEDYE-----RL-RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV-P-IILVGTKADLRS 141 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~-----~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl~~ 141 (205)
+.+.|+|+||..... .+ ....+..+|.+++|+|+..... .. .. +..+...+ | ..+|+||.|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~-~~---~~~~~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AG-IQ---AKAFKEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HH-HH---HHHHHTTSCSCEEEEEECSSSCS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HH-HH---HHHHhhcccCCeEEEEeCCCCcc
Confidence 568899999965421 11 0122346899999999876532 22 12 22222346 6 889999999754
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.27 E-value=3.7e-07 Score=68.36 Aligned_cols=93 Identities=10% Similarity=-0.049 Sum_probs=59.3
Q ss_pred cCCCccc-ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhcccc
Q psy15714 78 TAGQEDY-ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDL 156 (205)
Q Consensus 78 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 156 (205)
+|||... .......+.++|+++.|+|+.++.+..... + . .. ++|.++|+||+|+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l-~----ll-~k~~iivlNK~DL~~~~------------- 62 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--V-D----FS-RKETIILLNKVDIADEK------------- 62 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--S-C----CT-TSEEEEEEECGGGSCHH-------------
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--H-H----hc-CCCcEEEEECccCCCHH-------------
Confidence 5777532 223345788999999999999886654321 1 1 12 89999999999997632
Q ss_pred ccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714 157 VSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194 (205)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 194 (205)
. .+....+.+..+.. + .+||.++.|+++++..+..
T Consensus 63 ~-~~~~~~~~~~~g~~-v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 63 T-TKKWVEFFKKQGKR-V-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp H-HHHHHHHHHHTTCC-E-EECCTTSCHHHHHHHHCCC
T ss_pred H-HHHHHHHHHHcCCe-E-EEECCCCcCHHHHHHHHHH
Confidence 1 11222333445665 6 9999999999999877643
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.23 E-value=1.6e-06 Score=71.80 Aligned_cols=63 Identities=24% Similarity=0.173 Sum_probs=39.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEE------CCEEEEEEEEEcCCCcc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITV------DNKTYDVTLWDTAGQED 83 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~~i~D~~g~~~ 83 (205)
.....+|+|+|.+++|||||+|++.+....-...++.... +..++. ......+.++||||-..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~-T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSH-TKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCC-CCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCc-eeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3466899999999999999999999876321222222111 111111 11224588899999654
No 229
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.12 E-value=7.6e-08 Score=78.02 Aligned_cols=109 Identities=14% Similarity=0.003 Sum_probs=62.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcc--ccccc--------c
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQED--YERLR--------P 89 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~ 89 (205)
...++|+++|.+|+||||+.+++....... ..++..... .......+......+||..|.+. .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999998887542111 111111110 00000111113356789888733 23322 3
Q ss_pred cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEe
Q psy15714 90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVG 134 (205)
Q Consensus 90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~ 134 (205)
.++....+.++|+|.++. +..... .|+..+... ..+++++-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~-~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRA-MIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHH-HHHHHHHHH--TCEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHH-HHHHHHHhc--CCcEEEEE
Confidence 455567888999999987 444444 777777665 44555444
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.01 E-value=5.5e-06 Score=69.20 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++|+|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998764
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.96 E-value=7.9e-06 Score=65.23 Aligned_cols=65 Identities=17% Similarity=0.156 Sum_probs=39.0
Q ss_pred EEEEEEEcCCCcc--ccc-----ccc-cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc
Q psy15714 71 YDVTLWDTAGQED--YER-----LRP-MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141 (205)
Q Consensus 71 ~~~~i~D~~g~~~--~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 141 (205)
+.+.|.|+||... ... +.. ...-..+.+++|+|+.......+ ....+... -.+..||+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~----~a~~f~~~--~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD----LASRFHQA--SPIGSVIITKMDGTA 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH----HHHHHHHH--CSSEEEEEECGGGCS
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH----HHHHHhcc--cCCcEEEEecccccc
Confidence 5678999999643 111 000 01224689999999876543322 22333333 346789999999764
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.90 E-value=9.3e-05 Score=57.62 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=56.2
Q ss_pred CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714 91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK 170 (205)
Q Consensus 91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
.+.++|.+++|... ++..-......++...... ++|.++|+||+||.+... ....++........+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~-----------~~~~~~~~~~y~~~G 192 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG-----------MDFVNEQMDIYRNIG 192 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH-----------HHHHHHHHHHHHTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh-----------HHHHHHHHHHHHhCC
Confidence 46889999988665 4543333333555555555 889999999999976421 000111222233456
Q ss_pred CceEEEcccCCCCCHHHHHHHH
Q psy15714 171 AAEYLECSAKLNEGLDQVFIAA 192 (205)
Q Consensus 171 ~~~~~~~Sa~~~~~i~~~~~~i 192 (205)
.. ++.+||.++.|++++...+
T Consensus 193 ~~-v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 193 YR-VLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CC-EEECBTTTTBTHHHHHHHH
T ss_pred Cc-EEEEecCCCcCHHHHHHhc
Confidence 65 8999999999999887643
No 233
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.89 E-value=1.2e-05 Score=61.19 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=52.5
Q ss_pred EEEEEEEcCCCcc--ccc-ccc-----cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCccccc
Q psy15714 71 YDVTLWDTAGQED--YER-LRP-----MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRS 141 (205)
Q Consensus 71 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 141 (205)
+.+.|+||||... ... +.. .....+|.+++|.|+..... .. .....+.. ..| ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~-~~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AY-DLASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HH-HHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HH-HHHHHHHh---hCCCCEEEEeCCCCCc
Confidence 5688999999765 211 111 12346899999999864322 22 12222322 466 779999999753
Q ss_pred CchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHH
Q psy15714 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQ 187 (205)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 187 (205)
.. ..+..+....+.+ +..++ .|+++++
T Consensus 254 ~~----------------g~~~~~~~~~~~p-i~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 KG----------------GGALSAVAATGAT-IKFIG--TGEKIDE 280 (297)
T ss_dssp TH----------------HHHHHHHHTTTCC-EEEEE--CSSSTTC
T ss_pred ch----------------HHHHHHHHHHCcC-EEEEe--CCCChhh
Confidence 21 2334555566655 55544 4666543
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.56 E-value=9.3e-05 Score=59.29 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=22.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
..+..-|.|+|++++|||||+|++++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 34667799999999999999999985
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.53 E-value=5.3e-05 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.+++++|++|+|||||++.+.+-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999877653
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=0.00012 Score=51.29 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999988763
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.28 E-value=0.00014 Score=51.83 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.++|+|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988875
No 238
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.27 E-value=0.00014 Score=50.67 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q psy15714 25 KVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~ 44 (205)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57999999999999999654
No 239
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.21 E-value=0.00018 Score=50.65 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q psy15714 26 VTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~ 45 (205)
++++|++|+|||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998875
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.20 E-value=0.00021 Score=50.30 Aligned_cols=23 Identities=13% Similarity=0.016 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
-.++++|++|+|||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999998775
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.20 E-value=0.0002 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
-++++|++|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999988764
No 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.17 E-value=0.00022 Score=51.16 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
-++++|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999988764
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.16 E-value=0.00023 Score=51.69 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
--++|+|++|+|||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999988764
No 244
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.12 E-value=0.00028 Score=48.48 Aligned_cols=24 Identities=29% Similarity=0.159 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
-.++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999888754
No 245
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.10 E-value=0.00028 Score=51.11 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++|+|++|+|||||++.+.+-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999988763
No 246
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.09 E-value=0.0003 Score=50.09 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
--|+|+|++|+|||||++++...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999998853
No 247
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.09 E-value=0.00033 Score=50.23 Aligned_cols=25 Identities=20% Similarity=0.057 Sum_probs=20.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.....|+|+|++|+|||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999977654
No 248
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.09 E-value=0.00029 Score=50.57 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
-|+++|++|+|||||++.+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999998865
No 249
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.09 E-value=0.0015 Score=52.28 Aligned_cols=64 Identities=25% Similarity=0.219 Sum_probs=38.2
Q ss_pred EEEEEEEcCCCccccc-ccc-----cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCE-EEEeeCccccc
Q psy15714 71 YDVTLWDTAGQEDYER-LRP-----MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKADLRS 141 (205)
Q Consensus 71 ~~~~i~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~ 141 (205)
+.+.|+||||...... +.. ..+...+.+++|+|+........ ....+.. .+++ -+|+||.|...
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~----~~~~f~~---~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN----TAKAFNE---ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH----HHHHHHH---HSCCCCEEEECTTSSS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH----HHHHHhc---cCCCeEEEEecCCCCc
Confidence 5688999999654321 111 12346889999999875533222 2222222 3553 47999999754
No 250
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.07 E-value=0.00033 Score=49.43 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy15714 26 VTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~ 46 (205)
|+|+||+|+|||||++++...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998753
No 251
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.06 E-value=0.00042 Score=48.14 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
..|++.|++|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999998886
No 252
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.05 E-value=0.00017 Score=54.95 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
-.++++|++|+|||||+|.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 378999999999999999998653
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.04 E-value=0.00033 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999877643
No 254
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.02 E-value=0.00037 Score=49.06 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.++++|++|+|||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999875
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.02 E-value=0.00038 Score=48.13 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
..|+++|++|+||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999887653
No 256
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.02 E-value=0.00056 Score=48.66 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=20.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.+...|++.|.+|+||||+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999988764
No 257
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.00 E-value=0.00045 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~ 44 (205)
...|+|+|++|+|||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999888
No 258
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.99 E-value=0.00042 Score=49.83 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
++|+|+|++||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988753
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.99 E-value=0.00045 Score=47.64 Aligned_cols=20 Identities=15% Similarity=-0.019 Sum_probs=18.4
Q ss_pred eEEEEECCCCCCHHHHHHHH
Q psy15714 24 LKVTTVGDGMVGKTCLLITH 43 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~ 43 (205)
+.|+++|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999988
No 260
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.99 E-value=0.00042 Score=49.53 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=20.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
...-|+++|++|||||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3346899999999999999988753
No 261
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.98 E-value=0.00047 Score=47.54 Aligned_cols=21 Identities=10% Similarity=0.034 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.|+++|++|+||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988764
No 262
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.98 E-value=0.00053 Score=48.79 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
....+.|+++|.+|+||||+.+.+..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44557899999999999999988764
No 263
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.97 E-value=0.00045 Score=49.71 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
++|+|+|++||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988854
No 264
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.97 E-value=0.00038 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999877643
No 265
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.97 E-value=0.00051 Score=50.56 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887653
No 266
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.96 E-value=0.00045 Score=49.18 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.-.|+++|++|+|||||++.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999988764
No 267
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.96 E-value=0.00044 Score=49.23 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
..|+++|++||||||+++.+.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 478999999999999999887653
No 268
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.95 E-value=0.00056 Score=48.05 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
+..+|+++|.+|+||||+.+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999877654
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.94 E-value=0.00051 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=20.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
....|+|+|+.|+|||||++.+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 335799999999999999987665
No 270
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.94 E-value=0.00048 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.289 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887643
No 271
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.94 E-value=0.00043 Score=48.99 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
+++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999987665
No 272
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.93 E-value=0.00048 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999887643
No 273
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.93 E-value=0.00053 Score=49.23 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
++|+++|+|||||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999877764
No 274
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.93 E-value=0.00048 Score=51.35 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999887643
No 275
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.0026 Score=49.20 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q psy15714 26 VTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~ 45 (205)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999987766
No 276
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.92 E-value=0.00055 Score=50.25 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 277
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.90 E-value=0.00073 Score=46.87 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
..|+++|++|+||||+.+.+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999987764
No 278
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.90 E-value=0.00059 Score=47.86 Aligned_cols=22 Identities=23% Similarity=0.066 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
..|++.|++||||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987754
No 279
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.90 E-value=0.00059 Score=50.26 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 280
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.90 E-value=0.00059 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|++|+|||||++.+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999998754
No 281
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.89 E-value=0.00061 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999887653
No 282
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.0007 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999987754
No 283
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.89 E-value=0.0006 Score=50.38 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999877653
No 284
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.89 E-value=0.00075 Score=47.22 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...|+++|.+||||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 285
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.89 E-value=0.0006 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999887653
No 286
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.89 E-value=0.0006 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999887653
No 287
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.88 E-value=0.00047 Score=48.13 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999877653
No 288
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.88 E-value=0.00069 Score=47.07 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
..|++.|++|+||||+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999888763
No 289
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.88 E-value=0.00063 Score=50.75 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999987764
No 290
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.88 E-value=0.0005 Score=49.44 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888754
No 291
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.87 E-value=0.00076 Score=49.65 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=21.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.+.++|+++|++||||||+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999988864
No 292
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.86 E-value=0.00067 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999877653
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.86 E-value=0.0007 Score=47.62 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...|+++|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 294
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.86 E-value=0.00061 Score=48.49 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
..|+++|.+|+||||+.+.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988764
No 295
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.85 E-value=0.0007 Score=48.13 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.-.|+++|++|+||||+.+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999987764
No 296
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.85 E-value=0.00067 Score=48.11 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999987765
No 297
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.85 E-value=0.00061 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.159 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...|+++|.+|+||||+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999988763
No 298
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.85 E-value=0.00081 Score=47.99 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999988765
No 299
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.85 E-value=0.00068 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999887643
No 300
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.84 E-value=0.0007 Score=50.30 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999887653
No 301
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.84 E-value=0.00069 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.176 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999887643
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.83 E-value=0.00073 Score=47.44 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.|+|.|.+|+||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999977764
No 303
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.83 E-value=0.00071 Score=50.38 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999988764
No 304
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.83 E-value=0.00064 Score=48.38 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
.+|+|+|.+|+||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999988876
No 305
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.82 E-value=0.00076 Score=49.91 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999988875
No 306
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.82 E-value=0.00077 Score=50.38 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988875
No 307
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.81 E-value=0.00076 Score=48.68 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.++|+++|.+|+||||+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999987764
No 308
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.81 E-value=0.00081 Score=49.70 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=21.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
..+.+.|+|.|.+|+||||+.+.+..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999987755
No 309
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.81 E-value=0.00067 Score=48.81 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
++|++.|.+|+||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999987764
No 310
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.80 E-value=0.00073 Score=49.53 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q psy15714 25 KVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~ 44 (205)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57999999999999998776
No 311
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.80 E-value=0.00071 Score=50.41 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
=.++|+|+.|+|||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999988765
No 312
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.80 E-value=0.00078 Score=50.49 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999877653
No 313
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.79 E-value=0.00076 Score=51.36 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
=.++|+|++|+|||||++.+.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3789999999999999987663
No 314
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.78 E-value=0.00081 Score=49.86 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999887653
No 315
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.78 E-value=0.00086 Score=48.94 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=20.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...+|+++|.+|+||||+.+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999987764
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.76 E-value=0.001 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
+.|+++|++|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 317
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.75 E-value=0.00087 Score=50.06 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6789999999999999987764
No 318
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.75 E-value=0.0012 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=18.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
+.--|+++|+|||||+|...++..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 333466799999999999877764
No 319
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.00091 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887654
No 320
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.75 E-value=0.00084 Score=47.74 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=20.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.....|+++|++|+||||+.+.+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999877654
No 321
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.73 E-value=0.00093 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.040 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
..++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 36899999999999999988764
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.72 E-value=0.00098 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
..|+++|++|+||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987764
No 323
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.71 E-value=0.0011 Score=45.61 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
++|++.|.+|+||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988765
No 324
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.70 E-value=0.0012 Score=46.28 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...|++.|.+|+||||+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999987764
No 325
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.70 E-value=0.0011 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.093 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...-|++.|++||||||+.+++..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 326
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.70 E-value=0.0013 Score=50.37 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=21.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.....-|+|+|++|+|||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34556899999999999999987765
No 327
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.69 E-value=0.00085 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.052 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
-++|+|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988643
No 328
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.69 E-value=0.00058 Score=49.74 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=15.3
Q ss_pred eEEEEECCCCCCHHHHHHHHh-cC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHT-EN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~-~~ 46 (205)
--++++|++|+|||||++.+. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999988 53
No 329
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.68 E-value=0.001 Score=48.00 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
++|+++|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999987754
No 330
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.68 E-value=0.00071 Score=47.19 Aligned_cols=23 Identities=30% Similarity=0.065 Sum_probs=16.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...|++.|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 331
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.67 E-value=0.0011 Score=46.26 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
..|+++|++|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988764
No 332
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.67 E-value=0.001 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...|+++|.+||||||+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999988763
No 333
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.66 E-value=0.0012 Score=46.80 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
...|++.|.+|+||||+.+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999888764
No 334
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.65 E-value=0.0011 Score=47.96 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
+.|++.|++||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999987764
No 335
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.65 E-value=0.00096 Score=50.75 Aligned_cols=24 Identities=29% Similarity=0.182 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
-.++++|++|+|||||++.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 367999999999999999998754
No 336
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.65 E-value=0.0013 Score=51.45 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.3
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHh
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~ 44 (205)
...+..||+++|.+|+|||||++++.
T Consensus 29 ~~~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 29 RSARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HhcCccEEEEECCCCCcHHHHHHHHH
Confidence 34568999999999999999997754
No 337
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.64 E-value=0.0016 Score=45.61 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=20.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
+...|+++|.+|+||||+.+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 446799999999999999987754
No 338
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.64 E-value=0.00082 Score=45.62 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|++|+|||||++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999887763
No 339
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.63 E-value=0.0011 Score=50.48 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q psy15714 24 LKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~ 44 (205)
-.++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 367999999999999999998
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.63 E-value=0.0015 Score=46.67 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
....|+|+|++|+||||+.+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999888764
No 341
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.63 E-value=0.00092 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.-+++|+|++|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999988764
No 342
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.62 E-value=0.0014 Score=48.19 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=21.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
......|+|+|+.|+|||||++.+.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999987765
No 343
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.62 E-value=0.001 Score=46.11 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
+|+++|++|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999987754
No 344
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.62 E-value=0.0011 Score=49.71 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy15714 26 VTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~ 46 (205)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999988763
No 345
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.60 E-value=0.0016 Score=49.92 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=21.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHh
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~ 44 (205)
....+-|+|+|++|+|||||++.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999997765
No 346
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.59 E-value=0.0014 Score=46.77 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=20.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
+...|++.|.+|+||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999987764
No 347
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.59 E-value=0.0012 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999988764
No 348
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.58 E-value=0.0013 Score=47.12 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
+...|++.|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988764
No 349
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.57 E-value=0.0012 Score=46.42 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...|+++|.+|+||||+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999987764
No 350
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.56 E-value=0.0016 Score=47.41 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=21.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
....-|+|.|+.|+||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34467999999999999999887764
No 351
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.56 E-value=0.0013 Score=48.45 Aligned_cols=21 Identities=38% Similarity=0.305 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy15714 26 VTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~ 46 (205)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988764
No 352
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.55 E-value=0.001 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
..|+|+|++|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987764
No 353
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.55 E-value=0.0015 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~ 44 (205)
...|+|+|++|+||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999998887
No 354
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.54 E-value=0.0014 Score=51.14 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|++|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999998887643
No 355
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.53 E-value=0.0015 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999877653
No 356
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.53 E-value=0.0016 Score=45.76 Aligned_cols=21 Identities=24% Similarity=0.045 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988765
No 357
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.52 E-value=0.0012 Score=48.89 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.....|+++|++|+||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999988764
No 358
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.52 E-value=0.0013 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57999999999999999887754
No 359
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.51 E-value=0.0017 Score=45.91 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=22.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.+...|+|.|.+||||||+.+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34568999999999999999888764
No 360
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.50 E-value=0.0014 Score=51.05 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.++|+|+.|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999988765
No 361
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.50 E-value=0.00096 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++|+|+.|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999877654
No 362
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.50 E-value=0.002 Score=48.71 Aligned_cols=24 Identities=21% Similarity=0.056 Sum_probs=20.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHh
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~ 44 (205)
.....|+|.|++|+|||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999986654
No 363
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.50 E-value=0.0015 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999887654
No 364
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.50 E-value=0.0017 Score=45.75 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988765
No 365
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.49 E-value=0.0013 Score=46.52 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...|+++|.+|+||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999987764
No 366
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.47 E-value=0.002 Score=47.86 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
..|+++|.+||||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999988764
No 367
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.46 E-value=0.0022 Score=45.63 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=20.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.....|+|+|++|+|||||++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999987764
No 368
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.46 E-value=0.0016 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 57899999999999999887643
No 369
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.45 E-value=0.0017 Score=50.66 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57999999999999999887653
No 370
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.44 E-value=0.0018 Score=48.01 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
-|+|+|++|+|||||.+++..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988763
No 371
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.44 E-value=0.0017 Score=49.47 Aligned_cols=21 Identities=33% Similarity=0.243 Sum_probs=18.8
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q psy15714 24 LKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~ 44 (205)
-.++++|++|+||||+++.+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 478999999999999998776
No 372
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.44 E-value=0.00076 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877654
No 373
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.43 E-value=0.0018 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 57999999999999999887654
No 374
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.43 E-value=0.0017 Score=49.37 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=20.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
..-.++++|++|+||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999977664
No 375
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.41 E-value=0.0021 Score=44.60 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
..+.++|.+|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988775
No 376
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.41 E-value=0.0019 Score=50.61 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|++|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999887643
No 377
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.41 E-value=0.0018 Score=50.69 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57999999999999999887654
No 378
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.39 E-value=0.0018 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999887753
No 379
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.38 E-value=0.002 Score=48.30 Aligned_cols=21 Identities=38% Similarity=0.305 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy15714 26 VTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~ 46 (205)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999988764
No 380
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.38 E-value=0.0023 Score=48.82 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
....|+|+|++|+|||||++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999987765
No 381
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.38 E-value=0.0026 Score=45.76 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.+.|+|.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988865
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.36 E-value=0.0028 Score=44.10 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999987765
No 383
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.35 E-value=0.0022 Score=44.13 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.|++.|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999987764
No 384
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.34 E-value=0.0021 Score=44.79 Aligned_cols=21 Identities=19% Similarity=-0.004 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999988764
No 385
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.33 E-value=0.0022 Score=46.31 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
-++++|++|+|||||++.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999988774
No 386
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.33 E-value=0.0019 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++|+|+.|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999888653
No 387
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.32 E-value=0.0023 Score=50.21 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
-.++|+|++|+|||||++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999988775
No 388
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.31 E-value=0.0033 Score=45.83 Aligned_cols=25 Identities=20% Similarity=0.103 Sum_probs=21.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
+...|++.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5568999999999999999877653
No 389
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.29 E-value=0.0024 Score=44.54 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.|+++|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999887764
No 390
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.29 E-value=0.002 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
-.++|+|+.|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37899999999999999988864
No 391
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.29 E-value=0.0031 Score=48.55 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=21.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.+.--++++|++|+||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999987764
No 392
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.28 E-value=0.0022 Score=51.02 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++|+|+.|+|||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999988764
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.28 E-value=0.00081 Score=48.13 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.|+|.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999987764
No 394
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.28 E-value=0.0027 Score=46.40 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=20.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.+.+.|++.|++|+||||+.+.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999987763
No 395
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.26 E-value=0.0025 Score=47.07 Aligned_cols=21 Identities=33% Similarity=0.229 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.+++.|++|+|||+|++.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 599999999999999988865
No 396
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.25 E-value=0.0016 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57999999999999999887653
No 397
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.24 E-value=0.0021 Score=44.58 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.-.+++.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999777653
No 398
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.21 E-value=0.003 Score=45.71 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999987764
No 399
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.19 E-value=0.0033 Score=42.55 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q psy15714 25 KVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~ 44 (205)
-.+|+|+.|+|||||+.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35899999999999998765
No 400
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.19 E-value=0.0029 Score=44.81 Aligned_cols=23 Identities=30% Similarity=0.219 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
-.+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999877653
No 401
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0028 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=20.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
..-.++++|++|+||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 445789999999999999977664
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.18 E-value=0.0033 Score=47.30 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=21.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
....+.|+|.|.+||||||+.+.+..
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988763
No 403
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.18 E-value=0.0036 Score=43.00 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=19.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
-.|++.|.+||||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999987754
No 404
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.16 E-value=0.003 Score=49.82 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5799999999999999988763
No 405
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.14 E-value=0.0027 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++|+|++|||||||++.+.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 49999999999999999988644
No 406
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.12 E-value=0.0022 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.102 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
-++|+|+.|+|||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 56899999999999999998653
No 407
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.12 E-value=0.0042 Score=44.45 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=20.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
......|+++|.+|+||||+.+.+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34456789999999999999977654
No 408
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.12 E-value=0.004 Score=47.08 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
..|+++|.+|+||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988875
No 409
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.11 E-value=0.0032 Score=51.05 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=20.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...-.++|+|++|+|||||++.+.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3445789999999999999977663
No 410
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0024 Score=51.47 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
-+++|+|+.|+|||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 37899999999999999887753
No 411
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.09 E-value=0.0015 Score=50.76 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999887654
No 412
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.08 E-value=0.0036 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5799999999999999988874
No 413
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.08 E-value=0.003 Score=47.71 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
-++|+|++|+|||||++.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 579999999999999977664
No 414
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.08 E-value=0.0034 Score=48.74 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
=+++++|++|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999888764
No 415
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.06 E-value=0.0037 Score=44.78 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999988876
No 416
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.05 E-value=0.0041 Score=41.77 Aligned_cols=25 Identities=12% Similarity=-0.072 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
...|++.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999998876543
No 417
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.04 E-value=0.0032 Score=46.52 Aligned_cols=23 Identities=22% Similarity=0.031 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.-.|+++|++|+||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999987754
No 418
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.00 E-value=0.004 Score=44.91 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999987764
No 419
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.98 E-value=0.0044 Score=51.01 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999888743
No 420
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.97 E-value=0.0034 Score=44.85 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999877654
No 421
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.95 E-value=0.0044 Score=44.07 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999987765
No 422
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.94 E-value=0.0042 Score=46.47 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.-.+++.|++|+|||+|++++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999988654
No 423
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.94 E-value=0.0045 Score=45.61 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
-.+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999988765
No 424
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.93 E-value=0.0042 Score=46.81 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.-.+++.|++|+|||+|++++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999999988763
No 425
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.92 E-value=0.0044 Score=48.64 Aligned_cols=23 Identities=26% Similarity=-0.002 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999988775
No 426
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.89 E-value=0.0036 Score=46.48 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=21.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.+...|+|.|..|+||||+++.+...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45578999999999999999776653
No 427
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.86 E-value=0.0057 Score=44.60 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=21.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
......|+++|.+|+||||+.+.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999987764
No 428
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.84 E-value=0.0065 Score=42.98 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=22.2
Q ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 19 SVHKALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 19 ~~~~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.....+.|.++|.+||||||+.+.|...
T Consensus 8 ~~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 8 HHHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHHh
Confidence 3455688999999999999999877653
No 429
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.84 E-value=0.0048 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
-++++|+.|+|||||++.+.+-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999888743
No 430
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.82 E-value=0.0053 Score=47.99 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHh
Q psy15714 26 VTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~ 44 (205)
++|+|+.|+|||||++++.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999998866
No 431
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.82 E-value=0.005 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
-.+++.|++|+|||+|++++...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 36899999999999999888764
No 432
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.80 E-value=0.0062 Score=44.35 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=19.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 20 VHKALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 20 ~~~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
....+++.++|+|||||||+..++..
T Consensus 5 ~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 5 HHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccceeeECCCCCCHHHHHHHHHH
Confidence 34567999999999999999987754
No 433
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.80 E-value=0.0052 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
=.++|+|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3679999999999999988774
No 434
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.78 E-value=0.0078 Score=47.88 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=21.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
....-|+++|++|+||||+.+++...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34457899999999999999998753
No 435
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.78 E-value=0.005 Score=46.57 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
..-+++.|+||+|||+|++++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346778899999999999877653
No 436
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.77 E-value=0.0054 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999987765
No 437
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.0059 Score=50.97 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999888643
No 438
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.70 E-value=0.007 Score=45.79 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=19.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999975543
No 439
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.69 E-value=0.006 Score=48.86 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999998888764
No 440
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.67 E-value=0.0067 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999887643
No 441
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.66 E-value=0.007 Score=49.79 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++|+|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988743
No 442
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.65 E-value=0.0059 Score=45.69 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 579999999999999977664
No 443
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.64 E-value=0.0061 Score=50.64 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
+++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999987764
No 444
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.62 E-value=0.0074 Score=50.38 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999888743
No 445
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.61 E-value=0.01 Score=44.16 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=21.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.....+++.|++|+|||+|++++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999887764
No 446
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.60 E-value=0.0071 Score=45.63 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999987765
No 447
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.60 E-value=0.0071 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999987764
No 448
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.59 E-value=0.0063 Score=47.28 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988775
No 449
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.56 E-value=0.0078 Score=49.51 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~ 47 (205)
.++++|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999888643
No 450
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.56 E-value=0.0072 Score=46.58 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999887764
No 451
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.54 E-value=0.004 Score=41.73 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999766543
No 452
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.53 E-value=0.0088 Score=42.65 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q psy15714 25 KVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~ 44 (205)
-.+|+|+.|+|||||+.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45889999999999997754
No 453
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.53 E-value=0.0076 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.228 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999887754
No 454
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.53 E-value=0.0075 Score=43.91 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q psy15714 25 KVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~ 44 (205)
-++++|++|+|||||+..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999976654
No 455
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.52 E-value=0.038 Score=44.28 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=19.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHh
Q psy15714 21 HKALKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 21 ~~~~ki~v~G~~~~GKstli~~~~ 44 (205)
....=|.|+|+.++|||+|+|.++
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 345566799999999999999554
No 456
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.51 E-value=0.0071 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=18.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~ 44 (205)
.-.++++|++|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999986654
No 457
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.49 E-value=0.0096 Score=42.17 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.|.|.|.+|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999987764
No 458
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.47 E-value=0.0093 Score=42.39 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
...|+|+|++|+|||+|...+...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999998887643
No 459
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.46 E-value=0.0082 Score=46.01 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
--|++.|++|+|||+|++++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999888764
No 460
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.45 E-value=0.0096 Score=52.20 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTENKF 48 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~~~ 48 (205)
.++++|+.|+|||||++.+.++.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999987654
No 461
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.45 E-value=0.0065 Score=50.62 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999987764
No 462
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.44 E-value=0.009 Score=45.51 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=18.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~ 44 (205)
.--|+++|++|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3468999999999999987665
No 463
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.42 E-value=0.013 Score=44.35 Aligned_cols=23 Identities=30% Similarity=0.154 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999877653
No 464
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.40 E-value=0.0073 Score=50.35 Aligned_cols=22 Identities=32% Similarity=0.255 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7899999999999999877654
No 465
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.0093 Score=47.54 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
-|++.|+||+|||+|++++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 466
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.38 E-value=0.011 Score=43.21 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
..|++.|..|+||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999887653
No 467
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.38 E-value=0.009 Score=45.72 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.-.+++.|++|+|||+|++++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999888653
No 468
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.37 E-value=0.11 Score=39.56 Aligned_cols=45 Identities=9% Similarity=-0.002 Sum_probs=26.0
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714 96 DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR 140 (205)
Q Consensus 96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 140 (205)
..-++++|=-+.-+-......++..++....++++|+..|..+..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 455555554443331222335666666655678888888877643
No 469
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.34 E-value=0.0089 Score=42.85 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.+.|++.|.+|+||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999987765
No 470
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.34 E-value=0.0096 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999877653
No 471
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.33 E-value=0.014 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=18.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~ 44 (205)
..+|+++|++|+||||+.+.+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 3589999999999999986554
No 472
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.011 Score=49.31 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q psy15714 26 VTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~~ 47 (205)
++++|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999888754
No 473
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.29 E-value=0.0091 Score=46.34 Aligned_cols=24 Identities=25% Similarity=0.033 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
--+.|+|++|+|||||++.+....
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367999999999999998887653
No 474
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.29 E-value=0.0063 Score=50.55 Aligned_cols=21 Identities=29% Similarity=0.229 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.++++|+.|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999976554
No 475
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.011 Score=47.30 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.--|++.|+||+|||+|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999988764
No 476
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.27 E-value=0.0046 Score=45.88 Aligned_cols=21 Identities=33% Similarity=0.221 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
-+++.|++|+|||+|++++..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 389999999999999988775
No 477
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.27 E-value=0.014 Score=44.74 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
..|+|+|++|+|||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999877764
No 478
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.24 E-value=0.009 Score=46.47 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=20.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
..-.+++.|++|+|||+|++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 344789999999999999987764
No 479
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.011 Score=47.16 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.--|++.|+||+|||+|++++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999988753
No 480
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.20 E-value=0.0098 Score=43.26 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=17.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
+..-|++.|++|+||||+++.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999977653
No 481
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.19 E-value=0.01 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
-.+++.|++|+|||+|++++...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999887643
No 482
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.17 E-value=0.0085 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q psy15714 25 KVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~~ 46 (205)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999876653
No 483
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.13 E-value=0.013 Score=43.42 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTENK 47 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~~ 47 (205)
..+++.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 568999999999999998887643
No 484
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.11 E-value=0.012 Score=45.68 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
-.|++.|++|+|||+|++++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999887753
No 485
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.10 E-value=0.013 Score=44.90 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
--++|.|++|+|||||++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 36899999999999999888754
No 486
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.10 E-value=0.012 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
..+++.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999888654
No 487
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.09 E-value=0.017 Score=41.49 Aligned_cols=24 Identities=29% Similarity=0.112 Sum_probs=20.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714 22 KALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 22 ~~~ki~v~G~~~~GKstli~~~~~ 45 (205)
+..-|++.|.+|+||||+++.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 446789999999999999977653
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.08 E-value=0.015 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~ 45 (205)
.-.+++.|++|+|||+|+.++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999977654
No 489
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.06 E-value=0.013 Score=47.05 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
--+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987765
No 490
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.05 E-value=0.014 Score=40.78 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy15714 26 VTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~ 46 (205)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999988754
No 491
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.02 E-value=0.013 Score=47.72 Aligned_cols=21 Identities=38% Similarity=0.305 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy15714 26 VTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~~~ 46 (205)
++++|++|+|||+|++.+.+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999988764
No 492
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.014 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~~ 46 (205)
--|++.|+||+|||.|++++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 35899999999999999988753
No 493
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.02 E-value=0.015 Score=44.95 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHh
Q psy15714 26 VTTVGDGMVGKTCLLITHT 44 (205)
Q Consensus 26 i~v~G~~~~GKstli~~~~ 44 (205)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3799999999999998864
No 494
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.01 E-value=0.013 Score=48.29 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
.++++|++|+|||||++.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999987764
No 495
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.01 E-value=0.014 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q psy15714 25 KVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 25 ki~v~G~~~~GKstli~~~~~ 45 (205)
-++++|++|+|||+|++++.+
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999988876
No 496
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.00 E-value=0.014 Score=45.40 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
.-.+++.|++|+|||+|++++...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999888653
No 497
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.99 E-value=0.014 Score=44.96 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
.-|+|+|++|||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999877664
No 498
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.98 E-value=0.02 Score=44.05 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
.-|+|+|+.|+|||+|...+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987775
No 499
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.97 E-value=0.013 Score=45.66 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q psy15714 24 LKVTTVGDGMVGKTCLLITHTE 45 (205)
Q Consensus 24 ~ki~v~G~~~~GKstli~~~~~ 45 (205)
-.+++.|++|+|||+|++.+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999987765
No 500
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.96 E-value=0.015 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714 23 ALKVTTVGDGMVGKTCLLITHTEN 46 (205)
Q Consensus 23 ~~ki~v~G~~~~GKstli~~~~~~ 46 (205)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999887653
Done!