RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15714
(205 letters)
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 285 bits (731), Expect = 4e-99
Identities = 93/201 (46%), Positives = 130/201 (64%), Gaps = 16/201 (7%)
Query: 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLW 76
SV K +K TVGDG VGKTC+LI +T NKFPTDY+PTVFDN+ + VD + ++ LW
Sbjct: 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLW 62
Query: 77 DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
DTAGQEDY RLRP+SY D F+L FS+ S +SYEN+L KW PEL+ P VPI+LVGTK
Sbjct: 63 DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTK 122
Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
DLR + + ++++++QG+++R++I AA Y+ECS+K + + VF A++
Sbjct: 123 LDLRDDKGYLADHT----NVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178
Query: 197 V------------KKQDKSCC 205
+ K +S C
Sbjct: 179 LQPPRRKEVPRRRKNHRRSGC 199
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 282 bits (722), Expect = 7e-98
Identities = 77/188 (40%), Positives = 119/188 (63%)
Query: 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL 75
++ +++KV VGDG GKT LL+ + FP Y PTVF+ Y + V K + +
Sbjct: 27 EAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHI 86
Query: 76 WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGT 135
WDTAGQ+DY+RLRP+ YP+ LLCF + S +S++NI ++WYPE+ H C KVPII+VG
Sbjct: 87 WDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGC 146
Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
K DLR + ++K + ++ V+ +G++M R + A YLECSA+L++ + VF A
Sbjct: 147 KTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEV 206
Query: 196 AVKKQDKS 203
A+ + ++
Sbjct: 207 ALSSRGRN 214
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 280 bits (717), Expect = 3e-97
Identities = 81/181 (44%), Positives = 122/181 (67%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ +K VGDG VGKT L++++T N +PT+Y+PT FDN+ ++VD + + L DTAGQ
Sbjct: 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ 78
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
+++++LRP+ Y NTD FLLCFS+ S SS++N+ KW PE++ HCPK PIILVGT++DLR
Sbjct: 79 DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ K + + + V K + +IKAA Y+ECSA + L +VF AA+ + ++ D
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198
Query: 202 K 202
Sbjct: 199 T 199
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 278 bits (712), Expect = 1e-96
Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 10/187 (5%)
Query: 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL 75
K ++ KALK+ VGDG VGKTCLL+ ++ + PT YVPTVF+N+ + N+ + + L
Sbjct: 16 KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHL 75
Query: 76 WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGT 135
WDTAGQE+Y+RLRP+SY ++D LLCF++ + +S++NI +KW PE+KH+ +LVG
Sbjct: 76 WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGL 135
Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
K DLR + V+ +G + +K+ Y+E S+ GL++VF +V
Sbjct: 136 KVDLRKDGSDD----------VTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 185
Query: 196 AVKKQDK 202
+
Sbjct: 186 IFSNKPV 192
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 277 bits (711), Expect = 2e-96
Identities = 95/180 (52%), Positives = 123/180 (68%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ VGDG GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQED
Sbjct: 26 KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
Y+RLRP+SYP+TD L+CFS+ S S ENI KW PE+KH CP VPIILV K DLRS+
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145
Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKS 203
+ + + V T G+ M +I+A +YLECSAK EG+ +VF A R+A++K+ S
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGS 205
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 276 bits (707), Expect = 5e-96
Identities = 94/182 (51%), Positives = 125/182 (68%), Gaps = 2/182 (1%)
Query: 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLW 76
S S + +K TVGDG VGKTCLLI++T N FPTDYVPTVFDN+ + V+ T ++ LW
Sbjct: 2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLW 61
Query: 77 DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
DTAGQEDY RLRP+SY D F+L FS+ S +SYEN+ KW PELKH+ P VPI+LVGTK
Sbjct: 62 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTK 121
Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
DLR + + A ++T QG+++++ I A Y+ECS+K E + VF AA+R
Sbjct: 122 LDLRDDKQFFIDHPGAV--PITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179
Query: 197 VK 198
++
Sbjct: 180 LQ 181
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 275 bits (705), Expect = 2e-95
Identities = 93/175 (53%), Positives = 119/175 (68%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ VGDG GKTCLLI ++++FP YVPTVF+NY I VD K ++ LWDTAGQED
Sbjct: 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
Y+RLRP+SYP+TD L+CFSI S S ENI KW PE+KH CP VPIILVG K DLR +
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145
Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
T + + + V + +G+ M +I A YLECSAK EG+ +VF A R+ ++
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 275 bits (704), Expect = 2e-95
Identities = 98/176 (55%), Positives = 129/176 (73%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 273 bits (699), Expect = 2e-94
Identities = 68/177 (38%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ VGD GKT LL ++ FP +YVPTVF+NY + +D + +++LWDT+G
Sbjct: 29 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
Y+ +RP+SYP++D L+CF I + +++L KW E++ CP ++LVG K+DLR++
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148
Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE-GLDQVFIAAVRSAVKK 199
T+ + VS QG M ++I AA Y+ECSA +E + +F A + V K
Sbjct: 149 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 205
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 269 bits (689), Expect = 3e-93
Identities = 68/177 (38%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ VGD GKT LL ++ FP +YVPTVF+NY + +D + +++LWDT+G
Sbjct: 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
Y+ +RP+SYP++D L+CF I + +++L KW E++ CP ++LVG K+DLR++
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE-GLDQVFIAAVRSAVKK 199
T+ + VS QG M ++I AA Y+ECSA +E + +F A + V K
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 184
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 266 bits (681), Expect = 6e-92
Identities = 83/175 (47%), Positives = 121/175 (69%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
LK VGDG VGKTCLL+++ + FP +YVPTVFD+Y ++TV K Y + L+DTAGQED
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
Y+RLRP+SYP TD FL+CFS+ + +S++N+ +W PELK + P VP +L+GT+ DLR +
Sbjct: 79 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 138
Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
KT+ + + + QG+K+ ++I A Y+ECSA +GL VF A+ + +
Sbjct: 139 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 260 bits (667), Expect = 7e-90
Identities = 97/181 (53%), Positives = 128/181 (70%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+A+K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LWDTAGQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
EDY+RLRP+SYP TD L+CFS+ S +S+EN+ +KWYPE++HHCP PIILVGTK DLR
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+ +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183
Query: 202 K 202
Sbjct: 184 V 184
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 252 bits (644), Expect = 5e-86
Identities = 60/193 (31%), Positives = 101/193 (52%), Gaps = 5/193 (2%)
Query: 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLW 76
+ V K+ VGD GKT +L ++ +P YVPTVF+NY + + + +++LW
Sbjct: 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLW 80
Query: 77 DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
DT+G Y+ +RP+ Y ++D LLCF I + ++ L KW E+ +CP ++L+G K
Sbjct: 81 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCK 140
Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE-GLDQVFIAAVRS 195
DLR++ T+ + + +S QG + +++ A YLE SA +E + +F A
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200
Query: 196 AV----KKQDKSC 204
+ KS
Sbjct: 201 CLNKPSPLPQKSP 213
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 249 bits (638), Expect = 2e-83
Identities = 94/183 (51%), Positives = 128/183 (69%)
Query: 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLW 76
++ + +K VGDG VGKTCLLI++T N FP +Y+PTVFDNY + VD K ++ LW
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 208
Query: 77 DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
DTAG EDY+RLRP+SYP TD FL+CFS+ S +S+ ++ +KWYPE++HHCP PIILVGTK
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTK 268
Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
DLR + TI+K K ++ ++ QG M ++I A +YLECSA GL VF A+R+
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328
Query: 197 VKK 199
+
Sbjct: 329 LCP 331
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 152 bits (387), Expect = 4e-47
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 21/207 (10%)
Query: 6 QTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTIT 65
++ + + + + KV +G VGKT L E +F Y PTV + Y +T
Sbjct: 7 HSSGRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVT 66
Query: 66 VDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--H 123
+ + + L DTAGQ++Y L ++L +S+ S S++ I Y +L H
Sbjct: 67 LGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGH 125
Query: 124 HCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183
+VP++LVG KADL E + V +GKK+ A ++E SA+ N+
Sbjct: 126 GKTRVPVVLVGNKADLSPERE------------VQAVEGKKLAESWGAT-FMESSARENQ 172
Query: 184 GLDQVFIAAVR-----SAVKKQDKSCC 205
+F ++ Q++ C
Sbjct: 173 LTQGIFTKVIQEIARVENSYGQERRCH 199
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 151 bits (384), Expect = 7e-47
Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 19/181 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
LKV VG+ GK+ L+ + + + P + I VD ++Y + + D G +
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPE 79
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRS 141
+ D + FS+ S++ + ++ L +VP++LVGT+ + +
Sbjct: 80 LQFAA-----WVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
N + + S+ +K+ +K Y E A +++VF + V +
Sbjct: 134 ANPRV----------IDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK 183
Query: 202 K 202
K
Sbjct: 184 K 184
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 150 bits (382), Expect = 1e-46
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 16/189 (8%)
Query: 17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLW 76
+ K+ VG G VGK+ L I ++ F +DY PT+ D+Y +VD + +
Sbjct: 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDIL 62
Query: 77 DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVG 134
DTAGQE++ +R FLL F+I S+ + K + ++ P++LVG
Sbjct: 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVG 121
Query: 135 TKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
KADL S+ + V S+ A Y E SAKL +D+ F VR
Sbjct: 122 NKADLESQRQ------------VPRSEASAFGASHHVA-YFEASAKLRLNVDEAFEQLVR 168
Query: 195 SAVKKQDKS 203
+ K Q++
Sbjct: 169 AVRKYQEQE 177
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 150 bits (381), Expect = 2e-46
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
K+ K+ +G VGK+ L I E +F Y PT+ + + ITV+ + Y + L DTAGQ
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADL 139
++Y + + ++L +S+ S S+E I + +L ++PI+LVG K DL
Sbjct: 65 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDL 123
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
E +S +GK + AA +LE SAK N+ VF + A K
Sbjct: 124 HMERV------------ISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEAEKM 170
Query: 200 QDKS 203
Sbjct: 171 DGAC 174
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 148 bits (376), Expect = 8e-46
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 17/179 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
+V G G VGK+ L++ + F Y+PTV D Y I+ D + + DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 64
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL---KHHCPKVPIILVGTKADLRS 141
++ +S F+L +SI S S E + Y ++ K +PI+LVG K D
Sbjct: 65 PAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESP 123
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+ V +S+ + + R K A ++E SAKLN + ++F + ++
Sbjct: 124 SRE------------VQSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLEKRRT 169
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 148 bits (375), Expect = 9e-46
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV +G G VGK+ L + F Y PT+ D Y I VD+ + + DTAG E +
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRSE 142
+R + N F+L +S+ + S+++I ++ KVP+ILVG K DL SE
Sbjct: 65 ASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESE 123
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ VS+S+G+ + + ++E SAK +D++F VR
Sbjct: 124 RE------------VSSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 147 bits (373), Expect = 2e-45
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VG G VGK+ L I +N F + PT+ D+Y + +D +T + + DTAGQE+Y
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSE 142
+R + FL F+I +T S+E+I ++ ++K VP++LVG K+DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL--A 121
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+T V + Q + + R Y+E SAK +G++ F VR +++
Sbjct: 122 ART-----------VESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVR-EIRQH 166
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 147 bits (373), Expect = 2e-45
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 15/172 (8%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ +G G VGK+ L + + F Y PT+ D+Y + VD + + + DTAG E +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRSE 142
+R + N F L +SI + S++ ++ ++ VP+ILVG K DL E
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
V QG+ + R+ +LE SAK ++++F VR
Sbjct: 124 RV------------VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 147 bits (373), Expect = 3e-45
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV VG G VGK+ L + ++F DY PT D+Y + +D + + + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRSE 142
+R + + + FL FSI S+ + + ++ VP +LVG K+DL +
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
+ VS + K + Y+E SAK +D+VF +R ++ +
Sbjct: 139 RQ------------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFFDLMREIRARKME 185
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 146 bits (372), Expect = 5e-45
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 17/180 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VG G VGK+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQE+Y
Sbjct: 23 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 82
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSE 142
+R + FL F+I ++ S+ +I + + ++K VP++LVG K DL
Sbjct: 83 SAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDL--P 139
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
+T V T Q ++ + ++E SAK +G++ F VR + + K
Sbjct: 140 TRT-----------VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAFYTLVREIRQYRMK 187
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 146 bits (370), Expect = 6e-45
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV VG G VGK+ L + ++F DY PT D+Y + +D + + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRSE 142
+R + + + FL FSI S+ + + ++ VP +LVG K+DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ VS + K + Y+E SAK +D+VF +R
Sbjct: 125 RQ------------VSVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMR 163
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 144 bits (366), Expect = 4e-44
Identities = 60/199 (30%), Positives = 93/199 (46%), Gaps = 30/199 (15%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
K+ VG VGK+ L I +N F +Y PT+ D+Y + +D +T + + DTAGQ
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 62
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADL 139
E+Y +R + FL F+I +T S+E+I + ++K VP++LVG K DL
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDL 121
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR----- 194
++T V T Q + + R ++E SAK +G+D F VR
Sbjct: 122 --PSRT-----------VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREIRKH 167
Query: 195 --------SAVKKQDKSCC 205
KK+ K+ C
Sbjct: 168 KEKMSKDGKKKKKKSKTKC 186
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 144 bits (365), Expect = 9e-44
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 16/193 (8%)
Query: 13 KDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYD 72
K ++ KV VG G VGK+ L + ++F DY PT D+Y + +D +
Sbjct: 4 NKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ 63
Query: 73 VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPI 130
+ + DTAGQEDY +R + + + FL FSI S+ + + ++ VP
Sbjct: 64 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPF 122
Query: 131 ILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
+LVG K+DL + + VS + K + Y+E SAK +D+VF
Sbjct: 123 LLVGNKSDLEDKRQ------------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFF 169
Query: 191 AAVRSAVKKQDKS 203
+R ++ +
Sbjct: 170 DLMREIRARKMED 182
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 143 bits (363), Expect = 1e-43
Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
+V G G VGK+ L++ + F Y+PT+ D Y I+ D + + DT G +
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF 69
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL---KHHCPKVPIILVGTKADLRS 141
++ +S F+L FS+ S S E + Y + K +P++LVG K D
Sbjct: 70 PAMQRLSISKGHAFILVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDE-- 126
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+++ V T + + + ++ K A ++E SAK+N + ++F + ++
Sbjct: 127 -----TQRE------VDTREAQAVAQEWKCA-FMETSAKMNYNVKELFQELLTLETRRNM 174
Query: 202 KS 203
Sbjct: 175 SL 176
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 143 bits (362), Expect = 1e-43
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 17/178 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
K+ VGDG VGK+ L I + F DY PT+ D+Y +DN+ + + DTAGQE++
Sbjct: 20 KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 79
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSE 142
+R D FL+ +S+ +S+E++ +++ + P+ILV K DL
Sbjct: 80 SAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHL 138
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE-GLDQVFIAAVRSAVKK 199
K V+ QGK+M K Y+E SAK +D+ F VR ++
Sbjct: 139 RK------------VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 141 bits (358), Expect = 5e-43
Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 18/183 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
+V +GD VGKT L + + D Y T+TVD + + + DT E
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 85 ER--LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLR 140
++ + +++ +SI S+E+ S+ +L+ H VPIILVG KADL
Sbjct: 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLA 124
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+ VS +G+ ++E SA L + ++F VR ++
Sbjct: 125 RCRE------------VSVEEGRACAVVFDCK-FIETSATLQHNVAELFEGVVRQLRLRR 171
Query: 201 DKS 203
S
Sbjct: 172 RDS 174
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 140 bits (354), Expect = 3e-42
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 18/183 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF-DNYPDTITVDNKTYDVTLWDTAGQED 83
KV VG+ VGK+ L T + + + P D Y I VD + + ++D Q D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 84 YE-RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLR 140
LR D FL+ FS+ S+ + + L+ +P+ILVG K+DL
Sbjct: 85 AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 143
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+ VS +G+ + + ++E SA L+ ++F AVR ++
Sbjct: 144 RSRE------------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELFEGAVRQIRLRR 190
Query: 201 DKS 203
++
Sbjct: 191 GRN 193
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 137 bits (348), Expect = 1e-41
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 17/172 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
KV +G VGK+ L Y +I VD + + ++D Q+
Sbjct: 4 KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRSE 142
L D +++ +S+ S+E S+ +L+ VPIILVG K+DL
Sbjct: 63 RWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRS 121
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ VS +G+ ++E SA L+ + +F VR
Sbjct: 122 RE------------VSVDEGRACAVVFDCK-FIETSAALHHNVQALFEGVVR 160
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 136 bits (346), Expect = 4e-41
Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 20/183 (10%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
+ + +G GK+ L + +F ++Y P + D Y TVD++ + + DTA
Sbjct: 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADL 79
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC----PKVPIILVGTKA 137
+ R FL+ +S+ S S+++ S + L H +P +L+G K
Sbjct: 80 DTP-RNCERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKL 137
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN-EGLDQVFIAAVRSA 196
D+ + V+ ++G + + + E SA L+ E + VF AVR A
Sbjct: 138 DMAQYRQ------------VTKAEGVALAGRFGCL-FFEVSACLDFEHVQHVFHEAVREA 184
Query: 197 VKK 199
++
Sbjct: 185 RRE 187
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 136 bits (346), Expect = 4e-41
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 18/188 (9%)
Query: 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL 75
+S + +K+ G VGK+ L++ +F +Y PT+ Y T+D++ + +
Sbjct: 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEI 80
Query: 76 WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILV 133
DTAGQED R + F+L + I S+E + L V +ILV
Sbjct: 81 LDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILV 138
Query: 134 GTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG-LDQVFIAA 192
G KADL + VST +G+K+ ++ A + ECSA EG + ++F
Sbjct: 139 GNKADLDHSRQ------------VSTEEGEKLATELACA-FYECSACTGEGNITEIFYEL 185
Query: 193 VRSAVKKQ 200
R +++
Sbjct: 186 CREVRRRR 193
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 135 bits (343), Expect = 8e-41
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF-DNYPDTITVDNKTYDVTLWDTAGQED 83
KV VG+ VGK+ L T + + D Y I VD + + ++D Q D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 84 YE-RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLR 140
L+ D FL+ FS+ S+ + + L+ +P+ILVG K+DL
Sbjct: 64 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ VS +G+ + + ++E SA L+ ++F AVR
Sbjct: 123 RSRE------------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELFEGAVR 163
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 133 bits (338), Expect = 1e-39
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 25 KVTTVGDGMVGKTCLLI--THTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL---WDTA 79
+V +G+ VGK+ L + +D D Y T+ VD ++ + L W+
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKA 137
G+ ++ L D +L+ +SI +S+E S+ +L+ +PIILVG K+
Sbjct: 99 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 155
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
DL + VS S+G+ ++E SA + + ++F VR
Sbjct: 156 DLVRCRE------------VSVSEGRACAVVFDCK-FIETSAAVQHNVKELFEGIVRQVR 202
Query: 198 KKQDK 202
++D
Sbjct: 203 LRRDS 207
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 133 bits (337), Expect = 2e-39
Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 17/181 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ VGDG GKT + H +F YV T+ + +P + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ LR Y C ++ F + S +Y+N+ W+ +L C +PI+L G K D++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 132
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
D ++ RK K +Y + SAK N ++ F+ R + +
Sbjct: 133 ------------DRKVKAKSIVFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179
Query: 203 S 203
Sbjct: 180 E 180
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 131 bits (333), Expect = 3e-39
Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 25/188 (13%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
L++ +GD GK+ L+ + T + Y + VD +T+ V + + AG
Sbjct: 6 PELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGA 64
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK----VPIILVGT-- 135
D + D + FS+ +S++ + S+ + +L + + + LVGT
Sbjct: 65 PDAKFSG-----WADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
+ S V ++ + + +K Y E A +D+VF +
Sbjct: 119 RISASSPRV------------VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQK 166
Query: 196 AVKKQDKS 203
V + +
Sbjct: 167 VVTLRKQQ 174
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 131 bits (331), Expect = 2e-38
Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 17/183 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPT--VFDNYPDTITVDNKTYDVTLWDTAGQ 81
K+ +GDG VGKT + + +F +Y T ++ + +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
E L+ + Y +L F + S + +N+ ++W E + + PI++ K D++
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+++K +S ++ + K EY E SAK F+ R +
Sbjct: 131 ------NRQK------ISKKLVMEVLKG-KNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177
Query: 201 DKS 203
D
Sbjct: 178 DLI 180
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 126 bits (318), Expect = 5e-37
Identities = 58/186 (31%), Positives = 84/186 (45%), Gaps = 24/186 (12%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
KV +GDG VGK+ L+ + NKF T T+ F N + VD + +WDTAG
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN--KDLEVDGHFVTMQIWDTAG 65
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGT 135
QE + LR Y +DC LL FS+ + S++N LS W E ++ P +++G
Sbjct: 66 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGN 124
Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
K D+ + VST + + R Y E SAK + F AVR
Sbjct: 125 KIDI--SERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 171
Query: 196 AVKKQD 201
+ +D
Sbjct: 172 VLATED 177
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 125 bits (317), Expect = 8e-37
Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 25 KVTTVGDGMVGKTCLLI--THTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL---WDTA 79
+V +G+ VGK+ L + +D D Y T+ VD ++ + L W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKA 137
G+ ++ L D +L+ +SI +S+E S+ +L+ +PIILVG K+
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 124
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
DL + VS S+G+ ++E SA + + ++F VR
Sbjct: 125 DLVRXRE------------VSVSEGRAXAVVFDXK-FIETSAAVQHNVKELFEGIVRQVR 171
Query: 198 KKQDKS 203
++D
Sbjct: 172 LRRDSK 177
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 125 bits (316), Expect = 1e-36
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 23/187 (12%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVD-NKTYDVTLWDTA 79
LKV +GD VGKT L+ + +K+ Y T+ F +TVD +K + +WDTA
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLT--KEVTVDGDKVATMQVWDTA 66
Query: 80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVG 134
GQE ++ L Y DC +L + + + SS+EN + W E H P +++G
Sbjct: 67 GQERFQSLGVAFYRGADCCVLVYDVTNASSFEN-IKSWRDEFLVHANVNSPETFPFVILG 125
Query: 135 TKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
K D K VS +++ + + SAK +D F R
Sbjct: 126 NKIDAEESKKI-----------VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174
Query: 195 SAVKKQD 201
SA+++
Sbjct: 175 SALQQNQ 181
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 122 bits (308), Expect = 1e-35
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 15/177 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
+K+ VG+G VGK+ ++ + + F DY T+ D I V+++ + LWDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+++ + Y +L FS S+E I S W ++ +P LV K DL +
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
+ + + + + +++K + S K + + +VF ++K
Sbjct: 125 SC------------IKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 119 bits (300), Expect = 2e-34
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGK+ LL+ +N F Y+ T+ D T+ ++ + + +WDTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
+ + Y T ++ + + S S+ N+ +W E+ +C V ILVG K D
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPER 128
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
V T K ++ + E SAK N ++++F ++ +
Sbjct: 129 KV------------VETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKKD 175
Query: 203 S 203
+
Sbjct: 176 N 176
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 119 bits (301), Expect = 3e-34
Identities = 39/181 (21%), Positives = 77/181 (42%), Gaps = 15/181 (8%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ VGD VGKTC++ F T+ D T+ + K + +WDTAGQE
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
+ + Y + + +L + I SS+ ++ W +++ + + +L+G K+DL
Sbjct: 91 FRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
+ VS ++ + + +E SAK + +++ F+ + +
Sbjct: 150 RE------------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG 197
Query: 203 S 203
Sbjct: 198 P 198
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 119 bits (301), Expect = 4e-34
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
LKV +GD VGKT L+ + KF Y T+ F + VD++ + +WDTAG
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT--KEVMVDDRLVTMQIWDTAG 66
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGT 135
QE ++ L Y DC +L F + + ++++ L W E P +++G
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKT-LDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
K DL + V+T + + Y E SAK ++Q F R+
Sbjct: 126 KIDLENRQ-------------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172
Query: 196 AVKKQDKS 203
A+K++ +
Sbjct: 173 ALKQETEV 180
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 118 bits (299), Expect = 7e-34
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAGQ 81
K+ GD VGK+ L+ +N+F + T+ F T+ VD + + LWDTAGQ
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIVDGERTVLQLWDTAGQ 87
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
E + + + D LL + + S+ NI +W ++ VPI+LVG KAD+R
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIR 146
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
T +K V G+K+ A + E SAK + + + R K+
Sbjct: 147 DTAATEGQKC------VPGHFGEKLAMTYG-ALFCETSAKDGSNIVEAVLHLAREVKKR 198
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 117 bits (295), Expect = 2e-33
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 15/178 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
L+V +G VGKT L+ T++ F TV D T+ + K + +WDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
+ + Y + +L + I +++++ KW + + ++LVG K D +
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
+ + ++ QG+K ++I + E SAK N +D++F+ V +KK
Sbjct: 146 DRE------------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 115 bits (289), Expect = 1e-32
Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 16/203 (7%)
Query: 2 LSGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNY 60
+ + + + K+ +G+ VGKT L + ++ F +V TV D
Sbjct: 1 MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60
Query: 61 PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE 120
T+ +K + +WDTAGQE Y + Y FLL + I + S+ + W +
Sbjct: 61 VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQ 119
Query: 121 LKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179
+K + +ILVG K DL E V G+++ + E+ E SA
Sbjct: 120 IKTYSWDNAQVILVGNKCDLEDERV------------VPAEDGRRLADDLG-FEFFEASA 166
Query: 180 KLNEGLDQVFIAAVRSAVKKQDK 202
K N + QVF V +K ++
Sbjct: 167 KENINVKQVFERLVDVICEKMNE 189
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 114 bits (288), Expect = 2e-32
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 16/181 (8%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ +G+ VGKTCL+ T+ FP T+ D T+ ++ + + +WDTAGQE
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
+ + Y + + +L + I S+ + +W E++ + KV +LVG K DL
Sbjct: 88 FRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAER 146
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
+ VS + ++ YLE SAK ++ ++++F+ + + +
Sbjct: 147 RE------------VSQQRAEEFSEAQD-MYYLETSAKESDNVEKLFLDLACRLISEARQ 193
Query: 203 S 203
+
Sbjct: 194 N 194
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 114 bits (287), Expect = 3e-32
Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 4 GAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPD 62
G+ + G D+DV + LK+ +G+ VGK+ LL+ T++ F + T+ D
Sbjct: 1 GSSGSSGMDEDVLT-----TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK 55
Query: 63 TITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK 122
TI+VD + +WDTAGQE + L P Y +L + + ++ + W EL+
Sbjct: 56 TISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELE 114
Query: 123 HHCPK--VPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180
+C + + +LVG K D EN+ V ++G K RK ++E SAK
Sbjct: 115 TYCTRNDIVNMLVGNKIDK--ENRE-----------VDRNEGLKFARKHS-MLFIEASAK 160
Query: 181 LNEGLDQVFIAAVRSAVKKQDK 202
+G+ F V ++
Sbjct: 161 TCDGVQCAFEELVEKIIQTPGL 182
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 114 bits (287), Expect = 4e-32
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 16/181 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K +GD VGK+CLL+ T+ +F + T+ + + +D K + +WDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
+ + Y LL + I ++ ++ + W + + H + I+L+G K+DL S
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLES 140
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
V +G+ R+ ++E SAK +++ FI + +K
Sbjct: 141 RRD------------VKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYRKIQ 187
Query: 202 K 202
+
Sbjct: 188 Q 188
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 113 bits (286), Expect = 4e-32
Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 16/205 (7%)
Query: 1 MLSGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDN 59
M + G + + K+ +G+ VGKT L + ++ F +V TV D
Sbjct: 1 MHHHHHHSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDF 60
Query: 60 YPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYP 119
T+ K + +WDTAGQE Y + Y F+L + I + S+ + W
Sbjct: 61 KVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWAT 119
Query: 120 ELKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178
++K + +ILVG K D+ E V T +G+ + ++ ++ E S
Sbjct: 120 QIKTYSWDNAQVILVGNKCDMEEERV------------VPTEKGQLLAEQLG-FDFFEAS 166
Query: 179 AKLNEGLDQVFIAAVRSAVKKQDKS 203
AK N + Q F V + K S
Sbjct: 167 AKENISVRQAFERLVDAICDKMSDS 191
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 113 bits (285), Expect = 4e-32
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 16/173 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K +GD VGK+CLL TE KF D T+ + I V + + +WDTAGQE
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
+ + Y L+ + I S+Y ++ S W + ++ P IIL+G KADL +
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEA 134
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ V+ + K+ + +LE SAK E ++ F+ A +
Sbjct: 135 QRD------------VTYEEAKQFAEENGLL-FLEASAKTGENVEDAFLEAAK 174
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 113 bits (285), Expect = 6e-32
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 20/184 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
K+ +GD VGKTC+L +E+ F + ++ T+ F TI +D K + +WDTAG
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKI--RTIELDGKRIKLQIWDTAG 66
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
QE + + Y +L + I + S++NI W ++ H V +++G K D+
Sbjct: 67 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDV 125
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
+ + VS +G+K+ +++E SAK N ++ F R K
Sbjct: 126 NDKRQ------------VSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAK 172
Query: 200 QDKS 203
DK+
Sbjct: 173 MDKN 176
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 113 bits (286), Expect = 6e-32
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 16/182 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K +G GK+CLL ENKF D T+ + + V KT + +WDTAGQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
+ + Y LL + I S +Y ++ + W + + P + +IL G K DL
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDP 144
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
E + V+ + + ++ + +LE SA E +++ F+ R+ + K D
Sbjct: 145 ERE------------VTFLEASRFAQENELM-FLETSALTGENVEEAFLKCARTILNKID 191
Query: 202 KS 203
Sbjct: 192 SG 193
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 112 bits (283), Expect = 7e-32
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
KV +G+G VGKT L++ + ENKF ++ T+ + + K ++ +WDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
+ L P+ Y +++ +L + I S++ + W EL+ ++ + +VG K DL E
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
VS + + + A++ SAK N+G++++F+ +
Sbjct: 127 RH------------VSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCK 165
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 113 bits (284), Expect = 9e-32
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 16/181 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K +G+ GK+CLL E KF D T+ + I V K + +WDTAGQE
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
+ + Y LL + I S +Y + + W + + + IIL G K DL +
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDA 129
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
+ + V+ + + ++ + +LE SA E +++ F+ R + K +
Sbjct: 130 DRE------------VTFLEASRFAQENELM-FLETSALTGENVEEAFVQCARKILNKIE 176
Query: 202 K 202
Sbjct: 177 S 177
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 113 bits (284), Expect = 9e-32
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 16/197 (8%)
Query: 5 AQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDT 63
+G + K+ +GD VGK+CLL+ ++ + Y+ T+ D T
Sbjct: 15 NLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT 74
Query: 64 ITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH 123
I +D KT + +WDTAGQE + + Y ++ + + S+ N+ +W E+
Sbjct: 75 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDR 133
Query: 124 HCPK-VPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182
+ + V +LVG K DL ++ V + K+ + +LE SAK
Sbjct: 134 YASENVNKLLVGNKCDLTTKKV------------VDYTTAKEFADSLG-IPFLETSAKNA 180
Query: 183 EGLDQVFIAAVRSAVKK 199
++Q F+ K+
Sbjct: 181 TNVEQSFMTMAAEIKKR 197
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 112 bits (282), Expect = 1e-31
Identities = 45/184 (24%), Positives = 92/184 (50%), Gaps = 21/184 (11%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
+K+ +GD VGK+CLL+ E+KF ++ T+ F T+ ++ K + +WDTAG
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI--KTVDINGKKVKLQIWDTAG 61
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
QE + + Y +L + I ++ NI +W+ + H + ++LVG K+D+
Sbjct: 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
+ + V+ QG+ + +++ ++E SAK ++ ++++F + +K
Sbjct: 121 -------ETRV------VTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEK 166
Query: 200 QDKS 203
D +
Sbjct: 167 IDSN 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 112 bits (283), Expect = 1e-31
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 16/181 (8%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
KV +GD VGK+ LL T N+F + T+ + +I VD KT +WDTAGQE
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSE 142
Y R+ Y LL + I +YEN+ +W EL+ H + I+LVG K+DLR
Sbjct: 67 YRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
V T + + K + ++E SA + +++ F + + +
Sbjct: 126 RA------------VPTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQ 172
Query: 203 S 203
Sbjct: 173 K 173
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 112 bits (282), Expect = 1e-31
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 16/180 (8%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
KV +G+ VGKT LL T N+F D T+ + T+ + +WDTAG E
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
Y + Y LL F + +Y + +W EL H + ++LVG K+DL
Sbjct: 87 YRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
+ V T + + +LE SA + ++ F ++ K K
Sbjct: 146 RE------------VPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLKEIFAKVSK 192
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 112 bits (282), Expect = 2e-31
Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 16/182 (8%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +G+ VGKT L + ++ F +V TV D TI ++K + +WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRS 141
Y + Y F+L + I + S+ + W ++K + ++LVG K D+
Sbjct: 69 RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMED 127
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
E VS+ +G+++ + E+ E SAK N + Q F V +K
Sbjct: 128 ERV------------VSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVICEKMS 174
Query: 202 KS 203
+S
Sbjct: 175 ES 176
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 111 bits (281), Expect = 2e-31
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 16/173 (9%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
KV +GD VGK+ LL T N+F + T+ + +I VD KT +WDTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
Y + Y LL + I +YEN+ +W EL+ H + I+LVG K+DLR
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRH 148
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
V T + + K + ++E SA + ++ F +
Sbjct: 149 LRA------------VPTDEARAFAEKNGLS-FIETSALDSTNVEAAFQTILT 188
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 111 bits (281), Expect = 2e-31
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 16/181 (8%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ +GD VGK+CLL+ ++ + Y+ T+ D TI +D KT + +WDTAGQE
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLRSE 142
+ + Y ++ + + S+ N+ +W E+ + + V +LVG K DL ++
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
V + K+ + +LE SAK ++Q F+ K+
Sbjct: 137 KV------------VDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKKRMGP 183
Query: 203 S 203
Sbjct: 184 G 184
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 111 bits (280), Expect = 2e-31
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAGQ 81
K+ +G+ VGKT L+ + F Y T+ F + T+ ++++T + LWDTAGQ
Sbjct: 16 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTAGQ 73
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
E + L P ++ ++ + I +T+S+ SKW +++ V I+LVG K DL
Sbjct: 74 ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLS 132
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ + VST +G++ +++ ++E SAK + Q+F
Sbjct: 133 DKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAA 173
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 111 bits (279), Expect = 3e-31
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 16/172 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ +G+ VGK+ L++ + +F T+ T+ +D+ T +WDTAGQE
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRSE 142
Y L PM Y ++ + I + S+ W EL+ P + I L G KADL ++
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
V + + ++E SAK + ++++F+A +
Sbjct: 127 RA------------VDFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAK 165
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 111 bits (279), Expect = 3e-31
Identities = 35/191 (18%), Positives = 72/191 (37%), Gaps = 23/191 (12%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTV---FDNYPDTITVDNKTY-DVTL-- 75
+K+ VG+ GKT LL + K TV ++ I + +K D+ L
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDW--PIQIRDKRKRDLVLNV 60
Query: 76 WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGT 135
WD AG+E++ P +L + + + + + W +K P+ILVGT
Sbjct: 61 WDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGT 120
Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK----AAEYLECSAKLNEGLDQVFIA 191
D+ E + + K++ K + + + ++ L ++
Sbjct: 121 HLDVSDEK---------QRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKT 171
Query: 192 AVRSAVKKQDK 202
+ ++ + +
Sbjct: 172 IINESLNFKIR 182
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 110 bits (277), Expect = 5e-31
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
LKV +GD VGK+ ++ E+ F + PT+ F T+ N+ + +WDTAG
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAG 64
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
E + L PM Y + ++ + I ++ + W EL+ H P + + + G K DL
Sbjct: 65 LERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDL 123
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
+ V K I A ++E SAK ++++FI R
Sbjct: 124 TDVRE------------VMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 165
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 111 bits (279), Expect = 5e-31
Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 20/198 (10%)
Query: 1 MLSGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---F 57
M S V S + LKV +GD VGK+ ++ ++ F + PT+ F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASF 60
Query: 58 DNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKW 117
T+ N+ + +WDTAGQE + L PM Y + ++ + I S+ + KW
Sbjct: 61 MT--KTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKW 117
Query: 118 YPELK-HHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176
ELK H + + + G K DL + V K+ I A +E
Sbjct: 118 VKELKEHGPENIVMAIAGNKCDLSDIRE------------VPLKDAKEYAESIGAI-VVE 164
Query: 177 CSAKLNEGLDQVFIAAVR 194
SAK ++++F R
Sbjct: 165 TSAKNAINIEELFQGISR 182
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 111 bits (280), Expect = 5e-31
Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAGQ 81
K+ +G+ VGKT L+ + F Y T+ F + T+ ++++T + LWDTAG
Sbjct: 18 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTAGL 75
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
E + L P ++ ++ + I + +S++ +KW +++ V I+LVG K DL
Sbjct: 76 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLA 134
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
+ + VS +G++ +++ ++E SAK + Q+F + +
Sbjct: 135 DKRQ------------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPGME 181
Query: 201 DKS 203
Sbjct: 182 STQ 184
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 109 bits (276), Expect = 9e-31
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 16/181 (8%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ +GD GK+ L++ +++F T+ + T+ V++ T +WDTAGQE
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
Y L PM Y ++ F + + +S+E KW EL+ P + + L G K+DL
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLL-- 130
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
D +K V+ + ++ ++E SAK + ++F R + Q
Sbjct: 131 ----DARK------VTAEDAQTYAQENGLF-FMETSAKTATNVKEIFYEIARRLPRVQPT 179
Query: 203 S 203
Sbjct: 180 E 180
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 109 bits (274), Expect = 2e-30
Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 21/184 (11%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTD-YVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
KV VGD VGKTCLL+ + F ++ TV F N + VD + +WDTAG
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRN--KVLDVDGVKVKLQMWDTAG 69
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
QE + + Y + LL + + + +S++NI W E+ + V ++L+G K D
Sbjct: 70 QERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDS 128
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
E V G+K+ ++ ++E SAK +D F A + ++
Sbjct: 129 AHERV------------VKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELKRR 175
Query: 200 QDKS 203
K+
Sbjct: 176 SMKA 179
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 110 bits (276), Expect = 2e-30
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
K+ +G+ VGK+CLL+ +++ + DY+ T+ F T+ +D KT + +WDTAG
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKI--KTVELDGKTVKLQIWDTAG 66
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADL 139
QE + + Y + ++ + + S+ + W E+ + V +LVG K DL
Sbjct: 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
+ + V K+ K +LE SA + ++ F+ R +
Sbjct: 126 KDKRV------------VEYDVAKEFADANK-MPFLETSALDSTNVEDAFLTMARQIKES 172
Query: 200 QDKS 203
+
Sbjct: 173 MSQQ 176
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 109 bits (275), Expect = 4e-30
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 27/193 (13%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVT-------- 74
+K+ +GD VGKT L +T+NKF ++ TV D + + + + +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 75 --LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPI 130
LWDTAGQE + L + + FLL F + S S+ N+ W +L+ + C I
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDI 144
Query: 131 ILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
+L+G KADL + + V+ Q +++ K Y E SA + +++
Sbjct: 145 VLIGNKADLPDQRE------------VNERQARELADKYG-IPYFETSAATGQNVEKAVE 191
Query: 191 AAVRSAVKKQDKS 203
+ +K+ ++
Sbjct: 192 TLLDLIMKRMEQC 204
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 109 bits (274), Expect = 5e-30
Identities = 45/184 (24%), Positives = 92/184 (50%), Gaps = 21/184 (11%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
+K+ +GD VGK+CLL+ E+KF ++ T+ F T+ ++ K + LWDTAG
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI--KTVDINGKKVKLQLWDTAG 78
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
QE + + Y +L + + ++ NI +W+ + H + ++LVG K+D+
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
+ + V+ QG+ + +++ ++E SAK ++ ++++F + +K
Sbjct: 138 -------ETRV------VTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEK 183
Query: 200 QDKS 203
D +
Sbjct: 184 IDSN 187
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 108 bits (273), Expect = 5e-30
Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 23/189 (12%)
Query: 24 LKVTTVGDGMVGKTCLLI--THTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLW--DT 78
KV VG+ VGK+ L+ T +KF DY T + +T+ + T V L+ DT
Sbjct: 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDT 80
Query: 79 AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK----HHCPKVPIILVG 134
AG + Y+ + +L F + S S+E+ W+ LK + +LV
Sbjct: 81 AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVA 139
Query: 135 TKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL-NEGLDQVFIAAV 193
K DL + V + ++ + SA + D F++
Sbjct: 140 NKTDLPPQRHQ-----------VRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIA 187
Query: 194 RSAVKKQDK 202
+ + +
Sbjct: 188 TTFYRNYED 196
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 108 bits (272), Expect = 6e-30
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 27/192 (14%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-----------FDNYPDTITVDNKTYDV 73
K +GD VGKT +L +T+ KF + ++ TV N PD + +
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 74 TLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPII 131
LWDTAG E + L + + FLL F + + S+ N+ W +L+ H I+
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIV 131
Query: 132 LVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
L G K+DL + V + +++ K Y E SA +
Sbjct: 132 LCGNKSDLEDQRA------------VKEEEARELAEKYG-IPYFETSAANGTNISHAIEM 178
Query: 192 AVRSAVKKQDKS 203
+ +K+ ++S
Sbjct: 179 LLDLIMKRMERS 190
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 107 bits (270), Expect = 9e-30
Identities = 41/186 (22%), Positives = 66/186 (35%), Gaps = 22/186 (11%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTL--WDTAG 80
LK+ +GDG GKT L + F Y T+ D + IT+ +VTL WD G
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL-NVTLQIWDIGG 65
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK----HHCPKVPIILVGTK 136
Q ++ LL + I + S+EN+ WY +K + + LVG K
Sbjct: 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNK 124
Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
DL + + + ++ SAK + + F
Sbjct: 125 IDLEHMRT------------IKPEKHLRFCQE-NGFSSHFVSAKTGDSVFLCFQKVAAEI 171
Query: 197 VKKQDK 202
+ +
Sbjct: 172 LGIKLN 177
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 108 bits (272), Expect = 1e-29
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 16/180 (8%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
K+ +GD VGK+ LL T+N+F D T+ + T+ ++ K +WDTAGQE
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
Y + Y L+ + I +SSYEN + W EL+ + V + L+G K+DL
Sbjct: 75 YRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
V T + K ++ + + E SA +E +D+ F + + +K K
Sbjct: 134 RA------------VPTEESKTFAQENQLL-FTETSALNSENVDKAFEELINTIYQKVSK 180
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 104 bits (262), Expect = 1e-28
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 22/184 (11%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
K+ +GD VGKTCL +FP T+ D + +D + + LWDTAGQE
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 83 DYER-LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADL 139
+ + + Y N + + + + +S+ ++ W E K H +P ILVG K DL
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK---LNEGLDQVFIAAVRSA 196
RS + V T +K E SAK N+ ++ +F+
Sbjct: 140 RSAIQ------------VPTDLAQKFADTHS-MPLFETSAKNPNDNDHVEAIFMTLAH-K 185
Query: 197 VKKQ 200
+K
Sbjct: 186 LKSH 189
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 108 bits (271), Expect = 7e-28
Identities = 32/186 (17%), Positives = 57/186 (30%), Gaps = 26/186 (13%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPT---------VFDNYPDTITVDNKTYDVT 74
+KV +GDGM GKT LL F T + + K
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 75 LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVG 134
WD GQE + ++L + N W ++ + K P+I+V
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSN-KHYWLRHIEKYGGKSPVIVVM 157
Query: 135 TKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
K D + + + I+ + S K +G++ + +
Sbjct: 158 NKIDENPSYN------------IEQKKINERFPAIE-NRFHRISCKNGDGVESIAKSLKS 204
Query: 195 SAVKKQ 200
+ +
Sbjct: 205 AVLHPD 210
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 97.2 bits (242), Expect = 8e-26
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 17/174 (9%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAGQ 81
K+ +G+ VGK+ +++ N F + PT+ F +T++ T +WDTAGQ
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLT--QRVTINEHTVKFEIWDTAGQ 62
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
E + L P Y N L+ + + S+ W EL + I LVG K D
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXL 121
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
E ++K V+ +G+K+ + + E SAK E ++ VF+
Sbjct: 122 QEG---GERK------VAREEGEKLAEEKGLL-FFETSAKTGENVNDVFLGIGE 165
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 94.5 bits (235), Expect = 2e-24
Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 58/216 (26%)
Query: 24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVT------ 74
K +G+ VGK+ +++ T++ F + T+ F Y + +++
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTY--VVNLNDINIKNNSNNEKN 65
Query: 75 -------------------------------LWDTAGQEDYERLRPMSYPNTDCFLLCFS 103
+WDTAGQE Y + P+ Y C ++ F
Sbjct: 66 NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK 163
I ++++ + W +LK IILV K D +K + V + +
Sbjct: 126 ISNSNTLDRA-KTWVNQLKIS-SNYIIILVANKIDK-------NKFQ------VDILEVQ 170
Query: 164 KMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
K + +++ SAK + +F K
Sbjct: 171 KYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIYKN 205
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 80.0 bits (197), Expect = 1e-18
Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 30/175 (17%)
Query: 35 GKTCLLITHTENKFPTD-----YVPTVFDNYP----DTITVDNKTYDVTLWDTAGQEDY- 84
C + + +F D + T Y T + D G E
Sbjct: 92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDF 151
Query: 85 -ERLRPMSYPNTDCFLLCFSI--GSTSSYENILSKWYPELKHHCP--KVPIILVGTKADL 139
++ P D FLL + G ++++ L K+ L + K PI++V TK D
Sbjct: 152 EQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTKCDE 210
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
E + + + + K + +E SA+ N +D F V+
Sbjct: 211 GVERY------------IRDAHTFALSK--KNLQVVETSARSNVNVDLAFSTLVQ 251
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 56.7 bits (137), Expect = 2e-10
Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 35/200 (17%)
Query: 22 KALKVTTVGDGMVGKTCLL----------ITHTENKFPTDYVPTVFDNY--PDTITVDNK 69
K+ G G+ GKT L T+ T+F ++ D V
Sbjct: 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF 72
Query: 70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSS--YENI-----LSKWYPELK 122
L+ GQ Y R + D + F S + N + + E
Sbjct: 73 KTRFHLYTVPGQVFYNASRKLILRGVDG--IVFVADSAPNRLRANAESMRNMRENLAEYG 130
Query: 123 HHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182
VPI++ K DL A V++V + + + LE A
Sbjct: 131 LTLDDVPIVIQVNKRDL---------PDALPVEMVRAVVDPEGKFPV-----LEAVATEG 176
Query: 183 EGLDQVFIAAVRSAVKKQDK 202
+G+ + R + +
Sbjct: 177 KGVFETLKEVSRLVLARVAG 196
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 51.5 bits (123), Expect = 3e-08
Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 8/145 (5%)
Query: 25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTY-DVTLWDTAGQED 83
K+ +G GK+ + N D + + + LWD GQ+
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64
Query: 84 Y-----ERLRPMSYPNTDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTK 136
+ + + + + F + ST ++I +K +L+ + P I ++ K
Sbjct: 65 FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHK 124
Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQ 161
DL +K + + +L TS
Sbjct: 125 MDLVQLDKREELFQIMMKNLSETSS 149
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 48.4 bits (115), Expect = 2e-07
Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 9/144 (6%)
Query: 14 DVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTY-D 72
++ +G GK+ + P + + N + N ++ +
Sbjct: 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVN 70
Query: 73 VTLWDTAGQEDYERL---RPMSYPNTDCFLLCFSIGSTSSYENILSK---WYPELKHHCP 126
+WD GQ D+ M + T L + I + Y L++ + P
Sbjct: 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGA--LIYVIDAQDDYMEALTRLHITVSKAYKVNP 128
Query: 127 KVPIILVGTKADLRSENKTIDKKK 150
+ + K D S++ I+ ++
Sbjct: 129 DMNFEVFIHKVDGLSDDHKIETQR 152
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 47.8 bits (113), Expect = 7e-07
Identities = 27/182 (14%), Positives = 51/182 (28%), Gaps = 29/182 (15%)
Query: 24 LKVTTVGDGMVGKTCLL------ITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWD 77
L V G+ GK+ + E T V + +V WD
Sbjct: 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME---RHPYKHPNIPNVVFWD 126
Query: 78 TAG-----QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIIL 132
G L M + D F++ + + +I K
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKA------ISMMKKEFYF 180
Query: 133 VGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAA 192
V TK D N+ + + T +K+ + I+ + + +F+ +
Sbjct: 181 VRTKVDSDITNEADGEPQ--------TFDKEKVLQDIRLN-CVNTFRENGIAEPPIFLLS 231
Query: 193 VR 194
+
Sbjct: 232 NK 233
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 38.3 bits (90), Expect = 5e-04
Identities = 40/184 (21%), Positives = 66/184 (35%), Gaps = 44/184 (23%)
Query: 22 KALKVTTVG-DGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG 80
+ +++T VG GKT + +F D +PTV N + + LWD G
Sbjct: 21 EEMELTLVGLQY-SGKTTFVNVIASGQFNEDMIPTVGFN---MRKITKGNVTIKLWDIGG 76
Query: 81 QEDYERLRPM---SYPNTDCFLLCFSIGST-------SSYE--NILSKWYPELKHHCPKV 128
Q R R M + + + + S E N+L K P+L+ +
Sbjct: 77 Q---PRFRSMWERYCRGVSA--IVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GI 125
Query: 129 PIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR-RKIKAAEY--LECSAKLNEGL 185
P++++G K DL E+ +KM I+ E S K + +
Sbjct: 126 PVLVLGNKRDLP------GALDEKEL-------IEKMNLSAIQDREICCYSISCKEKDNI 172
Query: 186 DQVF 189
D
Sbjct: 173 DITL 176
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 38.4 bits (90), Expect = 5e-04
Identities = 39/190 (20%), Positives = 66/190 (34%), Gaps = 53/190 (27%)
Query: 22 KALKVTTVG-DGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTI-----TVDNKTYDVTL 75
K + V +G D GKT ++ NK + + P TI + + T+
Sbjct: 20 KEVHVLCLGLDN-SGKTTII-----NKLKPSNAQSQ-NILP-TIGFSIEKFKSSSLSFTV 71
Query: 76 WDTAGQEDYERLRPM---SYPNTDCFLLCFSIGST---------SSYENILSKWYPELKH 123
+D +GQ R R + Y + F I S+ + +L+ P++KH
Sbjct: 72 FDMSGQ---GRYRNLWEHYYKEGQA--IIFVIDSSDRLRMVVAKEELDTLLNH--PDIKH 124
Query: 124 HCPKVPIILVGTKADLRSENKTIDKKKAAEV----DLVSTSQGKKMRRKIKAAEYLECSA 179
++PI+ K DLR D + +V L + + A
Sbjct: 125 R--RIPILFFANKMDLR------DAVTSVKVSQLLCLENIKD-----KPWH---ICASDA 168
Query: 180 KLNEGLDQVF 189
EGL +
Sbjct: 169 IKGEGLQEGV 178
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 36.5 bits (85), Expect = 0.002
Identities = 34/183 (18%), Positives = 68/183 (37%), Gaps = 31/183 (16%)
Query: 22 KALKVTTVG-DGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG 80
K K+ +G D GKT LL +++ +VPT+ +P + + T +D G
Sbjct: 24 KTGKLVFLGLDN-AGKTTLLHMLKDDRLGQ-HVPTL---HPTSEELTIAGMTFTTFDLGG 78
Query: 81 QEDYERLRPM---SYPNTDCFLLCFSIGST-------SSYE--NILSKWYPELKHHCPKV 128
+ R + P + + F + S E ++++ + V
Sbjct: 79 H---IQARRVWKNYLPAING--IVFLVDCADHERLLESKEELDSLMTD--ETIA----NV 127
Query: 129 PIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY--LECSAKLNEGLD 186
PI+++G K D ++ + +T +G +++ A CS +G
Sbjct: 128 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYG 187
Query: 187 QVF 189
+ F
Sbjct: 188 EGF 190
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 36.1 bits (84), Expect = 0.003
Identities = 40/186 (21%), Positives = 64/186 (34%), Gaps = 49/186 (26%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTI-----TVDNKTYDVTLW 76
K L++ +G GKT +L + V T P TI T+ K + +W
Sbjct: 17 KELRILILGLDGAGKTTIL-----YRLQIGEVVTTK---P-TIGFNVETLSYKNLKLNVW 67
Query: 77 DTAGQEDYERLRPM---SYPNTDCFLLCFSIGST---------SSYENILSKWYPELKHH 124
D GQ +RP Y +T + F + ST +L + EL+
Sbjct: 68 DLGGQ---TSIRPYWRCYYADTAA--VIFVVDSTDKDRMSTASKELHLMLQE--EELQ-- 118
Query: 125 CPKVPIILVGTKADLRSENKTIDKKKAAEV-DLVSTSQGKKMRRKIKAAEYLECSAKLNE 183
+++ K D A+EV ++ + K I A SA E
Sbjct: 119 --DAALLVFANKQDQP------GALSASEVSKELNLVELKDRSWSIVA-----SSAIKGE 165
Query: 184 GLDQVF 189
G+ +
Sbjct: 166 GITEGL 171
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 36.1 bits (84), Expect = 0.003
Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 61/192 (31%)
Query: 22 KALKVTTVG-DGMVGKTCLL-------ITHTENKFPTDYVPTVFDNYPDTITVDNKTYDV 73
+ ++V +G D GKT +L + T VPTV N T+ K
Sbjct: 21 RKIRVLMLGLDN-AGKTSILYRLHLGDVVTT--------VPTVGVNLE---TLQYKNISF 68
Query: 74 TLWDTAGQEDYERLRPM---SYPNTDCFLLCFSIGST-------SSYE--NILSKWYPEL 121
+WD GQ +RP + +TD + + + ST + +E +L + EL
Sbjct: 69 EVWDLGGQ---TGVRPYWRCYFSDTDA--VIYVVDSTDRDRMGVAKHELYALLDE--DEL 121
Query: 122 KHHCPKVPIILVGTKADLRSENKTIDKKKAAEV----DLVSTSQGKKMRRKIKAAEYLEC 177
+ K +++ K DL D AE+ + S R ++
Sbjct: 122 R----KSLLLIFANKQDLP------DAASEAEIAEQLGVSSIMN-----RTW---TIVKS 163
Query: 178 SAKLNEGLDQVF 189
S+K +GL +
Sbjct: 164 SSKTGDGLVEGM 175
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 36.3 bits (83), Expect = 0.003
Identities = 13/113 (11%), Positives = 33/113 (29%), Gaps = 9/113 (7%)
Query: 64 ITVDNKTYDVTLWD---TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYEN----ILSK 116
YD + + A Q + + + + + + E + +
Sbjct: 134 KEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKR 193
Query: 117 WYPELKHHCPKVPII--LVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR 167
+ ++ ++G K L + + + +V QG+ MR
Sbjct: 194 IIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRW 246
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.006
Identities = 31/205 (15%), Positives = 51/205 (24%), Gaps = 68/205 (33%)
Query: 18 KSVHKALK-------VTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKT 70
+ +AL V G GKT + V +Y +D K
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWV-------------ALDVCLSYKVQCKMDFKI 184
Query: 71 YDVTLWDTAGQ--EDYERLRPMS--YPNTDCFLLCFSIGSTS------------------ 108
+ W L + D S S++
Sbjct: 185 F----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 109 -SYEN---ILSK-WYPE----LKHHCPKVPIILVGTK----ADLRSENKTIDKKKAAEVD 155
YEN +L + C IL+ T+ D S T
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCK----ILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 156 LVSTSQGKKMRRKIKAAEYLECSAK 180
++ + K + +YL+C +
Sbjct: 297 TLTPDEVKSL-----LLKYLDCRPQ 316
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 35.8 bits (83), Expect = 0.006
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 28/123 (22%)
Query: 73 VTLWDTAGQEDYERL-RPM------SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC 125
VTL DT G +D L R + DC +L T +++++ K
Sbjct: 85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNL----FKEM- 139
Query: 126 PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGL 185
++P ++V K D+ E KA E+ + A+ L SA +G
Sbjct: 140 -EIPFVVVVNKIDVLGE-------KAEELK--------GLYESRYEAKVLLVSALQKKGF 183
Query: 186 DQV 188
D +
Sbjct: 184 DDI 186
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 34.9 bits (81), Expect = 0.009
Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 48/189 (25%)
Query: 22 KALKVTTVG-DGMVGKTCLLITHTENKF----PTDYVPTVFDNYPDTITVDNKTYDVTLW 76
K K+ +G D GKT LL + PT +P + + T +
Sbjct: 22 KHGKLLFLGLDN-AGKTTLL-----HMLKNDRLATLQPTW---HPTSEELAIGNIKFTTF 72
Query: 77 DTAGQEDYERLRPM---SYPNTDCFLLCFSIGST-------SSYE--NILSKWYPELKHH 124
D G + R + +P + + F + + + E + + ELK
Sbjct: 73 DLGGH---IQARRLWKDYFPEVNG--IVFLVDAADPERFDEARVELDALFNI--AELK-- 123
Query: 125 CPKVPIILVGTKADLRSENKTIDKKKAAEV----DLVSTSQGKKMRRKIKAAEYLECSAK 180
VP +++G K D + AE+ L++T G + + E CS
Sbjct: 124 --DVPFVILGNKIDAP------NAVSEAELRSALGLLNT-TGSQRIEGQRPVEVFMCSVV 174
Query: 181 LNEGLDQVF 189
+ G + F
Sbjct: 175 MRNGYLEAF 183
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 34.5 bits (80), Expect = 0.010
Identities = 42/188 (22%), Positives = 66/188 (35%), Gaps = 57/188 (30%)
Query: 24 LKVTTVG-DGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTI-----TVDNKTYDVTLWD 77
+++ VG D GKT +L K + T P TI TV+ K T+WD
Sbjct: 1 MRILMVGLDA-AGKTTIL-----YKLKLGEIVTTI---P-TIGFNVETVEYKNISFTVWD 50
Query: 78 TAGQEDYERLRPM---SYPNTDCFLLCFSIGST---------SSYENILSKWYPELKHHC 125
GQ +++RP+ + NT L F + S +L++ EL+
Sbjct: 51 VGGQ---DKIRPLWRHYFQNTQG--LIFVVDSNDRERVNEAREELMRMLAE--DELR--- 100
Query: 126 PKVPIILVGTKADLRSENKTIDKKKAAEV----DLVSTSQGKKMRRKIKAAEYLECSAKL 181
+++ K DL + AAE+ L S R A
Sbjct: 101 -DAVLLVFANKQDLP------NAMNAAEITDKLGLHSLRH-----RNWY---IQATCATS 145
Query: 182 NEGLDQVF 189
+GL +
Sbjct: 146 GDGLYEGL 153
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 34.7 bits (80), Expect = 0.011
Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 24/119 (20%)
Query: 35 GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMS--- 91
GKT L + ++ ++ D+ +N+ +TL D G E LR
Sbjct: 19 GKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGH---ESLRFQLLDR 74
Query: 92 -YPNTDCFLLCFSIGSTSSYE----------NILSKWYPELKHHCPKVPIILVGTKADL 139
+ + F + S + +L + +++ K D+
Sbjct: 75 FKSSARA--VVFVVDSAAFQREVKDVAEFLYQVLID--SMALKNS--PSLLIACNKQDI 127
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 33.8 bits (78), Expect = 0.017
Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 47/191 (24%)
Query: 16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKF----PTDYVPTVFDNYPDTITVDNKTY 71
K K + L++ +G GKT +L KF PT+ N T++++ +
Sbjct: 11 KMKQKERELRLLMLGLDNAGKTTIL-----KKFNGEDVDTISPTLGFN---IKTLEHRGF 62
Query: 72 DVTLWDTAGQEDYERLRPM---SYPNTDCFLLCFSIGST---------SSYENILSKWYP 119
+ +WD GQ + LR + +TD L + + S +++L +
Sbjct: 63 KLNIWDVGGQ---KSLRSYWRNYFESTDG--LIWVVDSADRQRMQDCQRELQSLLVE--E 115
Query: 120 ELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEV-DLVSTSQGKKMRRKIKAAEYLECS 178
L +++ K DL + + + + +I+ CS
Sbjct: 116 RLA----GATLLIFANKQDLP------GALSCNAIQEALELDSIRSHHWRIQG-----CS 160
Query: 179 AKLNEGLDQVF 189
A E L
Sbjct: 161 AVTGEDLLPGI 171
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 33.8 bits (78), Expect = 0.019
Identities = 38/189 (20%), Positives = 62/189 (32%), Gaps = 55/189 (29%)
Query: 22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTI-----TVDNKTYDVTLW 76
K +++ VG GKT +L K + T P TI TV+ K T+W
Sbjct: 28 KQMRILMVGLDAAGKTTIL-----YKLKLGEIVTT---IP-TIGFNVETVEYKNICFTVW 78
Query: 77 DTAGQEDYERLRPM---SYPNTDCFLLCFSIGST---------SSYENILSKWYPELKHH 124
D GQ +++RP+ + NT L F + S + +L + EL+
Sbjct: 79 DVGGQ---DKIRPLWRHYFQNTQG--LIFVVDSNDRERVQESADELQKMLQE--DELR-- 129
Query: 125 CPKVPIILVGTKADLRSENKTIDKKKAAEV----DLVSTSQGKKMRRKIKAAEYLECSAK 180
+++ K D+ + +E+ L R A
Sbjct: 130 --DAVLLVFANKQDMP------NAMPVSELTDKLGLQHLRS-----RTWY---VQATCAT 173
Query: 181 LNEGLDQVF 189
GL
Sbjct: 174 QGTGLYDGL 182
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 33.7 bits (78), Expect = 0.019
Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 57/190 (30%)
Query: 22 KALKVTTVG-DGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTI-----TVDNKTYDVTL 75
+ +++ +G DG GKT +L + V T P TI TV K +
Sbjct: 6 REMRILILGLDG-AGKTTIL-----YRLQVGEVVTTI---P-TIGFNVETVTYKNLKFQV 55
Query: 76 WDTAGQEDYERLRPM---SYPNTDCFLLCFSIGST-------SSYE--NILSKWYPELKH 123
WD G +RP Y NTD + + + S S E +L + EL+
Sbjct: 56 WDLGGL---TSIRPYWRCYYSNTDA--VIYVVDSCDRDRIGISKSELVAMLEE--EELR- 107
Query: 124 HCPKVPIILVGTKADLRSENKTIDKKKAAEV----DLVSTSQGKKMRRKIKAAEYLECSA 179
K +++ K D+ ++E+ L + RK + + SA
Sbjct: 108 ---KAILVVFANKQDME------QAMTSSEMANSLGLPALKD-----RKWQ---IFKTSA 150
Query: 180 KLNEGLDQVF 189
GLD+
Sbjct: 151 TKGTGLDEAM 160
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 33.8 bits (78), Expect = 0.020
Identities = 41/190 (21%), Positives = 62/190 (32%), Gaps = 57/190 (30%)
Query: 22 KALKVTTVG-DGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTI-----TVDNKTYDVTL 75
+ KV VG D GKT +L +F + V P TI + +
Sbjct: 15 QEHKVIIVGLDN-AGKTTIL-----YQFSMNEVVHT---SP-TIGSNVEEIVINNTRFLM 64
Query: 76 WDTAGQEDYERLRPM---SYPNTDCFLLCFSIGST---------SSYENILSKWYPELKH 123
WD GQ E LR Y NT+ + + ST +L+ +L+
Sbjct: 65 WDIGGQ---ESLRSSWNTYYTNTEF--VIVVVDSTDRERISVTREELYKMLAH--EDLR- 116
Query: 124 HCPKVPIILVGTKADLRSENKTIDKKKAAEV----DLVSTSQGKKMRRKIKAAEYLECSA 179
K +++ K D++ + AE+ L S + C A
Sbjct: 117 ---KAGLLIFANKQDVK------ECMTVAEISQFLKLTSIKD-----HQWH---IQACCA 159
Query: 180 KLNEGLDQVF 189
EGL Q
Sbjct: 160 LTGEGLCQGL 169
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 34.4 bits (80), Expect = 0.020
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 17/83 (20%)
Query: 105 GSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK 164
T ++ L++ ELK P + V K D + + + A
Sbjct: 322 LGTERLDDELTEI-RELKAAHPAAKFLTVANKLDRAANADALIRAIADGTG--------- 371
Query: 165 MRRKIKAAEYLECSAKLNEGLDQ 187
E + SA +G+D
Sbjct: 372 -------TEVIGISALNGDGIDT 387
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 33.8 bits (77), Expect = 0.023
Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 3 SGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHT-ENKFPTDYVPTVFDNYP 61
SG + + + + L++ VG GK+ + F +
Sbjct: 9 SGRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKC 68
Query: 62 DTITVDNKTYDVTLWDTAG-----------QEDYERLRPMSYPNTDCFLLCFSIGSTSSY 110
+ + K ++ + DT G ++ R ++ P LL +G +
Sbjct: 69 EKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE 128
Query: 111 ENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDL 156
E+ ++ ++ + +IL+ T+ D + D + A D+
Sbjct: 129 EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDI 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 34.0 bits (78), Expect = 0.024
Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 22/139 (15%)
Query: 63 TITVDNKTYDVTLWDTAG-----------QEDYERLRPMSYPNTDCFLLCFSIGS---TS 108
+ T+ T + + DT G E + D L +
Sbjct: 78 SRTMGGFT--INIIDTPGLVEAGYVNHQALELIKGFLVNRTI--DVLLYVDRLDVYAVDE 133
Query: 109 SYENILSKWYPELKHHCPKVPIILVGTKAD-LRSENKTIDK--KKAAEVDLVSTSQGKKM 165
+ ++ + +LV T A + + + K ++ L + G KM
Sbjct: 134 LDKQVV-IAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKM 192
Query: 166 RRKIKAAEYLECSAKLNEG 184
R++ + N G
Sbjct: 193 RKQEFEDSAIAVVYAENSG 211
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 33.4 bits (77), Expect = 0.024
Identities = 41/190 (21%), Positives = 62/190 (32%), Gaps = 57/190 (30%)
Query: 22 KALKVTTVG-DGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTI-----TVDNKTYDVTL 75
+ KV VG D GKT +L +F + V P TI + +
Sbjct: 20 QEHKVIIVGLDN-AGKTTIL-----YQFSMNEVVHT---SP-TIGSNVEEIVINNTRFLM 69
Query: 76 WDTAGQEDYERLRPM---SYPNTDCFLLCFSIGST---------SSYENILSKWYPELKH 123
WD GQ E LR Y NT+ + + ST +L+ +L+
Sbjct: 70 WDIGGQ---ESLRSSWNTYYTNTEF--VIVVVDSTDRERISVTREELYKMLAH--EDLR- 121
Query: 124 HCPKVPIILVGTKADLRSENKTIDKKKAAEV----DLVSTSQGKKMRRKIKAAEYLECSA 179
K +++ K D++ + AE+ L S + C A
Sbjct: 122 ---KAGLLIFANKQDVK------ECMTVAEISQFLKLTSIKD-----HQWH---IQACCA 164
Query: 180 KLNEGLDQVF 189
EGL Q
Sbjct: 165 LTGEGLCQGL 174
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 33.3 bits (77), Expect = 0.025
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 20/83 (24%)
Query: 105 GSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK 164
G+T+ + W + K+PI +V KAD+ E + + +
Sbjct: 93 GTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHAL---------- 142
Query: 165 MRRKIKAAEYLECSAKLNEGLDQ 187
+ SA+ EG+D
Sbjct: 143 ----------IRLSARTGEGVDV 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.031
Identities = 41/188 (21%), Positives = 60/188 (31%), Gaps = 66/188 (35%)
Query: 26 VTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLW-DTAGQEDY 84
T G+V + T + F F + ITV + E
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESF--------FVSVRKAITV-------LFFIGVRCYE-- 312
Query: 85 ERLRPMSYPNTDCFLLCFSIGSTSSYEN-------ILS----------KWYPELKHHCP- 126
+YPNT L SI S EN +LS + + H P
Sbjct: 313 ------AYPNTS---LPPSI-LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 127 --KVPIILV---------GTKADLRSENKTIDKKKA-AEVDLVSTSQGK-KMR-RKIK-A 171
+V I LV G L N T+ K KA + +D Q + RK+K +
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD-----QSRIPFSERKLKFS 417
Query: 172 AEYLECSA 179
+L ++
Sbjct: 418 NRFLPVAS 425
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 32.8 bits (75), Expect = 0.038
Identities = 26/122 (21%), Positives = 37/122 (30%), Gaps = 30/122 (24%)
Query: 35 GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPM---- 90
GKT LL T + V + D VTL D G +LR
Sbjct: 60 GKTSLLTLLTTDSVRPT-VVSQEPL----SAADYDGSGVTLVDFPGH---VKLRYKLSDY 111
Query: 91 ---SYPNTDCFLLCFSIGSTSSYE----------NILSKWYPELKHHCPKVPIILVGTKA 137
L F + ST + +ILS E + I++ K+
Sbjct: 112 LKTRAKFVKG--LIFMVDSTVDPKKLTTTAEFLVDILS--ITESSCEN-GIDILIACNKS 166
Query: 138 DL 139
+L
Sbjct: 167 EL 168
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 33.2 bits (77), Expect = 0.044
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 15/70 (21%)
Query: 120 ELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179
LK KVPI+LVG K D + A K + AE SA
Sbjct: 110 ALKPLVGKVPILLVGNKLDA------AKYPEEAM---------KAYHELLPEAEPRMLSA 154
Query: 180 KLNEGLDQVF 189
+ ++
Sbjct: 155 LDERQVAELK 164
>1dfm_A Endonuclease bglii; restriction endonuclease, restriction enzyme,
protein-DNA complex, hydrolase/DNA complex; HET: DNA;
1.50A {Bacillus subtilis} SCOP: c.52.1.5 PDB: 1d2i_A*
1es8_A
Length = 223
Score = 32.4 bits (73), Expect = 0.058
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 106 STSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE-------------NKTIDKKKAA 152
S+ YE ++ +++ VPI LVG D ++ ++TI K+
Sbjct: 141 SSLYYEQAQNQLNSLAEYNVFDVPIRLVGLIEDFETDIDIVSTTYADKRYSRTITKRDTV 200
Query: 153 EVDLVSTSQGKKMRRK 168
+ ++ T+ RRK
Sbjct: 201 KGKVIDTNTPNTRRRK 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 32.6 bits (74), Expect = 0.079
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 19/107 (17%)
Query: 82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL-- 139
+D+ + + + I + + P L PI+LVG KADL
Sbjct: 59 DDFLSMLHRIGESKALVVNIVDI------FDFNGSFIPGLPRFAADNPILLVGNKADLLP 112
Query: 140 RSENKTIDKK-----------KAAEVDLVSTSQGKKMRRKIKAAEYL 175
RS + +V LVS ++G M + ++A
Sbjct: 113 RSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 32.0 bits (72), Expect = 0.091
Identities = 18/157 (11%), Positives = 45/157 (28%), Gaps = 14/157 (8%)
Query: 6 QTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHT-ENKFPTDYVPTVFDNYPDTI 64
++ ++ VG GK+ + + +F + T T
Sbjct: 4 HHHHSSGRENLYFQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG 63
Query: 65 TVDNKTYDVTLWDTAG------------QEDYERLRPMSYPNTDCFLLCFSIGSTSSYEN 112
+ V + DT E+ +S P LL +G ++ +
Sbjct: 64 SRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQ 123
Query: 113 ILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK 149
+ ++ +++V T+ + ++
Sbjct: 124 QAVRQVRDMFGEDVLKWMVIVFTRKE-DLAGGSLHDY 159
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 32.1 bits (74), Expect = 0.11
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 17/68 (25%)
Query: 120 ELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179
E+ P+ILV K DL + + + + +A
Sbjct: 323 EIYEQVKHRPLILVMNKIDLVEK-----------------QLITSLEYPENITQIVHTAA 365
Query: 180 KLNEGLDQ 187
+G+D
Sbjct: 366 AQKQGIDS 373
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 31.4 bits (72), Expect = 0.12
Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 61/192 (31%)
Query: 22 KALKVTTVG-DGMVGKTCLL-------ITHTENKFPTDYVPTVFDNYPDTITVDNKTYDV 73
+ +++ +G D GKT LL I+H PT N +V ++ + +
Sbjct: 15 QEVRILLLGLDN-AGKTTLLKQLASEDISHI--------TPTQGFN---IKSVQSQGFKL 62
Query: 74 TLWDTAGQEDYERLRPM---SYPNTDCFLLCFSIGST---------SSYENILSKWYPEL 121
+WD GQ ++RP + NTD L + I S +L + +L
Sbjct: 63 NVWDIGGQ---RKIRPYWRSYFENTDI--LIYVIDSADRKRFEETGQELTELLEE--EKL 115
Query: 122 KHHCPKVPIILVGTKADLRSENKTIDKKKAAEV----DLVSTSQGKKMRRKIKAAEYLEC 177
VP+++ K DL A+E+ +L + R + C
Sbjct: 116 S----CVPVLIFANKQDLL------TAAPASEIAEGLNLHTIRD-----RVWQ---IQSC 157
Query: 178 SAKLNEGLDQVF 189
SA EG+
Sbjct: 158 SALTGEGVQDGM 169
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 31.9 bits (72), Expect = 0.13
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 19/106 (17%)
Query: 81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL- 139
+D+ R+ + + I + W P L ++LVG KADL
Sbjct: 56 DDDFLRILNGIGKSDALVVKIVDI------FDFNGSWLPGLHRFVGNNKVLLVGNKADLI 109
Query: 140 -RSENKTIDKK-----------KAAEVDLVSTSQGKKMRRKIKAAE 173
+S K K +V L+S ++G+ + A E
Sbjct: 110 PKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIE 155
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 31.3 bits (71), Expect = 0.14
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 35 GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPM 90
GKT LL T + V + D VTL D G +LR
Sbjct: 24 GKTSLLTLLTTDSVRPT-VVSQEPL----SAADYDGSGVTLVDFPGH---VKLRYK 71
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 31.3 bits (71), Expect = 0.15
Identities = 8/77 (10%), Positives = 20/77 (25%), Gaps = 12/77 (15%)
Query: 112 NILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA 171
N+ I++ K D + + K ++ +
Sbjct: 131 NLFYSIKSVF----SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNP-------- 178
Query: 172 AEYLECSAKLNEGLDQV 188
++ S G++Q
Sbjct: 179 IKFSSFSTLTGVGVEQA 195
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 30.6 bits (70), Expect = 0.32
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 16/68 (23%)
Query: 120 ELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179
++ ++V K D+ + + K D ++ SA
Sbjct: 343 KILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTD----------------RHMVKISA 386
Query: 180 KLNEGLDQ 187
EGL++
Sbjct: 387 LKGEGLEK 394
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 30.2 bits (68), Expect = 0.41
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 3 SGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD 62
+ + K +++ VG GKT +L + T +PT+ N
Sbjct: 145 ESSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE- 202
Query: 63 TITVDNKTYDVTLWDTAGQEDYERLRPM---SYPNTDCFLLCFSIGST 107
TV+ K T+WD GQ +++RP+ + NT L F + S
Sbjct: 203 --TVEYKNISFTVWDVGGQ---DKIRPLWRHYFQNTQG--LIFVVDSN 243
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 29.5 bits (66), Expect = 0.70
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 65 TVDNKTYDVTLWDTAGQEDYERLRPM---SYPNTDCFLLCFSIGST 107
TV K +WD GQ +++RP+ Y T L F +
Sbjct: 360 TVTYKNVKFNVWDVGGQ---DKIRPLWRHYYTGTQG--LIFVVDCA 400
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 29.1 bits (66), Expect = 0.78
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 135 TKADLRSENKTIDKKKAAEVDL-VSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAV 193
ADL NK ID A D+ + K++ AE + S K EG D+V + +
Sbjct: 164 KTADLIVINK-IDLADAVGADIKKMENDAKRIN---PDAEVVLLSLKTMEGFDKV-LEFI 218
Query: 194 RSAVKK 199
+VK+
Sbjct: 219 EKSVKE 224
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex
I; NMR {Homo sapiens} SCOP: c.47.1.22
Length = 102
Score = 27.8 bits (62), Expect = 0.97
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 98 FLLCFSIGSTSSYENILSKWYPELKHHCPKVPIIL 132
LC + + + K Y ELK P +PI++
Sbjct: 24 IHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILI 58
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 28.0 bits (63), Expect = 1.7
Identities = 9/74 (12%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 127 KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLD 186
+P I+ K +DK K + + ++ ++ ++ SAK + ++
Sbjct: 122 DIPTIVAVNK---------LDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIE 172
Query: 187 QVFIAAVRSAVKKQ 200
++ + ++++
Sbjct: 173 RL-KNRIFEVIRER 185
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 28.3 bits (63), Expect = 1.8
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 23/85 (27%)
Query: 106 STSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM 165
++ + + E +P ++V K D+ E K++
Sbjct: 263 PLEEQIHLFEEVHGEF----KDLPFLVVINKIDVADEENI-----------------KRL 301
Query: 166 RRKIKAA--EYLECSAKLNEGLDQV 188
+ +K ++ SA G+D V
Sbjct: 302 EKFVKEKGLNPIKISALKGTGIDLV 326
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 27.8 bits (63), Expect = 2.1
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 127 KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLD 186
P+I+V K D I K + + + + E + SA LD
Sbjct: 122 NKPVIVVINKIDK------IGPAKNVLPLIDEIHK-----KHPELTEIVPISALKGANLD 170
Query: 187 QVF 189
++
Sbjct: 171 ELV 173
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 28.0 bits (63), Expect = 2.1
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 135 TKADLRSENKTIDKKKAAEVDL-VSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAV 193
ADL NK + +A D+ + K + A+ +E K +G ++ I +
Sbjct: 154 RVADLIVINK-VALAEAVGADVEKMKADAKLIN---PRAKIIEMDLKTGKGFEEW-IDFL 208
Query: 194 RSAVKKQDKS 203
R + S
Sbjct: 209 RGILNVHSDS 218
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate
esterase family 2, hydrolase; 2.00A {Cellvibrio
japonicus}
Length = 366
Score = 27.4 bits (60), Expect = 3.5
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 12/88 (13%)
Query: 54 PTVFDNYPDTITVDNKTYDVTLWD------TAGQEDYERLRPMSYPNTDCFLLCFSIGST 107
++ YP T+ ++ Y W G D+ S D
Sbjct: 213 KSLLSLYPYTLNNPDQLYHNKHWKPQVIVIGLGTNDF------STALNDNERWKTREALH 266
Query: 108 SSYENILSKWYPELKHHCPKVPIILVGT 135
+ Y K+ +L + + IL+ +
Sbjct: 267 ADYVANYVKFVKQLHSNNARAQFILMNS 294
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 27.5 bits (62), Expect = 3.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 17 SKSVHKALKVTTVGDGMVGKTC 38
+++ K K+ +G G VG T
Sbjct: 1 AETTVKPTKLAVIGAGAVGSTL 22
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 27.2 bits (61), Expect = 3.7
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 10 GGDKDVKSKSVHKALKVTTVGDGMVGKTC 38
G K + K+T VG G +G C
Sbjct: 1 GSSKSWANHENKTVNKITVVGGGELGIAC 29
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 27.3 bits (61), Expect = 3.8
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 25 KVTTVGDGMVGKTC 38
K+T VG VG
Sbjct: 23 KITVVGCDAVGMAD 36
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 26.8 bits (60), Expect = 4.1
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 127 KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLD 186
+P +V TK D ++ KK E +K+ K + S+ EG+
Sbjct: 133 NIPFTIVLTKMDKVKMSER--AKKLEEH--------RKVFSKYGEYTIIPTSSVTGEGIS 182
Query: 187 QV 188
++
Sbjct: 183 EL 184
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 27.1 bits (61), Expect = 4.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 25 KVTTVGDGMVGKTC 38
KV +G G VG +
Sbjct: 9 KVAIIGAGFVGASA 22
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability;
HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 27.1 bits (61), Expect = 4.5
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 25 KVTTVGDGMVGKTC 38
K+ VG G VG +
Sbjct: 2 KIGIVGLGRVGSST 15
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor
complex, fragment-based LEAD genera inhibitors; HET:
52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A*
4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A*
4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A*
1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Length = 331
Score = 27.1 bits (61), Expect = 4.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 25 KVTTVGDGMVGKTC 38
K+T VG G VG C
Sbjct: 21 KITVVGVGAVGMAC 34
>3ubq_A Hemagglutinin HA1; viral envelope protein, viral fusion protein,
protein-immune system complex; HET: NAG SIA GAL; 2.00A
{Influenza a virus} PDB: 3ubj_A* 3ubn_A* 3ube_A* 3lzg_A*
3ztn_A* 3al4_A* 3lyj_A* 3m6s_A* 4f3z_A* 3gbn_A* 3lzf_A*
3r2x_A* 4eef_A* 1ruy_H* 1rd8_A* 1rvt_H* 1rv0_H* 2wrg_H*
1ruz_H* 3hto_A* ...
Length = 329
Score = 27.0 bits (59), Expect = 4.9
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 89 PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK 127
P+ NT C +I ++ ++NI + CPK
Sbjct: 273 PVHDCNTTCQTPKGAINTSLPFQNIHPITIGK----CPK 307
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase;
HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 26.7 bits (60), Expect = 4.9
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 24 LKVTTVGDGMVGKTC 38
+K+ VG G VG T
Sbjct: 1 MKLGFVGAGRVGSTS 15
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 26.7 bits (60), Expect = 4.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 25 KVTTVGDGMVGKTC 38
KV VG GMVG
Sbjct: 2 KVGIVGSGMVGSAT 15
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 26.7 bits (60), Expect = 5.2
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 25 KVTTVGDGMVGKTC 38
+V +G G VG +
Sbjct: 8 RVVVIGAGFVGASY 21
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 26.7 bits (60), Expect = 5.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 19 SVHKALKVTTVGDGMVGKTC 38
+ K KV +G+G VG +
Sbjct: 2 NKFKGNKVVLIGNGAVGSSY 21
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 26.7 bits (60), Expect = 5.4
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 25 KVTTVGDGMVGKTC 38
KV +G G VG +
Sbjct: 7 KVALIGAGFVGSSY 20
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 26.7 bits (60), Expect = 5.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 24 LKVTTVGDGMVGKTC 38
+K+T +G G VG T
Sbjct: 1 MKITVIGAGNVGATT 15
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 26.7 bits (60), Expect = 5.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 25 KVTTVGDGMVGKTC 38
KV VGDG VG +
Sbjct: 11 KVILVGDGAVGSSY 24
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 26.8 bits (60), Expect = 5.9
Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 10/74 (13%)
Query: 128 VPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQ 187
PI++ NK IDK + + + + SA L+
Sbjct: 293 KPILVT--------LNK-IDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLEL 343
Query: 188 VFIAAVRSAVKKQD 201
+ +
Sbjct: 344 -LRDKIYQLATQLS 356
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 26.7 bits (60), Expect = 6.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 24 LKVTTVGDGMVGKTC 38
+KVT +G G VG T
Sbjct: 1 MKVTVIGAGNVGATV 15
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 26.4 bits (59), Expect = 6.4
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 128 VPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQ 187
+P+I++ TKAD + K K A V ++ E + S++ +G D+
Sbjct: 135 IPVIVIATKADKIPKGKW--DKHAKVV--------RQTLNIDPEDELILFSSETKKGKDE 184
Query: 188 V 188
Sbjct: 185 A 185
>2uy2_A Endochitinase; carbohydrate metabolism, polysaccharide degradation,
glycopr chitin-binding, chitin degradation, CAZY,
hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2uy3_A*
2uy4_A* 2uy5_A*
Length = 294
Score = 26.6 bits (58), Expect = 7.0
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 74 TLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSK 116
TLWDT G+ RP D F + Y + +K
Sbjct: 107 TLWDTFGEGTGASERPFDSAVVDGFDFDIENNNEVGYSALATK 149
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 26.3 bits (59), Expect = 7.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 25 KVTTVGDGMVGKTC 38
KV VGDG VG +
Sbjct: 7 KVVLVGDGAVGSSY 20
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB:
2d3b_A* 2d3c_A*
Length = 356
Score = 26.2 bits (58), Expect = 7.4
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 108 SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK 149
+ ++++ + I + G+ DLRS+ +T+
Sbjct: 2 ACLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGP 43
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 26.3 bits (59), Expect = 7.8
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 25 KVTTVGDGMVGKTC 38
KV VG G VG T
Sbjct: 2 KVGVVGTGFVGSTA 15
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 26.3 bits (59), Expect = 8.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 25 KVTTVGDGMVGKTC 38
K+ VG GM+G
Sbjct: 6 KIVLVGSGMIGGVM 19
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 26.4 bits (57), Expect = 8.9
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 121 LKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDL 156
+K KV I+ V KAD + + KK ++
Sbjct: 168 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEI 203
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 26.0 bits (58), Expect = 9.5
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 17/64 (26%)
Query: 127 KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY--LECSAKLNEG 184
++ ++V K DL E+ D +K E+ +++ + Y ++ SAK G
Sbjct: 115 ELETVMVINKMDLYDED---DLRKVREL--------EEIYSGL----YPIVKTSAKTGMG 159
Query: 185 LDQV 188
++++
Sbjct: 160 IEEL 163
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 26.0 bits (58), Expect = 9.5
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 25 KVTTVGDGMVGKTC 38
KV +G GM+G T
Sbjct: 11 KVAMIGSGMIGGTM 24
>3tl2_A Malate dehydrogenase; center for structural genomics of
infectious diseases, csgid dehydrogenase,
oxidoreductase, citric acid cycle; 1.70A {Bacillus
anthracis}
Length = 315
Score = 25.9 bits (58), Expect = 9.7
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 25 KVTTVGDGMVGKTC 38
KV+ +G G G T
Sbjct: 10 KVSVIGAGFTGATT 23
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 25.9 bits (58), Expect = 9.7
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 25 KVTTVGDGMVGKTC 38
K++ +G G +G T
Sbjct: 16 KISIIGAGQIGSTI 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.387
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,992,127
Number of extensions: 167575
Number of successful extensions: 793
Number of sequences better than 10.0: 1
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 169
Length of query: 205
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,216,824
Effective search space: 489151584
Effective search space used: 489151584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)