BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15717
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TBR6|PFD4_BOVIN Prefoldin subunit 4 OS=Bos taurus GN=PFDN4 PE=2 SV=1
Length = 134
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 47/62 (75%)
Query: 10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
G++F+ + +++ LEE+++N++ +I ++E + SI+ V++DLK LYAKFG++I LEA
Sbjct: 72 GDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEA 131
Query: 70 DD 71
D+
Sbjct: 132 DE 133
>sp|Q9NQP4|PFD4_HUMAN Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 SV=1
Length = 134
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 47/62 (75%)
Query: 10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
G++F+ + +++ LEE+++N++ +I ++E + SI+ V++DLK LYAKFG++I LEA
Sbjct: 72 GDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEA 131
Query: 70 DD 71
D+
Sbjct: 132 DE 133
>sp|Q9VRL3|PFD4_DROME Probable prefoldin subunit 4 OS=Drosophila melanogaster GN=CG10635
PE=3 SV=1
Length = 138
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
GE+F+ ++ L+E+++ + +IA +E IK M +LK HLY +FG++I LEA
Sbjct: 77 GEVFLSHKLEKTQDMLKETKEQVLKEIAGVEAKAKVIKAEMDELKAHLYQRFGSNISLEA 136
Query: 70 DD 71
+D
Sbjct: 137 ED 138
>sp|Q9M4B5|PFD4_ARATH Probable prefoldin subunit 4 OS=Arabidopsis thaliana GN=AIP3 PE=1
SV=3
Length = 129
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
GE+F + + + E +EE ++ + +EQ SI T M+ LK LYAKF + I LE
Sbjct: 69 GEVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAALKKVLYAKFKDSINLEE 128
Query: 70 D 70
D
Sbjct: 129 D 129
>sp|Q54TB7|PFD4_DICDI Probable prefoldin subunit 4 OS=Dictyostelium discoideum GN=pfdn4
PE=3 SV=1
Length = 132
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLE 68
GE F+++ K ++E +E+ ++ DI I+ ++ I +LK LYAKF N I LE
Sbjct: 73 GEAFLEVNKEDAESLIEKYINKLEEDIKKIDSDINDINEKHKELKVILYAKFKNSINLE 131
>sp|P53900|PFD4_YEAST Prefoldin subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=GIM3 PE=1 SV=1
Length = 129
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 9 AGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLE 68
G++F+ + + LE+ + + + I ++E I + + LK LYAKFG++I LE
Sbjct: 69 VGDLFIFMKQSKVTAQLEKDAERLDNKIETLEDKQRDIDSRLDALKAILYAKFGDNINLE 128
>sp|Q9M4C4|PFD4_AVEFA Probable prefoldin subunit 4 OS=Avena fatua GN=VIP3 PE=2 SV=1
Length = 126
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
GE+F + + E LE+ +++ + +E+ SI M++LK LY KF + I LE
Sbjct: 66 GEVFAHMPMDDVEARLEQMKEDAAKKLERLEEEKESILAQMAELKKILYGKFKDAINLEE 125
Query: 70 D 70
D
Sbjct: 126 D 126
>sp|Q8GUM2|HSP7I_ARATH Heat shock 70 kDa protein 9, mitochondrial OS=Arabidopsis thaliana
GN=HSP70-9 PE=1 SV=1
Length = 682
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 12/56 (21%)
Query: 22 EKSLEESRQNIKSDIAS-IEQTMSSIKTVMS-----DLKTHLYA------KFGNHI 65
EKSL E R+ I ++IAS IE +S ++T M+ D+K + A K G H+
Sbjct: 591 EKSLSEYREKIPAEIASEIETAVSDLRTAMAGEDVEDIKAKVEAANKAVSKIGEHM 646
>sp|A8X0Z1|PFD4_CAEBR Probable prefoldin subunit 4 OS=Caenorhabditis briggsae GN=pfd-4
PE=3 SV=1
Length = 126
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
G FV + + LE + + ++ +A + +I M +K LY KFG+ I L+A
Sbjct: 65 GSCFVHFNSDSLNEHLEAKKASTETVLAEKTNELETITAEMERIKKVLYGKFGDQINLDA 124
Query: 70 DD 71
++
Sbjct: 125 EE 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.324
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,986,145
Number of Sequences: 539616
Number of extensions: 636498
Number of successful extensions: 3042
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3019
Number of HSP's gapped (non-prelim): 27
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)