Query psy15717
Match_columns 72
No_of_seqs 100 out of 223
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 19:38:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_A Prefoldin; archaeal pro 99.5 4.3E-14 1.5E-18 85.5 7.8 60 3-62 48-107 (107)
2 2zqm_A Prefoldin beta subunit 99.5 2.5E-13 8.5E-18 83.1 8.4 61 3-63 53-113 (117)
3 1fxk_C Protein (prefoldin); ar 97.6 0.00032 1.1E-08 43.3 7.1 56 3-58 70-126 (133)
4 2zdi_C Prefoldin subunit alpha 97.5 0.00029 9.8E-09 44.7 6.5 56 3-58 80-136 (151)
5 3aei_A Prefoldin beta subunit 95.5 0.057 1.9E-06 31.9 6.0 50 8-57 49-98 (99)
6 1ik9_A DNA repair protein XRCC 93.9 0.4 1.4E-05 32.1 7.8 39 23-61 142-180 (213)
7 2yy0_A C-MYC-binding protein; 93.1 0.34 1.2E-05 25.9 5.3 31 27-57 19-49 (53)
8 1t2k_D Cyclic-AMP-dependent tr 92.1 0.62 2.1E-05 25.1 5.6 38 21-58 23-60 (61)
9 2pnv_A Small conductance calci 89.1 0.96 3.3E-05 23.3 4.3 33 20-52 9-41 (43)
10 1gmj_A ATPase inhibitor; coile 88.3 2.5 8.7E-05 24.6 6.3 27 29-55 53-79 (84)
11 2wt7_A Proto-oncogene protein 88.1 2 6.8E-05 23.2 6.4 38 22-59 25-62 (63)
12 3nmd_A CGMP dependent protein 88.0 2.4 8.2E-05 24.0 6.7 29 29-57 35-63 (72)
13 2l5g_B Putative uncharacterize 87.9 1.7 5.9E-05 22.3 5.6 29 27-55 9-37 (42)
14 1g6u_A Domain swapped dimer; d 87.5 1.5 5.1E-05 22.5 4.4 27 34-60 20-46 (48)
15 1ci6_A Transcription factor AT 86.2 2.7 9.2E-05 22.8 6.1 36 22-57 25-60 (63)
16 1jnm_A Proto-oncogene C-JUN; B 84.6 1.9 6.4E-05 23.2 4.1 37 22-58 24-60 (62)
17 1gmj_A ATPase inhibitor; coile 83.5 4.8 0.00016 23.4 6.5 37 21-57 38-74 (84)
18 1l8d_A DNA double-strand break 81.3 6 0.0002 22.9 6.5 36 22-57 5-40 (112)
19 3mq7_A Bone marrow stromal ant 81.3 4.8 0.00017 24.9 5.5 30 28-57 72-101 (121)
20 1zxa_A CGMP-dependent protein 81.2 4 0.00014 22.8 4.7 38 20-57 11-48 (67)
21 2wt7_B Transcription factor MA 80.4 6.7 0.00023 23.0 6.7 38 22-59 50-87 (90)
22 3viq_B Mating-type switching p 80.0 2.4 8.3E-05 24.7 3.6 28 30-57 4-31 (85)
23 2wuj_A Septum site-determining 79.8 3.9 0.00013 21.7 4.2 42 12-57 16-57 (57)
24 2lw1_A ABC transporter ATP-bin 79.1 3.6 0.00012 23.4 4.2 19 24-42 26-44 (89)
25 1t3j_A Mitofusin 1; coiled coi 77.8 8.7 0.0003 22.8 6.1 36 20-55 40-75 (96)
26 3l4q_C Phosphatidylinositol 3- 77.7 9.2 0.00031 24.8 6.3 35 25-59 108-142 (170)
27 3okg_A Restriction endonucleas 77.6 4.5 0.00015 27.4 5.0 52 9-60 355-406 (412)
28 3gpv_A Transcriptional regulat 77.2 6.3 0.00022 24.2 5.2 41 17-57 92-132 (148)
29 2y7c_A Type-1 restriction enzy 77.0 11 0.00039 25.7 7.0 52 9-60 365-416 (464)
30 3q0x_A Centriole protein; cent 76.6 15 0.0005 24.8 7.2 46 12-57 156-201 (228)
31 1hjb_A Ccaat/enhancer binding 75.9 7.7 0.00026 22.5 5.0 36 24-59 40-75 (87)
32 2l5g_B Putative uncharacterize 75.3 4.9 0.00017 20.6 3.5 25 32-56 7-31 (42)
33 2xi5_A RNA polymerase L, L-pro 75.2 1.3 4.6E-05 29.2 1.7 15 50-64 162-176 (184)
34 1hjb_A Ccaat/enhancer binding 74.6 10 0.00035 22.0 6.1 40 20-59 43-82 (87)
35 2zqm_A Prefoldin beta subunit 73.9 11 0.00036 21.8 6.0 34 19-52 76-109 (117)
36 3twe_A Alpha4H; unknown functi 73.4 5.3 0.00018 18.2 3.6 20 38-57 5-24 (27)
37 2ocy_A RAB guanine nucleotide 72.4 8.2 0.00028 24.7 4.9 39 20-58 108-146 (154)
38 3mq9_A Bone marrow stromal ant 72.4 13 0.00044 26.2 6.5 38 20-57 429-466 (471)
39 3gp4_A Transcriptional regulat 72.3 14 0.00048 22.5 6.2 40 17-56 78-117 (142)
40 1kd8_B GABH BLL, GCN4 acid bas 71.0 7.8 0.00027 19.1 4.3 27 31-57 5-31 (36)
41 2yy0_A C-MYC-binding protein; 70.7 9.6 0.00033 20.0 4.8 35 17-51 16-50 (53)
42 2zdi_C Prefoldin subunit alpha 70.4 7.3 0.00025 24.0 4.3 32 25-56 96-127 (151)
43 3iv1_A Tumor susceptibility ge 69.8 9.9 0.00034 21.7 4.4 36 20-55 32-67 (78)
44 4fla_A Regulation of nuclear P 69.4 11 0.00037 23.8 5.0 23 19-41 78-100 (152)
45 3v86_A De novo design helix; c 69.3 6.9 0.00024 17.8 3.3 24 31-54 4-27 (27)
46 2bni_A General control protein 69.3 8.2 0.00028 18.8 3.4 28 30-57 4-31 (34)
47 3okg_A Restriction endonucleas 68.9 24 0.0008 23.8 7.1 55 9-63 164-219 (412)
48 1gu4_A CAAT/enhancer binding p 68.9 12 0.0004 21.2 4.6 34 24-57 40-73 (78)
49 3nmd_A CGMP dependent protein 68.7 5.8 0.0002 22.4 3.2 31 26-56 39-69 (72)
50 1uo4_A General control protein 68.6 8.8 0.0003 18.7 4.2 28 30-57 4-31 (34)
51 1nkp_B MAX protein, MYC proto- 68.5 13 0.00044 20.6 6.0 30 28-57 48-77 (83)
52 2y7c_A Type-1 restriction enzy 68.4 24 0.00083 24.0 7.0 52 9-60 152-203 (464)
53 2dgc_A Protein (GCN4); basic d 67.9 12 0.00041 20.2 4.3 28 30-57 33-60 (63)
54 1r8e_A Multidrug-efflux transp 67.0 23 0.00079 23.0 6.7 40 18-57 77-116 (278)
55 1l8d_A DNA double-strand break 66.7 16 0.00055 21.0 6.6 39 20-58 64-102 (112)
56 1go4_E MAD1 (mitotic arrest de 66.5 10 0.00035 22.6 4.1 34 13-46 61-94 (100)
57 1lrz_A FEMA, factor essential 66.5 27 0.00094 24.5 7.1 30 13-42 240-269 (426)
58 4etp_A Kinesin-like protein KA 65.9 19 0.00066 25.7 6.3 29 28-56 11-39 (403)
59 3u06_A Protein claret segregat 65.7 17 0.00058 26.2 5.9 34 25-58 8-41 (412)
60 2oqq_A Transcription factor HY 65.6 12 0.0004 19.1 5.6 35 23-57 6-40 (42)
61 2xdj_A Uncharacterized protein 65.2 17 0.00058 20.8 6.7 41 23-63 23-66 (83)
62 2wq1_A General control protein 65.1 10 0.00036 18.3 4.9 28 30-57 3-30 (33)
63 1gd2_E Transcription factor PA 63.9 13 0.00045 20.6 4.1 8 39-46 55-62 (70)
64 1fxk_A Prefoldin; archaeal pro 63.7 18 0.00061 20.5 5.6 30 21-50 73-102 (107)
65 3hhm_B NISH2 P85alpha; PI3KCA, 63.3 24 0.00081 25.2 6.3 35 25-59 217-251 (373)
66 4dzn_A Coiled-coil peptide CC- 63.1 11 0.00037 17.9 4.5 27 30-56 5-31 (33)
67 3c3f_A Alpha/beta peptide with 63.0 12 0.0004 18.2 4.3 28 30-57 4-31 (34)
68 4dzo_A Mitotic spindle assembl 63.0 14 0.00049 22.5 4.5 20 48-67 29-48 (123)
69 2e7s_A RAB guanine nucleotide 62.0 3.2 0.00011 26.1 1.3 38 21-58 97-134 (135)
70 3iv1_A Tumor susceptibility ge 62.0 20 0.00068 20.5 6.4 33 23-55 42-74 (78)
71 1q08_A Zn(II)-responsive regul 62.0 18 0.00062 20.1 5.7 30 19-48 38-67 (99)
72 3hh0_A Transcriptional regulat 61.7 25 0.00084 21.5 5.5 36 18-53 78-113 (146)
73 3m48_A General control protein 61.7 12 0.00042 18.0 4.1 27 31-57 4-30 (33)
74 3okq_A BUD site selection prot 60.3 29 0.001 21.9 6.1 43 18-60 5-47 (141)
75 3a7o_A Autophagy protein 16; c 60.0 18 0.00062 20.5 4.2 30 34-63 18-47 (75)
76 1r8d_A Transcription activator 59.8 15 0.00053 21.0 4.1 26 22-47 77-102 (109)
77 3oa7_A Head morphogenesis prot 59.7 36 0.0012 22.7 7.1 47 18-64 28-74 (206)
78 1rtm_1 Mannose-binding protein 59.0 18 0.00062 21.3 4.4 26 32-57 2-27 (149)
79 2lw1_A ABC transporter ATP-bin 58.8 22 0.00076 20.0 4.6 25 27-51 22-46 (89)
80 1lwu_C Fibrinogen gamma chain; 58.7 29 0.00099 24.4 6.0 32 25-56 17-48 (323)
81 3a2a_A Voltage-gated hydrogen 58.6 20 0.00067 19.3 5.9 45 14-58 5-49 (58)
82 1kd8_A GABH AIV, GCN4 acid bas 58.5 15 0.00052 18.0 4.8 25 32-56 6-30 (36)
83 3mud_A DNA repair protein XRCC 58.0 36 0.0012 22.1 6.8 54 4-57 106-165 (175)
84 3trt_A Vimentin; cytoskeleton, 57.5 21 0.00072 19.4 6.4 40 18-57 26-65 (77)
85 3efg_A Protein SLYX homolog; x 57.4 20 0.0007 20.1 4.2 23 32-54 26-48 (78)
86 3he5_B Synzip2; heterodimeric 57.4 15 0.00051 19.0 3.2 22 22-43 26-47 (52)
87 1yf2_A Type I restriction-modi 56.7 41 0.0014 22.5 6.3 48 9-60 368-415 (425)
88 2ynz_A General control protein 56.5 17 0.00059 23.3 4.1 29 31-59 3-31 (154)
89 1nkp_B MAX protein, MYC proto- 56.0 20 0.00068 19.8 4.0 30 24-53 51-80 (83)
90 3da5_A Argonaute; PAZ domain, 56.0 5.4 0.00018 24.4 1.6 13 51-63 82-94 (128)
91 3c3g_A Alpha/beta peptide with 55.0 17 0.00058 17.5 4.9 27 31-57 4-30 (33)
92 3oja_B Anopheles plasmodium-re 54.8 46 0.0016 23.9 6.7 20 34-53 544-563 (597)
93 3htk_A Structural maintenance 54.2 21 0.00073 18.4 6.6 32 25-56 24-55 (60)
94 2r2v_A GCN4 leucine zipper; co 54.1 18 0.00062 17.6 4.9 28 30-57 4-31 (34)
95 1ezj_A Nucleocapsid phosphopro 54.0 30 0.001 20.8 4.7 29 32-61 64-92 (115)
96 1nlw_A MAD protein, MAX dimeri 53.0 28 0.00096 19.4 6.0 34 20-57 44-77 (80)
97 2oxj_A Hybrid alpha/beta pepti 52.7 19 0.00066 17.5 4.3 27 31-57 5-31 (34)
98 1t2k_D Cyclic-AMP-dependent tr 52.1 24 0.00083 18.5 5.2 26 31-56 26-51 (61)
99 3viq_B Mating-type switching p 52.1 21 0.00071 20.7 3.6 25 24-48 5-29 (85)
100 2z5i_A TM, general control pro 51.2 25 0.00085 18.3 6.4 38 24-61 9-46 (52)
101 2nov_A DNA topoisomerase 4 sub 50.0 49 0.0017 24.7 6.2 37 23-63 433-476 (496)
102 3u1c_A Tropomyosin alpha-1 cha 49.4 36 0.0012 19.7 6.6 33 25-57 42-74 (101)
103 1fxk_C Protein (prefoldin); ar 49.3 39 0.0013 20.0 6.0 30 26-55 7-36 (133)
104 1zme_C Proline utilization tra 48.0 28 0.00096 18.0 3.7 13 32-44 49-61 (70)
105 1uii_A Geminin; human, DNA rep 47.9 38 0.0013 19.5 5.1 26 30-55 49-74 (83)
106 3mq7_A Bone marrow stromal ant 47.5 47 0.0016 20.4 6.4 30 23-52 60-89 (121)
107 2jo7_A Glycosylphosphatidylino 47.3 22 0.00076 23.8 3.6 28 33-63 196-223 (224)
108 1ydx_A Type I restriction enzy 47.3 63 0.0022 21.8 6.4 55 9-67 343-399 (406)
109 2vz4_A Tipal, HTH-type transcr 47.2 18 0.00061 20.8 2.9 25 23-47 77-101 (108)
110 1x8y_A Lamin A/C; structural p 46.9 37 0.0013 19.1 5.6 35 18-52 19-53 (86)
111 2ve7_A Kinetochore protein HEC 46.4 68 0.0023 22.1 6.2 28 28-55 186-213 (315)
112 1q1v_A DEK protein; winged-hel 46.4 7.2 0.00025 21.6 1.0 36 32-68 17-52 (70)
113 2v71_A Nuclear distribution pr 45.9 60 0.0021 21.2 5.8 13 39-51 68-80 (189)
114 1nkp_A C-MYC, MYC proto-oncoge 45.7 40 0.0014 19.1 4.7 34 20-53 49-85 (88)
115 1d7m_A Cortexillin I; coiled-c 45.7 45 0.0015 19.7 6.3 37 21-57 19-55 (101)
116 3ilw_A DNA gyrase subunit A; D 45.4 68 0.0023 23.8 6.3 40 24-63 420-462 (470)
117 3rvy_A ION transport protein; 45.3 3.6 0.00012 27.3 -0.4 26 34-59 256-281 (285)
118 3m9b_A Proteasome-associated A 45.2 34 0.0012 23.5 4.4 34 24-57 58-91 (251)
119 1r6f_A Virulence-associated V 44.7 65 0.0022 22.7 5.8 39 29-67 128-171 (310)
120 3oja_B Anopheles plasmodium-re 44.6 84 0.0029 22.5 6.8 34 24-57 541-574 (597)
121 3mq9_A Bone marrow stromal ant 44.6 61 0.0021 22.7 5.9 28 27-54 443-470 (471)
122 3rrk_A V-type ATPase 116 kDa s 44.5 68 0.0023 21.7 6.0 28 29-56 101-128 (357)
123 1go4_E MAD1 (mitotic arrest de 44.1 48 0.0017 19.6 5.3 30 28-57 13-42 (100)
124 2aze_B Transcription factor E2 44.1 48 0.0016 19.5 4.5 23 31-53 10-32 (106)
125 2zvf_A Alanyl-tRNA synthetase; 43.9 41 0.0014 20.4 4.4 21 32-52 37-57 (171)
126 4e61_A Protein BIM1; EB1-like 43.7 51 0.0017 19.7 5.1 24 31-54 15-38 (106)
127 1zvu_A Topoisomerase IV subuni 43.5 69 0.0024 25.0 6.3 40 24-63 406-448 (716)
128 2wg5_A General control protein 43.5 43 0.0015 19.6 4.2 24 31-54 11-34 (109)
129 1ci6_A Transcription factor AT 43.4 37 0.0013 18.0 5.8 27 24-50 34-60 (63)
130 3vkg_A Dynein heavy chain, cyt 43.3 67 0.0023 29.3 6.8 42 16-57 2010-2051(3245)
131 1jcd_A Major outer membrane li 43.2 36 0.0012 17.8 5.6 29 30-58 7-35 (52)
132 2yny_A General control protein 43.1 53 0.0018 19.7 6.4 41 16-56 65-105 (106)
133 3m91_A Proteasome-associated A 42.7 36 0.0012 17.7 5.6 33 25-57 14-46 (51)
134 1q06_A Transcriptional regulat 42.7 52 0.0018 19.6 5.7 27 31-57 83-109 (135)
135 3kin_B Kinesin heavy chain; mo 42.6 44 0.0015 19.8 4.2 30 25-54 87-116 (117)
136 3qao_A LMO0526 protein, MERR-l 42.0 37 0.0013 22.5 4.2 36 20-55 76-111 (249)
137 2ve7_A Kinetochore protein HEC 41.7 39 0.0013 23.3 4.4 23 35-57 186-208 (315)
138 2xus_A Breast cancer metastasi 41.2 33 0.0011 17.9 3.0 18 42-59 14-31 (49)
139 1gk4_A Vimentin; intermediate 41.2 46 0.0016 18.5 5.7 34 19-52 18-51 (84)
140 3lpx_A GYRA, DNA gyrase, A sub 41.1 86 0.0029 23.5 6.3 56 14-69 418-495 (500)
141 1lwu_B Fibrinogen beta chain; 40.9 47 0.0016 23.3 4.7 22 36-57 30-51 (323)
142 2k48_A Nucleoprotein; viral pr 40.8 52 0.0018 19.8 4.2 20 38-57 79-98 (107)
143 3gnl_A Uncharacterized protein 40.8 66 0.0023 21.4 5.3 51 7-57 175-235 (244)
144 3ci9_A Heat shock factor-bindi 40.2 39 0.0013 17.4 4.9 35 20-54 10-44 (48)
145 2iw5_B Protein corest, REST co 40.2 59 0.002 22.1 4.9 29 29-57 88-116 (235)
146 2yo2_A General control protein 39.6 45 0.0015 21.6 4.1 29 31-59 3-31 (170)
147 3he4_A Synzip6; heterodimeric 39.3 42 0.0014 17.5 4.9 31 17-47 21-51 (56)
148 2aze_A Transcription factor DP 39.0 74 0.0025 20.3 6.0 34 23-56 8-41 (155)
149 2p22_A Suppressor protein STP2 38.9 77 0.0026 20.4 5.5 36 20-55 49-84 (174)
150 2wt7_A Proto-oncogene protein 38.6 45 0.0015 17.6 5.8 23 24-46 34-56 (63)
151 2ic6_A Nucleocapsid protein; h 38.5 55 0.0019 18.6 4.2 21 37-57 48-68 (78)
152 1fzc_C Fibrin; blood coagulati 37.5 18 0.00061 25.5 2.1 21 34-54 18-38 (319)
153 2no2_A HIP-I, huntingtin-inter 37.4 64 0.0022 19.0 6.4 43 20-62 22-68 (107)
154 2inr_A DNA topoisomerase 4 sub 37.1 1.1E+02 0.0037 23.0 6.3 37 23-63 457-500 (514)
155 3fpp_A Macrolide-specific effl 37.0 90 0.0031 20.7 5.8 50 6-55 52-104 (341)
156 2xcs_B DNA gyrase subunit B, D 36.8 1E+02 0.0035 24.0 6.3 37 23-63 640-683 (692)
157 2r32_A GCN4-PII/tumor necrosis 36.7 28 0.00097 22.4 2.8 40 24-63 11-53 (166)
158 1q08_A Zn(II)-responsive regul 36.6 54 0.0019 18.0 6.8 42 16-57 17-69 (99)
159 3cve_A Homer protein homolog 1 36.2 57 0.002 18.2 6.5 32 25-56 12-43 (72)
160 1wlq_A Geminin; coiled-coil; 2 35.9 63 0.0022 18.6 4.6 25 31-55 42-66 (83)
161 2y3w_A SAS6, spindle assembly 35.5 81 0.0028 20.1 4.9 39 12-50 143-181 (182)
162 3qh9_A Liprin-beta-2; coiled-c 35.5 64 0.0022 18.5 4.9 26 32-57 52-77 (81)
163 2xv5_A Lamin-A/C; structural p 35.5 58 0.002 18.0 4.8 25 26-50 4-28 (74)
164 4etp_A Kinesin-like protein KA 35.4 1.2E+02 0.0041 21.6 7.1 40 22-61 12-54 (403)
165 2qyw_A Vesicle transport throu 35.1 66 0.0023 18.5 6.1 20 38-57 82-101 (102)
166 3u59_A Tropomyosin beta chain; 34.9 65 0.0022 18.4 6.6 26 29-54 46-71 (101)
167 4emc_A Monopolin complex subun 34.7 97 0.0033 20.4 6.0 20 31-50 38-57 (190)
168 2b9c_A Striated-muscle alpha t 34.4 60 0.002 20.2 4.0 23 31-53 98-120 (147)
169 3rrk_A V-type ATPase 116 kDa s 34.3 1.1E+02 0.0037 20.7 6.8 31 19-49 225-255 (357)
170 1am9_A Srebp-1A, protein (ster 34.3 61 0.0021 17.9 5.6 24 31-54 54-77 (82)
171 3mov_A Lamin-B1; LMNB1, B-type 34.2 69 0.0023 18.5 5.5 32 20-51 30-61 (95)
172 1buu_A Protein (mannose-bindin 34.0 77 0.0026 19.0 5.4 25 32-56 21-45 (168)
173 1zl8_A LIN-7; heterodimer, alp 33.9 28 0.00094 18.5 2.0 41 25-65 5-45 (53)
174 3lec_A NADB-rossmann superfami 33.7 52 0.0018 21.7 3.8 51 7-57 173-227 (230)
175 2v66_B Nuclear distribution pr 33.7 78 0.0027 19.0 6.7 38 19-56 20-57 (111)
176 2cly_B ATP synthase D chain, m 33.6 58 0.002 20.5 3.9 28 20-47 95-122 (160)
177 2eqb_B RAB guanine nucleotide 33.6 75 0.0026 18.7 6.1 18 41-58 47-64 (97)
178 3mtu_E Head morphogenesis prot 33.5 68 0.0023 18.2 6.5 39 19-57 29-67 (77)
179 3na7_A HP0958; flagellar bioge 33.2 1E+02 0.0035 20.2 7.0 29 30-58 56-84 (256)
180 1vcs_A Vesicle transport throu 33.2 71 0.0024 18.4 4.6 20 38-57 71-90 (102)
181 3kr9_A SAM-dependent methyltra 33.1 61 0.0021 21.2 4.1 51 7-57 167-221 (225)
182 2e50_A Protein SET; histone ch 32.7 1.1E+02 0.0036 20.2 6.9 31 30-60 36-70 (225)
183 3k29_A Putative uncharacterize 32.7 1E+02 0.0035 19.9 6.7 38 21-58 28-65 (169)
184 1joc_A EEA1, early endosomal a 32.3 81 0.0028 18.7 5.6 29 26-54 17-45 (125)
185 1ic2_A Tropomyosin alpha chain 32.3 66 0.0023 17.7 6.6 14 36-49 50-63 (81)
186 1ydx_A Type I restriction enzy 31.9 1.2E+02 0.004 20.4 6.3 48 9-60 155-203 (406)
187 1lwu_C Fibrinogen gamma chain; 31.8 1.3E+02 0.0045 21.0 6.1 32 25-56 24-55 (323)
188 3gpv_A Transcriptional regulat 31.7 87 0.003 18.9 6.8 41 16-56 74-124 (148)
189 2jo8_A Serine/threonine-protei 31.5 60 0.0021 17.0 5.2 32 16-47 10-41 (51)
190 4h22_A Leucine-rich repeat fli 31.4 85 0.0029 18.7 6.2 34 24-57 20-53 (103)
191 2p22_C Protein SRN2; endosome, 31.4 1.1E+02 0.0037 19.8 6.9 35 23-57 86-120 (192)
192 1r8e_A Multidrug-efflux transp 31.3 1.1E+02 0.0036 19.7 6.3 42 16-57 64-109 (278)
193 2v71_A Nuclear distribution pr 31.0 1.1E+02 0.0038 19.9 7.0 34 23-56 45-78 (189)
194 1lrz_A FEMA, factor essential 31.0 1.2E+02 0.0042 21.1 5.6 16 31-46 251-266 (426)
195 2wvr_A Geminin; DNA replicatio 30.9 1.2E+02 0.0039 20.3 5.1 25 31-55 119-143 (209)
196 1yf2_A Type I restriction-modi 30.9 1.2E+02 0.004 20.1 6.7 47 9-59 158-204 (425)
197 1m1j_C Fibrinogen gamma chain; 30.6 1.4E+02 0.0048 21.5 6.0 27 31-57 102-128 (409)
198 2q12_A DIP13 alpha, DCC-intera 30.5 66 0.0022 20.9 3.9 46 13-58 210-255 (265)
199 3pbf_A Pulmonary surfactant-as 30.5 47 0.0016 19.2 3.0 20 38-57 6-25 (148)
200 4dyl_A Tyrosine-protein kinase 30.4 1.4E+02 0.0048 20.9 6.5 39 20-58 302-340 (406)
201 2ixo_A Serine/threonine-protei 30.4 40 0.0014 23.8 2.9 23 47-69 122-144 (323)
202 2ke4_A CDC42-interacting prote 30.3 83 0.0028 18.3 5.3 37 10-46 5-41 (98)
203 4dfk_A DNA polymerase I, therm 30.2 97 0.0033 22.9 5.2 30 39-68 164-193 (540)
204 3q0x_A Centriole protein; cent 30.2 1.2E+02 0.0043 20.2 5.8 33 24-56 182-214 (228)
205 1nfn_A Apolipoprotein E3; lipi 30.0 1.1E+02 0.0037 19.5 5.4 10 55-64 120-129 (191)
206 3m9b_A Proteasome-associated A 29.8 91 0.0031 21.3 4.6 30 25-54 66-95 (251)
207 2fxo_A Myosin heavy chain, car 29.7 92 0.0031 18.5 6.7 24 22-45 71-94 (129)
208 3pv8_A DNA polymerase I; DNA p 29.4 73 0.0025 23.9 4.4 30 39-68 216-245 (592)
209 4fi5_A Nucleoprotein; structur 29.4 98 0.0033 18.8 4.2 21 38-58 66-86 (113)
210 2ic9_A Nucleocapsid protein; h 29.0 92 0.0031 18.3 4.2 18 40-57 51-68 (96)
211 3zwh_Q Myosin-9; Ca-binding pr 29.0 18 0.00062 18.5 0.7 27 33-59 5-31 (45)
212 2hy6_A General control protein 28.9 55 0.0019 15.8 4.8 27 31-57 5-31 (34)
213 3ra3_B P2F; coiled coil domain 28.7 48 0.0017 15.0 3.3 22 24-45 4-25 (28)
214 4g1a_A AQ-C16C19 peptide; heli 28.6 52 0.0018 15.3 2.4 24 30-53 3-26 (32)
215 1yhn_B RILP, RAB interacting l 28.3 50 0.0017 18.1 2.5 17 42-58 4-20 (65)
216 3ni0_A Bone marrow stromal ant 28.3 96 0.0033 18.3 6.2 33 22-54 52-87 (99)
217 1yke_B RNA polymerase II holoe 28.1 1.1E+02 0.0038 19.0 5.2 42 22-63 87-128 (151)
218 3lss_A Seryl-tRNA synthetase; 27.6 1.1E+02 0.0036 22.7 4.9 26 36-61 113-138 (484)
219 2ixn_A Serine/threonine-protei 27.6 51 0.0018 23.1 3.1 24 46-69 108-131 (310)
220 3gp4_A Transcriptional regulat 27.6 1E+02 0.0036 18.5 6.8 26 30-55 84-109 (142)
221 2l5g_A GPS2 protein, G protein 27.5 63 0.0022 15.9 4.1 19 31-49 12-30 (38)
222 1wt6_A Myotonin-protein kinase 27.4 92 0.0031 17.8 6.0 25 35-59 46-70 (81)
223 3cvf_A Homer-3, homer protein 27.3 89 0.0031 17.6 6.6 32 25-56 18-49 (79)
224 1zhc_A Hypothetical protein HP 27.2 69 0.0024 17.6 3.1 19 24-42 21-39 (76)
225 1ykh_B RNA polymerase II holoe 27.2 1.1E+02 0.0037 18.5 5.4 42 22-63 87-128 (132)
226 3azd_A Short alpha-tropomyosin 27.1 21 0.00071 17.3 0.7 28 30-57 7-34 (37)
227 2ve7_C Kinetochore protein NUF 27.0 23 0.00079 23.8 1.2 22 32-53 153-174 (250)
228 3ghg_C Fibrinogen gamma chain; 26.9 1.8E+02 0.0063 21.1 6.1 34 25-58 96-129 (411)
229 2zhg_A Redox-sensitive transcr 26.9 1.1E+02 0.0038 18.6 5.0 26 21-46 91-116 (154)
230 2rkh_A Putative APHA-like tran 26.8 84 0.0029 19.9 3.8 32 15-46 117-148 (180)
231 3oja_A Leucine-rich immune mol 26.6 1.7E+02 0.0057 20.5 6.7 28 27-54 449-476 (487)
232 2kj6_A Tubulin folding cofacto 26.1 39 0.0013 19.3 1.9 13 50-62 39-51 (97)
233 1dh3_A Transcription factor CR 26.0 76 0.0026 16.4 4.8 25 30-54 25-49 (55)
234 1zav_U 50S ribosomal protein L 25.9 54 0.0019 15.1 2.1 16 47-62 15-30 (30)
235 1ytz_T Troponin T; muscle, THI 25.9 1.1E+02 0.0037 18.1 4.2 46 16-61 42-92 (107)
236 1ud0_A HSC70, 70 kDa heat-shoc 25.6 97 0.0033 17.5 5.9 23 37-59 57-79 (113)
237 3tpd_A Serine/threonine-protei 25.3 1.8E+02 0.0061 20.4 6.4 49 15-63 382-439 (440)
238 1i1r_B Viral IL-6; cytokine/re 24.9 1.1E+02 0.0037 19.8 4.1 27 37-63 10-36 (181)
239 3fav_A ESAT-6-like protein ESX 24.9 93 0.0032 17.0 4.8 45 22-66 56-100 (101)
240 3pv8_A DNA polymerase I; DNA p 24.8 1.2E+02 0.004 22.8 4.8 39 25-63 216-260 (592)
241 2ibl_A Fibritin; foldon, trime 24.8 1.2E+02 0.0041 18.7 4.1 46 19-64 56-101 (130)
242 1u7l_A Vacuolar ATP synthase s 24.8 1.8E+02 0.0062 20.9 5.6 35 25-59 127-161 (392)
243 1fzc_C Fibrin; blood coagulati 24.8 1.4E+02 0.0048 20.8 4.9 31 26-56 17-47 (319)
244 3tnu_A Keratin, type I cytoske 24.7 1.2E+02 0.004 18.1 5.9 30 22-51 72-101 (131)
245 1alu_A Interleukin-6; cytokine 24.4 1.1E+02 0.0038 19.8 4.1 27 37-63 25-51 (186)
246 1bb1_B Designed, thermostable 24.3 68 0.0023 15.3 4.2 24 31-54 6-29 (36)
247 3csx_A Putative uncharacterize 24.3 62 0.0021 18.5 2.5 26 28-53 16-41 (81)
248 3w03_C DNA repair protein XRCC 24.3 1.5E+02 0.0051 19.2 5.4 27 24-50 156-182 (184)
249 3tnu_B Keratin, type II cytosk 24.3 1.2E+02 0.004 18.0 5.7 25 26-50 74-98 (129)
250 2xkj_E Topoisomerase IV; type 24.0 2.2E+02 0.0077 22.4 6.3 17 25-41 701-717 (767)
251 4dfk_A DNA polymerase I, therm 23.9 1.3E+02 0.0044 22.3 4.8 40 24-63 163-208 (540)
252 1wjn_A Tubulin-folding protein 23.6 37 0.0013 18.8 1.5 13 50-62 35-47 (97)
253 3lof_A Heat shock 70 kDa prote 23.5 1.1E+02 0.0038 17.3 6.0 25 36-60 61-85 (113)
254 1wle_A Seryl-tRNA synthetase; 23.4 2.2E+02 0.0077 20.9 6.9 36 31-66 120-155 (501)
255 2kfn_A Klenow fragment of DNA 23.4 1.3E+02 0.0044 22.3 4.8 33 37-69 227-259 (605)
256 2xkj_E Topoisomerase IV; type 23.4 1E+02 0.0034 24.4 4.3 40 15-54 676-716 (767)
257 1j1d_B Troponin T, TNT; THIN f 23.3 1.2E+02 0.0041 17.9 3.8 23 39-61 68-92 (106)
258 3onj_A T-snare VTI1; helix, HA 22.9 1.1E+02 0.0039 17.3 6.1 18 40-57 71-89 (97)
259 3ghg_A Fibrinogen alpha chain; 22.8 2.6E+02 0.0088 21.3 6.8 26 34-59 131-156 (562)
260 2akf_A Coronin-1A; coiled coil 22.6 73 0.0025 14.9 4.8 20 25-44 4-23 (32)
261 3vmx_A Voltage-gated hydrogen 22.5 92 0.0031 16.1 6.6 38 22-59 6-43 (48)
262 4dzo_A Mitotic spindle assembl 22.3 1.4E+02 0.0046 18.0 5.7 26 34-59 4-29 (123)
263 3ku8_A GYRA14, DNA gyrase subu 22.3 66 0.0022 20.3 2.6 45 13-57 106-151 (156)
264 3r4h_A Coiled coil helix CC-TE 22.3 75 0.0025 15.0 4.2 17 39-55 7-23 (34)
265 3rmi_A Chorismate mutase prote 22.3 1.3E+02 0.0043 17.6 4.8 29 27-55 19-47 (114)
266 3u06_A Protein claret segregat 22.2 1.7E+02 0.006 20.8 5.1 43 18-60 8-53 (412)
267 3e98_A GAF domain of unknown f 22.0 1.5E+02 0.0051 19.6 4.5 34 15-48 60-93 (252)
268 1a92_A Delta antigen; leucine 22.0 96 0.0033 16.1 3.4 18 24-41 18-35 (50)
269 4b6w_A Tubulin-specific chaper 22.0 45 0.0015 18.5 1.6 15 50-64 27-41 (86)
270 3b5n_C Protein transport prote 21.8 1.1E+02 0.0037 16.7 5.1 27 30-56 43-69 (70)
271 1t98_A KICB protein, chromosom 21.6 1.7E+02 0.0057 20.3 4.7 54 4-59 159-224 (287)
272 3ilw_A DNA gyrase subunit A; D 21.5 1.1E+02 0.0036 22.8 3.9 42 16-57 397-439 (470)
273 1hlo_A Protein (transcription 21.5 99 0.0034 16.8 3.0 15 31-45 61-75 (80)
274 3kyp_A Pfnaps, nucleosome asse 21.5 1.7E+02 0.0057 18.7 6.4 19 42-60 22-40 (193)
275 4ghu_A TNF receptor-associated 21.4 1.6E+02 0.0055 18.5 4.9 29 25-53 5-33 (198)
276 2p32_A Heat shock 70 kDa prote 21.2 1.3E+02 0.0044 17.3 5.4 13 44-56 71-83 (120)
277 2er8_A Regulatory protein Leu3 21.0 56 0.0019 16.9 1.8 13 31-43 53-65 (72)
278 2krx_A ASL3597 protein; struct 21.0 93 0.0032 18.2 2.9 19 1-20 1-19 (94)
279 2ixm_A Serine/threonine-protei 20.9 49 0.0017 23.1 1.9 23 47-69 110-132 (303)
280 3tl4_X Glutaminyl-tRNA synthet 20.8 1.8E+02 0.0061 18.7 5.3 40 14-55 115-154 (187)
281 2l81_A Enhancer of filamentati 20.6 1.3E+02 0.0045 19.4 3.8 28 14-41 15-42 (176)
282 1v6e_A Cytoskeleton-associated 20.5 58 0.002 18.0 1.9 13 50-62 31-43 (95)
283 2vgl_A Adaptor protein complex 20.4 1.9E+02 0.0064 21.3 5.1 35 26-60 27-66 (621)
284 1ses_A Seryl-tRNA synthetase; 20.4 2.4E+02 0.0081 20.1 6.8 34 30-63 67-100 (421)
285 2inr_A DNA topoisomerase 4 sub 20.4 1.1E+02 0.0039 22.9 3.9 42 16-57 435-477 (514)
286 4dk0_A Putative MACA; alpha-ha 20.3 1.5E+02 0.0051 19.7 4.3 25 6-30 53-77 (369)
287 1dd4_C 50S ribosomal protein L 20.3 76 0.0026 15.6 2.1 17 48-64 16-32 (40)
288 1gax_A Valrs, valyl-tRNA synth 20.3 2.4E+02 0.0082 22.1 5.9 29 17-45 797-825 (862)
289 1wle_A Seryl-tRNA synthetase; 20.1 2.1E+02 0.0072 21.1 5.3 20 31-50 127-146 (501)
No 1
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=99.53 E-value=4.3e-14 Score=85.50 Aligned_cols=60 Identities=12% Similarity=0.256 Sum_probs=58.4
Q ss_pred cccccccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy15717 3 RVERNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFG 62 (72)
Q Consensus 3 ~~v~y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG 62 (72)
.+|++.||.|||+.|.++|.+.|++.++.++.+|+.|+.+++.+..+|.+||..||++||
T Consensus 48 ~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~~ 107 (107)
T 1fxk_A 48 AEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK 107 (107)
T ss_dssp CCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999999999999999999999999996
No 2
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=99.47 E-value=2.5e-13 Score=83.11 Aligned_cols=61 Identities=13% Similarity=0.276 Sum_probs=59.3
Q ss_pred cccccccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15717 3 RVERNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGN 63 (72)
Q Consensus 3 ~~v~y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~ 63 (72)
.+|++.||.|||+.|.++|.+.|+..++.++.+|+.|+.+++.+..+|.+||..||++||.
T Consensus 53 ~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 53 AVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp CCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4689999999999999999999999999999999999999999999999999999999986
No 3
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=97.59 E-value=0.00032 Score=43.34 Aligned_cols=56 Identities=11% Similarity=0.218 Sum_probs=50.3
Q ss_pred cccccccc-cceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 3 RVERNGAG-EIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 3 ~~v~y~iG-e~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
++|..-|| ..||..+.++|.+.|++..+.++..++.++..+..+..++..+-..|=
T Consensus 70 ~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 70 SEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777899 599999999999999999999999999999999999999988877653
No 4
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=97.54 E-value=0.00029 Score=44.65 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=49.4
Q ss_pred cccccccc-cceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 3 RVERNGAG-EIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 3 ~~v~y~iG-e~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
++|..-|| .+||..+.++|.+.|++..+.++..++.++..+..+..++..+...|=
T Consensus 80 ~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 80 NNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788 899999999999999999999999999999999999998888877653
No 5
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=95.49 E-value=0.057 Score=31.88 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=43.8
Q ss_pred ccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 8 GAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 8 ~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.+.|..|.++.++|-+.+|...-..+.+|++|...-++|-.+++.|.+-|
T Consensus 49 af~dllveitkdeaiehier~rl~ykreie~l~~~ekeime~ls~l~~pl 98 (99)
T 3aei_A 49 AFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEIMEELSKLRAPL 98 (99)
T ss_dssp EETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 48899999999999999999999999999999999999999999887644
No 6
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=93.90 E-value=0.4 Score=32.10 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15717 23 KSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKF 61 (72)
Q Consensus 23 e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakF 61 (72)
..|.+....++..++++.++++.+...-.++=..||+||
T Consensus 142 ~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF 180 (213)
T 1ik9_A 142 EHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRF 180 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555567888888888889999999999999999999
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=93.10 E-value=0.34 Score=25.88 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 27 ESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 27 ~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.+.+.++.+++.|+.++..+..+..+|++.|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888888888888888765
No 8
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=92.08 E-value=0.62 Score=25.06 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 21 SEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 21 a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
-...|+...+.+..+...|.+++..+..+...||..|-
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678888888999999999999999999999998774
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=89.06 E-value=0.96 Score=23.27 Aligned_cols=33 Identities=12% Similarity=0.304 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSD 52 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~e 52 (72)
+...-+...++.++++|..|+.+++.+...+..
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556677778888888888888888776653
No 10
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=88.28 E-value=2.5 Score=24.64 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 29 RQNIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 29 ke~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
...-.++|+.|+..++.+...+.+||.
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445555555555556666666554
No 11
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=88.13 E-value=2 Score=23.23 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
...|+...+.+..+-..|..++..+..+...||..|-+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888888888888888887753
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.98 E-value=2.4 Score=24.05 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 29 RQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 29 ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
....+..|..++.++.+....+.+|+.+|
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999987
No 13
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=87.86 E-value=1.7 Score=22.27 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 27 ESRQNIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 27 ~~ke~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
+...+++.+|++.++++.+++.++.+|..
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34558888888888888888888888754
No 14
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=87.50 E-value=1.5 Score=22.54 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15717 34 SDIASIEQTMSSIKTVMSDLKTHLYAK 60 (72)
Q Consensus 34 ~ei~~L~~el~~i~~~m~eLK~~LYak 60 (72)
.++..|++++..++.++..||+.|.|-
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888999999999999999988763
No 15
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.22 E-value=2.7 Score=22.78 Aligned_cols=36 Identities=11% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.+.|+...+.+..+...|..++..+..+..-||..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777888888888888888888888888765
No 16
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=84.59 E-value=1.9 Score=23.19 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
...|+...+.+..+-..|..++..+..+...||..|-
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777777777776653
No 17
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=83.53 E-value=4.8 Score=23.43 Aligned_cols=37 Identities=8% Similarity=0.264 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 21 SEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 21 a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
..+.|.+.++.+..+|+....+++.++..+...|..+
T Consensus 38 ekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 38 AKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888999999999999999998888765
No 18
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=81.29 E-value=6 Score=22.94 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
...++...+.+..++..|.+....+..++..|+..|
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667888888888888888888888888776
No 19
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.28 E-value=4.8 Score=24.88 Aligned_cols=30 Identities=7% Similarity=0.288 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 28 SRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 28 ~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
..++++.+|..|..++.+...++.+|++.-
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677777777777777777777777653
No 20
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=81.19 E-value=4 Score=22.78 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
...+.+-+....-+..|..|+..+.....+..+|+.+|
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666777888888888888888888888776
No 21
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=80.37 E-value=6.7 Score=22.98 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
...||..+..+..+++.|..+...+..++..+|..+-+
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999987654
No 22
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=80.02 E-value=2.4 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
++++++|..|+++...+..+..+++..|
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555556666555555555555544
No 23
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=79.83 E-value=3.9 Score=21.73 Aligned_cols=42 Identities=10% Similarity=0.244 Sum_probs=25.5
Q ss_pred ceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 12 IFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 12 ~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.|-=.+.+++-..|+ ++..+++.+..+...++.++..|+..|
T Consensus 16 ~~rGY~~~EVD~FLd----~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 16 SFRGYDEDEVNEFLA----QVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp ETTEEEHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556677777776 666677777777777777777776543
No 24
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=79.08 E-value=3.6 Score=23.45 Aligned_cols=19 Identities=5% Similarity=0.335 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQT 42 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~e 42 (72)
.|+...++++.+|..|+..
T Consensus 26 ~le~~Ie~LE~~i~~le~~ 44 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQ 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 25
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=77.83 E-value=8.7 Score=22.80 Aligned_cols=36 Identities=8% Similarity=0.311 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
........-...++.||++|+.++..++.-.+.+|+
T Consensus 40 rLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~ 75 (96)
T 1t3j_A 40 RLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKL 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334455666677788888888888888777777764
No 26
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=77.75 E-value=9.2 Score=24.80 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
|...+.++...+.........++.+|+.||-.|+.
T Consensus 108 l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~q 142 (170)
T 3l4q_C 108 IHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQ 142 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 44578889999999999999999999999988864
No 27
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=77.64 E-value=4.5 Score=27.45 Aligned_cols=52 Identities=12% Similarity=0.291 Sum_probs=43.6
Q ss_pred cccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15717 9 AGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAK 60 (72)
Q Consensus 9 iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYak 60 (72)
|.+.-|.+|.-+-|..+-.-...+++.|+.+..........+.+||..|..|
T Consensus 355 l~~~~I~lP~l~eQ~~I~~~l~~~d~~i~~l~~~~~~~~~~L~~lk~~LL~k 406 (412)
T 3okg_A 355 LQNVFIPLPPLEEQRRIVAYLDQIQQQVAALKRAQAETEAELKRLEQAILDK 406 (412)
T ss_dssp HHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888999999998887777888899999888765
No 28
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=77.21 E-value=6.3 Score=24.24 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=28.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 17 IKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 17 ~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
+.+...+.|+...+.++.+|..|+..+..+...+..++..+
T Consensus 92 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 132 (148)
T 3gpv_A 92 TILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEI 132 (148)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677888888888888888888888777777666544
No 29
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=77.01 E-value=11 Score=25.68 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=43.7
Q ss_pred cccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15717 9 AGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAK 60 (72)
Q Consensus 9 iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYak 60 (72)
|...-|.+|.-.-|..+-...+.+.+.++.+..........+.+||..|-.+
T Consensus 365 l~~~~i~lPpl~EQ~~Iv~~l~~~~~~id~l~~~~~~~~~~l~~lk~sLL~~ 416 (464)
T 2y7c_A 365 IKSQVVLLPPVKEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAK 416 (464)
T ss_dssp HHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888888888888888888899999999988889999999888765
No 30
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=76.61 E-value=15 Score=24.84 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=32.6
Q ss_pred ceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 12 IFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 12 ~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.|..-+.+....+|-..-..+++++..|+.++..+..+.+.+.++|
T Consensus 156 ~f~~asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~ 201 (228)
T 3q0x_A 156 AFRPGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQL 201 (228)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777777777777777777777777666666665
No 31
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=75.93 E-value=7.7 Score=22.48 Aligned_cols=36 Identities=6% Similarity=0.196 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
.++...+.|+.+-..|..++..+..++..||..|..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666666666666554
No 32
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=75.34 E-value=4.9 Score=20.56 Aligned_cols=25 Identities=12% Similarity=0.412 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 32 IKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 32 l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
+=..|+++..++...+.+.++|++.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 33
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae, orthobunyavirus, aedes triseriatu hydrolase; 2.20A {Bunyavirus la crosse} PDB: 2xi7_A*
Probab=75.15 E-value=1.3 Score=29.18 Aligned_cols=15 Identities=53% Similarity=0.888 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhCCC
Q psy15717 50 MSDLKTHLYAKFGNH 64 (72)
Q Consensus 50 m~eLK~~LYakFG~~ 64 (72)
--+||+.||.|||+.
T Consensus 162 ff~Lr~~L~dkF~Dd 176 (184)
T 2xi5_A 162 FFDLKQLLYEKFGDD 176 (184)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCh
Confidence 458999999999973
No 34
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=74.57 E-value=10 Score=21.96 Aligned_cols=40 Identities=13% Similarity=0.351 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
...+.|++....|..+|+.|+.++..+..-+..+-..+.+
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~ 82 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLA 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHhc
Confidence 4456889999999999999999999888887766554433
No 35
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=73.90 E-value=11 Score=21.82 Aligned_cols=34 Identities=6% Similarity=0.226 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 19 RNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSD 52 (72)
Q Consensus 19 e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~e 52 (72)
+.-.+.++...+.+++.+..++.++.+++..+.+
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666655554
No 36
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=73.42 E-value=5.3 Score=18.19 Aligned_cols=20 Identities=10% Similarity=0.366 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15717 38 SIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 38 ~L~~el~~i~~~m~eLK~~L 57 (72)
+|-.++++++.++..|++.|
T Consensus 5 elykeledlqerlrklrkkl 24 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666655
No 37
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.44 E-value=8.2 Score=24.68 Aligned_cols=39 Identities=8% Similarity=0.228 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
.....++....++...+..-+..++.+..++.+||.+++
T Consensus 108 ~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 108 KEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777778888888899999999999999998765
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=72.43 E-value=13 Score=26.24 Aligned_cols=38 Identities=11% Similarity=0.267 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
..++.|++.+.+-++.|.+|+.++..+..++.++....
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 429 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777766543
No 39
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=72.29 E-value=14 Score=22.54 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=27.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 17 IKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 17 ~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
+.+...+.|++..+.++++|..|+..+..+...+......
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777778887777777777777666655543
No 40
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=70.96 E-value=7.8 Score=19.11 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
+++..++.|-.+...++.+-..||..|
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 445555555555555555555555554
No 41
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.68 E-value=9.6 Score=20.02 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 17 IKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMS 51 (72)
Q Consensus 17 ~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~ 51 (72)
|...=-+.|-...+.++.+++.|..+.++...++.
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344567778888889999999988888888764
No 42
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=70.45 E-value=7.3 Score=23.98 Aligned_cols=32 Identities=6% Similarity=0.321 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
+++..+-++..++.++..++.+...+..++..
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~ 127 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKR 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555554443
No 43
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=69.80 E-value=9.9 Score=21.74 Aligned_cols=36 Identities=17% Similarity=0.383 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
++++-|..-+.+++.-|.+|+.+...+...+.-||.
T Consensus 32 rT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 32 RTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555544
No 44
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=69.40 E-value=11 Score=23.81 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 19 RNSEKSLEESRQNIKSDIASIEQ 41 (72)
Q Consensus 19 e~a~e~LE~~ke~l~~ei~~L~~ 41 (72)
++|...|+.....+.++++.-..
T Consensus 78 eeA~~~L~eYn~rL~~E~~dR~~ 100 (152)
T 4fla_A 78 DEACLLLAEYNGRLAAELEDRRQ 100 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666654333
No 45
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=69.33 E-value=6.9 Score=17.80 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK 54 (72)
+++.++.+|..+...++.+..+||
T Consensus 4 qlkdevgelkgevralkdevkdlk 27 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDLK 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHhHHHHHHHHHhccC
Confidence 345555666666666555555553
No 46
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=69.31 E-value=8.2 Score=18.82 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.+++..++.|=.+-..+..+...||..|
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4566666677777777777777777665
No 47
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=68.91 E-value=24 Score=23.78 Aligned_cols=55 Identities=7% Similarity=0.106 Sum_probs=41.4
Q ss_pred cccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCC
Q psy15717 9 AGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAK-FGN 63 (72)
Q Consensus 9 iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYak-FG~ 63 (72)
+.+.-|.+|.-.-|..+-.-...+++.|+.++.....+......|+..++.+ |++
T Consensus 164 l~~~~i~lP~l~eQ~~I~~~l~~~~~~i~~~~~~~~~~~~~~~~l~q~~~~~~f~~ 219 (412)
T 3okg_A 164 VYNTLIPLPPLEEQRRIVAKVEALMERVREVRRLRAEAQKDTELLMQTALAEVFPH 219 (412)
T ss_dssp HHTSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HhcCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 5566778888888889988888999999888877777766666666655544 544
No 48
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=68.90 E-value=12 Score=21.24 Aligned_cols=34 Identities=6% Similarity=0.230 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.++.....|..+-..|..++..+..++..||..|
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666677777777777777776544
No 49
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.74 E-value=5.8 Score=22.43 Aligned_cols=31 Identities=0% Similarity=0.201 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 26 EESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 26 E~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
+.....++++|...++++..+++++..++++
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4445566666666666666666666665543
No 50
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=68.58 E-value=8.8 Score=18.71 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.+++..++.|=.+...++.+...||..|
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3566667777777777777777777765
No 51
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=68.50 E-value=13 Score=20.64 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 28 SRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 28 ~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
....++.++..++.+++.+..+...|+..|
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677777777777777777777777766
No 52
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=68.38 E-value=24 Score=24.01 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=42.1
Q ss_pred cccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15717 9 AGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAK 60 (72)
Q Consensus 9 iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYak 60 (72)
|...-|.+|.-.-|..+-+-...+.+.++++.+.++.....+.++|..|..+
T Consensus 152 l~~~~iplPpl~EQ~~Iv~~Ld~~~~~id~~~~~~~~~~~~l~~~k~~ll~~ 203 (464)
T 2y7c_A 152 FDLINIPIPPLAEQKIIAEKLDTLLAQVDSTKARFEQIPQILKRFRQAVLGG 203 (464)
T ss_dssp HHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677887777778877777888888999988888888899999887765
No 53
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=67.93 E-value=12 Score=20.19 Aligned_cols=28 Identities=7% Similarity=0.224 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
..++.+++.|+.+-..+..+...|+..|
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777777776554
No 54
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=67.01 E-value=23 Score=22.97 Aligned_cols=40 Identities=13% Similarity=0.166 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 18 KRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 18 ~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.+...+.|++..+.++++|..|+..+..+...+..++...
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 77 MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788888888999999999888888888877776543
No 55
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=66.71 E-value=16 Score=21.02 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
......+.....+..++..|..++..+..++..|...+-
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777888888888888888877777654
No 56
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.51 E-value=10 Score=22.63 Aligned_cols=34 Identities=6% Similarity=0.153 Sum_probs=23.9
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 13 FVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSI 46 (72)
Q Consensus 13 Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i 46 (72)
|..=|...|.+..+...+++++++++|+..+..+
T Consensus 61 ~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 61 MSLNPTSVARQRLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp ESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777888888888888887776544
No 57
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=66.48 E-value=27 Score=24.51 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=23.9
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 13 FVDLIKRNSEKSLEESRQNIKSDIASIEQT 42 (72)
Q Consensus 13 Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~e 42 (72)
+..++.++..+.|++..+++.+++++++..
T Consensus 240 lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T 1lrz_A 240 LAYINFDEYIKELNEERDILNKDLNKALKD 269 (426)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888889999888888888888643
No 58
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.93 E-value=19 Score=25.70 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 28 SRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 28 ~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
..+.++++..+++.+++..+.++.+|+..
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 59
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=65.66 E-value=17 Score=26.19 Aligned_cols=34 Identities=9% Similarity=0.174 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
|+....++.+.+.+++.+++....++.+++.+||
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555554
No 60
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=65.55 E-value=12 Score=19.08 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 23 KSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 23 e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
..||.....++....+|++.+..+..+=.=|+.+|
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 45777888888888888888888888877777766
No 61
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=65.20 E-value=17 Score=20.76 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhCC
Q psy15717 23 KSLEESRQNIKSDIASIEQTMSSIKTVMSDLKT---HLYAKFGN 63 (72)
Q Consensus 23 e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~---~LYakFG~ 63 (72)
-.|-...+.++.+|..|+..++...-++..|+. .+|.-.-.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556668888999999999999999999998 77765433
No 62
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=65.08 E-value=10 Score=18.31 Aligned_cols=28 Identities=4% Similarity=0.068 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.+++..++.|-.+...+..+...||..|
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3556666666666666666777777655
No 63
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=63.92 E-value=13 Score=20.60 Aligned_cols=8 Identities=13% Similarity=0.434 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy15717 39 IEQTMSSI 46 (72)
Q Consensus 39 L~~el~~i 46 (72)
|...+..+
T Consensus 55 Lr~~i~~L 62 (70)
T 1gd2_E 55 LRQKVRQL 62 (70)
T ss_dssp HTTHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 64
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=63.66 E-value=18 Score=20.50 Aligned_cols=30 Identities=7% Similarity=0.205 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 21 SEKSLEESRQNIKSDIASIEQTMSSIKTVM 50 (72)
Q Consensus 21 a~e~LE~~ke~l~~ei~~L~~el~~i~~~m 50 (72)
-.+.++...+.+++.++.++.++.+++..+
T Consensus 73 ~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 73 KLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 65
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=63.27 E-value=24 Score=25.17 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
|...+.+++.++.........++.+|+.||-.|+.
T Consensus 217 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~q 251 (373)
T 3hhm_B 217 IIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQ 251 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 44566677777777777788888899988877753
No 66
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=63.07 E-value=11 Score=17.85 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
..++++|..|..++..++-+...||.-
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456667777777777777677766653
No 67
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=63.04 E-value=12 Score=18.22 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.+++..++.|=.+-..++.+-..||..|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3555666666666666666666776655
No 68
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=63.00 E-value=14 Score=22.47 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhCCCccC
Q psy15717 48 TVMSDLKTHLYAKFGNHIKL 67 (72)
Q Consensus 48 ~~m~eLK~~LYakFG~~InL 67 (72)
.+-.+.+...|+=||=+|..
T Consensus 29 ~ks~eFReav~~LlGykId~ 48 (123)
T 4dzo_A 29 TKIQEFRKACYTLTGYQIDI 48 (123)
T ss_dssp HHHHHHHHHHHHHHSEEEEE
T ss_pred HHHHHHHHHHHHHhCeEEEE
Confidence 34445556778888877764
No 69
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.03 E-value=3.2 Score=26.14 Aligned_cols=38 Identities=8% Similarity=0.218 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 21 SEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 21 a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
....++....++...+..-+.-++..+.++.+||.+++
T Consensus 97 ~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~~ 134 (135)
T 2e7s_A 97 EKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVMH 134 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456666677777777777888888888889988876
No 70
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=61.99 E-value=20 Score=20.46 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 23 KSLEESRQNIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 23 e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
..|+....+++.+-..++..+..++.+-.+|..
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555543
No 71
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=61.95 E-value=18 Score=20.05 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 19 RNSEKSLEESRQNIKSDIASIEQTMSSIKT 48 (72)
Q Consensus 19 e~a~e~LE~~ke~l~~ei~~L~~el~~i~~ 48 (72)
....+.|+...+.++.+|..|+.....+..
T Consensus 38 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 67 (99)
T 1q08_A 38 QESKGIVQERLQEVEARIAELQSMQRSLQR 67 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444444
No 72
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=61.75 E-value=25 Score=21.49 Aligned_cols=36 Identities=8% Similarity=0.173 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 18 KRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDL 53 (72)
Q Consensus 18 ~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eL 53 (72)
.+...+.|....+.+.+++..|+.-++.+...+..+
T Consensus 78 ~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~ 113 (146)
T 3hh0_A 78 TEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKF 113 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556677777777777777777777777666544
No 73
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=61.72 E-value=12 Score=18.05 Aligned_cols=27 Identities=7% Similarity=0.218 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
+++..++.|-.+-..++.+-..||..|
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 455555566666666666666666554
No 74
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=60.26 E-value=29 Score=21.86 Aligned_cols=43 Identities=7% Similarity=0.212 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15717 18 KRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAK 60 (72)
Q Consensus 18 ~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYak 60 (72)
.+...-+++.-+.++..+.+.|-+++++++.-+..||+..+-+
T Consensus 5 ~~~~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~R 47 (141)
T 3okq_A 5 NSSNRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAER 47 (141)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 3445678899999999999999999999999999999887665
No 75
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=60.02 E-value=18 Score=20.45 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15717 34 SDIASIEQTMSSIKTVMSDLKTHLYAKFGN 63 (72)
Q Consensus 34 ~ei~~L~~el~~i~~~m~eLK~~LYakFG~ 63 (72)
..+..|++++...+.+...|+..+--||.|
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd 47 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVIALKNKN 47 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 367778888888888888888888777654
No 76
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=59.83 E-value=15 Score=21.03 Aligned_cols=26 Identities=8% Similarity=0.310 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 22 EKSLEESRQNIKSDIASIEQTMSSIK 47 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el~~i~ 47 (72)
.+.|+...+.++++|..|+..+..+.
T Consensus 77 ~~~l~~~~~~l~~~i~~l~~~~~~l~ 102 (109)
T 1r8d_A 77 KAALQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555544444444443
No 77
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=59.66 E-value=36 Score=22.72 Aligned_cols=47 Identities=11% Similarity=0.233 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy15717 18 KRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNH 64 (72)
Q Consensus 18 ~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~~ 64 (72)
..+|...|++..-..-++-..|+...+....+.++||..|..=-||.
T Consensus 28 ~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 28 RTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 34566778888888888999999999999999999999888777763
No 78
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=58.96 E-value=18 Score=21.27 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 32 IKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 32 l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
+.+++..|+.++..++.++..|+..+
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~~ 27 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKLH 27 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44566667777777777777776654
No 79
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=58.82 E-value=22 Score=20.01 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 27 ESRQNIKSDIASIEQTMSSIKTVMS 51 (72)
Q Consensus 27 ~~ke~l~~ei~~L~~el~~i~~~m~ 51 (72)
+..+.+...|++|+.++..+...|+
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777777777776665
No 80
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=58.67 E-value=29 Score=24.41 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
||.........|..|++.++....++.+|+.+
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~ 48 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQ 48 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666777777777777777777653
No 81
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=58.58 E-value=20 Score=19.35 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=34.2
Q ss_pred eecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 14 VDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 14 v~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
|....+.-..+|.+...++-..|..|+..+...+.+...|.+.|-
T Consensus 5 VktRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 5 SKTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566788888889999999999999999999999988774
No 82
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.46 E-value=15 Score=18.04 Aligned_cols=25 Identities=12% Similarity=0.369 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 32 IKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 32 l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
++.+++.|-.+-..+..+-..||..
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 83
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=57.96 E-value=36 Score=22.15 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=32.6
Q ss_pred ccccccccceeecchhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 4 VERNGAGEIFVDLIKRNSE------KSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 4 ~v~y~iGe~Fv~l~~e~a~------e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.+.+++|.+=++-=.+.|. ...+....+++++|+.|++++..-+.+-..+...|
T Consensus 106 ~vsfrLGs~~Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 106 DVSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp SCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455565544443333333 25566777888888888888776666665555544
No 84
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=57.53 E-value=21 Score=19.36 Aligned_cols=40 Identities=5% Similarity=0.135 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 18 KRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 18 ~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
..+|+.+-....+.+......-.+.+...+.++.+|+..+
T Consensus 26 r~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~i 65 (77)
T 3trt_A 26 LQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQV 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666666777777777777777777655
No 85
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=57.36 E-value=20 Score=20.09 Aligned_cols=23 Identities=0% Similarity=0.104 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 32 IKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 32 l~~ei~~L~~el~~i~~~m~eLK 54 (72)
.+.-|+.|...+-.-...+..|+
T Consensus 26 qE~tIeeLn~~v~~Qq~~Id~L~ 48 (78)
T 3efg_A 26 QEQALTELSEALADARLTGARNA 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444443333333333333
No 86
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=57.35 E-value=15 Score=19.01 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15717 22 EKSLEESRQNIKSDIASIEQTM 43 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el 43 (72)
+..||+-...+..+|..|+.+.
T Consensus 26 eqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 26 EQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 87
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=56.69 E-value=41 Score=22.46 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=36.3
Q ss_pred cccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15717 9 AGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAK 60 (72)
Q Consensus 9 iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYak 60 (72)
|...-|.+|.-+-|+.+..-...+++.|+.++.+++. +.+||..|-.+
T Consensus 368 l~~~~i~lPpl~eQ~~I~~~l~~ld~~i~~~~~~~~~----l~~~k~~Ll~~ 415 (425)
T 1yf2_A 368 LENFKIPLPPLEEQKQIAKILSSVDKSIELKKQKKEK----LQRMKKKIMEL 415 (425)
T ss_dssp HHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HhcCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4566678888888888888888888888888777654 56777777665
No 88
>2ynz_A General control protein GCN4, putative inner MEMB protein; membrane protein, DALL domain, DALL2, trimeric autotransport adhesin, TAA; 1.40A {Saccharomyces cerevisiae} PDB: 1uo2_A 1gcl_A 2ccn_A 1uo0_A 1unz_A 1uny_A 2bni_A* 1u9h_A*
Probab=56.52 E-value=17 Score=23.26 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
+++..|+++-+++=-|+.+...+.++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~~GSQL~~ 31 (154)
T 2ynz_A 3 QIEDKIEEILSKIYHIENEIARIKKLIYE 31 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 45667777778888888888888888886
No 89
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=56.03 E-value=20 Score=19.83 Aligned_cols=30 Identities=10% Similarity=0.247 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTVMSDL 53 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~m~eL 53 (72)
.|......++.+++.|..+...+..++..|
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566677788888888888887777655
No 90
>3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding protein; 1.94A {Thermococcus thioreducens}
Probab=56.01 E-value=5.4 Score=24.42 Aligned_cols=13 Identities=46% Similarity=0.925 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhCC
Q psy15717 51 SDLKTHLYAKFGN 63 (72)
Q Consensus 51 ~eLK~~LYakFG~ 63 (72)
-++|...|.|||.
T Consensus 82 pe~k~efy~kfg~ 94 (128)
T 3da5_A 82 PELKKEFYKKFGP 94 (128)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCC
Confidence 4799999999995
No 91
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=55.02 E-value=17 Score=17.53 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
+++..++.|=.+-..++.+...||..|
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455556666666666666666666655
No 92
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.84 E-value=46 Score=23.90 Aligned_cols=20 Identities=10% Similarity=0.315 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15717 34 SDIASIEQTMSSIKTVMSDL 53 (72)
Q Consensus 34 ~ei~~L~~el~~i~~~m~eL 53 (72)
+++++++..++..+.+..+|
T Consensus 544 ~~~~~le~~~~~~~~~~~~l 563 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAEL 563 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHH
Confidence 44444444444444444433
No 93
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=54.16 E-value=21 Score=18.38 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
+......+...++.+.+.+..+...+..+|..
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666666666666666666543
No 94
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=54.11 E-value=18 Score=17.56 Aligned_cols=28 Identities=4% Similarity=0.188 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.+++..+++|-++......+...|+..|
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566667777777777777777777766
No 95
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=53.99 E-value=30 Score=20.84 Aligned_cols=29 Identities=14% Similarity=0.411 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15717 32 IKSDIASIEQTMSSIKTVMSDLKTHLYAKF 61 (72)
Q Consensus 32 l~~ei~~L~~el~~i~~~m~eLK~~LYakF 61 (72)
+...+++-...+..|++++..+| .+|.+|
T Consensus 64 ~~~kv~en~~~L~QIQ~ei~s~r-d~hkR~ 92 (115)
T 1ezj_A 64 SARKVDENKQLLKQIQESVESFR-DIYKRF 92 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHH-HHHHHH
Confidence 34455666667777777777777 667666
No 96
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=53.01 E-value=28 Score=19.44 Aligned_cols=34 Identities=9% Similarity=0.214 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.|.+++. .++.+...+..+.+.+..+...|+..|
T Consensus 44 kA~~yI~----~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 44 KAKLHIK----KLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544 555555666666666666666666654
No 97
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=52.75 E-value=19 Score=17.45 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
+++..++.|=.+-++++.+-..||..|
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455555555556666666666666655
No 98
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=52.15 E-value=24 Score=18.47 Aligned_cols=26 Identities=4% Similarity=0.208 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
.++.+++.|+.+-..+..+...|+..
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555443
No 99
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=52.09 E-value=21 Score=20.68 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKT 48 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~ 48 (72)
.|+...+.+++++..|+.++.....
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555554443
No 100
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=51.22 E-value=25 Score=18.28 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKF 61 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakF 61 (72)
.-|+...+++++|+.|+.++..-+.+-..+...|-.=|
T Consensus 9 fAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44666778888888888887766666555555554433
No 101
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=50.05 E-value=49 Score=24.72 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhCC
Q psy15717 23 KSLEESRQNIKSDIASIEQTM-------SSIKTVMSDLKTHLYAKFGN 63 (72)
Q Consensus 23 e~LE~~ke~l~~ei~~L~~el-------~~i~~~m~eLK~~LYakFG~ 63 (72)
+.|.++.+++.++|+.|+.-+ +-+.+++.++|+ |||+
T Consensus 433 ~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~----~y~~ 476 (496)
T 2nov_A 433 VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKK----KFAT 476 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----HHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----HhCC
Confidence 345666667777777776654 334556666655 5776
No 102
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=49.43 E-value=36 Score=19.69 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
++.....++..|..++.+++.....+.+.+..|
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555544433
No 103
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=49.27 E-value=39 Score=19.95 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 26 EESRQNIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 26 E~~ke~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
.....+++.++..+...+..+...+.+++.
T Consensus 7 ~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~ 36 (133)
T 1fxk_C 7 VAQLNIYQSQVELIQQQMEAVRATISELEI 36 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555544444444443
No 104
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=48.04 E-value=28 Score=17.98 Aligned_cols=13 Identities=8% Similarity=0.263 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy15717 32 IKSDIASIEQTMS 44 (72)
Q Consensus 32 l~~ei~~L~~el~ 44 (72)
++..|..|+..+.
T Consensus 49 L~~ri~~Le~~l~ 61 (70)
T 1zme_C 49 LQKDLNDKTEENN 61 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 105
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=47.92 E-value=38 Score=19.50 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
.++-..|+.+++++..++.+..+||.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777776666664
No 106
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=47.45 E-value=47 Score=20.40 Aligned_cols=30 Identities=13% Similarity=0.367 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 23 KSLEESRQNIKSDIASIEQTMSSIKTVMSD 52 (72)
Q Consensus 23 e~LE~~ke~l~~ei~~L~~el~~i~~~m~e 52 (72)
..|++.+...++.+.+|+.++..+..++.+
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555544444443
No 107
>2jo7_A Glycosylphosphatidylinositol-anchored merozoite surface protein; surface antigen, GPI-anchored protein, recombinant vaccine; NMR {Babesia divergens}
Probab=47.34 E-value=22 Score=23.80 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15717 33 KSDIASIEQTMSSIKTVMSDLKTHLYAKFGN 63 (72)
Q Consensus 33 ~~ei~~L~~el~~i~~~m~eLK~~LYakFG~ 63 (72)
..++..|-.++-+.+.+|-+| ||+.||.
T Consensus 196 ~~elk~Lia~lI~~Re~mMDL---lYGpiGh 223 (224)
T 2jo7_A 196 PANLKALVAELIELREQMMDL---LYGPIGH 223 (224)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---HHCCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHH---hccCcCC
Confidence 355556666666666666655 8999996
No 108
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=47.29 E-value=63 Score=21.82 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=38.7
Q ss_pred cccceeecc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCCCccC
Q psy15717 9 AGEIFVDLI-KRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAK-FGNHIKL 67 (72)
Q Consensus 9 iGe~Fv~l~-~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYak-FG~~InL 67 (72)
|...-|.+| .-+-|+.+......+++.|+.++.+++. +.+||..|-.+ |-..|..
T Consensus 343 l~~~~IplP~pl~eQ~~I~~~l~~id~~i~~~~~~i~~----L~~lk~~LL~~lf~G~l~v 399 (406)
T 1ydx_A 343 AGEIKVPYVKSFQLQRKAGKIVFLLDQKLDQYKKELSS----LTVIRDTLLKKLFPDMTER 399 (406)
T ss_dssp HHTCEEEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHSCCCC--
T ss_pred HhccEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCcccc
Confidence 566778888 8888888888888888888888776654 56677666554 5555543
No 109
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=47.15 E-value=18 Score=20.77 Aligned_cols=25 Identities=8% Similarity=0.311 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 23 KSLEESRQNIKSDIASIEQTMSSIK 47 (72)
Q Consensus 23 e~LE~~ke~l~~ei~~L~~el~~i~ 47 (72)
..|+...+.++++|..|+..++.+.
T Consensus 77 ~~l~~~~~~l~~~i~~l~~~~~~l~ 101 (108)
T 2vz4_A 77 AHLRRQHELLSARIGKLQKMAAAVE 101 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555544444444443
No 110
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=46.89 E-value=37 Score=19.10 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 18 KRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSD 52 (72)
Q Consensus 18 ~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~e 52 (72)
..+++...+...+.++..|..++.++..++..|..
T Consensus 19 l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 19 LRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777777777777776653
No 111
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=46.40 E-value=68 Score=22.06 Aligned_cols=28 Identities=4% Similarity=0.179 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 28 SRQNIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 28 ~ke~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
+.+.+++++..|+++++.++.....+++
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4445555555555555555444444444
No 112
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=46.36 E-value=7.2 Score=21.59 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccCC
Q psy15717 32 IKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLE 68 (72)
Q Consensus 32 l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~~InLe 68 (72)
+...|..+=...+--..-+..+++.|+.+|++ ++|.
T Consensus 17 i~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg-~dLs 52 (70)
T 1q1v_A 17 LKETIKKLLASANLEEVTMKQICKKVYENYPT-YDLT 52 (70)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSS-SCCS
T ss_pred HHHHHHHHHHhCCHHHHhHHHHHHHHHHHccC-CCCh
Confidence 33344443333333344567899999999932 5553
No 113
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=45.89 E-value=60 Score=21.21 Aligned_cols=13 Identities=8% Similarity=0.317 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy15717 39 IEQTMSSIKTVMS 51 (72)
Q Consensus 39 L~~el~~i~~~m~ 51 (72)
|..+++..+.+..
T Consensus 68 L~~E~e~~k~K~~ 80 (189)
T 2v71_A 68 LKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 114
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.74 E-value=40 Score=19.07 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=15.4
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLE---ESRQNIKSDIASIEQTMSSIKTVMSDL 53 (72)
Q Consensus 20 ~a~e~LE---~~ke~l~~ei~~L~~el~~i~~~m~eL 53 (72)
.|.+++. .....+..+++.|..+-..+..++.+|
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555444 222333344444555554554444444
No 115
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=45.71 E-value=45 Score=19.69 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 21 SEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 21 a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.++.|-+++.+++.-+..|+.+-..-...+++|.+.+
T Consensus 19 S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~aki 55 (101)
T 1d7m_A 19 SREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKL 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888877777777777777776654
No 116
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=45.38 E-value=68 Score=23.81 Aligned_cols=40 Identities=13% Similarity=0.315 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhCC
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTVMSDLKTH---LYAKFGN 63 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~---LYakFG~ 63 (72)
.|+++.+++.++|+.++.-+.+-...+.-++.. +-.|||+
T Consensus 420 kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~ 462 (470)
T 3ilw_A 420 RIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGD 462 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 455556666666666666544432222222222 2247775
No 117
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=45.29 E-value=3.6 Score=27.26 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 34 SDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 34 ~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
++.+++..+++.+++++.+|+..|-.
T Consensus 256 ~~~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 256 SHEDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp --------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45566777777777777777776654
No 118
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=45.23 E-value=34 Score=23.45 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.|+.....+.....+|.+.+.....++..||..|
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666677777777777777665
No 119
>1r6f_A Virulence-associated V antigen; coiled-coil, protein binding; 2.17A {Yersinia pestis} SCOP: e.46.1.1
Probab=44.70 E-value=65 Score=22.68 Aligned_cols=39 Identities=15% Similarity=0.434 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hCCCccC
Q psy15717 29 RQNIKSDIASIEQTMSSIKTVMSDLKTHLYAK-----FGNHIKL 67 (72)
Q Consensus 29 ke~l~~ei~~L~~el~~i~~~m~eLK~~LYak-----FG~~InL 67 (72)
..++..++++|+.+++-.-.-.+++-+.|-+. |...|||
T Consensus 128 R~~lk~eL~~LTaeLKIysVIQSeIn~~lS~~g~~~~~~~~~nl 171 (310)
T 1r6f_A 128 RSKLREELAELTAELKIYSVIQAEINKHLSSSGTINIHDKSINL 171 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEECSTTCCCS
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcccCCcccccc
Confidence 35678899999999999888889999999988 8888887
No 120
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.65 E-value=84 Score=22.51 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.+++...+++..++.....+.++..++..++..+
T Consensus 541 ~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 541 DLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666665443
No 121
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=44.56 E-value=61 Score=22.70 Aligned_cols=28 Identities=7% Similarity=0.356 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 27 ESRQNIKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 27 ~~ke~l~~ei~~L~~el~~i~~~m~eLK 54 (72)
+..++++.+|.+|..++++...+..+||
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666888888888888888888888876
No 122
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=44.51 E-value=68 Score=21.73 Aligned_cols=28 Identities=4% Similarity=0.150 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 29 RQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 29 ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
..++..++..+..++..+.++...|+..
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3345555555555555555555555444
No 123
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.12 E-value=48 Score=19.60 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 28 SRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 28 ~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
....+..+|+.|+.+.+.+..+...|...|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777777777777777776666
No 124
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=44.08 E-value=48 Score=19.52 Aligned_cols=23 Identities=9% Similarity=0.312 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDL 53 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eL 53 (72)
.++++++.|+.+...+...+..+
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~ 32 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNIC 32 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444444444433
No 125
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=43.94 E-value=41 Score=20.44 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15717 32 IKSDIASIEQTMSSIKTVMSD 52 (72)
Q Consensus 32 l~~ei~~L~~el~~i~~~m~e 52 (72)
+.+++.+++.+++.+..++..
T Consensus 37 l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 37 FFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 126
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=43.72 E-value=51 Score=19.74 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK 54 (72)
+.+.++..|..++.+++..+..|.
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555544
No 127
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=43.52 E-value=69 Score=25.05 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhCC
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL---YAKFGN 63 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L---YakFG~ 63 (72)
.|+++.+++.++|+.|+.-+.+-...+.-+|..| -.|||+
T Consensus 406 kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~kygd 448 (716)
T 1zvu_A 406 KIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 448 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 5556666677777766655544333333333222 356776
No 128
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=43.46 E-value=43 Score=19.61 Aligned_cols=24 Identities=4% Similarity=0.234 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK 54 (72)
+++.++..++.++...+.++..|+
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444443
No 129
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.40 E-value=37 Score=18.05 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTVM 50 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~m 50 (72)
.|+.....+..+|+.|+.++.-+..-|
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555544444433
No 130
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.33 E-value=67 Score=29.29 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=27.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 16 LIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 16 l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
-|...+...+++..+..++++.++++++.+++.++..||..+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~ 2051 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEY 2051 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666777777777777777777777776653
No 131
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=43.18 E-value=36 Score=17.83 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
.+|...+..|..+++.+....+.|+...+
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666665544
No 132
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=43.12 E-value=53 Score=19.72 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=34.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 16 LIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 16 l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
-+.-.|-.-|......+...|..+..++..++.++..+|+.
T Consensus 65 nnVGdAl~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~~~ 105 (106)
T 2yny_A 65 NNVGSALSALNTSMKQIEDKIEEILSKIYHIENEIARIKKL 105 (106)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567777888888899999999999999999999888863
No 133
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=42.73 E-value=36 Score=17.73 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
|......+.+.-.+|.+-+.....++..||..|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556777777777888888888888888776
No 134
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=42.71 E-value=52 Score=19.57 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
-++..+..++.++..+......|...+
T Consensus 83 ~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 83 RTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 135
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=42.59 E-value=44 Score=19.84 Aligned_cols=30 Identities=3% Similarity=0.178 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK 54 (72)
+.+..++...++..|...+..++.++...|
T Consensus 87 l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 87 WKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445556667777777777777766543
No 136
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=42.05 E-value=37 Score=22.50 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
.....|....+.+..++..|+..+..+...+..++.
T Consensus 76 ~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~ 111 (249)
T 3qao_A 76 DKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKG 111 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777777888888877777777777766654
No 137
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=41.69 E-value=39 Score=23.30 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 35 DIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 35 ei~~L~~el~~i~~~m~eLK~~L 57 (72)
+++.|+++...+.+++.+|.+..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554443
No 138
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=41.24 E-value=33 Score=17.88 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy15717 42 TMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 42 el~~i~~~m~eLK~~LYa 59 (72)
.+..++.+-.+||-+||-
T Consensus 14 ~l~~LEkqF~~LkEqlY~ 31 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLFR 31 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555566666666663
No 139
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=41.17 E-value=46 Score=18.54 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 19 RNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSD 52 (72)
Q Consensus 19 e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~e 52 (72)
.+++...+.....++..|..+++++..++..|..
T Consensus 18 ~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 18 REMEENFAVEAANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666667777777777777777776653
No 140
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=41.05 E-value=86 Score=23.52 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=29.6
Q ss_pred eecchhHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhCC----CccCCC
Q psy15717 14 VDLIKRNSEK---------------SLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL---YAKFGN----HIKLEA 69 (72)
Q Consensus 14 v~l~~e~a~e---------------~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L---YakFG~----~InLe~ 69 (72)
+.++..+|+- .|+.+.+++.++|+.|++-+.+-...+.-+|..| -.|||+ .|-||-
T Consensus 418 f~lse~Qa~aIl~mrL~rLt~le~~ki~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~~g~~RrT~i~~~~ 495 (500)
T 3lpx_A 418 YYLTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATPARLMEVICEELVAIRDEFGDERRTEITLEH 495 (500)
T ss_dssp ---CHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCSEEC---
T ss_pred cCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCceeeccc
Confidence 5677777754 4556666667777776666555444444444433 358887 366653
No 141
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=40.88 E-value=47 Score=23.27 Aligned_cols=22 Identities=9% Similarity=0.389 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15717 36 IASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 36 i~~L~~el~~i~~~m~eLK~~L 57 (72)
|..|+..++.++.++..|...+
T Consensus 30 I~~Lq~~le~L~~KI~~LE~~v 51 (323)
T 1lwu_B 30 LRSMKSVLEHLRAKMQRMEEAI 51 (323)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555554443
No 142
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=40.78 E-value=52 Score=19.81 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15717 38 SIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 38 ~L~~el~~i~~~m~eLK~~L 57 (72)
.-+..+..++.++.+||..|
T Consensus 79 ~R~~~Vsalq~KiaeLKrqL 98 (107)
T 2k48_A 79 NRRAAVSTLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777665
No 143
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=40.76 E-value=66 Score=21.36 Aligned_cols=51 Identities=8% Similarity=0.040 Sum_probs=36.8
Q ss_pred cccccceeecchhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q psy15717 7 NGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIE----------QTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 7 y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~----------~el~~i~~~m~eLK~~L 57 (72)
+.+|.....-..+-..++++......+.-++.+. .++.++..++..++.+|
T Consensus 175 ~~~G~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~~~~i~e~~ 235 (244)
T 3gnl_A 175 IFFGPCLLKEQSAIFKSKWRHEANTWQNIIQTISNNQPVSTENQAKIRELEHKIALVEDVL 235 (244)
T ss_dssp HHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888889999998888887777664 34455555666666555
No 144
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=40.24 E-value=39 Score=17.41 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK 54 (72)
-++..|++.+.+.+.--+.+-.++++.-.++.+|-
T Consensus 10 ~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE 44 (48)
T 3ci9_A 10 VVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLE 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45667777777777776777777777777666653
No 145
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=40.18 E-value=59 Score=22.10 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 29 RQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 29 ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
...++.+|..|..++...+..|..||..|
T Consensus 88 l~~lD~ei~sLkrqIq~~kQ~~~~L~~~~ 116 (235)
T 2iw5_B 88 LRQLDMELVSVKRQIQNIKQTNSALKEKL 116 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999998877
No 146
>2yo2_A General control protein GCN4, putative inner MEMB protein; FGG domain, DALL domain, DALL2, trimeric autotransporter ADH TAA; 2.00A {Saccharomyces cerevisiae}
Probab=39.61 E-value=45 Score=21.60 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
+++..|+++-+++..|..+.+.--.+||+
T Consensus 3 ~~~~~~~~~~~~~~~~~n~~a~nGSQLy~ 31 (170)
T 2yo2_A 3 QIEDKIEEILSKIYHIENEIARIKKLIYS 31 (170)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 45667777788888888888888888885
No 147
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=39.31 E-value=42 Score=17.49 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 17 IKRNSEKSLEESRQNIKSDIASIEQTMSSIK 47 (72)
Q Consensus 17 ~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~ 47 (72)
..+...-+||.+...+++.|..|+..+..++
T Consensus 21 klenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 3455666788888888888888877766554
No 148
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=39.00 E-value=74 Score=20.25 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 23 KSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 23 e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
+.|+..+.+...+|.+-.+.+.++..+...+|..
T Consensus 8 ~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknL 41 (155)
T 2aze_A 8 QNLEVERQRRLERIKQKQSQLQELILQQIAFKNL 41 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888899999999999999998888888753
No 149
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=38.88 E-value=77 Score=20.41 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
+..+.|...+.+++..+..|+.+...+...+..|+.
T Consensus 49 ~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 49 RFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777777777776665
No 150
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.62 E-value=45 Score=17.61 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSI 46 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i 46 (72)
.|+.....+..+|..|+.++..+
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 151
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=38.49 E-value=55 Score=18.60 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15717 37 ASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 37 ~~L~~el~~i~~~m~eLK~~L 57 (72)
..-+..+..++.++.+||..|
T Consensus 48 ~~R~~~V~~lq~Ki~elkrql 68 (78)
T 2ic6_A 48 QSRRAAVSALETKLGELKREL 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666655
No 152
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=37.46 E-value=18 Score=25.47 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15717 34 SDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 34 ~ei~~L~~el~~i~~~m~eLK 54 (72)
+.|..|++.++..+.++.+|+
T Consensus 18 ~~i~~L~~~l~~~~~ki~~L~ 38 (319)
T 1fzc_C 18 SSIRYLQEIYNSNNQKIVNLK 38 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 153
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=37.38 E-value=64 Score=19.02 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhC
Q psy15717 20 NSEKSLEESRQNIKSDIASIE----QTMSSIKTVMSDLKTHLYAKFG 62 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~----~el~~i~~~m~eLK~~LYakFG 62 (72)
.++.-++..+.++..+|.++. .+.++-...+..||..|=+|++
T Consensus 22 q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~ 68 (107)
T 2no2_A 22 QAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQR 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666643 2333344455556666655554
No 154
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=37.06 E-value=1.1e+02 Score=23.00 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhCC
Q psy15717 23 KSLEESRQNIKSDIASIEQTMSS-------IKTVMSDLKTHLYAKFGN 63 (72)
Q Consensus 23 e~LE~~ke~l~~ei~~L~~el~~-------i~~~m~eLK~~LYakFG~ 63 (72)
+.|.++.+++.++|+.|+.-+.+ +..++.++|+ |||+
T Consensus 457 ~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~----~yg~ 500 (514)
T 2inr_A 457 VALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKK----KFKS 500 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH----HHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----HcCC
Confidence 34566666777777777765443 3455555554 6776
No 155
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=37.02 E-value=90 Score=20.66 Aligned_cols=50 Identities=8% Similarity=0.162 Sum_probs=29.5
Q ss_pred ccccccceeecchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 6 RNGAGEIFVDLIKRNSEKSLEESRQ---NIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 6 ~y~iGe~Fv~l~~e~a~e~LE~~ke---~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
..+=|+..+.++....+..+...+. .++..+...+.+++..+......+.
T Consensus 52 ~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~ 104 (341)
T 3fpp_A 52 KVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQR 104 (341)
T ss_dssp EECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466889999999887766554433 3344455555555555444444443
No 156
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=36.78 E-value=1e+02 Score=24.00 Aligned_cols=37 Identities=14% Similarity=0.504 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhCC
Q psy15717 23 KSLEESRQNIKSDIASIEQTMSS-------IKTVMSDLKTHLYAKFGN 63 (72)
Q Consensus 23 e~LE~~ke~l~~ei~~L~~el~~-------i~~~m~eLK~~LYakFG~ 63 (72)
+.|+++.+++.++|+.|+.-+.+ +..++.++| .|||+
T Consensus 640 ~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~----~~yg~ 683 (692)
T 2xcs_B 640 DKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIR----DRFGD 683 (692)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHcCC
Confidence 45666777777777777776666 444444444 46776
No 157
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=36.66 E-value=28 Score=22.41 Aligned_cols=40 Identities=33% Similarity=0.491 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhCC
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL---YAKFGN 63 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L---YakFG~ 63 (72)
.+|...+++-+.|=.++.++..|+.-..+||+.- -||||-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ta~e~c~~kf~~ 53 (166)
T 2r32_A 11 QIEDKIEEILSKIYHIENEIARIKKLIGERETAKEPCMAKFGP 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---------CCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhcCc
Confidence 4455555666667777777777777777777653 566663
No 158
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=36.57 E-value=54 Score=17.98 Aligned_cols=42 Identities=10% Similarity=0.194 Sum_probs=27.9
Q ss_pred cchhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 16 LIKRNSEKSLEE-----------SRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 16 l~~e~a~e~LE~-----------~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
+|.++..+.|.. ..+-+...+..++.++..+......|...+
T Consensus 17 fsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~ 69 (99)
T 1q08_A 17 FSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLN 69 (99)
T ss_dssp CCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666653 345667777777777777777777776655
No 159
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=36.19 E-value=57 Score=18.16 Aligned_cols=32 Identities=9% Similarity=0.350 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
+|.....++..|..++..+++.+.+-..+|+.
T Consensus 12 ~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~E 43 (72)
T 3cve_A 12 VEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSN 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555544444443
No 160
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=35.86 E-value=63 Score=18.56 Aligned_cols=25 Identities=12% Similarity=0.336 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
++...|+.+++++...+.+..+|+.
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555543
No 161
>2y3w_A SAS6, spindle assembly abnormal protein 6 homolog; structural protein, cytoskeleton, basal BODY, centriole, CAR cartwheel HUB; 1.98A {Danio rerio}
Probab=35.55 E-value=81 Score=20.10 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=32.0
Q ss_pred ceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 12 IFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVM 50 (72)
Q Consensus 12 ~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m 50 (72)
.|...+.+....+|-.....++++...|+..+..++..+
T Consensus 143 ~f~~a~d~~ik~yLa~rl~~~k~~~~~l~~~L~~~~~~~ 181 (182)
T 2y3w_A 143 KLLPGSDTDIKKYLASCLSSVKEEKQQLQQKLRKTEEDL 181 (182)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467778888889999999999999999999988877654
No 162
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=35.51 E-value=64 Score=18.48 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 32 IKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 32 l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.+++|..|+..+..-..++..|...|
T Consensus 52 TK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 52 TKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33445555555555555555555444
No 163
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=35.47 E-value=58 Score=18.02 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 26 EESRQNIKSDIASIEQTMSSIKTVM 50 (72)
Q Consensus 26 E~~ke~l~~ei~~L~~el~~i~~~m 50 (72)
+...+..+..|..++.++..++..|
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~ 28 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARM 28 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444
No 164
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.39 E-value=1.2e+02 Score=21.56 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhh
Q psy15717 22 EKSLEESRQNIKSDIASIEQTMSSIKTVMS---DLKTHLYAKF 61 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~---eLK~~LYakF 61 (72)
.+.|++..++++.+|..++.++..+..++. .+++.||...
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888888888888777776554 3566676654
No 165
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=35.11 E-value=66 Score=18.54 Aligned_cols=20 Identities=5% Similarity=0.250 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15717 38 SIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 38 ~L~~el~~i~~~m~eLK~~L 57 (72)
.+..++...+..+..||..|
T Consensus 82 ~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 82 PMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34455555666666665543
No 166
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=34.87 E-value=65 Score=18.42 Aligned_cols=26 Identities=8% Similarity=0.271 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 29 RQNIKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 29 ke~l~~ei~~L~~el~~i~~~m~eLK 54 (72)
...++..|..++.+++.....+.+.+
T Consensus 46 i~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 46 QQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 167
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.68 E-value=97 Score=20.37 Aligned_cols=20 Identities=10% Similarity=0.360 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVM 50 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m 50 (72)
..+.+|+.|+.++...+...
T Consensus 38 ~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 38 TKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34444444444444444333
No 168
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=34.36 E-value=60 Score=20.17 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDL 53 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eL 53 (72)
.....+..|+.++...-..|..|
T Consensus 98 ~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 98 LSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566666776666666666555
No 169
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=34.34 E-value=1.1e+02 Score=20.73 Aligned_cols=31 Identities=6% Similarity=0.214 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 19 RNSEKSLEESRQNIKSDIASIEQTMSSIKTV 49 (72)
Q Consensus 19 e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~ 49 (72)
.++...|+...+.++.+++.++.++..+...
T Consensus 225 ~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 225 GKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444
No 170
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=34.30 E-value=61 Score=17.90 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK 54 (72)
.++.++..|+.+...+...+.+.+
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 666666777777777776666654
No 171
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=34.24 E-value=69 Score=18.47 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMS 51 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~ 51 (72)
+++.........++..|..++.++..++..|.
T Consensus 30 e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~ 61 (95)
T 3mov_A 30 ELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQ 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666666666665554
No 172
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=34.04 E-value=77 Score=18.98 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 32 IKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 32 l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
++.++..|+.++..++.++..|+..
T Consensus 21 ~~~~l~~L~~~~~~L~~~l~~l~~~ 45 (168)
T 1buu_A 21 IEVKLANMEAEINTLKSKLELTNKL 45 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444566666666666666666654
No 173
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=33.87 E-value=28 Score=18.47 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHI 65 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~~I 65 (72)
|+++..+.=+=+++|+..=+.--.++..|+++|-+.|=+.|
T Consensus 5 L~RDv~RaiELle~lq~sgevp~~KL~aLq~VLqSdF~~aV 45 (53)
T 1zl8_A 5 LERDVQRILELMEHVQKTGEVNNAKLASLQQVLQSEFFGAV 45 (53)
T ss_dssp HHHHHHHHHHHHHHHGGGSSSTHHHHHHHHHHHSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 44455555555556655555566788889999888875443
No 174
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=33.69 E-value=52 Score=21.68 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=36.5
Q ss_pred cccccceeecchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy15717 7 NGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIE----QTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 7 y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~----~el~~i~~~m~eLK~~L 57 (72)
|.+|.....-..+-..++++....+.+.-++.+. .+..++..++..++..|
T Consensus 173 ~~~G~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~i~e~l 227 (230)
T 3lec_A 173 LRFGPFLLSNNTTVFKEKWQNELNKLTFALNSIPNSKMEERAILEDKIQDIKEVL 227 (230)
T ss_dssp HHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHhhcCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 5578888877888888999988888888777664 22335666666666554
No 175
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.68 E-value=78 Score=18.97 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 19 RNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 19 e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
+.-.+.+...+......+..|+.++..+...-..|+..
T Consensus 20 e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~ 57 (111)
T 2v66_B 20 EALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKY 57 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554455555555555555555555443
No 176
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=33.64 E-value=58 Score=20.50 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIK 47 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~ 47 (72)
++...+++-.+..+++|..|+.++..|+
T Consensus 95 ~~~~~a~~~~~~s~~ri~~lekeL~~i~ 122 (160)
T 2cly_B 95 EDVKSCAEFLTQSKTRIQEYEKELEKMR 122 (160)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666666665555543
No 177
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.58 E-value=75 Score=18.70 Aligned_cols=18 Identities=17% Similarity=0.434 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15717 41 QTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 41 ~el~~i~~~m~eLK~~LY 58 (72)
.....|..++.+|=+.||
T Consensus 47 ~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASLF 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555556666666666655
No 178
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=33.46 E-value=68 Score=18.18 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 19 RNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 19 e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.++...|-.+.-..++.|+.|++++..-+.+-..+-..|
T Consensus 29 ~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeL 67 (77)
T 3mtu_E 29 TEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQML 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345566777777888999999988876666655555444
No 179
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.24 E-value=1e+02 Score=20.21 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
+.++.++.+++.++.....+....+..|+
T Consensus 56 ~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 56 LALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 180
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=33.17 E-value=71 Score=18.35 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15717 38 SIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 38 ~L~~el~~i~~~m~eLK~~L 57 (72)
.+..++...+..+..||..|
T Consensus 71 ~~~~klr~Yk~dL~~lk~el 90 (102)
T 1vcs_A 71 MYSNRMRSYKQEMGKLETDF 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666654
No 181
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=33.06 E-value=61 Score=21.19 Aligned_cols=51 Identities=8% Similarity=0.122 Sum_probs=37.5
Q ss_pred cccccceeecchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy15717 7 NGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIE----QTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 7 y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~----~el~~i~~~m~eLK~~L 57 (72)
+.+|.....-..+-..++++....+.+.-++.+. .+..++..++..++..|
T Consensus 167 ~~~G~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~e~l 221 (225)
T 3kr9_A 167 VRFGPFLSKEVSPVFVQKWQKEAEKLEFALGQIPEKNLEERQVLVDKIQAIKEVL 221 (225)
T ss_dssp HHHCTTHHHHCCHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHhcCCHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 5578888888888889999999888888887764 22336666666666655
No 182
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=32.74 E-value=1.1e+02 Score=20.19 Aligned_cols=31 Identities=10% Similarity=0.418 Sum_probs=20.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh
Q psy15717 30 QNIKSDIASIE----QTMSSIKTVMSDLKTHLYAK 60 (72)
Q Consensus 30 e~l~~ei~~L~----~el~~i~~~m~eLK~~LYak 60 (72)
..++.++++|+ .++-.++.+-..+..-||.|
T Consensus 36 ~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~k 70 (225)
T 2e50_A 36 DEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQK 70 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 34555555555 44456667777888888876
No 183
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=32.67 E-value=1e+02 Score=19.94 Aligned_cols=38 Identities=11% Similarity=0.209 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 21 SEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 21 a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
+...||..++++..-.+....-......+|+.|+-.|-
T Consensus 28 k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d 65 (169)
T 3k29_A 28 KRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLD 65 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777766666666666666677777777664
No 184
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=32.31 E-value=81 Score=18.75 Aligned_cols=29 Identities=7% Similarity=0.339 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 26 EESRQNIKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 26 E~~ke~l~~ei~~L~~el~~i~~~m~eLK 54 (72)
|.+.+.++.++..|...++.....|.+|.
T Consensus 17 e~e~~~l~~~~~el~~~l~~~~~~~~e~g 45 (125)
T 1joc_A 17 EGEIEKLQTKVLELQRKLDNTTAAVQELG 45 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455566666666666666655555553
No 185
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=32.25 E-value=66 Score=17.68 Aligned_cols=14 Identities=7% Similarity=0.200 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q psy15717 36 IASIEQTMSSIKTV 49 (72)
Q Consensus 36 i~~L~~el~~i~~~ 49 (72)
|..|+.+++....+
T Consensus 50 iq~lE~eld~~ee~ 63 (81)
T 1ic2_A 50 LKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 186
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=31.89 E-value=1.2e+02 Score=20.44 Aligned_cols=48 Identities=8% Similarity=0.237 Sum_probs=31.6
Q ss_pred cccceeecc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15717 9 AGEIFVDLI-KRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAK 60 (72)
Q Consensus 9 iGe~Fv~l~-~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYak 60 (72)
|.+.-|.+| .-.-|+.+-+-...+++.|+..+..++ .+.++|..|+.+
T Consensus 155 l~~~~i~lP~~l~eQ~~I~~~l~~~d~~i~~~~~~~~----~l~~~k~~l~~~ 203 (406)
T 1ydx_A 155 LKELEIPFTSNKNEQHAIANTLSVFDERLENLASLIE----INRKLRDEYAHK 203 (406)
T ss_dssp HHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred hhceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 556677888 777777777777776666665555444 455666666654
No 187
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=31.78 E-value=1.3e+02 Score=21.01 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
.+.....++..++.+++++..++.+..+|...
T Consensus 24 ~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 24 HDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666665543
No 188
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=31.67 E-value=87 Score=18.89 Aligned_cols=41 Identities=7% Similarity=0.161 Sum_probs=23.1
Q ss_pred cchhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 16 LIKRNSEKSLE----------ESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 16 l~~e~a~e~LE----------~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
++.+++.+.|. ...+-+...+..++.++..+...+..|...
T Consensus 74 ~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 124 (148)
T 3gpv_A 74 MPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQK 124 (148)
T ss_dssp CCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665 233445555556666666555555555443
No 189
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=31.52 E-value=60 Score=16.99 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=25.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 16 LIKRNSEKSLEESRQNIKSDIASIEQTMSSIK 47 (72)
Q Consensus 16 l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~ 47 (72)
++.++.+.++......++.+|+.|.......+
T Consensus 10 ls~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KR 41 (51)
T 2jo8_A 10 WTVEDLQKRLLALDPMMEQEIEEIRQKYQSKR 41 (51)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccHHHHHHHHHHHHHHHHhH
Confidence 68888888888888888888888877665543
No 190
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=31.45 E-value=85 Score=18.70 Aligned_cols=34 Identities=6% Similarity=0.327 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.|..++..+-=+|+-|.+.+++.+..+.+|+..+
T Consensus 20 QLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~ 53 (103)
T 4h22_A 20 QLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQY 53 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555443
No 191
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=31.35 E-value=1.1e+02 Score=19.83 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 23 KSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 23 e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
..|+..+..++..+..++.-......+..++...|
T Consensus 86 ~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~l 120 (192)
T 2p22_C 86 EDLHEQKDKVQALLENARILESKYVASWQDYHSEF 120 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666555555555555555554333
No 192
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=31.29 E-value=1.1e+02 Score=19.71 Aligned_cols=42 Identities=7% Similarity=0.007 Sum_probs=30.0
Q ss_pred cchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 16 LIKRNSEKSLE----ESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 16 l~~e~a~e~LE----~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
++.+++.+.|. ...+-+...+..++.++..+...+..|...+
T Consensus 64 ~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (278)
T 1r8e_A 64 TPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVK 109 (278)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777764 3456677777888888888877777777654
No 193
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.98 E-value=1.1e+02 Score=19.91 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 23 KSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 23 e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
..||+..+.+++.+..|...+..+..+...+|..
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 194
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=30.97 E-value=1.2e+02 Score=21.11 Aligned_cols=16 Identities=0% Similarity=0.233 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSI 46 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i 46 (72)
.+++++++|..++..+
T Consensus 251 ~~~~~~~~~~~~~~~~ 266 (426)
T 1lrz_A 251 ELNEERDILNKDLNKA 266 (426)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555555
No 195
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=30.94 E-value=1.2e+02 Score=20.32 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
+|-.+|+.+++++..++.+..+||.
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555543
No 196
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=30.87 E-value=1.2e+02 Score=20.13 Aligned_cols=47 Identities=17% Similarity=0.267 Sum_probs=32.9
Q ss_pred cccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 9 AGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 9 iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
|.+.-|.+|.-.-|..+-+-..++++-|+.++..++.++ ++|..|+.
T Consensus 158 l~~~~i~lPpl~EQ~~I~~~l~~ld~~i~~~~~~i~~l~----~~k~~l~~ 204 (425)
T 1yf2_A 158 VKSFKIPLPPLEEQKQIAKILTKIDEGIEIIEKSINKLE----RIKKGLMH 204 (425)
T ss_dssp HHTCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HhcCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 556678888877788888777777777777777666554 45555543
No 197
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.61 E-value=1.4e+02 Score=21.55 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
.....|..|+..+.....++..|+..+
T Consensus 102 ~~~~~i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 102 AHENTIQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344577777777777777777777644
No 198
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=30.51 E-value=66 Score=20.93 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=27.7
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 13 FVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 13 Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
|++...+-..+.++.....+..++...+.+.+.-..+|.++...|=
T Consensus 210 ff~~g~e~~~~~~~p~~~~l~~~l~~~r~~~~~~~~~~~~~~~~l~ 255 (265)
T 2q12_A 210 FFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLE 255 (265)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333323345566667777777777777777777776666553
No 199
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=30.47 E-value=47 Score=19.19 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15717 38 SIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 38 ~L~~el~~i~~~m~eLK~~L 57 (72)
.|+..+..++.++..|+..|
T Consensus 6 ~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 6 ELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555544
No 200
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=30.38 E-value=1.4e+02 Score=20.88 Aligned_cols=39 Identities=10% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
-+...|.....+++.+|..++..+...+.....|+..+.
T Consensus 302 ~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~ 340 (406)
T 4dyl_A 302 LTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELR 340 (406)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888889999999999999999999999998875
No 201
>2ixo_A Serine/threonine-protein phosphatase 2A activator 1; isomerase, PP2A phosphatase activator prolyl isomerase PTPA, nuclear protein; 2.6A {Saccharomyces cerevisiae} SCOP: a.268.1.1 PDB: 2ixp_A*
Probab=30.35 E-value=40 Score=23.85 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhCCCccCCC
Q psy15717 47 KTVMSDLKTHLYAKFGNHIKLEA 69 (72)
Q Consensus 47 ~~~m~eLK~~LYakFG~~InLe~ 69 (72)
.....||...|..-|||+.-+|.
T Consensus 122 ~~~~~EL~~Yl~~SFGn~tRIDY 144 (323)
T 2ixo_A 122 HEVVPELQYYLGNSFGSSTRLDY 144 (323)
T ss_dssp GGGHHHHHHHHHTSSCCTTTCEE
T ss_pred HHHHHHHHHHHHhccCCCccccc
Confidence 34589999999999999887764
No 202
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.35 E-value=83 Score=18.25 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=28.6
Q ss_pred ccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSI 46 (72)
Q Consensus 10 Ge~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i 46 (72)
.+-|=|+|.++=...|.....+++++|.+-....+.+
T Consensus 5 ~~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl 41 (98)
T 2ke4_A 5 TEDFSHLPPEQQRKRLQQQLEERSRELQKEVDQREAL 41 (98)
T ss_dssp CSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred chhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999888888888888888888776664443
No 203
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=30.21 E-value=97 Score=22.94 Aligned_cols=30 Identities=10% Similarity=0.267 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCccCC
Q psy15717 39 IEQTMSSIKTVMSDLKTHLYAKFGNHIKLE 68 (72)
Q Consensus 39 L~~el~~i~~~m~eLK~~LYakFG~~InLe 68 (72)
++.-...+..++.+|...+|.-.|..+|+.
T Consensus 164 l~~~~~~~~~~~~~l~~~i~~~~g~~fN~~ 193 (540)
T 4dfk_A 164 LRALSLEVAEEIARLEAEVFRLAGHPFNLN 193 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 444444445555555555555556655553
No 204
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=30.16 E-value=1.2e+02 Score=20.21 Aligned_cols=33 Identities=12% Similarity=0.307 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
.|+...++++.+.+.+++.+..++..+.+|+..
T Consensus 182 ~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 182 DLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677778888888888888888877653
No 205
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=30.03 E-value=1.1e+02 Score=19.50 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=4.3
Q ss_pred HHHHhhhCCC
Q psy15717 55 THLYAKFGNH 64 (72)
Q Consensus 55 ~~LYakFG~~ 64 (72)
..|.++.|.+
T Consensus 120 eEL~~~l~~~ 129 (191)
T 1nfn_A 120 GEVQAMLGQS 129 (191)
T ss_dssp HHHHHTTTCC
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 206
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.80 E-value=91 Score=21.29 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK 54 (72)
|.+..+.+...+..++.++..++.++..|+
T Consensus 66 L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 66 LAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444455555555555555554443
No 207
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=29.69 E-value=92 Score=18.54 Aligned_cols=24 Identities=4% Similarity=0.270 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 22 EKSLEESRQNIKSDIASIEQTMSS 45 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el~~ 45 (72)
.+.|...+..+...|..+.+.+++
T Consensus 71 ~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 71 CDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544
No 208
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=29.41 E-value=73 Score=23.92 Aligned_cols=30 Identities=13% Similarity=0.360 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCccCC
Q psy15717 39 IEQTMSSIKTVMSDLKTHLYAKFGNHIKLE 68 (72)
Q Consensus 39 L~~el~~i~~~m~eLK~~LYakFG~~InLe 68 (72)
+..-...+..++.+|...+|.-+|..+|+.
T Consensus 216 l~~~~~~~~~~~~~l~~~~~~~~g~~fN~~ 245 (592)
T 3pv8_A 216 LEQMGKELAEQLGTVEQRIYELAGQEFNIN 245 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 444445555566666666666667666653
No 209
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=29.41 E-value=98 Score=18.75 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15717 38 SIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 38 ~L~~el~~i~~~m~eLK~~LY 58 (72)
.-+..+..++.++.+||..|=
T Consensus 66 ~R~~~Vs~lq~KiaeLKrqLA 86 (113)
T 4fi5_A 66 DREGVAVSIQAKIDELKRQLA 86 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666653
No 210
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=29.04 E-value=92 Score=18.33 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15717 40 EQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 40 ~~el~~i~~~m~eLK~~L 57 (72)
+..+..++.++.+||..|
T Consensus 51 ~~~V~~lq~Ki~elkr~l 68 (96)
T 2ic9_A 51 RAAVSALETKLGELKREL 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555554
No 211
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=29.01 E-value=18 Score=18.55 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 33 KSDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 33 ~~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
+-+++..++.-+....+++.||..+=.
T Consensus 5 QrELeEa~Erae~ae~~vnkLR~k~R~ 31 (45)
T 3zwh_Q 5 QRELEDATETADAMNREVSSLKNKLRR 31 (45)
T ss_dssp SSHHHHHTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445666667777777777777776643
No 212
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=28.93 E-value=55 Score=15.77 Aligned_cols=27 Identities=4% Similarity=0.199 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
+++..+++|-.+-..+..+-..||..|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344444555555555555555555544
No 213
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.65 E-value=48 Score=15.00 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQTMSS 45 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~ 45 (72)
+|.+...+++.+|..|+-++..
T Consensus 4 rlkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHH
Confidence 4556667778888887766644
No 214
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=28.56 E-value=52 Score=15.32 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDL 53 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eL 53 (72)
..++..|..|+.++..++.+...|
T Consensus 3 aaleqkiaaleqkcaaceqkiaal 26 (32)
T 4g1a_A 3 AALEQKIAALEQKCAACEQKIAAL 26 (32)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888777665
No 215
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=28.34 E-value=50 Score=18.14 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15717 42 TMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 42 el~~i~~~m~eLK~~LY 58 (72)
++.++-.+-++||+.|+
T Consensus 4 Elr~iLqERNELKa~vf 20 (65)
T 1yhn_B 4 EFEQILQERNELKAKVF 20 (65)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555566666666553
No 216
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=28.34 E-value=96 Score=18.34 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy15717 22 EKSLEESRQNIK---SDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 22 ~e~LE~~ke~l~---~ei~~L~~el~~i~~~m~eLK 54 (72)
...|++.+..-+ +.+.+|+.++..+..++.+..
T Consensus 52 ~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 52 QESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555442 556667777666666665554
No 217
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.05 E-value=1.1e+02 Score=19.00 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15717 22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGN 63 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~ 63 (72)
.+.-.+...+++.+......++.....+...|-..+.+-|+.
T Consensus 87 eeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ 128 (151)
T 1yke_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIED 128 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566778888888888888888877777777766654
No 218
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.63 E-value=1.1e+02 Score=22.66 Aligned_cols=26 Identities=4% Similarity=0.078 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15717 36 IASIEQTMSSIKTVMSDLKTHLYAKF 61 (72)
Q Consensus 36 i~~L~~el~~i~~~m~eLK~~LYakF 61 (72)
...|.+++..++.++.++...|....
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555544444433
No 219
>2ixn_A Serine/threonine-protein phosphatase 2A activator; PP2A phosphatase activator prolyl isomerase PTPA, isomerase; 2.8A {Saccharomyces cerevisiae} SCOP: a.268.1.1
Probab=27.58 E-value=51 Score=23.14 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhCCCccCCC
Q psy15717 46 IKTVMSDLKTHLYAKFGNHIKLEA 69 (72)
Q Consensus 46 i~~~m~eLK~~LYakFG~~InLe~ 69 (72)
...-..||...|-.-|||+.-+|.
T Consensus 108 ~~~~~~EL~~Yl~~SFGn~tRiDY 131 (310)
T 2ixn_A 108 TDEQLEQLSIYLDESWGNKRRIDY 131 (310)
T ss_dssp CHHHHHHHHHHHHTSSCBTTTTEE
T ss_pred hhhhHHHHHHHHHhCcCCCccCcc
Confidence 355889999999999999887764
No 220
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.55 E-value=1e+02 Score=18.47 Aligned_cols=26 Identities=8% Similarity=0.239 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
+-+...++.++.++..+......|..
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~ 109 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDF 109 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444443
No 221
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.48 E-value=63 Score=15.93 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTV 49 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~ 49 (72)
++...|.++++++..++.+
T Consensus 12 EtkeQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665554
No 222
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=27.43 E-value=92 Score=17.80 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 35 DIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 35 ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
++..-+....++..+|..|+..+..
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555556666665554
No 223
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=27.30 E-value=89 Score=17.63 Aligned_cols=32 Identities=9% Similarity=0.313 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
+|.....++..|..++..+...+.+-..+|..
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~E 49 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444443
No 224
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=27.20 E-value=69 Score=17.60 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQT 42 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~e 42 (72)
.|-..-..++.+|..++..
T Consensus 21 ~L~~eH~~LD~~I~~le~~ 39 (76)
T 1zhc_A 21 KIFEKHNQLDDDIKTAEQQ 39 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4455555677777777654
No 225
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=27.17 E-value=1.1e+02 Score=18.53 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15717 22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGN 63 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~ 63 (72)
.+.-.+...+++.+......++.....+...|-..+.+-|+.
T Consensus 87 ee~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 128 (132)
T 1ykh_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 128 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666788888888888888888888877777776654
No 226
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=27.07 E-value=21 Score=17.34 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
+.++..|..|+.+.+....+...|...|
T Consensus 7 ~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 7 EAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666677777776666666665544
No 227
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=27.02 E-value=23 Score=23.80 Aligned_cols=22 Identities=5% Similarity=0.093 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15717 32 IKSDIASIEQTMSSIKTVMSDL 53 (72)
Q Consensus 32 l~~ei~~L~~el~~i~~~m~eL 53 (72)
+..+++.+..+..+++.++.+|
T Consensus 153 ~~~~i~ql~~En~~le~~Ie~L 174 (250)
T 2ve7_C 153 SADKMQQLNAAHQEALMKLERL 174 (250)
T ss_dssp HHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333333
No 228
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=26.92 E-value=1.8e+02 Score=21.10 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY 58 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY 58 (72)
++.........|..|+..+......+..|+..+-
T Consensus 96 ~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~ 129 (411)
T 3ghg_C 96 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVA 129 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555577778888888888888888877653
No 229
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=26.90 E-value=1.1e+02 Score=18.59 Aligned_cols=26 Identities=8% Similarity=0.128 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 21 SEKSLEESRQNIKSDIASIEQTMSSI 46 (72)
Q Consensus 21 a~e~LE~~ke~l~~ei~~L~~el~~i 46 (72)
....++...+.++.+|..|+.-.+.+
T Consensus 91 ~~~ll~~~~~~l~~qi~~L~~~~~~L 116 (154)
T 2zhg_A 91 WKQLSSQWREELDRRIHTLVALRDEL 116 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 230
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=26.76 E-value=84 Score=19.93 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=25.2
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 15 DLIKRNSEKSLEESRQNIKSDIASIEQTMSSI 46 (72)
Q Consensus 15 ~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i 46 (72)
.+|.+++...|++..+.++.+++.+..-.+..
T Consensus 117 ~l~~e~~~~~L~~r~~~l~~~l~~~~~~~~~~ 148 (180)
T 2rkh_A 117 LMEAEERAHQIDLLIEGVDSELARLADLRGSD 148 (180)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888999999999999888888888766444
No 231
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.61 E-value=1.7e+02 Score=20.52 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 27 ESRQNIKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 27 ~~ke~l~~ei~~L~~el~~i~~~m~eLK 54 (72)
+.+++++.++.++...+.+......++.
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 449 EENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 3444444555555555544444444443
No 232
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=26.07 E-value=39 Score=19.30 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhC
Q psy15717 50 MSDLKTHLYAKFG 62 (72)
Q Consensus 50 m~eLK~~LYakFG 62 (72)
..+||..|+.++|
T Consensus 39 V~~LK~kIe~~~G 51 (97)
T 2kj6_A 39 VEAVKEKLWKKCG 51 (97)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC
Confidence 5689999999998
No 233
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.99 E-value=76 Score=16.37 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK 54 (72)
..++..+..|+.+-..+..++..|+
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554
No 234
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=25.93 E-value=54 Score=15.13 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhhC
Q psy15717 47 KTVMSDLKTHLYAKFG 62 (72)
Q Consensus 47 ~~~m~eLK~~LYakFG 62 (72)
.-++++|-+.|=-|||
T Consensus 15 vlEl~eLvk~lEe~fG 30 (30)
T 1zav_U 15 VSELAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3466778888888887
No 235
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=25.91 E-value=1.1e+02 Score=18.13 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=19.1
Q ss_pred cchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh
Q psy15717 16 LIKRNSEKSLEES---RQNIKSDIASIEQTMSSIKTVMSDLKTHLY--AKF 61 (72)
Q Consensus 16 l~~e~a~e~LE~~---ke~l~~ei~~L~~el~~i~~~m~eLK~~LY--akF 61 (72)
++.++.++.+.+. ...++++-=.|+..+....-++++|+.... +||
T Consensus 42 l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dlgKf 92 (107)
T 1ytz_T 42 LNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQAQKH 92 (107)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHhcCc
Confidence 3445444444322 222333333333344444445555543321 666
No 236
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=25.58 E-value=97 Score=17.45 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 37 ASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 37 ~~L~~el~~i~~~m~eLK~~LYa 59 (72)
+.++..++.+......+-..+|.
T Consensus 57 ~~i~~~~~~L~~~~~~i~~~~~~ 79 (113)
T 1ud0_A 57 EEFEHQQKELEKVCNPIITKLYQ 79 (113)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445553
No 237
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=25.29 E-value=1.8e+02 Score=20.45 Aligned_cols=49 Identities=10% Similarity=0.274 Sum_probs=39.7
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhCC
Q psy15717 15 DLIKRNSEKSLEESRQNIKSDIASIEQT---------MSSIKTVMSDLKTHLYAKFGN 63 (72)
Q Consensus 15 ~l~~e~a~e~LE~~ke~l~~ei~~L~~e---------l~~i~~~m~eLK~~LYakFG~ 63 (72)
-++...+...+++..+.+..-++.+... .+.|...+..|-..|--.||.
T Consensus 382 gl~~~~~~~ii~~~~~~~~~~~~~~~~~lp~~~~~~~~~~I~~~~~~l~~rL~re~~~ 439 (440)
T 3tpd_A 382 RFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTAVESNVLRLHGRLSREYGS 439 (440)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3677888899999888888888887665 578899999999999988885
No 238
>1i1r_B Viral IL-6; cytokine/receptor complex, GP130; 2.40A {Human herpesvirus 8} SCOP: a.26.1.1
Probab=24.91 E-value=1.1e+02 Score=19.83 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15717 37 ASIEQTMSSIKTVMSDLKTHLYAKFGN 63 (72)
Q Consensus 37 ~~L~~el~~i~~~m~eLK~~LYakFG~ 63 (72)
+++++.++-|..+.++|+..|-++||.
T Consensus 10 ~~~~~~ik~Il~~i~~l~~elC~~~~~ 36 (181)
T 1i1r_B 10 DLLIQRLNWMLWVIDECFRDLCYRTGI 36 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 456677778888888888888999985
No 239
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=24.87 E-value=93 Score=17.01 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcc
Q psy15717 22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIK 66 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~~In 66 (72)
.........++..-+..+...+...-..+.+-=...=+.|++++|
T Consensus 56 ~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~~d~~~a~~f~~~~~ 100 (101)
T 3fav_A 56 VVRFQEAANKQKQELDEISTNIRQAGVQYSRADEEQQQALSSQMG 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 334444444555555555555555555555554555556666655
No 240
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=24.81 E-value=1.2e+02 Score=22.79 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhCC
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTV------MSDLKTHLYAKFGN 63 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~------m~eLK~~LYakFG~ 63 (72)
|.+...++..+++.|+.++-.+-.. =.+|...||.++|=
T Consensus 216 l~~~~~~~~~~~~~l~~~~~~~~g~~fN~~Spkql~~~Lf~~lgl 260 (592)
T 3pv8_A 216 LEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQL 260 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCC
Confidence 4444556777777777777665432 26888999998874
No 241
>2ibl_A Fibritin; foldon, trimerization, bacteriophage T4, HELP molecule, chaperone; 1.32A {Unidentified phage} PDB: 1ox3_A
Probab=24.78 E-value=1.2e+02 Score=18.74 Aligned_cols=46 Identities=7% Similarity=0.150 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy15717 19 RNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNH 64 (72)
Q Consensus 19 e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~~ 64 (72)
.+|--.+.+..+.++..+..+.+.+.++....+.++..+|+-.|-+
T Consensus 56 NRa~VqVQkNVv~Ld~N~~~~~dkvnEvid~VN~I~~a~~~~~~~r 101 (130)
T 2ibl_A 56 NRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQEAGYIPEAPR 101 (130)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCC
T ss_pred ccchhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHhhhccCCcCcc
Confidence 4566677788889999999999999999999999999888765543
No 242
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=24.78 E-value=1.8e+02 Score=20.92 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
|.+..+.+.+++.+++++++...+.-+++|..|=+
T Consensus 127 L~elv~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~ 161 (392)
T 1u7l_A 127 IKDLITLISNESSQLDADVRATYANYNSAKTNLAA 161 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777777777777777777777777655
No 243
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=24.76 E-value=1.4e+02 Score=20.85 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 26 EESRQNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 26 E~~ke~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
++....++..++.+++++..+......|...
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666666666665543
No 244
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.68 E-value=1.2e+02 Score=18.08 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 22 EKSLEESRQNIKSDIASIEQTMSSIKTVMS 51 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~ 51 (72)
+...+......+..|..|+.++..++..|.
T Consensus 72 e~~~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 72 KGRYCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555555554443
No 245
>1alu_A Interleukin-6; cytokine, receptor, signaling, glycoprotein; HET: TLA; 1.90A {Homo sapiens} SCOP: a.26.1.1 PDB: 1il6_A 2il6_A 1p9m_B
Probab=24.40 E-value=1.1e+02 Score=19.82 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15717 37 ASIEQTMSSIKTVMSDLKTHLYAKFGN 63 (72)
Q Consensus 37 ~~L~~el~~i~~~m~eLK~~LYakFG~ 63 (72)
++++..++.|....++|+..|=++||.
T Consensus 25 ~~~~~~i~~il~~i~~l~~elC~~~~~ 51 (186)
T 1alu_A 25 ERIDKQIRYILDGISALRKETCNKSNM 51 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 366777888888888999999999986
No 246
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=24.32 E-value=68 Score=15.27 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK 54 (72)
.++.+...+++++..|+.+...+|
T Consensus 6 aikeeqaaieeeiqaikeeiaaik 29 (36)
T 1bb1_B 6 AIKEEQAAIEEEIQAIKEEIAAIK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666555
No 247
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=24.30 E-value=62 Score=18.50 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 28 SRQNIKSDIASIEQTMSSIKTVMSDL 53 (72)
Q Consensus 28 ~ke~l~~ei~~L~~el~~i~~~m~eL 53 (72)
+.+.++++|.+|..........+-+|
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDL 41 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDL 41 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666655555555444
No 248
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=24.29 E-value=1.5e+02 Score=19.21 Aligned_cols=27 Identities=0% Similarity=0.142 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTVM 50 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~m 50 (72)
.|.....+++++.++|..+-..+..++
T Consensus 156 ~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 156 ENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555556655555555544
No 249
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.27 E-value=1.2e+02 Score=17.97 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 26 EESRQNIKSDIASIEQTMSSIKTVM 50 (72)
Q Consensus 26 E~~ke~l~~ei~~L~~el~~i~~~m 50 (72)
+.....++..|..|+.++..++..|
T Consensus 74 ~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 74 ELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333444444444554444444444
No 250
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=24.04 E-value=2.2e+02 Score=22.39 Aligned_cols=17 Identities=12% Similarity=0.345 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQ 41 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~ 41 (72)
|+++.+++.++|+.++.
T Consensus 701 l~~E~~~l~~~i~~l~~ 717 (767)
T 2xkj_E 701 IRHEQDELSAKAAIIRE 717 (767)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 251
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=23.88 E-value=1.3e+02 Score=22.32 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhCC
Q psy15717 24 SLEESRQNIKSDIASIEQTMSSIKTV------MSDLKTHLYAKFGN 63 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~el~~i~~~------m~eLK~~LYakFG~ 63 (72)
.|++..+.+..++..++.++-.+-.. =.+|...||.++|=
T Consensus 163 ~l~~~~~~~~~~~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lgl 208 (540)
T 4dfk_A 163 YLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGL 208 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCC
Confidence 34455557777777777777665433 46889999988773
No 252
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.63 E-value=37 Score=18.84 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhC
Q psy15717 50 MSDLKTHLYAKFG 62 (72)
Q Consensus 50 m~eLK~~LYakFG 62 (72)
..+||..|+..||
T Consensus 35 V~~LK~~i~~~~g 47 (97)
T 1wjn_A 35 VQKVKGLLSRLLK 47 (97)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHC
Confidence 5689999999999
No 253
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=23.47 E-value=1.1e+02 Score=17.33 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15717 36 IASIEQTMSSIKTVMSDLKTHLYAK 60 (72)
Q Consensus 36 i~~L~~el~~i~~~m~eLK~~LYak 60 (72)
.+.++..++.+......+-..+|+.
T Consensus 61 ~e~i~~k~~eL~~~~~~i~~k~y~~ 85 (113)
T 3lof_A 61 KDEFEHKRKELEQVCNPIISGLYQG 85 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555666753
No 254
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.44 E-value=2.2e+02 Score=20.91 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcc
Q psy15717 31 NIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIK 66 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~~In 66 (72)
.+.+++..|.++++.++.++.++...|+...=.-=|
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN 155 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455666666677777777777777777765544333
No 255
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=23.40 E-value=1.3e+02 Score=22.30 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCccCCC
Q psy15717 37 ASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69 (72)
Q Consensus 37 ~~L~~el~~i~~~m~eLK~~LYakFG~~InLe~ 69 (72)
+.+..-...+..++.+|...+|.-.|..+|+..
T Consensus 227 ~~l~~~~~~~~~~~~~l~~~i~~~~g~~fN~~S 259 (605)
T 2kfn_A 227 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSS 259 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 356677777888899999999999998888753
No 256
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=23.39 E-value=1e+02 Score=24.35 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=20.2
Q ss_pred ecchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy15717 15 DLIKRNSEKSLEESRQNIK-SDIASIEQTMSSIKTVMSDLK 54 (72)
Q Consensus 15 ~l~~e~a~e~LE~~ke~l~-~ei~~L~~el~~i~~~m~eLK 54 (72)
.++..+|+-.|+=..-++. -++.+++++.+++..+..+|+
T Consensus 676 ~lse~qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~ 716 (767)
T 2xkj_E 676 NIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIR 716 (767)
T ss_dssp TCCHHHHHHHHHSCHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4666777776663332222 234444445555444444444
No 257
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=23.31 E-value=1.2e+02 Score=17.91 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhh
Q psy15717 39 IEQTMSSIKTVMSDLKTHLY--AKF 61 (72)
Q Consensus 39 L~~el~~i~~~m~eLK~~LY--akF 61 (72)
|+..+....-++++|+...- +||
T Consensus 68 lE~kv~kq~yEI~eL~~rV~dlgKf 92 (106)
T 1j1d_B 68 LQEKFKQQKYEINVLRNRINDNQKV 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 33333333444555543321 566
No 258
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=22.91 E-value=1.1e+02 Score=17.29 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHH-HHHHH
Q psy15717 40 EQTMSSIKTVMSD-LKTHL 57 (72)
Q Consensus 40 ~~el~~i~~~m~e-LK~~L 57 (72)
..++...+..+.. ||..|
T Consensus 71 ~~klr~Yk~dl~~~lk~~l 89 (97)
T 3onj_A 71 KAKLREWKKTIQSDIKRPL 89 (97)
T ss_dssp HHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555 55544
No 259
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.77 E-value=2.6e+02 Score=21.34 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 34 SDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 34 ~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
+.|..|+.-+++++.+|..|=+..=+
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777665443
No 260
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.58 E-value=73 Score=14.94 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMS 44 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~ 44 (72)
||++.-+++.-+.+|+..++
T Consensus 4 lee~~r~l~~ivq~lq~r~d 23 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLD 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 261
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.46 E-value=92 Score=16.09 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
...|-.....+-..|..|+..+.+.+.+.-.|++.|-.
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 34566667788889999999999999999999888753
No 262
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=22.28 E-value=1.4e+02 Score=17.96 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717 34 SDIASIEQTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 34 ~ei~~L~~el~~i~~~m~eLK~~LYa 59 (72)
++|..|+.++...+.++..||.+-=+
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ 29 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQT 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999976433
No 263
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=22.27 E-value=66 Score=20.33 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=30.9
Q ss_pred eeecchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 13 FVDLIKRNSEKSLEESRQNI-KSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 13 Fv~l~~e~a~e~LE~~ke~l-~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
-+.++..+|+--|+=..-++ .-+.+++.++.+++..+..+|+..|
T Consensus 106 ~f~LSe~QA~AILdmRL~rLT~LE~~ki~~E~~eL~~~I~~l~~IL 151 (156)
T 3ku8_A 106 LYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRIL 151 (156)
T ss_dssp EEECCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999988776443333 3466777777777777777777654
No 264
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=22.26 E-value=75 Score=14.95 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15717 39 IEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 39 L~~el~~i~~~m~eLK~ 55 (72)
+..++..|+.++..+|-
T Consensus 7 ikqelaaikkelaaikf 23 (34)
T 3r4h_A 7 IKQELAAIKKELAAIKF 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 265
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=22.25 E-value=1.3e+02 Score=17.63 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 27 ESRQNIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 27 ~~ke~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
.....++.+|-.|=++--.+..+...+|.
T Consensus 19 ~~ID~ID~~il~LL~~R~~~~~~I~~~K~ 47 (114)
T 3rmi_A 19 QSIDNFDITLIHILAERFRCTQAIGRLKA 47 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555666666664
No 266
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.19 E-value=1.7e+02 Score=20.83 Aligned_cols=43 Identities=7% Similarity=-0.002 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh
Q psy15717 18 KRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMS---DLKTHLYAK 60 (72)
Q Consensus 18 ~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~---eLK~~LYak 60 (72)
.+.....|.+..++++.++..+..++..+..++. .+++.||..
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~ 53 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNT 53 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777777777777777777766653 355556654
No 267
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=22.03 E-value=1.5e+02 Score=19.63 Aligned_cols=34 Identities=6% Similarity=0.084 Sum_probs=21.0
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 15 DLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKT 48 (72)
Q Consensus 15 ~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~ 48 (72)
..+...|....|.+.+.+.+++..|+.++..+..
T Consensus 60 ph~~~~aVSL~erQ~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 60 PHQPGDAVSLVERQVRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567778888888888888888888766543
No 268
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=22.00 E-value=96 Score=16.12 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15717 24 SLEESRQNIKSDIASIEQ 41 (72)
Q Consensus 24 ~LE~~ke~l~~ei~~L~~ 41 (72)
.||.+.-+..+.|.+|++
T Consensus 18 eler~lrk~kk~iKklEd 35 (50)
T 1a92_A 18 ELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 344444444444444444
No 269
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=21.96 E-value=45 Score=18.48 Aligned_cols=15 Identities=13% Similarity=0.563 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhCCC
Q psy15717 50 MSDLKTHLYAKFGNH 64 (72)
Q Consensus 50 m~eLK~~LYakFG~~ 64 (72)
..+||..|+.++|-.
T Consensus 27 I~~lK~ki~~~~Gip 41 (86)
T 4b6w_A 27 IESIKENVFTHFATP 41 (86)
T ss_dssp HHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 468999999999854
No 270
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=21.83 E-value=1.1e+02 Score=16.66 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKTH 56 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~~ 56 (72)
..++..++.....++.-+..+++||+.
T Consensus 43 ~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 43 NNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 356677777777777777888888763
No 271
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=21.60 E-value=1.7e+02 Score=20.33 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=36.3
Q ss_pred ccccccccceeecchhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHh
Q psy15717 4 VERNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIE------------QTMSSIKTVMSDLKTHLYA 59 (72)
Q Consensus 4 ~v~y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~------------~el~~i~~~m~eLK~~LYa 59 (72)
+..|.+||.|=.++. .|--+.+.|..++.+|..|= .-+++.-..++||.-.|-|
T Consensus 159 pLkySVaeifd~IDl--~QR~mDeQQ~~Vk~~IA~LL~qDW~~AI~~CE~LL~eTs~tLRELqDtL~a 224 (287)
T 1t98_A 159 PLKYSVAEIFDSIDL--TQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEA 224 (287)
T ss_dssp HHHHTHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeeeHHHHHhhhhH--HHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 456788998877654 46677888888888887763 3445555566666665543
No 272
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=21.53 E-value=1.1e+02 Score=22.79 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=20.8
Q ss_pred cchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 16 LIKRNSEKSLEESRQNI-KSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 16 l~~e~a~e~LE~~ke~l-~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
++..+|+-.|+=..-++ .-++.+++++.+++..+..+|+..|
T Consensus 397 lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL 439 (470)
T 3ilw_A 397 IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDIL 439 (470)
T ss_dssp CCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555444222221 2345555566666666666665554
No 273
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.53 E-value=99 Score=16.76 Aligned_cols=15 Identities=7% Similarity=0.173 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSS 45 (72)
Q Consensus 31 ~l~~ei~~L~~el~~ 45 (72)
.++.++..|..+++.
T Consensus 61 ~L~~~~~~L~~e~~~ 75 (80)
T 1hlo_A 61 YMRRKNHTHQQDIDD 75 (80)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 274
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=21.49 E-value=1.7e+02 Score=18.68 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy15717 42 TMSSIKTVMSDLKTHLYAK 60 (72)
Q Consensus 42 el~~i~~~m~eLK~~LYak 60 (72)
++-.++.+-..+..-||+|
T Consensus 22 e~~~le~ky~~~~~p~y~k 40 (193)
T 3kyp_A 22 EQMNIQKQYDEKKKPLFEK 40 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHH
Confidence 3445566667777778876
No 275
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=21.40 E-value=1.6e+02 Score=18.51 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 25 LEESRQNIKSDIASIEQTMSSIKTVMSDL 53 (72)
Q Consensus 25 LE~~ke~l~~ei~~L~~el~~i~~~m~eL 53 (72)
|+...++++..+..-..++.+++.++++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 33 (198)
T 4ghu_A 5 LESQLSRHDQMLSVHDIRLADMDLRFQVL 33 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444
No 276
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=21.22 E-value=1.3e+02 Score=17.33 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q psy15717 44 SSIKTVMSDLKTH 56 (72)
Q Consensus 44 ~~i~~~m~eLK~~ 56 (72)
+.|+..+.+|...
T Consensus 71 e~ik~k~~eL~~~ 83 (120)
T 2p32_A 71 EEFEHQQKDLEGL 83 (120)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 277
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=20.99 E-value=56 Score=16.92 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTM 43 (72)
Q Consensus 31 ~l~~ei~~L~~el 43 (72)
.|+.+|+.|+..+
T Consensus 53 ~Le~ri~~Le~~l 65 (72)
T 2er8_A 53 AIEKRFKELTRTL 65 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 278
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=20.95 E-value=93 Score=18.21 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=15.4
Q ss_pred CCcccccccccceeecchhH
Q psy15717 1 MSRVERNGAGEIFVDLIKRN 20 (72)
Q Consensus 1 ~~~~v~y~iGe~Fv~l~~e~ 20 (72)
||++++| =.|.||-+...+
T Consensus 1 M~d~lmy-q~D~yVvLEp~~ 19 (94)
T 2krx_A 1 MPDPLMY-QQDNFVVLETNQ 19 (94)
T ss_dssp CCCCCSC-CCCCEEEEESSS
T ss_pred CCchhhc-ccCCEEEecCCC
Confidence 8899998 678899876665
No 279
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2 PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens} SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A
Probab=20.90 E-value=49 Score=23.14 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhCCCccCCC
Q psy15717 47 KTVMSDLKTHLYAKFGNHIKLEA 69 (72)
Q Consensus 47 ~~~m~eLK~~LYakFG~~InLe~ 69 (72)
.....||...|-.-|||+.-+|.
T Consensus 110 ~~~~~EL~~Yl~~SFGn~tRiDY 132 (303)
T 2ixm_A 110 AAAVPEVAVYLKESVGNSTRIDY 132 (303)
T ss_dssp GGGHHHHHHHHHTSSCBTTTTEE
T ss_pred HHHHHHHHHHHHhCcCCCccCcc
Confidence 35778999999999999887764
No 280
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=20.76 E-value=1.8e+02 Score=18.73 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=28.9
Q ss_pred eecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 14 VDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKT 55 (72)
Q Consensus 14 v~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~ 55 (72)
|.++.++....+.+..+....+|.+ .....+=.-|.++|.
T Consensus 115 V~VT~EqI~~~V~~~i~~~k~~i~~--~RY~~~g~ll~~vr~ 154 (187)
T 3tl4_X 115 IEITEDQVRNYVMQYIQENKERILT--ERYKLVPGIFADVKN 154 (187)
T ss_dssp CCCCHHHHHHHHHHHHHHTHHHHHH--HGGGGHHHHHHHHHT
T ss_pred eEeCHHHHHHHHHHHHHHhHHHHHH--hccccHHHHHHHHhc
Confidence 6788899988888888777776654 344466667777776
No 281
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=20.58 E-value=1.3e+02 Score=19.43 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=22.8
Q ss_pred eecchhHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 14 VDLIKRNSEKSLEESRQNIKSDIASIEQ 41 (72)
Q Consensus 14 v~l~~e~a~e~LE~~ke~l~~ei~~L~~ 41 (72)
..++.+.|.|.|-+-|.++..-|..|-.
T Consensus 15 L~Ldld~A~E~L~rLQ~~v~~sVs~Lm~ 42 (176)
T 2l81_A 15 LFLDPDTAIERLQRLQQALEMGVSSLMA 42 (176)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999988888876643
No 282
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.50 E-value=58 Score=17.96 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhC
Q psy15717 50 MSDLKTHLYAKFG 62 (72)
Q Consensus 50 m~eLK~~LYakFG 62 (72)
..+||..|+.++|
T Consensus 31 V~~lK~ki~~~~g 43 (95)
T 1v6e_A 31 IAEFKCKLELVVG 43 (95)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHC
Confidence 4689999999998
No 283
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=20.39 E-value=1.9e+02 Score=21.27 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhh
Q psy15717 26 EESRQNIKSDIASIEQTMS-----SIKTVMSDLKTHLYAK 60 (72)
Q Consensus 26 E~~ke~l~~ei~~L~~el~-----~i~~~m~eLK~~LYak 60 (72)
+.+...+.+|+.+++.+++ +...+..-+++.+|.-
T Consensus 27 ~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~ 66 (621)
T 2vgl_A 27 EAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIF 66 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 5566778888888888887 3566777888888863
No 284
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.39 E-value=2.4e+02 Score=20.06 Aligned_cols=34 Identities=6% Similarity=0.114 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15717 30 QNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGN 63 (72)
Q Consensus 30 e~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~ 63 (72)
+.+.+++..+.++++.++.++.++...|....-.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666667777777777777776665443
No 285
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=20.35 E-value=1.1e+02 Score=22.86 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=21.3
Q ss_pred cchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 16 LIKRNSEKSLEESRQNI-KSDIASIEQTMSSIKTVMSDLKTHL 57 (72)
Q Consensus 16 l~~e~a~e~LE~~ke~l-~~ei~~L~~el~~i~~~m~eLK~~L 57 (72)
++..+|+-.|+=..-++ ..++++|.++.+++..+..+|+..|
T Consensus 435 lse~qa~~IL~m~L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL 477 (514)
T 2inr_A 435 FTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHIL 477 (514)
T ss_dssp CCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555554211111 2255566666666666666666554
No 286
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.32 E-value=1.5e+02 Score=19.73 Aligned_cols=25 Identities=8% Similarity=0.282 Sum_probs=17.3
Q ss_pred ccccccceeecchhHHHHHHHHHHH
Q psy15717 6 RNGAGEIFVDLIKRNSEKSLEESRQ 30 (72)
Q Consensus 6 ~y~iGe~Fv~l~~e~a~e~LE~~ke 30 (72)
..+=|+..+.++.......+...+.
T Consensus 53 ~V~~Gq~L~~ld~~~~~~~l~~~~a 77 (369)
T 4dk0_A 53 QVKKGDLLAEIDSTTQINTLNTRKA 77 (369)
T ss_dssp CCCSSCCCEECCCHHHHHHHHHHHH
T ss_pred EECCCCEEEEEcCHHHHHHHHHHHH
Confidence 3466899999998876665554433
No 287
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=20.31 E-value=76 Score=15.57 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhhCCC
Q psy15717 48 TVMSDLKTHLYAKFGNH 64 (72)
Q Consensus 48 ~~m~eLK~~LYakFG~~ 64 (72)
-+.++|-+.|=-|||=+
T Consensus 16 lE~~eLvk~leekfGVs 32 (40)
T 1dd4_C 16 SELAELVKKLEDKFGVT 32 (40)
T ss_dssp HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 46688888888899843
No 288
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=20.28 E-value=2.4e+02 Score=22.11 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=21.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717 17 IKRNSEKSLEESRQNIKSDIASIEQTMSS 45 (72)
Q Consensus 17 ~~e~a~e~LE~~ke~l~~ei~~L~~el~~ 45 (72)
+.+....+|.++.+++++++.+++.++..
T Consensus 797 d~~~~~~rl~k~~~~~~~~~~~~~~~l~~ 825 (862)
T 1gax_A 797 DVEEWRRRQEKRLKELLALAERSQRKLAS 825 (862)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45666778888888888888888765443
No 289
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.13 E-value=2.1e+02 Score=21.07 Aligned_cols=20 Identities=5% Similarity=0.222 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15717 31 NIKSDIASIEQTMSSIKTVM 50 (72)
Q Consensus 31 ~l~~ei~~L~~el~~i~~~m 50 (72)
.+.++|..++.++..++.++
T Consensus 127 ~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 127 EIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
Done!