RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15717
         (72 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.3 bits (67), Expect = 0.027
 Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 22/38 (57%)

Query: 22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA 59
          EK      Q +K     ++   +S+K         LYA
Sbjct: 18 EK------QALKK----LQ---ASLK---------LYA 33



 Score = 28.4 bits (62), Expect = 0.16
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 9/32 (28%)

Query: 18 KRNSEKSLEESRQNIK---SDIA---SIEQTM 43
          ++ + K L+ S   +K    D A   +I+ TM
Sbjct: 18 EKQALKKLQAS---LKLYADDSAPALAIKATM 46



 Score = 26.5 bits (57), Expect = 0.65
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 14/32 (43%)

Query: 40 EQTMSSIKTVMSDLKTHLYAKFGNHIKLEADD 71
          E+   ++K            K    +KL ADD
Sbjct: 18 EK--QALK------------KLQASLKLYADD 35


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.5 bits (63), Expect = 0.17
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 12/70 (17%)

Query: 5   ERN--GAGEI--FVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSI-KTVMSDL------ 53
           E       +I      + + ++ +L ++++ IK+ I +         K   S L      
Sbjct: 92  ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151

Query: 54  -KTHLYAKFG 62
               L A FG
Sbjct: 152 GNAQLVAIFG 161



 Score = 26.2 bits (57), Expect = 0.98
 Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 13/50 (26%)

Query: 23 KSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEADDD 72
          K L E  +   +D    ++  +            L  KF  ++    +  
Sbjct: 39 KILPEPTEGFAAD----DEPTTPA---------ELVGKFLGYVSSLVEPS 75


>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
           cyclic peptide, membrane protein; 3.80A {Mus musculus}
           PDB: 3g61_A* 3g60_A*
          Length = 1284

 Score = 26.2 bits (58), Expect = 1.0
 Identities = 8/60 (13%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 9   AGEIFVDLIKRNSEKSLEESRQNIKSDIASI-EQTMSSIKTVMS-DLKTHLYAKFGNHIK 66
           +  I+  ++   ++K L        +   ++ E+ +++I+TV++   +     ++ N+++
Sbjct: 224 SAGIWAKILSSFTDKELHAY-----AKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLE 278


>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
           SP} PDB: 2zdi_A
          Length = 117

 Score = 24.1 bits (52), Expect = 3.8
 Identities = 7/50 (14%), Positives = 21/50 (42%)

Query: 8   GAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL 57
             G + V   K  +   L+E  + ++  + ++E+    +   + +L   +
Sbjct: 58  TVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107


>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
           substrate channeling, amidotransferase, TIM-barrel AS A
           SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
           SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
           1ox4_A
          Length = 555

 Score = 24.0 bits (52), Expect = 5.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 3   RVERNGAGEIFV 14
             E  GAGEI +
Sbjct: 460 ACEALGAGEILL 471


>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
           bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
           3ez6_A* 3ez7_A
          Length = 398

 Score = 23.5 bits (51), Expect = 8.0
 Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 5/53 (9%)

Query: 13  FVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHI 65
             +L+K        E +        S     +  K   S  K      FG  +
Sbjct: 291 LPELVKL-ISDEGCECQLATNIGFMSKLSNKADHKYCHSLAKEV----FGGDM 338


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.310    0.127    0.324 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 955,835
Number of extensions: 40463
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 16
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.4 bits)