RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15717
         (72 letters)



>d1e0ba_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fission
          yeast (Schizosaccharomyces pombe), SWI6 [TaxId: 4896]}
          Length = 61

 Score = 21.3 bits (45), Expect = 9.0
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 4  VERNGAGEIFVDLIKRNSEKSLEESRQ 30
          +ER   G + + L  +N   S   S  
Sbjct: 18 IERKDDGTLEIYLTWKNGAISHHPSTI 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.127    0.324 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 219,922
Number of extensions: 7205
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 7
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (21.9 bits)