BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1572
(74 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|157119564|ref|XP_001659426.1| tar RNA binding protein (trbp) [Aedes aegypti]
gi|108875294|gb|EAT39519.1| AAEL008687-PA [Aedes aegypti]
Length = 329
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 39/46 (84%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKS 73
+G+FQ LVQL+T PVAVCHG G T +EA+T AA N++EYL++MTK+
Sbjct: 284 SGRFQCLVQLSTLPVAVCHGSGSTAKEAQTAAARNSLEYLKIMTKT 329
>gi|425626950|gb|AFX89033.1| loquacious [Mayetiola destructor]
Length = 353
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 38/46 (82%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKS 73
+GQFQ LVQL+T PVAVC G GKT + A+T AA NA+EYL++MTKS
Sbjct: 308 SGQFQCLVQLSTLPVAVCQGSGKTSKIAQTCAARNALEYLKIMTKS 353
>gi|195156001|ref|XP_002018889.1| GL26052 [Drosophila persimilis]
gi|194115042|gb|EDW37085.1| GL26052 [Drosophila persimilis]
Length = 470
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
TGQFQ LVQL+T PV VCHG G T +EA+ AA NA+EYL++MTK
Sbjct: 425 TGQFQCLVQLSTLPVGVCHGTGPTAREAQRHAAQNALEYLKIMTK 469
>gi|198477035|ref|XP_002136790.1| GA22530 [Drosophila pseudoobscura pseudoobscura]
gi|198145112|gb|EDY71816.1| GA22530 [Drosophila pseudoobscura pseudoobscura]
Length = 153
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
TGQFQ LVQL+T PV VCHG G T +EA+ AA NA+EYL++MTK
Sbjct: 108 TGQFQCLVQLSTLPVGVCHGTGPTAREAQRHAAQNALEYLKIMTK 152
>gi|198476324|ref|XP_001357331.2| GA19915 [Drosophila pseudoobscura pseudoobscura]
gi|198137644|gb|EAL34400.2| GA19915 [Drosophila pseudoobscura pseudoobscura]
Length = 477
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
TGQFQ LVQL+T PV VCHG G T +EA+ AA NA+EYL++MTK
Sbjct: 432 TGQFQCLVQLSTLPVGVCHGTGPTAREAQRHAAQNALEYLKIMTK 476
>gi|375161472|gb|AFA41504.1| tar RNA binding protein-like protein [Laodelphax striatella]
Length = 339
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/45 (66%), Positives = 38/45 (84%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
TG+ Q LVQL+T PVAVCHGQG T +EA+T AA +A+EYL++MTK
Sbjct: 294 TGKCQCLVQLSTLPVAVCHGQGGTSKEAQTEAALHALEYLKIMTK 338
>gi|312385229|gb|EFR29781.1| hypothetical protein AND_01016 [Anopheles darlingi]
Length = 158
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKS 73
+GQ+Q LVQL+T PVAVCHG G T ++A+ +AA N++EYL++MTKS
Sbjct: 113 SGQYQCLVQLSTMPVAVCHGTGPTVRDAQLLAARNSLEYLKIMTKS 158
>gi|158298694|ref|XP_318876.4| AGAP009781-PA [Anopheles gambiae str. PEST]
gi|157014008|gb|EAA14308.5| AGAP009781-PA [Anopheles gambiae str. PEST]
Length = 341
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 37/45 (82%)
Query: 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKS 73
G+FQ LVQL+T PVAVCHG G + QEA++ AA N++EYL++MTK
Sbjct: 297 GKFQCLVQLSTMPVAVCHGSGNSIQEAQSYAARNSLEYLKIMTKP 341
>gi|195398117|ref|XP_002057671.1| GJ17975 [Drosophila virilis]
gi|194141325|gb|EDW57744.1| GJ17975 [Drosophila virilis]
Length = 481
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+GQFQ LVQL+T PV VCHG G T EA+ AA NA+EYL++MTK
Sbjct: 436 SGQFQCLVQLSTLPVGVCHGTGSTTSEAQRHAAQNALEYLKIMTK 480
>gi|221328528|gb|ACM17807.1| TAR RNA-binding protein 2 isoform 2 [Fenneropenaeus chinensis]
Length = 323
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 38/51 (74%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMT 71
I L +GQ Q LVQL+T PVAVC+G G +EA++ AAHNA+EYLR+MT
Sbjct: 271 DIEELSVSGQHQCLVQLSTLPVAVCYGTGANVKEAQSAAAHNALEYLRIMT 321
>gi|328905029|gb|AEB54790.1| TRBP1 [Litopenaeus vannamei]
gi|444174849|gb|AGD81191.1| TAR RNA-binding protein 1 [Penaeus monodon]
Length = 343
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 38/51 (74%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMT 71
I L +GQ Q LVQL+T PVAVC+G G +EA++ AAHNA+EYLR+MT
Sbjct: 291 DIEELSVSGQHQCLVQLSTLPVAVCYGTGANVKEAQSAAAHNALEYLRIMT 341
>gi|221328530|gb|ACM17808.1| TAR RNA-binding protein 2 isoform 3 [Fenneropenaeus chinensis]
Length = 296
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 38/51 (74%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMT 71
I L +GQ Q LVQL+T PVAVC+G G +EA++ AAHNA+EYLR+MT
Sbjct: 244 DIEELSVSGQHQCLVQLSTLPVAVCYGTGANVKEAQSAAAHNALEYLRIMT 294
>gi|195971116|gb|ACG60900.1| TAR RNA-binding protein 2 [Fenneropenaeus chinensis]
Length = 343
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 38/51 (74%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMT 71
I L +GQ Q LVQL+T PVAVC+G G +EA++ AAHNA+EYLR+MT
Sbjct: 291 DIEELSVSGQHQCLVQLSTLPVAVCYGTGANVKEAQSAAAHNALEYLRIMT 341
>gi|194765827|ref|XP_001965027.1| GF23153 [Drosophila ananassae]
gi|190617637|gb|EDV33161.1| GF23153 [Drosophila ananassae]
Length = 472
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
TGQFQ LVQL+T PV VCHG G T +A+ AA NA+EYL++MTK
Sbjct: 427 TGQFQCLVQLSTLPVGVCHGTGPTAADAQRHAAQNALEYLKIMTK 471
>gi|19921250|ref|NP_609646.1| loquacious, isoform B [Drosophila melanogaster]
gi|17945270|gb|AAL48692.1| RE14437p [Drosophila melanogaster]
gi|22946404|gb|AAF53295.2| loquacious, isoform B [Drosophila melanogaster]
gi|71733132|gb|AAZ40191.1| R3D1-L [Drosophila melanogaster]
gi|220947980|gb|ACL86533.1| loqs-PB [synthetic construct]
gi|220957210|gb|ACL91148.1| loqs-PB [synthetic construct]
Length = 465
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+GQFQ LVQL+T PV VCHG G T +A+ AA NA+EYL++MTK
Sbjct: 420 SGQFQCLVQLSTLPVGVCHGSGPTAADAQRHAAQNALEYLKIMTK 464
>gi|24584110|ref|NP_723813.1| loquacious, isoform A [Drosophila melanogaster]
gi|7298056|gb|AAF53296.1| loquacious, isoform A [Drosophila melanogaster]
gi|71733134|gb|AAZ40192.1| R3D1-S [Drosophila melanogaster]
Length = 419
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+GQFQ LVQL+T PV VCHG G T +A+ AA NA+EYL++MTK
Sbjct: 374 SGQFQCLVQLSTLPVGVCHGSGPTAADAQRHAAQNALEYLKIMTK 418
>gi|194860648|ref|XP_001969628.1| GG23848 [Drosophila erecta]
gi|190661495|gb|EDV58687.1| GG23848 [Drosophila erecta]
Length = 464
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+GQFQ LVQL+T PV VCHG G T +A+ AA NA+EYL++MTK
Sbjct: 419 SGQFQCLVQLSTLPVGVCHGSGPTAADAQRHAAQNALEYLKIMTK 463
>gi|332271595|gb|AEE36483.1| TAR RNA-binding protein isoform 3 [Marsupenaeus japonicus]
Length = 296
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMT 71
I L +GQ Q LVQL+T PVAVC+G G +EA++ AAHNA+EYL++MT
Sbjct: 244 DIEELSVSGQHQCLVQLSTLPVAVCYGTGANVKEAQSAAAHNALEYLKIMT 294
>gi|195472607|ref|XP_002088591.1| GE18652 [Drosophila yakuba]
gi|194174692|gb|EDW88303.1| GE18652 [Drosophila yakuba]
Length = 465
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+GQFQ LVQL+T PV VCHG G T +A+ AA NA+EYL++MTK
Sbjct: 420 SGQFQCLVQLSTLPVGVCHGSGSTAADAQRHAAQNALEYLKIMTK 464
>gi|332271591|gb|AEE36481.1| TAR RNA-binding protein isoform 1 [Marsupenaeus japonicus]
Length = 343
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMT 71
I L +GQ Q LVQL+T PVAVC+G G +EA++ AAHNA+EYL++MT
Sbjct: 291 DIEELSVSGQHQCLVQLSTLPVAVCYGTGANVKEAQSAAAHNALEYLKIMT 341
>gi|195351293|ref|XP_002042169.1| GM10477 [Drosophila sechellia]
gi|194123993|gb|EDW46036.1| GM10477 [Drosophila sechellia]
Length = 464
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+GQFQ LVQL+T PV VCHG G T +A+ AA NA+EYL++MTK
Sbjct: 419 SGQFQCLVQLSTLPVGVCHGSGATAADAQRHAAQNALEYLKIMTK 463
>gi|195578966|ref|XP_002079333.1| loquacious [Drosophila simulans]
gi|194191342|gb|EDX04918.1| loquacious [Drosophila simulans]
Length = 464
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+GQFQ LVQL+T PV VCHG G T +A+ AA NA+EYL++MTK
Sbjct: 419 SGQFQCLVQLSTLPVGVCHGSGATAADAQRHAAQNALEYLKIMTK 463
>gi|195434256|ref|XP_002065119.1| GK14845 [Drosophila willistoni]
gi|194161204|gb|EDW76105.1| GK14845 [Drosophila willistoni]
Length = 512
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 34/45 (75%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
T QFQ LVQL+T PV VCHG G T EA+ AA NA+EYL++MTK
Sbjct: 467 TVQFQCLVQLSTLPVGVCHGTGSTTGEARRNAAQNALEYLKIMTK 511
>gi|195115174|ref|XP_002002139.1| GI17218 [Drosophila mojavensis]
gi|193912714|gb|EDW11581.1| GI17218 [Drosophila mojavensis]
Length = 454
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 30 QFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
QFQ LVQL+T PV VCHG G T EA+ AA NA+EYL++MTK
Sbjct: 411 QFQCLVQLSTLPVGVCHGTGSTASEAQRHAAQNALEYLKIMTK 453
>gi|332271593|gb|AEE36482.1| TAR RNA-binding protein isoform 2 [Marsupenaeus japonicus]
Length = 323
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMT 71
I L +GQ Q LVQL+T PVAVC+G G +EA+ AAHNA+EYL++MT
Sbjct: 271 DIEELSVSGQHQCLVQLSTLPVAVCYGTGANVKEAQYAAAHNALEYLKIMT 321
>gi|307215189|gb|EFN89961.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Harpegnathos saltator]
Length = 381
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 37/45 (82%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+G+FQ LVQL+T PVAVC+G G T ++A+ AA NA+EYL++MTK
Sbjct: 336 SGKFQCLVQLSTLPVAVCYGCGATSKDAQASAAQNALEYLKIMTK 380
>gi|357603048|gb|EHJ63609.1| loquacious [Danaus plexippus]
Length = 399
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/45 (60%), Positives = 37/45 (82%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
TG+ Q LVQL+T PVAVC+G G T ++A++ AA NA+EYL++MTK
Sbjct: 354 TGRSQCLVQLSTLPVAVCYGSGLTSKDAQSSAAQNALEYLKIMTK 398
>gi|332029664|gb|EGI69553.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Acromyrmex echinatior]
Length = 377
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 37/45 (82%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+G+FQ LVQL+T PVAVC+G G T ++A+ AA NA+EYL++MTK
Sbjct: 332 SGKFQCLVQLSTLPVAVCYGCGATSKDAQASAAQNALEYLKIMTK 376
>gi|307172924|gb|EFN64091.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Camponotus floridanus]
Length = 376
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 37/45 (82%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+G+FQ LVQL+T PVAVC+G G T ++A+ AA NA+EYL++MTK
Sbjct: 331 SGKFQCLVQLSTLPVAVCYGCGATSKDAQASAAQNALEYLKIMTK 375
>gi|443733452|gb|ELU17807.1| hypothetical protein CAPTEDRAFT_171815 [Capitella teleta]
Length = 364
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+G Q LVQL+T PVAVCHG T+ EA +AAHNA++YL++MT+
Sbjct: 318 SGNHQCLVQLSTMPVAVCHGTAPTRDEAHGMAAHNALQYLKIMTR 362
>gi|91091212|ref|XP_966668.1| PREDICTED: similar to tar RNA binding protein [Tribolium castaneum]
gi|270013108|gb|EFA09556.1| hypothetical protein TcasGA2_TC011666 [Tribolium castaneum]
Length = 384
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 37/45 (82%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+G+ Q LVQL+T PVAVC+G G T +EA++ AA NA+EYLR+M+K
Sbjct: 339 SGKSQCLVQLSTLPVAVCYGAGATPKEAQSAAALNALEYLRIMSK 383
>gi|304307737|ref|NP_001182008.1| loquacious [Bombyx mori]
gi|300669735|dbj|BAJ11656.1| loquacious [Bombyx mori]
Length = 382
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 36/45 (80%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
TG Q LVQL+T PVAVCHG G T ++A++ AA NA+EYL++MTK
Sbjct: 337 TGLCQCLVQLSTLPVAVCHGAGLTSKDAQSSAAQNALEYLKIMTK 381
>gi|340721164|ref|XP_003398995.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Bombus
terrestris]
Length = 388
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 37/45 (82%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+G++Q LVQL+T PVAVC+G G T ++A+ AA NA+EYL++MTK
Sbjct: 343 SGKYQCLVQLSTLPVAVCYGCGVTSKDAQASAAQNALEYLKIMTK 387
>gi|291238580|ref|XP_002739212.1| PREDICTED: Probable RISC-loading complex subunit
BRAFLDRAFT_242885-like [Saccoglossus kowalevskii]
Length = 315
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
I L +GQ Q LVQL+T PVAVCHG G+T + + AAHNA+ YL++M +
Sbjct: 255 PIEELSQSGQHQCLVQLSTTPVAVCHGTGQTVDDCRAEAAHNALLYLKIMAR 306
>gi|195049901|ref|XP_001992785.1| GH13466 [Drosophila grimshawi]
gi|193899844|gb|EDV98710.1| GH13466 [Drosophila grimshawi]
Length = 489
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
T QFQ LVQL+T PV VC G G T EA+ AA NA+EYL++MTK
Sbjct: 444 TRQFQCLVQLSTLPVGVCLGTGTTPAEAQRHAAQNALEYLKIMTK 488
>gi|242022991|ref|XP_002431920.1| tar RNA binding protein, putative [Pediculus humanus corporis]
gi|212517264|gb|EEB19182.1| tar RNA binding protein, putative [Pediculus humanus corporis]
Length = 318
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+G+ Q LVQL+ PVAVCHG G T EA++ +A NA+EYL++MTK
Sbjct: 273 SGKCQCLVQLSVLPVAVCHGTGSTSSEAQSDSALNALEYLKIMTK 317
>gi|350399379|ref|XP_003485505.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Bombus
impatiens]
Length = 381
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+G+ Q LVQL+T PVAVC+G G T ++A+ AA NA+EYL++MTK
Sbjct: 336 SGKCQCLVQLSTLPVAVCYGCGVTSKDAQASAAQNALEYLKIMTK 380
>gi|383849930|ref|XP_003700586.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Megachile
rotundata]
Length = 377
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+G+ Q LVQL+T PVAVC+G G T ++A+ AA NA+EYL++MTK
Sbjct: 332 SGKCQCLVQLSTLPVAVCYGCGVTSKDAQASAAQNALEYLKIMTK 376
>gi|380016563|ref|XP_003692250.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Apis florea]
Length = 383
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+G+ Q LVQL+T PVAVC+G G T ++A+ AA NA+EYL++MTK
Sbjct: 338 SGKCQCLVQLSTLPVAVCYGCGVTSKDAQASAAQNALEYLKIMTK 382
>gi|328784437|ref|XP_624606.3| PREDICTED: RISC-loading complex subunit tarbp2-like [Apis
mellifera]
Length = 383
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+G+ Q LVQL+T PVAVC+G G T ++A+ AA NA+EYL++MTK
Sbjct: 338 SGKCQCLVQLSTLPVAVCYGCGVTSKDAQASAAQNALEYLKIMTK 382
>gi|327282012|ref|XP_003225738.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Anolis carolinensis]
Length = 329
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L GQFQ L +L+T+P+ VCHG G + A AAHNA++YL++M K
Sbjct: 276 DIEELSVNGQFQCLAELSTHPITVCHGTGISWGNAHNDAAHNALQYLKIMAGRK 329
>gi|170037189|ref|XP_001846442.1| tar RNA binding protein [Culex quinquefasciatus]
gi|167880196|gb|EDS43579.1| tar RNA binding protein [Culex quinquefasciatus]
Length = 390
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 38/46 (82%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKS 73
+G+FQ LVQL+T PVAVCHG G T +EA+ AA N++EYL++MTK+
Sbjct: 345 SGRFQCLVQLSTLPVAVCHGSGATAKEAQAAAARNSLEYLKIMTKT 390
>gi|62897775|dbj|BAD96827.1| protein kinase, interferon-inducible double stranded RNA dependent
activator variant [Homo sapiens]
Length = 313
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+AVCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIDELSANGQYQCLAELSTSPIAVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|395732538|ref|XP_002812678.2| PREDICTED: LOW QUALITY PROTEIN: interferon-inducible double
stranded RNA-dependent protein kinase activator A [Pongo
abelii]
Length = 532
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 483 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 532
>gi|432107292|gb|ELK32706.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Myotis davidii]
Length = 288
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 235 DIEELSANGQYQCLAELSTSPITVCHGSGISCSNAQSDAAHNALQYLKIIAERK 288
>gi|114052769|ref|NP_001039335.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A [Bos taurus]
gi|426220790|ref|XP_004004595.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Ovis aries]
gi|122135712|sp|Q2HJ92.1|PRKRA_BOVIN RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A; AltName: Full=Protein
activator of the interferon-induced protein kinase;
AltName: Full=Protein kinase, interferon-inducible
double stranded RNA-dependent activator
gi|87578189|gb|AAI13247.1| Protein kinase, interferon-inducible double stranded RNA dependent
activator [Bos taurus]
gi|296490704|tpg|DAA32817.1| TPA: interferon-inducible double stranded RNA-dependent protein
kinase activator A [Bos taurus]
gi|440895619|gb|ELR47763.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Bos grunniens mutus]
Length = 313
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCSSAQSDAAHNALQYLKIIAERK 313
>gi|444723100|gb|ELW63764.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Tupaia chinensis]
Length = 220
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 167 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 220
>gi|149639721|ref|XP_001515387.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Ornithorhynchus
anatinus]
Length = 397
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 22 IAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L GQ+Q L +L++ P+ VCHG G + A T AAHNA++YL++M ++K
Sbjct: 345 IEELSINGQYQCLAELSSSPITVCHGTGISCSNAHTNAAHNALQYLKIMAETK 397
>gi|334329987|ref|XP_001377363.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Monodelphis domestica]
Length = 313
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L GQ+Q L +L+T PV VCHG G + A + AAHNA++YL++M + K
Sbjct: 260 DIEELSVNGQYQCLAELSTSPVTVCHGSGISCGSAHSDAAHNALQYLKIMAERK 313
>gi|148695266|gb|EDL27213.1| protein kinase, interferon inducible double stranded RNA dependent
activator, isoform CRA_b [Mus musculus]
Length = 210
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 157 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 210
>gi|395837197|ref|XP_003791527.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 1 [Otolemur
garnettii]
Length = 313
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|395837199|ref|XP_003791528.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Otolemur
garnettii]
Length = 288
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 235 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 288
>gi|348585626|ref|XP_003478572.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Cavia porcellus]
Length = 313
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|12849779|dbj|BAB28477.1| unnamed protein product [Mus musculus]
Length = 313
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|338715834|ref|XP_001497407.3| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Equus caballus]
gi|390464340|ref|XP_002749315.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Callithrix jacchus]
gi|403258656|ref|XP_003921869.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Saimiri
boliviensis boliviensis]
gi|410968934|ref|XP_003990954.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Felis catus]
gi|431894951|gb|ELK04744.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Pteropus alecto]
Length = 288
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 235 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 288
>gi|194382068|dbj|BAG58789.1| unnamed protein product [Homo sapiens]
Length = 200
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 147 DIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 200
>gi|6755162|ref|NP_036001.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A [Mus musculus]
gi|81882073|sp|Q9WTX2.1|PRKRA_MOUSE RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A; AltName: Full=PKR-associated
protein X; AltName: Full=PKR-associating protein X;
Short=RAX; AltName: Full=Protein activator of the
interferon-induced protein kinase; AltName: Full=Protein
kinase, interferon-inducible double stranded
RNA-dependent activator
gi|4927414|gb|AAD33098.1|AF083032_1 PKR-associating protein RAX [Mus musculus]
gi|15030117|gb|AAH11311.1| Protein kinase, interferon inducible double stranded RNA dependent
activator [Mus musculus]
gi|74196321|dbj|BAE33056.1| unnamed protein product [Mus musculus]
gi|148695265|gb|EDL27212.1| protein kinase, interferon inducible double stranded RNA dependent
activator, isoform CRA_a [Mus musculus]
Length = 313
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|403258654|ref|XP_003921868.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 1 [Saimiri
boliviensis boliviensis]
Length = 313
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|74004908|ref|XP_545545.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Canis lupus familiaris]
gi|194043952|ref|XP_001927740.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Sus scrofa]
Length = 313
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|354477724|ref|XP_003501069.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Cricetulus griseus]
Length = 313
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|149022336|gb|EDL79230.1| protein kinase, interferon inducible double stranded RNA dependent
activator, isoform CRA_b [Rattus norvegicus]
Length = 313
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|417398798|gb|JAA46432.1| Putative interferon-inducible double stranded rna-dependent protein
kinase activator a [Desmodus rotundus]
Length = 313
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|119571203|gb|EAW50818.1| hCG201528 [Homo sapiens]
Length = 288
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 235 DIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 288
>gi|213417911|ref|NP_001132989.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 2 [Homo sapiens]
gi|21739361|emb|CAD38725.1| hypothetical protein [Homo sapiens]
gi|119631440|gb|EAX11035.1| protein kinase, interferon-inducible double stranded RNA dependent
activator, isoform CRA_b [Homo sapiens]
gi|410296016|gb|JAA26608.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
Length = 302
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 249 DIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 302
>gi|62901980|gb|AAY18941.1| DKFZp564I0123 [synthetic construct]
Length = 337
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 284 DIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 337
>gi|67078460|ref|NP_001019951.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A [Rattus norvegicus]
gi|81908679|sp|Q4V8C7.1|PRKRA_RAT RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A; AltName: Full=Protein
activator of the interferon-induced protein kinase;
AltName: Full=Protein kinase, interferon-inducible
double stranded RNA-dependent activator
gi|66910624|gb|AAH97446.1| Protein kinase, interferon inducible double stranded RNA dependent
activator [Rattus norvegicus]
Length = 313
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|355786187|gb|EHH66370.1| hypothetical protein EGM_03347, partial [Macaca fascicularis]
Length = 306
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 253 DIDKLSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 306
>gi|149022335|gb|EDL79229.1| protein kinase, interferon inducible double stranded RNA dependent
activator, isoform CRA_a [Rattus norvegicus]
Length = 230
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 177 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 230
>gi|395519855|ref|XP_003764057.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Sarcophilus harrisii]
Length = 288
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L GQ+Q L +L+T P+ VCHG G + A + AAHNA++YL++M + K
Sbjct: 235 DIEELSVNGQYQCLAELSTSPITVCHGSGVSCGSAHSDAAHNALQYLKIMAERK 288
>gi|426337866|ref|XP_004032915.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Gorilla gorilla
gorilla]
Length = 288
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 235 DIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 288
>gi|343959708|dbj|BAK63711.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A [Pan troglodytes]
Length = 288
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 235 DIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 288
>gi|213417919|ref|NP_001132990.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 3 [Homo sapiens]
gi|332209456|ref|XP_003253828.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Nomascus
leucogenys]
gi|402888757|ref|XP_003907715.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Papio anubis]
gi|410035931|ref|XP_003949974.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Pan troglodytes]
gi|37955186|gb|AAP20061.1| HSD14 [Homo sapiens]
gi|119631439|gb|EAX11034.1| protein kinase, interferon-inducible double stranded RNA dependent
activator, isoform CRA_a [Homo sapiens]
Length = 288
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 235 DIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 288
>gi|4505581|ref|NP_003681.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 1 [Homo sapiens]
gi|386780754|ref|NP_001247776.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Macaca mulatta]
gi|114581964|ref|XP_515940.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Pan troglodytes]
gi|332209454|ref|XP_003253827.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 1 [Nomascus
leucogenys]
gi|397489070|ref|XP_003815560.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Pan paniscus]
gi|74735517|sp|O75569.1|PRKRA_HUMAN RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A; AltName: Full=PKR-associated
protein X; AltName: Full=PKR-associating protein X;
AltName: Full=Protein activator of the
interferon-induced protein kinase; AltName: Full=Protein
kinase, interferon-inducible double stranded
RNA-dependent activator
gi|4927416|gb|AAD33099.1|AF083033_1 PKR-associating protein RAX [Homo sapiens]
gi|3290198|gb|AAC25672.1| protein activator of the interferon-induced protein kinase [Homo
sapiens]
gi|12052756|emb|CAB66550.1| hypothetical protein [Homo sapiens]
gi|14495717|gb|AAH09470.1| Protein kinase, interferon-inducible double stranded RNA dependent
activator [Homo sapiens]
gi|30583325|gb|AAP35907.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Homo sapiens]
gi|49065476|emb|CAG38556.1| PRKRA [Homo sapiens]
gi|61362125|gb|AAX42165.1| protein kinase interferon-inducible double stranded RNA dependent
activator [synthetic construct]
gi|61362132|gb|AAX42166.1| protein kinase interferon-inducible double stranded RNA dependent
activator [synthetic construct]
gi|62630137|gb|AAX88882.1| unknown [Homo sapiens]
gi|119631441|gb|EAX11036.1| protein kinase, interferon-inducible double stranded RNA dependent
activator, isoform CRA_c [Homo sapiens]
gi|158254634|dbj|BAF83290.1| unnamed protein product [Homo sapiens]
gi|190689557|gb|ACE86553.1| protein kinase, interferon-inducible double stranded RNA dependent
activator protein [synthetic construct]
gi|307685745|dbj|BAJ20803.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [synthetic construct]
gi|380817486|gb|AFE80617.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 1 [Macaca mulatta]
gi|383422389|gb|AFH34408.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 1 [Macaca mulatta]
gi|384950022|gb|AFI38616.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 1 [Macaca mulatta]
gi|410208224|gb|JAA01331.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
gi|410264034|gb|JAA19983.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
gi|410296018|gb|JAA26609.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
gi|410341901|gb|JAA39897.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
Length = 313
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|190690921|gb|ACE87235.1| protein kinase, interferon-inducible double stranded RNA dependent
activator protein [synthetic construct]
Length = 313
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|426337864|ref|XP_004032914.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 1 [Gorilla gorilla
gorilla]
Length = 313
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|30584929|gb|AAP36730.1| Homo sapiens protein kinase, interferon-inducible double stranded
RNA dependent activator [synthetic construct]
gi|33303847|gb|AAQ02437.1| protein kinase, interferon-inducible double stranded RNA dependent
activator, partial [synthetic construct]
gi|60653869|gb|AAX29627.1| protein kinase interferon-inducible double stranded RNA dependent
activator [synthetic construct]
Length = 314
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|351699987|gb|EHB02906.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A, partial [Heterocephalus glaber]
Length = 296
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A+ AAHNA++YL+++ + K
Sbjct: 243 DIEELSANGQYQCLAELSTSPITVCHGSGISFSTAQNDAAHNALQYLKIIAERK 296
>gi|225714608|gb|ACO13150.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog [Lepeophtheirus salmonis]
Length = 334
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
G++ LVQL+T PVAVC+G G + ++AK AA +A EYLR++TK
Sbjct: 291 GEYHCLVQLSTNPVAVCYGIGISDKDAKLNAAFHACEYLRILTK 334
>gi|281352310|gb|EFB27894.1| hypothetical protein PANDA_007403 [Ailuropoda melanoleuca]
Length = 296
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 243 DIEELSVNGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 296
>gi|301766900|ref|XP_002918870.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Ailuropoda melanoleuca]
Length = 313
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSVNGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|449266107|gb|EMC77217.1| RISC-loading complex subunit TARBP2, partial [Columba livia]
Length = 283
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 22 IAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L +G Q LV+L+T P VCHG G ++ A++ AA NA++YLR+M K
Sbjct: 231 IDALSLSGLHQCLVELSTQPATVCHGSGASRDGARSQAARNALQYLRIMAGGK 283
>gi|355713679|gb|AES04751.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Mustela putorius furo]
Length = 304
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ +
Sbjct: 252 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAE 303
>gi|291391824|ref|XP_002712359.1| PREDICTED: protein kinase, interferon-inducible double stranded RNA
dependent activator [Oryctolagus cuniculus]
Length = 314
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + G +Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 261 DIEELSANGHYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 314
>gi|349803059|gb|AEQ17002.1| putative interferon-inducible double stranded rna-dependent
protein kinase activator a [Pipa carvalhoi]
Length = 83
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68
I L GQ+Q L +L+T PV VCHG G T A+ AAHNA++YL+
Sbjct: 36 DIEELSVNGQYQCLAELSTNPVTVCHGTGITCGNAQNEAAHNALQYLK 83
>gi|432933135|ref|XP_004081822.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog A-like [Oryzias
latipes]
Length = 307
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L GQ+Q L +L+T PV VCHG G + A AAH+A++Y+++M SK
Sbjct: 254 DIDELTVNGQYQCLAELSTSPVTVCHGTGISCSNAHNDAAHSALQYIKIMVSSK 307
>gi|1737216|gb|AAB38885.1| protamine-1 RNA binding protein [Mus musculus]
Length = 365
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 5 GLLDTRVCLISTNGSNSIAF---------LHSTGQFQALVQLATYPVAVCHGQGKTQQEA 55
G L + C + + S AF L +G Q LV+L+T P AVC+G T++ A
Sbjct: 287 GALGSACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPAAVCYGSATTREAA 346
Query: 56 KTVAAHNAIEYLRLMTKSK 74
+ AAH A++YLR+M SK
Sbjct: 347 RGDAAHRALQYLRIMAGSK 365
>gi|148234413|ref|NP_001079500.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Xenopus laevis]
gi|82176774|sp|Q7ZYA5.1|PRKAA_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog A
gi|27696370|gb|AAH43873.1| Rbpa protein [Xenopus laevis]
Length = 309
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L GQ+Q L +L+T P+ VCHG G + A AAHNA++YL++M K
Sbjct: 260 LSVNGQYQCLAELSTNPITVCHGTGISCGNAHNDAAHNALQYLKIMCIKK 309
>gi|3334381|sp|Q91836.1|PRKAB_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog B; AltName:
Full=Double-stranded RNA-binding protein A; AltName:
Full=XlRBPA
gi|214739|gb|AAA49947.1| RNA binding protein [Xenopus laevis]
Length = 298
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L GQ+Q L +L+T P+ VCHG G + A AAHNA++YL++M K
Sbjct: 249 LSVNGQYQCLAELSTNPITVCHGTGISCGNAHNDAAHNALQYLKIMCIKK 298
>gi|148681491|gb|EDL13438.1| mCG2026 [Mus musculus]
Length = 221
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L +G Q LV+L+T P VC+G T++ A+ AAH+A++YLR+M SK
Sbjct: 168 DIEELSLSGLCQCLVELSTQPATVCYGSATTREAARGDAAHSALQYLRIMAGSK 221
>gi|351706145|gb|EHB09064.1| RISC-loading complex subunit TARBP2 [Heterocephalus glaber]
Length = 366
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++EA+ AA A++YL++M SK
Sbjct: 317 LSMSGLCQCLVELSTQPATVCHGSATTREEARGEAARRALQYLKIMAGSK 366
>gi|359385734|ref|NP_001240724.1| RISC-loading complex subunit TARBP2 isoform 2 [Mus musculus]
gi|74188185|dbj|BAE25768.1| unnamed protein product [Mus musculus]
Length = 274
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 5 GLLDTRVCLISTNGSNSIAF---------LHSTGQFQALVQLATYPVAVCHGQGKTQQEA 55
G L + C + + S AF L +G Q LV+L+T P VC+G T++ A
Sbjct: 196 GALGSACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCYGSATTREAA 255
Query: 56 KTVAAHNAIEYLRLMTKSK 74
+ AAH A++YLR+M SK
Sbjct: 256 RGDAAHRALQYLRIMAGSK 274
>gi|395835025|ref|XP_003790485.1| PREDICTED: RISC-loading complex subunit TARBP2 [Otolemur garnettii]
Length = 366
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++EA+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREEARGEAARRALQYLKIMAGSK 366
>gi|348581071|ref|XP_003476301.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Cavia
porcellus]
Length = 366
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 5 GLLDTRVCLISTNGSNSIAF---------LHSTGQFQALVQLATYPVAVCHGQGKTQQEA 55
G L + C + + S AF L +G Q LV+L+T P VCHG T++EA
Sbjct: 288 GALGSGCCSVLSELSEEQAFHVSYLDIEELSVSGLCQCLVELSTQPATVCHGSATTREEA 347
Query: 56 KTVAAHNAIEYLRLMTKSK 74
+ AA A++YL++M SK
Sbjct: 348 RGEAARRALQYLKIMAGSK 366
>gi|166295185|ref|NP_033345.2| RISC-loading complex subunit TARBP2 isoform 1 [Mus musculus]
gi|342187071|sp|P97473.2|TRBP2_MOUSE RecName: Full=RISC-loading complex subunit TARBP2; AltName:
Full=Protamine-1 RNA-binding protein; Short=PRM-1
RNA-binding protein; AltName: Full=TAR RNA-binding
protein 2
gi|12805141|gb|AAH02028.1| TAR (HIV) RNA binding protein 2 [Mus musculus]
gi|148672020|gb|EDL03967.1| TAR (HIV) RNA binding protein 2, isoform CRA_a [Mus musculus]
Length = 365
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 5 GLLDTRVCLISTNGSNSIAF---------LHSTGQFQALVQLATYPVAVCHGQGKTQQEA 55
G L + C + + S AF L +G Q LV+L+T P VC+G T++ A
Sbjct: 287 GALGSACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCYGSATTREAA 346
Query: 56 KTVAAHNAIEYLRLMTKSK 74
+ AAH A++YLR+M SK
Sbjct: 347 RGDAAHRALQYLRIMAGSK 365
>gi|327263959|ref|XP_003216784.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Anolis
carolinensis]
Length = 383
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G +Q LV+L+T P VCHG ++ A+ AA NA++YL++M K
Sbjct: 337 SGLYQCLVELSTQPTTVCHGSATSRHAARVDAARNALQYLKIMAGGK 383
>gi|427786703|gb|JAA58803.1| Putative staufen [Rhipicephalus pulchellus]
Length = 392
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
I L G+ Q LVQL + P+AVC G T ++A+ AA A++YL++MTK
Sbjct: 340 PIDELSPDGKHQCLVQLTSLPLAVCFGTADTPEQAQVAAARCALQYLKIMTK 391
>gi|391342131|ref|XP_003745376.1| PREDICTED: probable RISC-loading complex subunit
BRAFLDRAFT_242885-like [Metaseiulus occidentalis]
Length = 335
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 34 LVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L L T P+AVC G G+T++ AK A+HNA++YL++MT+ K
Sbjct: 295 LCHLTTLPLAVCFGIGETEELAKMNASHNALQYLKIMTRRK 335
>gi|348528752|ref|XP_003451880.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Oreochromis
niloticus]
Length = 345
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G Q LV+L+T P+ VCHG A+ AAHNA++YL++M K
Sbjct: 299 SGLCQCLVELSTQPITVCHGFAPNTDGARANAAHNALQYLKIMAGGK 345
>gi|345489251|ref|XP_001601132.2| PREDICTED: probable RISC-loading complex subunit
BRAFLDRAFT_242885-like [Nasonia vitripennis]
Length = 392
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+G+ Q LVQL+T PVAVC+G G T ++A+ AA NA+EYL++MTK
Sbjct: 347 SGKCQCLVQLSTLPVAVCYGSGMTSKDAQAAAAQNALEYLKIMTK 391
>gi|395541537|ref|XP_003772699.1| PREDICTED: RISC-loading complex subunit TARBP2 [Sarcophilus
harrisii]
Length = 549
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA +A++YL++M K
Sbjct: 500 LSLSGLCQCLVELSTQPATVCHGSAPTREAARGEAARHALQYLKIMAGGK 549
>gi|410964559|ref|XP_003988821.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Felis
catus]
gi|410964561|ref|XP_003988822.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 3 [Felis
catus]
Length = 345
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 296 LSLSGLCQCLVELSTQPATVCHGSAATREAARGEAACRALQYLKIMAGSK 345
>gi|410964557|ref|XP_003988820.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Felis
catus]
Length = 366
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSAATREAARGEAACRALQYLKIMAGSK 366
>gi|229891681|sp|B6P4U0.1|TRBP2_BRAFL RecName: Full=Probable RISC-loading complex subunit
BRAFLDRAFT_242885
Length = 319
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
I L ++ Q LVQL T PV VCHGQG T+ EA AAHNA++YL+LM +
Sbjct: 266 DIEELSASSLHQCLVQLTTQPVTVCHGQGHTRDEAHAHAAHNALQYLKLMVR 317
>gi|348519647|ref|XP_003447341.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog [Oreochromis
niloticus]
Length = 300
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
I L GQ+Q L +L+T PV VCHG G + A AAH+A++Y++ K
Sbjct: 249 DIDELTVNGQYQCLAELSTTPVTVCHGTGISCSNAHNDAAHSALQYIKASIK 300
>gi|321468306|gb|EFX79291.1| hypothetical protein DAPPUDRAFT_24493 [Daphnia pulex]
Length = 254
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+G++Q L+ ++ P+AV G G + +EA+ AA +A+ YL+LMTK
Sbjct: 209 SGRYQCLLTMSLTPIAVVCGSGSSYEEAQKEAAFSALHYLKLMTK 253
>gi|390336600|ref|XP_797998.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog A-like
[Strongylocentrotus purpuratus]
Length = 159
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70
G +Q V+L T PV VC G ++ +A +AHNA++YL++M
Sbjct: 93 GHYQCFVRLQTAPVTVCFANGLSRNDAMETSAHNALQYLKVM 134
>gi|313243028|emb|CBY39738.1| unnamed protein product [Oikopleura dioica]
Length = 324
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 21 SIAFL-----HSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
S+AFL + G Q +L T PV+V +G+G T EA AA NA++YL++M K
Sbjct: 262 SVAFLDIKERSTMGLVQCFARLTTMPVSVLNGEGPTLAEAHNHAARNALQYLKIMGAEK 320
>gi|313229252|emb|CBY23838.1| unnamed protein product [Oikopleura dioica]
Length = 343
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 21 SIAFLH-----STGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
S+AFL + G Q +L T PV+V +G+G T EA AA NA++YL++M K
Sbjct: 281 SVAFLDIKERSTMGLVQCFARLTTMPVSVLNGEGPTLAEAHNHAARNALQYLKIMGAEK 339
>gi|169146118|emb|CAQ15450.1| novel protein similar to H.sapiens PRKRA, protein kinase,
interferon-inducible double stranded RNA dependent
activator (PRKRA, zgc:162619) [Danio rerio]
Length = 300
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70
I L GQ+Q LV+L+T PV VCHG G T A AAHNA++Y++++
Sbjct: 247 DIDELTVNGQYQCLVELSTRPVTVCHGSGVTSSNAHNAAAHNALQYIKMV 296
>gi|148235737|ref|NP_001082830.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog [Danio rerio]
gi|134025033|gb|AAI35035.1| Zgc:162619 protein [Danio rerio]
Length = 282
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70
I L GQ+Q LV+L+T PV VCHG G T A AAHNA++Y++++
Sbjct: 229 DIDELTVNGQYQCLVELSTRPVTVCHGSGVTSSNAHNAAAHNALQYIKMV 278
>gi|251764897|sp|B0V3F8.2|PRKRA_DANRE RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog
gi|169146119|emb|CAQ15451.1| novel protein similar to H.sapiens PRKRA, protein kinase,
interferon-inducible double stranded RNA dependent
activator (PRKRA, zgc:162619) [Danio rerio]
Length = 282
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70
I L GQ+Q LV+L+T PV VCHG G T A AAHNA++Y++++
Sbjct: 229 DIDELTVNGQYQCLVELSTRPVTVCHGSGVTSSNAHNAAAHNALQYIKMV 278
>gi|427793309|gb|JAA62106.1| Putative staufen, partial [Rhipicephalus pulchellus]
Length = 202
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 14 ISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+ST G + + L L L P+AVC G T ++A+ AA A++YL++MTK
Sbjct: 146 LSTAGIDYVGLLREIADXXXLTSL---PLAVCFGTADTPEQAQVAAARCALQYLKIMTK 201
>gi|281363621|ref|NP_001163185.1| staufen, isoform C [Drosophila melanogaster]
gi|33636635|gb|AAQ23615.1| LD13210p [Drosophila melanogaster]
gi|272432536|gb|ACZ94457.1| staufen, isoform C [Drosophila melanogaster]
Length = 1025
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T+P +CHG GK+ +E++ AA N
Sbjct: 958 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTHPPQICHGVGKSSEESQNDAASN 1010
Query: 63 AIEYL 67
A++ L
Sbjct: 1011 ALKIL 1015
>gi|17136520|ref|NP_476751.1| staufen, isoform A [Drosophila melanogaster]
gi|71153175|sp|P25159.2|STAU_DROME RecName: Full=Maternal effect protein staufen
gi|7302672|gb|AAF57752.1| staufen, isoform A [Drosophila melanogaster]
Length = 1026
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T+P +CHG GK+ +E++ AA N
Sbjct: 959 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTHPPQICHGVGKSSEESQNDAASN 1011
Query: 63 AIEYL 67
A++ L
Sbjct: 1012 ALKIL 1016
>gi|241779179|ref|XP_002399859.1| tar RNA-binding protein, putative [Ixodes scapularis]
gi|215508538|gb|EEC17992.1| tar RNA-binding protein, putative [Ixodes scapularis]
Length = 273
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
I L + G+ Q LVQL + P+AVC G ++ ++A+ AA +A++YL++MTK
Sbjct: 221 PIDELSTDGKHQCLVQLTSLPLAVCFGTAESPEQARAAAARSALQYLKIMTK 272
>gi|195584465|ref|XP_002082027.1| GD25416 [Drosophila simulans]
gi|194194036|gb|EDX07612.1| GD25416 [Drosophila simulans]
Length = 1035
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T+P +CHG GK+ +E++ AA N
Sbjct: 968 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTHPPQICHGVGKSSEESQNDAASN 1020
Query: 63 AIEYL 67
A++ L
Sbjct: 1021 ALKIL 1025
>gi|194880953|ref|XP_001974617.1| GG20993 [Drosophila erecta]
gi|190657804|gb|EDV55017.1| GG20993 [Drosophila erecta]
Length = 1034
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T+P +CHG GK+ +E++ AA N
Sbjct: 967 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTHPPQICHGVGKSSEESQNDAASN 1019
Query: 63 AIEYL 67
A++ L
Sbjct: 1020 ALKIL 1024
>gi|195335472|ref|XP_002034389.1| GM19927 [Drosophila sechellia]
gi|194126359|gb|EDW48402.1| GM19927 [Drosophila sechellia]
Length = 1035
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T+P +CHG GK+ +E++ AA N
Sbjct: 968 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTHPPQICHGVGKSSEESQNDAASN 1020
Query: 63 AIEYL 67
A++ L
Sbjct: 1021 ALKIL 1025
>gi|195487615|ref|XP_002091980.1| GE13936 [Drosophila yakuba]
gi|194178081|gb|EDW91692.1| GE13936 [Drosophila yakuba]
Length = 1037
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T+P +CHG GK+ +E++ AA N
Sbjct: 970 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTHPPQICHGVGKSSEESQNDAASN 1022
Query: 63 AIEYL 67
A++ L
Sbjct: 1023 ALKIL 1027
>gi|158506|gb|AAA73062.1| unnamed protein product [Drosophila melanogaster]
Length = 1026
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T+P +CHG GK+ +E++ AA N
Sbjct: 959 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTHPPQICHGVGKSSEESQNDAASN 1011
Query: 63 AIEYL 67
A++ L
Sbjct: 1012 ALKIL 1016
>gi|24654775|ref|NP_725748.1| staufen, isoform B [Drosophila melanogaster]
gi|7302673|gb|AAF57753.1| staufen, isoform B [Drosophila melanogaster]
gi|27819870|gb|AAO24983.1| LP08764p [Drosophila melanogaster]
Length = 914
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T+P +CHG GK+ +E++ AA N
Sbjct: 847 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTHPPQICHGVGKSSEESQNDAASN 899
Query: 63 AIEYL 67
A++ L
Sbjct: 900 ALKIL 904
>gi|432112569|gb|ELK35285.1| RISC-loading complex subunit TARBP2 [Myotis davidii]
Length = 366
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T PV VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPVTVCHGSAATREAARGEAARRALQYLKIMAGSK 366
>gi|354490187|ref|XP_003507241.1| PREDICTED: RISC-loading complex subunit TARBP2 [Cricetulus griseus]
gi|344239257|gb|EGV95360.1| RISC-loading complex subunit TARBP2 [Cricetulus griseus]
Length = 365
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 5 GLLDTRVCLISTNGSNSIAF---------LHSTGQFQALVQLATYPVAVCHGQGKTQQEA 55
G L + C + + S AF L +G Q LV+L+T P VCHG T++ A
Sbjct: 287 GTLGSACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAA 346
Query: 56 KTVAAHNAIEYLRLMTKSK 74
+ AA A++YLR+M SK
Sbjct: 347 RGEAARRALQYLRIMAGSK 365
>gi|71895927|ref|NP_001025646.1| RISC-loading complex subunit tarbp2 [Xenopus (Silurana) tropicalis]
gi|60550973|gb|AAH91619.1| TAR (HIV-1) RNA binding protein 2 [Xenopus (Silurana) tropicalis]
Length = 331
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G +Q LV+L+T P VCHG T+ A+ AAHNA++YL++M K
Sbjct: 285 SGLYQCLVELSTQPTTVCHGSATTRDAARANAAHNALQYLKIMAGGK 331
>gi|229891738|sp|Q5BJ52.2|TRBP2_XENTR RecName: Full=RISC-loading complex subunit tarbp2
Length = 351
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G +Q LV+L+T P VCHG T+ A+ AAHNA++YL++M K
Sbjct: 305 SGLYQCLVELSTQPTTVCHGSATTRDAARANAAHNALQYLKIMAGGK 351
>gi|403296815|ref|XP_003939290.1| PREDICTED: RISC-loading complex subunit TARBP2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 5 GLLDTRVCLISTNGSNSIAF---------LHSTGQFQALVQLATYPVAVCHGQGKTQQEA 55
G L C + T S AF L +G Q LV+L+T P VCHG T++ A
Sbjct: 288 GALGPACCRVLTELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAA 347
Query: 56 KTVAAHNAIEYLRLMTKSK 74
+ AA A++YL++M SK
Sbjct: 348 RGEAARRALQYLKIMAGSK 366
>gi|387018942|gb|AFJ51589.1| RISC-loading complex subunit TARBP2 [Crotalus adamanteus]
Length = 360
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G FQ LV+L+T P VCHG ++ A+ AA NA++YLR+M K
Sbjct: 314 SGLFQCLVELSTQPATVCHGSAISRSAARADAARNALQYLRIMAGGK 360
>gi|107904|pir||A38430 trans-activation-responsive RNA-binding protein - human (fragment)
Length = 363
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 314 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 363
>gi|19743838|ref|NP_004169.3| RISC-loading complex subunit TARBP2 isoform b [Homo sapiens]
gi|85068512|ref|NP_599151.2| RISC-loading complex subunit TARBP2 isoform b [Homo sapiens]
gi|332839227|ref|XP_003313704.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Pan
troglodytes]
gi|332839229|ref|XP_003313705.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 3 [Pan
troglodytes]
gi|426372759|ref|XP_004053285.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Gorilla
gorilla gorilla]
gi|426372761|ref|XP_004053286.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 3 [Gorilla
gorilla gorilla]
gi|119617123|gb|EAW96717.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_a [Homo sapiens]
Length = 345
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 296 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345
>gi|339909|gb|AAA36765.1| TAR RNA binding protein [Homo sapiens]
Length = 345
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 296 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345
>gi|109096950|ref|XP_001106036.1| PREDICTED: RISC-loading complex subunit TARBP2 [Macaca mulatta]
Length = 366
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|19743840|ref|NP_599150.1| RISC-loading complex subunit TARBP2 isoform a [Homo sapiens]
gi|332839225|ref|XP_003313703.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Pan
troglodytes]
gi|397521981|ref|XP_003831059.1| PREDICTED: RISC-loading complex subunit TARBP2 [Pan paniscus]
gi|441632123|ref|XP_004093097.1| PREDICTED: LOW QUALITY PROTEIN: RISC-loading complex subunit TARBP2
[Nomascus leucogenys]
gi|209572714|sp|Q15633.3|TRBP2_HUMAN RecName: Full=RISC-loading complex subunit TARBP2; AltName:
Full=TAR RNA-binding protein 2; AltName:
Full=Trans-activation-responsive RNA-binding protein
gi|13543405|gb|AAH05860.1| TAR (HIV-1) RNA binding protein 2 [Homo sapiens]
gi|30583119|gb|AAP35804.1| TAR (HIV) RNA binding protein 2 [Homo sapiens]
gi|60656097|gb|AAX32612.1| TAR RNA binding protein 2 [synthetic construct]
gi|119617126|gb|EAW96720.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_c [Homo sapiens]
gi|123993747|gb|ABM84475.1| Tar (HIV-1) RNA binding protein 2 [synthetic construct]
gi|123994511|gb|ABM84857.1| Tar (HIV-1) RNA binding protein 2 [synthetic construct]
gi|208967915|dbj|BAG73796.1| TAR (HIV-1) RNA binding protein 2 [synthetic construct]
gi|410213820|gb|JAA04129.1| TAR (HIV-1) RNA binding protein 2 [Pan troglodytes]
gi|410248696|gb|JAA12315.1| TAR (HIV-1) RNA binding protein 2 [Pan troglodytes]
gi|410292692|gb|JAA24946.1| TAR (HIV-1) RNA binding protein 2 [Pan troglodytes]
gi|410338861|gb|JAA38377.1| TAR (HIV-1) RNA binding protein 2 [Pan troglodytes]
Length = 366
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|426372757|ref|XP_004053284.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Gorilla
gorilla gorilla]
Length = 366
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|158254910|dbj|BAF83426.1| unnamed protein product [Homo sapiens]
Length = 366
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|7412848|gb|AAB50581.2| TAR RNA binding protein 2 [Homo sapiens]
Length = 366
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|402886167|ref|XP_003906509.1| PREDICTED: RISC-loading complex subunit TARBP2 [Papio anubis]
gi|355564287|gb|EHH20787.1| TAR RNA-binding protein 2 [Macaca mulatta]
gi|383421127|gb|AFH33777.1| RISC-loading complex subunit TARBP2 isoform a [Macaca mulatta]
gi|384939668|gb|AFI33439.1| RISC-loading complex subunit TARBP2 isoform a [Macaca mulatta]
Length = 366
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|30585201|gb|AAP36873.1| Homo sapiens TAR (HIV) RNA binding protein 2 [synthetic construct]
gi|60653021|gb|AAX29205.1| TAR [synthetic construct]
Length = 367
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|355786146|gb|EHH66329.1| TAR RNA-binding protein 2 [Macaca fascicularis]
Length = 366
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|149714848|ref|XP_001504588.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 3
[Equus caballus]
gi|149714851|ref|XP_001504586.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 2
[Equus caballus]
Length = 345
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 296 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345
>gi|440900674|gb|ELR51753.1| RISC-loading complex subunit TARBP2 [Bos grunniens mutus]
Length = 364
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 5 GLLDTRVCLISTNGSNSIAF-------LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKT 57
G L C + + S AF L +G Q LV+L+T P VCHG T++ A+
Sbjct: 288 GALGPACCSVLSELSEEQAFHVSYLDELSLSGLCQCLVELSTQPATVCHGSAATREAARG 347
Query: 58 VAAHNAIEYLRLMTKSK 74
AA A++YL++M SK
Sbjct: 348 EAARRALQYLKIMAGSK 364
>gi|426224364|ref|XP_004006341.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Ovis
aries]
Length = 345
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 296 LSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIMAGSK 345
>gi|426224362|ref|XP_004006340.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Ovis
aries]
Length = 366
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIMAGSK 366
>gi|335287861|ref|XP_003355458.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Sus
scrofa]
Length = 345
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 296 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345
>gi|149714845|ref|XP_001504584.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 1
[Equus caballus]
Length = 366
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|345791598|ref|XP_003433515.1| PREDICTED: LOW QUALITY PROTEIN: RISC-loading complex subunit TARBP2
[Canis lupus familiaris]
Length = 366
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|417399750|gb|JAA46862.1| Putative staufen [Desmodus rotundus]
Length = 366
Score = 38.5 bits (88), Expect = 0.56, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 5 GLLDTRVCLISTNGSNSIAF---------LHSTGQFQALVQLATYPVAVCHGQGKTQQEA 55
G L C I + S AF L +G Q LV+L+T P VCHG T++ A
Sbjct: 288 GALGPACCSILSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAA 347
Query: 56 KTVAAHNAIEYLRLMTKSK 74
+ AA A++YL++M SK
Sbjct: 348 RGEAARRALQYLKIMAGSK 366
>gi|296211840|ref|XP_002752581.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1
[Callithrix jacchus]
Length = 366
Score = 38.5 bits (88), Expect = 0.56, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|164448622|ref|NP_001069146.2| RISC-loading complex subunit TARBP2 [Bos taurus]
gi|229891741|sp|Q0IIG6.2|TRBP2_BOVIN RecName: Full=RISC-loading complex subunit TARBP2
gi|296487914|tpg|DAA30027.1| TPA: RISC-loading complex subunit TARBP2 [Bos taurus]
Length = 366
Score = 38.5 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIMAGSK 366
>gi|195383442|ref|XP_002050435.1| stau [Drosophila virilis]
gi|194145232|gb|EDW61628.1| stau [Drosophila virilis]
Length = 1100
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T P +CHG GK+ +E++ AA N
Sbjct: 1033 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTTPPQICHGVGKSCEESQNAAARN 1085
Query: 63 AIEYL 67
A++ L
Sbjct: 1086 ALKIL 1090
>gi|291389267|ref|XP_002711070.1| PREDICTED: TAR RNA binding protein 2 [Oryctolagus cuniculus]
Length = 366
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|119617124|gb|EAW96718.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_b [Homo sapiens]
gi|119617125|gb|EAW96719.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_b [Homo sapiens]
Length = 222
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 169 DIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 222
>gi|7229532|gb|AAF42865.1|AF225924_1 staufen [Drosophila virilis]
Length = 1062
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T P +CHG GK+ +E++ AA N
Sbjct: 995 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTTPPQICHGVGKSCEESQNAAARN 1047
Query: 63 AIEYL 67
A++ L
Sbjct: 1048 ALKIL 1052
>gi|395744363|ref|XP_002823375.2| PREDICTED: RISC-loading complex subunit TARBP2 [Pongo abelii]
Length = 364
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 315 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 364
>gi|89114096|gb|ABD61639.1| R3D1 [Drosophila melanogaster]
Length = 407
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 28 TGQFQALVQLATYPVAVCHG 47
+GQFQ LVQL+T PV VCHG
Sbjct: 387 SGQFQCLVQLSTLPVGVCHG 406
>gi|89114084|gb|ABD61633.1| R3D1 [Drosophila melanogaster]
gi|89114086|gb|ABD61634.1| R3D1 [Drosophila melanogaster]
gi|89114088|gb|ABD61635.1| R3D1 [Drosophila melanogaster]
gi|89114090|gb|ABD61636.1| R3D1 [Drosophila melanogaster]
gi|89114092|gb|ABD61637.1| R3D1 [Drosophila melanogaster]
gi|89114094|gb|ABD61638.1| R3D1 [Drosophila melanogaster]
gi|89114098|gb|ABD61640.1| R3D1 [Drosophila melanogaster]
Length = 407
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 28 TGQFQALVQLATYPVAVCHG 47
+GQFQ LVQL+T PV VCHG
Sbjct: 387 SGQFQCLVQLSTLPVGVCHG 406
>gi|89114100|gb|ABD61641.1| R3D1 [Drosophila simulans]
gi|89114102|gb|ABD61642.1| R3D1 [Drosophila simulans]
gi|89114104|gb|ABD61643.1| R3D1 [Drosophila simulans]
gi|89114106|gb|ABD61644.1| R3D1 [Drosophila simulans]
gi|89114108|gb|ABD61645.1| R3D1 [Drosophila simulans]
gi|89114110|gb|ABD61646.1| R3D1 [Drosophila simulans]
gi|89114112|gb|ABD61647.1| R3D1 [Drosophila simulans]
Length = 407
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 28 TGQFQALVQLATYPVAVCHG 47
+GQFQ LVQL+T PV VCHG
Sbjct: 387 SGQFQCLVQLSTLPVGVCHG 406
>gi|89114114|gb|ABD61648.1| R3D1 [Drosophila simulans]
Length = 407
Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 28 TGQFQALVQLATYPVAVCHG 47
+GQFQ LVQL+T PV VCHG
Sbjct: 387 SGQFQCLVQLSTLPVGVCHG 406
>gi|198457607|ref|XP_001360731.2| GA19106 [Drosophila pseudoobscura pseudoobscura]
gi|198136042|gb|EAL25306.2| GA19106 [Drosophila pseudoobscura pseudoobscura]
Length = 1008
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 30 QFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYL 67
+F +V L+T P +CHG GK+ E++ AA NA++ L
Sbjct: 961 EFLTIVTLSTNPPQICHGVGKSSDESQNDAARNALKIL 998
>gi|311255463|ref|XP_003126242.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Sus
scrofa]
Length = 366
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 313 DIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|431921617|gb|ELK18969.1| RISC-loading complex subunit TARBP2 [Pteropus alecto]
Length = 366
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 313 DIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|281341836|gb|EFB17420.1| hypothetical protein PANDA_012447 [Ailuropoda melanoleuca]
Length = 350
Score = 37.7 bits (86), Expect = 0.86, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M S+
Sbjct: 301 LSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIMAGSR 350
>gi|195150825|ref|XP_002016351.1| GL10536 [Drosophila persimilis]
gi|194110198|gb|EDW32241.1| GL10536 [Drosophila persimilis]
Length = 638
Score = 37.7 bits (86), Expect = 0.96, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 30 QFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYL 67
+F +V L+T P +CHG GK+ E++ AA NA++ L
Sbjct: 591 EFLTIVTLSTNPPQICHGVGKSSDESQNDAARNALKIL 628
>gi|198415842|ref|XP_002129369.1| PREDICTED: similar to TAR (HIV) RNA binding protein 2 [Ciona
intestinalis]
Length = 326
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70
G Q L++++T P V HG+GK+ ++ + AA NA+EYL +
Sbjct: 257 GDRQCLLEVSTQPPCVLHGRGKSLNQSHSDAAVNALEYLTIF 298
>gi|444513890|gb|ELV10475.1| RISC-loading complex subunit TARBP2 [Tupaia chinensis]
Length = 380
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 327 DIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 380
>gi|301775807|ref|XP_002923310.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Ailuropoda
melanoleuca]
Length = 366
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M S+
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIMAGSR 366
>gi|77917582|ref|NP_001030113.1| RISC-loading complex subunit TARBP2 [Rattus norvegicus]
gi|123780849|sp|Q3SWU0.1|TRBP2_RAT RecName: Full=RISC-loading complex subunit TARBP2
gi|74356245|gb|AAI04691.1| TAR (HIV-1) RNA binding protein 2 [Rattus norvegicus]
gi|149031914|gb|EDL86826.1| TAR (HIV) RNA binding protein 2 [Rattus norvegicus]
Length = 365
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 5 GLLDTRVCLISTNGSNSIAF---------LHSTGQFQALVQLATYPVAVCHGQGKTQQEA 55
G L + C I + S AF L +G Q LV+L+T P VC+G T++ A
Sbjct: 287 GSLGSACCSILSELSAEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCYGSATTREAA 346
Query: 56 KTVAAHNAIEYLRLMTKSK 74
+ AA A++YLR+M SK
Sbjct: 347 RGDAARRALQYLRIMAGSK 365
>gi|194755679|ref|XP_001960111.1| GF13203 [Drosophila ananassae]
gi|190621409|gb|EDV36933.1| GF13203 [Drosophila ananassae]
Length = 1036
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 30 QFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYL 67
+F +V L+T P +CHG GK+ E++ AA NA++ L
Sbjct: 989 EFLTIVTLSTNPPQICHGVGKSSDESQNDAARNALKIL 1026
>gi|195436531|ref|XP_002066221.1| GK22054 [Drosophila willistoni]
gi|194162306|gb|EDW77207.1| GK22054 [Drosophila willistoni]
Length = 1106
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T P +CHG GK+ +E++ AA +
Sbjct: 1039 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTNPPQICHGVGKSSEESQNDAARS 1091
Query: 63 AIEYL 67
A++ L
Sbjct: 1092 ALKIL 1096
>gi|7229534|gb|AAF42866.1|AF225925_1 staufen [Musca domestica]
Length = 985
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 30 QFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70
+F ++V ++T P +CHG G QE++ AA NA++ L M
Sbjct: 941 EFLSIVMISTNPPQICHGIGANAQESQEDAARNALKILSEM 981
>gi|328713081|ref|XP_003244986.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like isoform 4 [Acyrthosiphon
pisum]
Length = 443
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 17/70 (24%)
Query: 20 NSIAFLHSTGQ-----------------FQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
N+I FL + G+ + +VQLA P+ + G G+T ++AK +AA+
Sbjct: 374 NAIKFLETIGEEEHFCITYLLMSNKSFDIEIVVQLAVTPLLLFIGSGRTTEDAKEMAAYV 433
Query: 63 AIEYLRLMTK 72
A+ YL+L+ +
Sbjct: 434 ALTYLKLLLQ 443
>gi|328713075|ref|XP_001942593.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like isoform 1 [Acyrthosiphon
pisum]
gi|328713077|ref|XP_003244984.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like isoform 2 [Acyrthosiphon
pisum]
gi|328713079|ref|XP_003244985.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like isoform 3 [Acyrthosiphon
pisum]
Length = 427
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 17/70 (24%)
Query: 20 NSIAFLHSTGQ-----------------FQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
N+I FL + G+ + +VQLA P+ + G G+T ++AK +AA+
Sbjct: 358 NAIKFLETIGEEEHFCITYLLMSNKSFDIEIVVQLAVTPLLLFIGSGRTTEDAKEMAAYV 417
Query: 63 AIEYLRLMTK 72
A+ YL+L+ +
Sbjct: 418 ALTYLKLLLQ 427
>gi|41053389|ref|NP_956291.1| RISC-loading complex subunit tarbp2 [Danio rerio]
gi|82240186|sp|Q7SXR1.1|TRBP2_DANRE RecName: Full=RISC-loading complex subunit tarbp2
gi|33311802|gb|AAH55390.1| TAR (HIV) RNA binding protein 2 [Danio rerio]
Length = 346
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G +Q LV+L+T P+ VCHG + A+ AAHNA++YL++M K
Sbjct: 300 SGLYQCLVELSTQPITVCHGFASSLDAARASAAHNALQYLKIMAGGK 346
>gi|195027427|ref|XP_001986584.1| GH20445 [Drosophila grimshawi]
gi|193902584|gb|EDW01451.1| GH20445 [Drosophila grimshawi]
Length = 1053
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T P +CHG GK +E++ AA N
Sbjct: 986 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTNPPQICHGVGKVCEESQNAAAGN 1038
Query: 63 AIEYL 67
A++ L
Sbjct: 1039 ALKIL 1043
>gi|355723251|gb|AES07832.1| TAR RNA binding protein 2 [Mustela putorius furo]
Length = 223
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKS 73
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M S
Sbjct: 175 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGS 223
>gi|229891737|sp|Q6GPZ1.2|TRBP2_XENLA RecName: Full=RISC-loading complex subunit tarbp2
Length = 351
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G Q LV+L+T P VCHG T+ A+ AAHNA++YL++M K
Sbjct: 305 SGLCQCLVELSTQPTTVCHGSATTRDAARANAAHNALQYLKIMAGGK 351
>gi|342326246|gb|AEL23038.1| TAR RNA-binding protein 2 [Cherax quadricarinatus]
Length = 111
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHG 47
I L TGQ Q LVQL+T PVAVC+G
Sbjct: 85 DIEELSVTGQHQCLVQLSTLPVAVCYG 111
>gi|148232429|ref|NP_001085574.1| RISC-loading complex subunit tarbp2 [Xenopus laevis]
gi|49115615|gb|AAH72963.1| MGC82499 protein [Xenopus laevis]
Length = 331
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G Q LV+L+T P VCHG T+ A+ AAHNA++YL++M K
Sbjct: 285 SGLCQCLVELSTQPTTVCHGSATTRDAARANAAHNALQYLKIMAGGK 331
>gi|195121068|ref|XP_002005043.1| GI19273 [Drosophila mojavensis]
gi|193910111|gb|EDW08978.1| GI19273 [Drosophila mojavensis]
Length = 1100
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T P +CHG G + +E++ AA N
Sbjct: 1033 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTTPPQICHGVGTSCEESQNAAARN 1085
Query: 63 AIEYL 67
A++ L
Sbjct: 1086 ALKIL 1090
>gi|157116156|ref|XP_001658385.1| staufen [Aedes aegypti]
gi|108876611|gb|EAT40836.1| AAEL007470-PA [Aedes aegypti]
Length = 1103
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYL 67
G++ LV L+T P +CHG G + +E+ AA A+E L
Sbjct: 960 GEYLTLVTLSTEPPQLCHGSGASLEESHDEAARGALEIL 998
>gi|410896914|ref|XP_003961944.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog A-like [Takifugu
rubripes]
Length = 304
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70
G +Q L +L+T PV VCHG G + A AAH+A++Y+++M
Sbjct: 260 GMYQCLAELSTSPVVVCHGAGISCSNAHNAAAHSALQYIKIM 301
>gi|375161470|gb|AFA41503.1| stau [Laodelphax striatella]
Length = 743
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 30 QFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70
+F +LV L+T P VCHG GKT ++ AA A+ L M
Sbjct: 662 EFLSLVSLSTEPPHVCHGSGKTTDQSHDQAALTALRALSKM 702
>gi|109097111|ref|XP_001110800.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Macaca mulatta]
Length = 251
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQG 49
L + GQ+Q L +L+T P+ VCHG G
Sbjct: 221 LSANGQYQCLAELSTNPITVCHGSG 245
>gi|158285608|ref|XP_308394.4| AGAP007478-PA [Anopheles gambiae str. PEST]
gi|157020074|gb|EAA04622.5| AGAP007478-PA [Anopheles gambiae str. PEST]
Length = 1149
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYL 67
G++ LV L+T P +CHG G + QE+ AA A+E L
Sbjct: 1085 GEYLTLVILSTEPPQLCHGSGASLQESHDEAARGALEIL 1123
>gi|82268346|sp|Q4SS66.1|TRBP2_TETNG RecName: Full=RISC-loading complex subunit tarbp2
gi|47222849|emb|CAF96516.1| unnamed protein product [Tetraodon nigroviridis]
Length = 345
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G Q LV+L+T P+ VCHG + A+ AAHNA++YL++M K
Sbjct: 299 SGLCQCLVELSTQPITVCHGCASSTDAARASAAHNALQYLKIMAGGK 345
>gi|312379836|gb|EFR25996.1| hypothetical protein AND_08191 [Anopheles darlingi]
Length = 1167
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYL 67
GQ+ LV L T P +CHG G + QE++ AA A+E L
Sbjct: 1102 GQYLTLVVLTTEPPQMCHGSGASLQESQDEAARCALEML 1140
>gi|47218120|emb|CAG09992.1| unnamed protein product [Tetraodon nigroviridis]
Length = 302
Score = 35.0 bits (79), Expect = 6.5, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70
L G +Q L +L+T PV VCHG G + A AAH+A++Y+++M
Sbjct: 254 LTVNGLYQCLAELSTSPVVVCHGVGVSCSNAHNAAAHSALQYIKIM 299
>gi|432857632|ref|XP_004068726.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Oryzias
latipes]
Length = 345
Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G Q LV+L+T P+ VCHG A+ AAHNA++YL++M K
Sbjct: 299 SGLCQCLVELSTQPITVCHGFATNTDAARANAAHNALQYLKIMAGGK 345
>gi|391332367|ref|XP_003740607.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like [Metaseiulus occidentalis]
Length = 669
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 30 QFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+F +LV L + P CHG G+T +EA+ AAH+
Sbjct: 603 EFLSLVALTSNPPQQCHGSGRTVEEAQDNAAHS 635
>gi|317418804|emb|CBN80842.1| RISC-loading complex subunit tarbp2 [Dicentrarchus labrax]
Length = 345
Score = 34.3 bits (77), Expect = 9.8, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G Q LV+L+T P+ VCHG + A+ AAHNA++YL++M K
Sbjct: 299 SGLCQCLVELSTQPITVCHGFAPSIDAARANAAHNALQYLKIMAGGK 345
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.128 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 979,426,569
Number of Sequences: 23463169
Number of extensions: 27874349
Number of successful extensions: 57888
Number of sequences better than 100.0: 191
Number of HSP's better than 100.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57613
Number of HSP's gapped (non-prelim): 275
length of query: 74
length of database: 8,064,228,071
effective HSP length: 45
effective length of query: 29
effective length of database: 7,008,385,466
effective search space: 203243178514
effective search space used: 203243178514
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)