BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1572
(74 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2HJ92|PRKRA_BOVIN Interferon-inducible double stranded RNA-dependent protein kinase
activator A OS=Bos taurus GN=PRKRA PE=2 SV=1
Length = 313
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCSSAQSDAAHNALQYLKIIAERK 313
>sp|Q9WTX2|PRKRA_MOUSE Interferon-inducible double stranded RNA-dependent protein kinase
activator A OS=Mus musculus GN=Prkra PE=1 SV=1
Length = 313
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>sp|Q4V8C7|PRKRA_RAT Interferon-inducible double stranded RNA-dependent protein kinase
activator A OS=Rattus norvegicus GN=Prkra PE=1 SV=1
Length = 313
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIEELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>sp|O75569|PRKRA_HUMAN Interferon-inducible double stranded RNA-dependent protein kinase
activator A OS=Homo sapiens GN=PRKRA PE=1 SV=1
Length = 313
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
I L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 260 DIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>sp|Q91836|PRKAB_XENLA Interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog B OS=Xenopus laevis GN=prkra-b PE=1
SV=1
Length = 298
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L GQ+Q L +L+T P+ VCHG G + A AAHNA++YL++M K
Sbjct: 249 LSVNGQYQCLAELSTNPITVCHGTGISCGNAHNDAAHNALQYLKIMCIKK 298
>sp|Q7ZYA5|PRKAA_XENLA Interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog A OS=Xenopus laevis GN=prkra-a PE=2
SV=1
Length = 309
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L GQ+Q L +L+T P+ VCHG G + A AAHNA++YL++M K
Sbjct: 260 LSVNGQYQCLAELSTNPITVCHGTGISCGNAHNDAAHNALQYLKIMCIKK 309
>sp|P97473|TRBP2_MOUSE RISC-loading complex subunit TARBP2 OS=Mus musculus GN=Tarbp2 PE=1
SV=2
Length = 365
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 5 GLLDTRVCLISTNGSNSIAF---------LHSTGQFQALVQLATYPVAVCHGQGKTQQEA 55
G L + C + + S AF L +G Q LV+L+T P VC+G T++ A
Sbjct: 287 GALGSACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCYGSATTREAA 346
Query: 56 KTVAAHNAIEYLRLMTKSK 74
+ AAH A++YLR+M SK
Sbjct: 347 RGDAAHRALQYLRIMAGSK 365
>sp|B0V3F8|PRKRA_DANRE Interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog OS=Danio rerio GN=prkra PE=2 SV=2
Length = 282
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 21 SIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70
I L GQ+Q LV+L+T PV VCHG G T A AAHNA++Y++++
Sbjct: 229 DIDELTVNGQYQCLVELSTRPVTVCHGSGVTSSNAHNAAAHNALQYIKMV 278
>sp|P25159|STAU_DROME Maternal effect protein staufen OS=Drosophila melanogaster GN=stau
PE=1 SV=2
Length = 1026
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHN 62
+S LLD V N FL +V L+T+P +CHG GK+ +E++ AA N
Sbjct: 959 LSKLLDFEVNFSDYPKGNHNEFL-------TIVTLSTHPPQICHGVGKSSEESQNDAASN 1011
Query: 63 AIEYL 67
A++ L
Sbjct: 1012 ALKIL 1016
>sp|Q5BJ52|TRBP2_XENTR RISC-loading complex subunit tarbp2 OS=Xenopus tropicalis GN=tarbp2
PE=2 SV=2
Length = 351
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G +Q LV+L+T P VCHG T+ A+ AAHNA++YL++M K
Sbjct: 305 SGLYQCLVELSTQPTTVCHGSATTRDAARANAAHNALQYLKIMAGGK 351
>sp|Q15633|TRBP2_HUMAN RISC-loading complex subunit TARBP2 OS=Homo sapiens GN=TARBP2 PE=1
SV=3
Length = 366
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>sp|Q0IIG6|TRBP2_BOVIN RISC-loading complex subunit TARBP2 OS=Bos taurus GN=TARBP2 PE=2
SV=2
Length = 366
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIMAGSK 366
>sp|Q3SWU0|TRBP2_RAT RISC-loading complex subunit TARBP2 OS=Rattus norvegicus GN=Tarbp2
PE=2 SV=1
Length = 365
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 5 GLLDTRVCLISTNGSNSIAF---------LHSTGQFQALVQLATYPVAVCHGQGKTQQEA 55
G L + C I + S AF L +G Q LV+L+T P VC+G T++ A
Sbjct: 287 GSLGSACCSILSELSAEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCYGSATTREAA 346
Query: 56 KTVAAHNAIEYLRLMTKSK 74
+ AA A++YLR+M SK
Sbjct: 347 RGDAARRALQYLRIMAGSK 365
>sp|Q7SXR1|TRBP2_DANRE RISC-loading complex subunit tarbp2 OS=Danio rerio GN=tarbp2 PE=2
SV=1
Length = 346
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G +Q LV+L+T P+ VCHG + A+ AAHNA++YL++M K
Sbjct: 300 SGLYQCLVELSTQPITVCHGFASSLDAARASAAHNALQYLKIMAGGK 346
>sp|Q6GPZ1|TRBP2_XENLA RISC-loading complex subunit tarbp2 OS=Xenopus laevis GN=tarbp2
PE=2 SV=2
Length = 351
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G Q LV+L+T P VCHG T+ A+ AAHNA++YL++M K
Sbjct: 305 SGLCQCLVELSTQPTTVCHGSATTRDAARANAAHNALQYLKIMAGGK 351
>sp|Q4SS66|TRBP2_TETNG RISC-loading complex subunit tarbp2 OS=Tetraodon nigroviridis
GN=tarbp2 PE=3 SV=1
Length = 345
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G Q LV+L+T P+ VCHG + A+ AAHNA++YL++M K
Sbjct: 299 SGLCQCLVELSTQPITVCHGCASSTDAARASAAHNALQYLKIMAGGK 345
>sp|O60037|6PGD_CUNEL 6-phosphogluconate dehydrogenase, decarboxylating OS=Cunninghamella
elegans GN=6-PGD PE=2 SV=1
Length = 485
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 18 GSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEY--LRLMTK 72
G NS A+ H FQA+ A + C G+T HN IEY ++L+T+
Sbjct: 146 GGNSKAWEHIQPIFQAIAAKAPDGASCCEWVGETGAGHYVKMVHNGIEYGDMQLITE 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.128 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,278,732
Number of Sequences: 539616
Number of extensions: 661768
Number of successful extensions: 1700
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1682
Number of HSP's gapped (non-prelim): 20
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)