Query psy1572
Match_columns 74
No_of_seqs 56 out of 58
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 19:42:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1di2_A XLRBPA, double stranded 97.3 0.00069 2.4E-08 39.5 5.4 39 27-68 30-68 (69)
2 3adj_A F21M12.9 protein; HYL1, 97.0 0.0023 7.7E-08 38.2 5.7 39 28-68 35-73 (76)
3 2b7v_A Double-stranded RNA-spe 96.9 0.0016 5.6E-08 38.2 4.9 39 28-69 30-68 (71)
4 3adl_A RISC-loading complex su 96.9 0.0017 5.7E-08 40.4 4.6 40 28-70 46-85 (88)
5 3adg_A F21M12.9 protein; HYL1, 96.8 0.0027 9.3E-08 37.4 5.2 39 28-68 33-72 (73)
6 2dix_A Interferon-inducible do 96.8 0.0028 9.5E-08 38.7 5.3 41 28-71 38-78 (84)
7 3llh_A RISC-loading complex su 96.8 0.0023 7.9E-08 39.5 4.7 38 29-69 45-82 (90)
8 2b7t_A Double-stranded RNA-spe 96.7 0.0027 9.3E-08 37.5 4.7 39 27-68 32-70 (73)
9 2cpn_A TAR RNA-binding protein 96.7 0.0029 9.9E-08 39.3 5.0 39 28-69 47-85 (89)
10 1x48_A Interferon-induced, dou 96.7 0.0039 1.3E-07 38.6 5.5 40 30-71 37-76 (88)
11 1qu6_A Protein kinase PKR; dsR 96.7 0.0017 5.8E-08 43.7 3.9 37 30-68 135-171 (179)
12 1ekz_A DSRBDIII, maternal effe 96.6 0.00083 2.9E-08 39.9 1.8 38 28-68 37-74 (76)
13 3p1x_A Interleukin enhancer-bi 96.5 0.0057 1.9E-07 36.6 5.2 38 28-68 33-70 (75)
14 1uhz_A Staufen (RNA binding pr 96.3 0.0073 2.5E-07 37.4 5.0 38 28-68 37-74 (89)
15 1t4n_A Ribonuclease III; DSRBD 96.3 0.0038 1.3E-07 40.2 3.7 42 29-72 36-78 (94)
16 1x47_A DGCR8 protein; structur 96.2 0.0092 3.1E-07 37.6 4.9 38 29-68 46-83 (98)
17 2l2n_A Hyponastic leave 1; DSR 96.2 0.014 4.9E-07 37.0 5.7 40 28-69 47-87 (103)
18 1uil_A Double-stranded RNA-bin 95.9 0.021 7.3E-07 36.9 5.9 44 27-70 54-100 (113)
19 1whq_A RNA helicase A; double- 95.9 0.01 3.5E-07 37.6 4.1 43 28-71 35-77 (99)
20 2nug_A Ribonuclease III, RNAse 95.8 0.011 3.7E-07 40.5 4.4 38 28-68 181-218 (221)
21 1whn_A Hypothetical protein ri 95.8 0.031 1.1E-06 37.2 6.4 43 26-70 52-95 (128)
22 1x49_A Interferon-induced, dou 95.8 0.0096 3.3E-07 37.5 3.7 38 29-68 45-82 (97)
23 2l33_A Interleukin enhancer-bi 95.8 0.012 4E-07 37.1 4.0 38 28-68 43-80 (91)
24 3c4b_A Endoribonuclease dicer; 95.7 0.021 7.1E-07 39.9 5.3 41 26-68 222-262 (265)
25 1t4o_A Ribonuclease III; RNT1P 95.6 0.011 3.8E-07 39.6 3.7 41 30-72 39-80 (117)
26 2dmy_A Spermatid perinuclear R 95.6 0.017 5.7E-07 36.2 4.3 39 28-69 45-83 (97)
27 2khx_A Ribonuclease 3; drosha, 95.5 0.0088 3E-07 36.8 2.6 39 28-68 37-75 (85)
28 2l3j_A Double-stranded RNA-spe 95.3 0.023 8E-07 40.0 4.7 40 28-70 187-226 (236)
29 2ljh_A Double-stranded RNA-spe 95.3 0.02 6.8E-07 37.6 3.9 39 28-69 63-101 (114)
30 2yt4_A Protein DGCR8; DSRBD, R 95.3 0.025 8.7E-07 39.9 4.7 45 13-68 153-197 (232)
31 1o0w_A Ribonuclease III, RNAse 94.9 0.041 1.4E-06 38.6 5.0 38 29-68 211-248 (252)
32 1qu6_A Protein kinase PKR; dsR 94.9 0.029 1E-06 37.6 3.9 40 28-69 43-82 (179)
33 2yt4_A Protein DGCR8; DSRBD, R 94.4 0.062 2.1E-06 37.9 4.9 39 29-69 52-90 (232)
34 2l3j_A Double-stranded RNA-spe 93.5 0.093 3.2E-06 36.9 4.3 41 27-70 32-72 (236)
35 3rv0_A K. polysporus DCR1; RNA 92.5 0.022 7.7E-07 42.7 0.0 43 27-71 280-322 (341)
36 3n3w_A Ribonuclease III; nucle 92.4 0.024 8.2E-07 40.1 0.0 39 29-69 209-247 (248)
37 2a11_A Ribonuclease III, RNAse 92.0 0.028 9.6E-07 38.9 0.0 39 29-69 193-231 (242)
38 2f4l_A Acetamidase, putative; 84.3 3.2 0.00011 31.0 6.6 52 3-68 202-253 (297)
39 3mjj_A Predicted acetamidase/f 81.2 1.7 5.9E-05 32.6 4.1 28 42-69 227-254 (301)
40 2kou_A Dicer-like protein 4; A 81.1 4.6 0.00016 25.4 5.6 43 28-71 38-82 (102)
41 2ii1_A Acetamidase; 10172637, 79.1 2.3 7.8E-05 31.7 4.1 31 38-68 221-251 (301)
42 2db2_A KIAA0890 protein; DSRM 75.3 2.2 7.7E-05 29.1 2.9 32 39-71 60-91 (119)
43 1yjd_C TP44, T-cell-specific s 54.2 13 0.00043 24.3 3.3 27 25-51 88-116 (140)
44 2dsy_A Hypothetical protein TT 47.5 17 0.00058 21.8 2.9 26 45-70 39-64 (87)
45 2wkn_A Formamidase, gamma-lact 45.1 17 0.00058 28.3 3.2 26 43-68 306-340 (409)
46 3b9t_A Twin-arginine transloca 43.2 9.8 0.00033 30.3 1.6 20 49-68 419-438 (484)
47 3k6q_A Putative ligand binding 42.5 16 0.00053 25.2 2.4 23 46-68 74-96 (139)
48 2pkd_A SLAM family member 5; s 41.1 28 0.00097 20.6 3.2 35 7-41 61-97 (111)
49 4gmk_A Ribose-5-phosphate isom 40.5 5 0.00017 29.0 -0.3 20 49-68 1-20 (228)
50 1nkr_A P58-CL42 KIR; inhibitor 31.9 21 0.00072 21.8 1.5 20 22-41 167-186 (201)
51 1wit_A Twitchin 18TH IGSF modu 31.8 19 0.00066 19.3 1.3 10 27-36 69-78 (93)
52 3so5_A LIG-3, leucine-rich rep 31.1 21 0.0007 19.0 1.3 12 26-37 86-97 (112)
53 1t60_C Type IV collagen; basem 30.8 17 0.00057 26.7 1.1 18 32-49 51-68 (227)
54 1dqt_A CTLA4, cytotoxic T lymp 30.0 37 0.0013 19.4 2.3 26 25-50 84-110 (117)
55 4a5l_A Thioredoxin reductase; 29.9 40 0.0014 21.9 2.7 11 58-68 302-312 (314)
56 1g1c_A Immunoglobulin-like dom 29.9 22 0.00075 19.0 1.3 12 26-37 72-83 (99)
57 1t60_A Type IV collagen; basem 29.8 19 0.00065 26.5 1.3 19 32-50 163-181 (229)
58 3kwr_A Putative RNA-binding pr 29.7 23 0.00079 22.2 1.5 26 35-62 24-49 (97)
59 2yr3_A Myosin light chain kina 29.3 27 0.00091 18.8 1.6 10 27-36 75-84 (99)
60 2jju_A Signal regulatory prote 29.2 49 0.0017 19.2 2.8 25 26-50 84-110 (127)
61 1jw3_A Conserved hypothetical 28.2 39 0.0013 22.0 2.5 22 45-66 15-36 (140)
62 2edj_A Roundabout homolog 2; K 28.1 28 0.00095 18.8 1.5 12 26-37 72-83 (100)
63 3hn9_A Lamin-B1; structural ge 27.8 64 0.0022 20.7 3.4 32 10-41 4-36 (123)
64 1j5u_A Archease, possible chap 27.8 42 0.0014 22.1 2.6 22 45-66 25-46 (136)
65 2qv6_A MJ0145, GTP cyclohydrol 27.7 29 0.001 25.5 2.0 24 37-60 79-102 (268)
66 3puc_A Titin; I-SET IG-like do 27.7 25 0.00087 18.7 1.3 11 26-36 72-82 (99)
67 2z35_A T-cell receptor alpha-c 27.5 50 0.0017 18.6 2.6 26 25-50 81-106 (112)
68 3irg_A Titin; IG-like, titin, 27.5 26 0.00088 18.5 1.3 11 26-36 73-83 (100)
69 2kdg_A Myotilin; immonoglobuli 27.4 26 0.00088 18.8 1.3 12 26-37 72-83 (100)
70 2ckn_A Basic fibroblast growth 26.5 27 0.00092 19.0 1.2 12 26-37 70-81 (95)
71 1gl4_B Basement membrane-speci 26.2 28 0.00095 18.8 1.3 11 26-36 72-82 (98)
72 1eaj_A Coxsackie virus and ade 25.8 28 0.00097 18.8 1.3 11 27-37 100-110 (126)
73 1u2h_A APEG-1, aortic preferen 25.8 29 0.00098 18.5 1.3 11 26-36 72-82 (99)
74 3caf_A Fibroblast growth facto 25.8 29 0.00098 18.6 1.3 11 27-37 76-86 (100)
75 3bfo_A Mucosa-associated lymph 25.7 29 0.00099 18.6 1.3 12 26-37 60-71 (91)
76 3esu_F Antibody 14B7* light ch 25.5 40 0.0014 20.9 2.0 25 26-50 220-244 (250)
77 2oyp_A Hepatitis A virus cellu 25.3 23 0.0008 19.2 0.8 13 26-38 82-94 (109)
78 2eo9_A Roundabout homolog 1; b 25.2 34 0.0012 19.1 1.6 12 26-37 72-83 (118)
79 2dlt_A Myosin binding protein 25.2 35 0.0012 18.8 1.6 12 26-37 73-84 (106)
80 3udw_C Poliovirus receptor; PV 25.0 30 0.001 18.7 1.3 12 26-37 89-100 (118)
81 2cqv_A MLCK, myosin light chai 24.4 31 0.0011 19.2 1.3 11 26-36 73-83 (114)
82 2bk8_A Connectin, M1, titin he 24.2 32 0.0011 18.5 1.3 11 26-36 68-78 (97)
83 1wwc_A Protein (NT-3 growth fa 24.1 31 0.0011 19.4 1.3 11 26-36 75-85 (118)
84 3irg_B Obscurin-like protein 1 24.0 32 0.0011 18.6 1.3 12 26-37 79-90 (107)
85 3cx2_A Myosin-binding protein 23.7 32 0.0011 19.2 1.3 11 26-36 82-92 (108)
86 1rhf_A Tyrosine-protein kinase 23.6 36 0.0012 19.8 1.5 13 24-36 154-166 (182)
87 2dm3_A KIAA0992 protein, palla 23.6 31 0.0011 18.8 1.1 11 26-36 76-86 (110)
88 4hwu_A Fibroblast growth facto 23.5 33 0.0011 18.4 1.3 11 26-36 61-71 (95)
89 4gos_A V-SET domain-containing 23.3 32 0.0011 20.4 1.3 12 26-37 94-105 (125)
90 2vsd_A CHIR AB1; immune system 23.2 33 0.0011 19.6 1.3 12 27-38 67-78 (105)
91 1neu_A Myelin P0 protein; stru 22.8 35 0.0012 19.0 1.3 12 26-37 91-102 (124)
92 3vqt_A RF-3, peptide chain rel 22.6 33 0.0011 26.4 1.5 15 8-24 99-113 (548)
93 3qp3_A Titin; I-SET IG-like, s 22.3 36 0.0012 18.3 1.3 11 26-36 74-84 (103)
94 1ncn_A T lymphocyte activation 22.0 37 0.0013 18.8 1.3 14 26-39 79-92 (110)
95 3i84_A Cervical EMMPRIN; CD147 21.9 37 0.0013 21.3 1.4 16 26-43 68-83 (98)
96 2cr3_A Basic fibroblast growth 21.8 37 0.0013 18.6 1.3 11 27-37 65-75 (99)
97 2dm2_A Palladin; beta-sandwich 21.7 39 0.0013 18.6 1.3 11 26-36 76-86 (110)
98 1x44_A Myosin-binding protein 21.4 39 0.0013 18.5 1.3 11 26-36 74-84 (103)
99 3kvq_A Vascular endothelial gr 21.3 31 0.0011 18.7 0.8 11 26-36 74-84 (108)
100 2c5d_C AXL oncogene, tyrosine- 21.2 42 0.0014 19.8 1.5 16 22-37 162-177 (195)
101 3s35_X Vascular endothelial gr 21.2 39 0.0013 18.9 1.3 11 26-36 84-94 (122)
102 3vq2_C Lymphocyte antigen 96; 21.1 43 0.0015 23.0 1.6 14 27-40 111-124 (144)
103 3vni_A Xylose isomerase domain 21.0 92 0.0032 20.3 3.2 21 53-73 270-290 (294)
104 2e56_A Lymphocyte antigen 96; 20.9 42 0.0014 23.3 1.6 13 27-39 111-123 (144)
105 3noi_A Natural cytotoxicity tr 20.6 65 0.0022 18.4 2.2 23 26-50 91-113 (120)
106 3jt0_A Lamin-B1; structural ge 20.5 85 0.0029 20.9 3.0 32 10-41 17-49 (144)
107 2e7c_A Myosin-binding protein 20.5 41 0.0014 18.9 1.3 11 26-36 89-99 (118)
108 1pko_A Myelin oligodendrocyte 20.4 41 0.0014 19.5 1.3 12 27-38 96-107 (139)
109 4fn5_A EF-G 1, elongation fact 20.3 41 0.0014 26.5 1.6 15 8-24 84-98 (709)
110 3knb_A Titin; IG-like, titin, 20.2 42 0.0014 18.9 1.3 10 27-36 74-83 (100)
No 1
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=97.27 E-value=0.00069 Score=39.48 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=32.9
Q ss_pred cccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 27 STGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 27 ~~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
.+-.|.|-|.+.- . +..|.|.|-.+|..+||+.||+.|+
T Consensus 30 h~~~F~~~v~v~~--~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 30 HKREFTITCRVET--F-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp GGCEEEEEEEETT--E-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECC--E-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 3456878888765 4 8899999999999999999999885
No 2
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=96.97 E-value=0.0023 Score=38.18 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=31.8
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
+-.|.|-|.+.- ..+..|.|.|-.+|..+||++||+.|.
T Consensus 35 ~~~F~~~v~v~g--~~~~~G~G~sKK~Aeq~AA~~al~~L~ 73 (76)
T 3adj_A 35 VTQFTCTVEIGG--IKYTGAATRTKKDAEISAGRTALLAIQ 73 (76)
T ss_dssp CEEEEEEEEETT--EEEECCCBSSHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECC--EEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 344777777654 457899999999999999999999875
No 3
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=96.95 E-value=0.0016 Score=38.16 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=32.4
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRL 69 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLki 69 (74)
+-.|.|-|.+.-. +..|.|.|..+|+.+||+.||+.|.-
T Consensus 30 ~~~F~~~v~v~~~---~~~G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 30 AKSFVMSVVVDGQ---FFEGSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp TCCEEEEEECSSC---EEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEECCE---EEEEeeCCHHHHHHHHHHHHHHHHHh
Confidence 4568888888764 24899999999999999999998864
No 4
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=96.85 E-value=0.0017 Score=40.43 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=33.1
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHHh
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLkiM 70 (74)
+-.|.|-|.+.- . +.-|.|.|..+|..+||+.||+.|..+
T Consensus 46 ~~~F~~~v~v~g--~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 46 RKEFTMTCRVER--F-IEIGSGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp SCEEEEEEEETT--E-EEEEEESSHHHHHHHHHHHHHHHHHC-
T ss_pred CCeEEEEEEECC--E-EEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence 345777787765 4 889999999999999999999998754
No 5
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=96.84 E-value=0.0027 Score=37.37 Aligned_cols=39 Identities=28% Similarity=0.227 Sum_probs=31.7
Q ss_pred ccceeEEEEeccCCceEeecCC-CCHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQG-KTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG-~S~~eA~~~AA~NALqyLk 68 (74)
+-.|.|-|.+.- ..+..|.| .|-.+|..+||++||+.|.
T Consensus 33 ~~~F~~~v~v~g--~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 33 KSLFQSTVILDG--VRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp SCEEEEEEEETT--EEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEECC--EEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 345777777653 56789999 9999999999999998874
No 6
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=96.82 E-value=0.0028 Score=38.72 Aligned_cols=41 Identities=29% Similarity=0.427 Sum_probs=33.9
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHHhh
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMT 71 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLkiM~ 71 (74)
+-.|.|-|.+.- .+..|.|.|..+|+.+||++||+.|..+.
T Consensus 38 ~~~F~~~v~v~~---~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 78 (84)
T 2dix_A 38 VPTFTFRVTVGD---ITCTGEGTSKKLAKHRAAEAAINILKANA 78 (84)
T ss_dssp SCEEEEEEEETT---EEEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEEEECC---EEEEeeeCCHHHHHHHHHHHHHHHHhccc
Confidence 345777777753 67899999999999999999999987543
No 7
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=96.76 E-value=0.0023 Score=39.52 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=31.5
Q ss_pred cceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy1572 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRL 69 (74)
Q Consensus 29 G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLki 69 (74)
-.|.|-|.+.-. +..|.|.|..+|+.+||++||+.|+.
T Consensus 45 ~~F~~~v~v~g~---~~~G~G~SKK~Aeq~AA~~aL~~L~~ 82 (90)
T 3llh_A 45 PNFTFRVTVGDT---SCTGQGPSKKAAKHKAAEVALKHLKG 82 (90)
T ss_dssp CCEEEEEEETTE---EEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred CcEEEEEEECCE---EEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 467778888642 68999999999999999999999853
No 8
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=96.74 E-value=0.0027 Score=37.46 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=31.6
Q ss_pred cccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 27 STGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 27 ~~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
.+..|.|-|.+.-.. . .|.|.|-.+|..+||+.||+.|.
T Consensus 32 h~~~F~~~v~v~g~~--~-~G~G~SKK~Aeq~AA~~al~~L~ 70 (73)
T 2b7t_A 32 HAPLFVMSVEVNGQV--F-EGSGPTKKKAKLHAAEKALRSFV 70 (73)
T ss_dssp SSCEEEEEEESSSSE--E-EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECCEE--E-EeecCCHHHHHHHHHHHHHHHHh
Confidence 345677777776533 4 89999999999999999999875
No 9
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=96.73 E-value=0.0029 Score=39.29 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=32.6
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRL 69 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLki 69 (74)
.-.|.|-|.+.- . +..|.|.|..+|+.+||+.||+.|.-
T Consensus 47 ~~~F~~~v~i~g--~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 47 RKEFTMTCRVER--F-IEIGSGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp SCEEEEEEEETT--E-EEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCeEEEEEEECC--E-EEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 345777777765 4 88999999999999999999998863
No 10
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=96.72 E-value=0.0039 Score=38.56 Aligned_cols=40 Identities=30% Similarity=0.344 Sum_probs=33.0
Q ss_pred ceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHHhh
Q psy1572 30 QFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMT 71 (74)
Q Consensus 30 ~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLkiM~ 71 (74)
.|.|-|.+.- ..+..|.|.|..+|...||+.||+.|+.+.
T Consensus 37 ~F~~~v~v~g--~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 76 (88)
T 1x48_A 37 RFICKCKIGQ--TMYGTGSGVTKQEAKQLAAKEAYQKLLKSP 76 (88)
T ss_dssp CEEEEEEESS--CEEEEEEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred eEEEEEEECC--EEEEEeecCCHHHHHHHHHHHHHHHHHhcC
Confidence 3777777654 556789999999999999999999998654
No 11
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=96.66 E-value=0.0017 Score=43.72 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=28.7
Q ss_pred ceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 30 QFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 30 ~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
.|.|-|.+.-.. +|.|.|.|-.+|+.+||+.||+.|.
T Consensus 135 ~F~~~v~v~~~~--~~~g~g~sKK~Ak~~AA~~al~~L~ 171 (179)
T 1qu6_A 135 GFHYKCKMGQKE--YSIGTGSTKQEAKQLAAKLAYLQIL 171 (179)
T ss_dssp EEEEEEEEETTB--CCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCEE--EeeEEECCHHHHHHHHHHHHHHHHh
Confidence 355555544332 7999999999999999999998774
No 12
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=96.60 E-value=0.00083 Score=39.88 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=32.1
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
+-.|.|-|.+.- .+..|.|.|-.+|+..||+.||+.|+
T Consensus 37 ~~~F~~~v~i~~---~~~~G~G~sKK~Aeq~AA~~aL~~L~ 74 (76)
T 1ekz_A 37 MKNFITACIVGS---IVTEGEGNGKKVSKKRAAEKMLVELQ 74 (76)
T ss_dssp CSCSSEEEEETT---EEEEECCCSTTSSSHHHHHHHHHHHT
T ss_pred CCcEEEEEEECC---EEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 345777777754 67999999999999999999999875
No 13
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=96.54 E-value=0.0057 Score=36.62 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=30.5
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
+-.|.+-|.+.-. +..|.|.|..+|+.+||+.||+.|.
T Consensus 33 ~~~F~~~v~v~g~---~~~G~G~SKK~Aeq~AA~~al~~L~ 70 (75)
T 3p1x_A 33 DKRFVMEVEVDGQ---KFQGAGSNKKVAKAYAALAALEKLF 70 (75)
T ss_dssp SCEEEEEEEETTE---EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEECCE---EEEEEECCHHHHHHHHHHHHHHHHH
Confidence 3457777777643 3389999999999999999998874
No 14
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=96.33 E-value=0.0073 Score=37.44 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=31.9
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
+-.|.|-|.+.- . +..|.|.|..+|..+||++||+.|.
T Consensus 37 ~~~F~~~v~v~g--~-~~~G~G~SKK~Aeq~AA~~AL~~L~ 74 (89)
T 1uhz_A 37 RREFVMQVKVGN--E-VATGTGPNKKIAKKNAAEAMLLQLG 74 (89)
T ss_dssp TCEEEEEEEETT--E-EEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEECC--E-EEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 345777787764 4 7899999999999999999999885
No 15
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=96.32 E-value=0.0038 Score=40.19 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=32.7
Q ss_pred cceeEEEEeccCCc-eEeecCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy1572 29 GQFQALVQLATYPV-AVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72 (74)
Q Consensus 29 G~yqcLV~LST~P~-~VCHGsG~S~~eA~~~AA~NALqyLkiM~~ 72 (74)
..|..-|.+. -- .+-.|.|.|..+|...||+.||+.|+.|.|
T Consensus 36 k~F~v~v~i~--~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~k 78 (94)
T 1t4n_A 36 PNSIVECRVG--DGTVLGTGVGRNIKIAGIRAAENALRDKKMLDF 78 (94)
T ss_dssp CSEEEEEECS--SSCEEEEEEESSHHHHHHHHHHHHHHCHHHHHH
T ss_pred CeEEEEEEEC--CEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3454444444 35 567899999999999999999999998864
No 16
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=96.19 E-value=0.0092 Score=37.56 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=31.3
Q ss_pred cceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 29 G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
-.|.|-|.+.- ..+..|.|.|..+|..+||+.||+.|.
T Consensus 46 ~~F~~~V~v~g--~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 83 (98)
T 1x47_A 46 EPFGASVTIDG--VTYGSGTASSKKLAKNKAARATLEILI 83 (98)
T ss_dssp CCEEEEEEETT--EEEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEEEECC--EEEEEeeeCCHHHHHHHHHHHHHHHHH
Confidence 45777776654 556789999999999999999999875
No 17
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=96.15 E-value=0.014 Score=36.97 Aligned_cols=40 Identities=28% Similarity=0.204 Sum_probs=31.9
Q ss_pred ccceeEEEEeccCCceEeecCC-CCHHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQG-KTQQEAKTVAAHNAIEYLRL 69 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG-~S~~eA~~~AA~NALqyLki 69 (74)
+-.|.|-|.+.- ..+..|.| .|-.+|..+||+.||+.|.-
T Consensus 47 ~~~F~~~V~v~g--~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~ 87 (103)
T 2l2n_A 47 KSLFQSTVILDG--VRYNSLPGFFNRKAAEQSAAEVALRELAK 87 (103)
T ss_dssp SCEEEEEEEETT--EEEECCSCBSSHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEECC--EEEEEeecCCCHHHHHHHHHHHHHHHHhc
Confidence 345666666653 56789999 99999999999999999863
No 18
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=95.93 E-value=0.021 Score=36.85 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=34.4
Q ss_pred cccceeEEEEecc---CCceEeecCCCCHHHHHHHHHHHHHHHHHHh
Q psy1572 27 STGQFQALVQLAT---YPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70 (74)
Q Consensus 27 ~~G~yqcLV~LST---~P~~VCHGsG~S~~eA~~~AA~NALqyLkiM 70 (74)
..-.|.|-|.+.. .-..+..|.|.|-.+|...||+.||+.|.-.
T Consensus 54 H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 100 (113)
T 1uil_A 54 HNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL 100 (113)
T ss_dssp TTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 3456888888842 2245678999999999999999999998754
No 19
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=95.86 E-value=0.01 Score=37.56 Aligned_cols=43 Identities=19% Similarity=0.344 Sum_probs=33.3
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHHhh
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMT 71 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLkiM~ 71 (74)
+-.|.|-|.+.-. ..+..|.|.|-.+|+.+||+.||+.|.-+.
T Consensus 35 ~~~F~~~V~v~g~-~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 35 RQKFMCEVRVEGF-NYAGMGNSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp SEEEEEEEECTTC-SCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEECCe-EEEEEeccCCHHHHHHHHHHHHHHHHHhhC
Confidence 3457777776541 356789999999999999999999997543
No 20
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=95.85 E-value=0.011 Score=40.51 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=32.4
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
...|.|-|.+.- . +..|.|.|..+|+..||.+||+.|+
T Consensus 181 ~~~F~v~v~v~~--~-~~~G~G~skK~Ae~~AA~~AL~~L~ 218 (221)
T 2nug_A 181 KKKFIVEAKIKE--Y-RTLGEGKSKKEAEQRAAEELIKLLE 218 (221)
T ss_dssp GCEEEEEEEETT--E-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEECC--E-EEEEecCCHHHHHHHHHHHHHHHhh
Confidence 456888888765 3 8899999999999999999998875
No 21
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=95.82 E-value=0.031 Score=37.18 Aligned_cols=43 Identities=19% Similarity=0.067 Sum_probs=35.4
Q ss_pred ccccceeEEEEeccCCceEeecCC-CCHHHHHHHHHHHHHHHHHHh
Q psy1572 26 HSTGQFQALVQLATYPVAVCHGQG-KTQQEAKTVAAHNAIEYLRLM 70 (74)
Q Consensus 26 s~~G~yqcLV~LST~P~~VCHGsG-~S~~eA~~~AA~NALqyLkiM 70 (74)
...-.|.|-|.+.- ..+-.|.| .|-.+|..+||+.||+.|...
T Consensus 52 ~H~~~F~v~V~v~g--~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 52 TIDRMFCSVVTVAE--QKYQSTLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp SSSCCEEEEEEETT--EEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred cCCCcEEEEEEECC--EEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence 55677888887754 55678999 999999999999999998754
No 22
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=95.80 E-value=0.0096 Score=37.49 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=30.9
Q ss_pred cceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 29 G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
-.|.|-|.+.- ..+..|.|.|..+|...||+.||+.|.
T Consensus 45 ~~F~v~v~i~g--~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 82 (97)
T 1x49_A 45 RRFTFQVLIDE--KEFPEAKGRSKQEARNAAAKLAVDILD 82 (97)
T ss_dssp CEEEEEEEESS--CCCCCEEESSHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEECC--EEEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 45777777654 345689999999999999999999885
No 23
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=95.75 E-value=0.012 Score=37.14 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=30.7
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
+-.|.|-|.+.-.. .-|.|.|..+|..+||+.||+.|.
T Consensus 43 ~~~F~v~V~v~g~~---~~G~G~SKK~AEq~AA~~AL~~L~ 80 (91)
T 2l33_A 43 DKRFVMEVEVDGQK---FQGAGSNKKVAKAYAALAALEKLF 80 (91)
T ss_dssp CEEEEEEEEETTEE---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEEECCEE---EEeeeCCHHHHHHHHHHHHHHHHh
Confidence 34577777776533 389999999999999999998874
No 24
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=95.66 E-value=0.021 Score=39.87 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=33.7
Q ss_pred ccccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 26 HSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 26 s~~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
+..+.|.+-|.+.-. .+-.|.|.|..+|...||++||+.|+
T Consensus 222 ~~~~~f~v~v~v~~~--~~~~G~G~SkK~Aeq~AA~~AL~~l~ 262 (265)
T 3c4b_A 222 TYDGKVRVTVEVVGK--GKFKGVGRSYRIAKSAAARRALRSLK 262 (265)
T ss_dssp CTTSCEEEEEEETTT--EEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEEEecc--eEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 456778877777654 46789999999999999999999875
No 25
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=95.62 E-value=0.011 Score=39.63 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=32.2
Q ss_pred ceeEEEEeccCCc-eEeecCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy1572 30 QFQALVQLATYPV-AVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72 (74)
Q Consensus 30 ~yqcLV~LST~P~-~VCHGsG~S~~eA~~~AA~NALqyLkiM~~ 72 (74)
.|..-|.+ .-- .+-.|.|.|..+|...||.+||+.|+.|.|
T Consensus 39 ~F~v~V~i--~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~K 80 (117)
T 1t4o_A 39 NSIVECRV--GDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDF 80 (117)
T ss_dssp CEEEEEEC--TTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHH
T ss_pred eEEEEEEE--CCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 445 567899999999999999999999988764
No 26
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=95.62 E-value=0.017 Score=36.19 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=31.5
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRL 69 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLki 69 (74)
+-.|.+-|.+.-.. . .|.|.|-.+|..+||+.||+.|..
T Consensus 45 ~~~F~~~v~v~g~~--~-~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 45 APVFTMSVDVDGTT--Y-EASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp SCEEEEEEEETTEE--E-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEEEECCEE--E-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence 45577777776543 4 899999999999999999998853
No 27
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=95.47 E-value=0.0088 Score=36.80 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=30.6
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
+-.|.|-|.+.- ..+.-|.|.|-.+|..+||++||+.|.
T Consensus 37 ~~~F~v~V~v~g--~~~~~G~G~SKK~AEq~AA~~AL~~L~ 75 (85)
T 2khx_A 37 ARTYTVAVYFKG--ERIGCGKGPSIQQAEMGAAMDALEKYN 75 (85)
T ss_dssp CCCEEEEEEETT--EECCCEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEEEECC--EEEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 345767776654 455689999999999999999998764
No 28
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=95.32 E-value=0.023 Score=40.00 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=33.6
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHHh
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLkiM 70 (74)
+..|.|-|.+.-. ++.|.|.|-.+|...||+.||+.|..+
T Consensus 187 ~~~F~~~v~v~~~---~~~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 187 AKSFVMSVVVDGQ---FFEGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SCCEEEEEEETTE---EEEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEEEECCE---EEEeeeCCHHHHHHHHHHHHHHHHccc
Confidence 4568888888764 469999999999999999999988643
No 29
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=95.28 E-value=0.02 Score=37.61 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=31.0
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRL 69 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLki 69 (74)
+-.|.|-|.+.- ... .|.|.|..+|+.+||+.||+.|..
T Consensus 63 ~k~F~v~V~v~g--~~~-~G~G~SKK~AEq~AA~~AL~~L~~ 101 (114)
T 2ljh_A 63 APLFTISVEVDG--QKY-LGQGRSKKVARIEAAATALRSFIQ 101 (114)
T ss_dssp SCEEEEEEEETT--EEE-EEEESSHHHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEEEECC--EEE-EeeeCCHHHHHHHHHHHHHHHHHc
Confidence 455777777764 334 899999999999999999998753
No 30
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=95.27 E-value=0.025 Score=39.91 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=30.1
Q ss_pred eeeCCCCCceeeeccccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 13 LISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 13 ~~~~~~~n~ieels~~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
+.+..|..|... |.|-|. -.++.|.|.|..+|...||..||+.|.
T Consensus 153 ~~~~~Gp~h~~~------F~~~v~-----~~~~~G~G~sKK~Aeq~AA~~aL~~L~ 197 (232)
T 2yt4_A 153 FEVVPGKNQKSE------YVMACG-----KHTVRGWCKNKRVGKQLASQKILQLLH 197 (232)
T ss_dssp CC------CCEE------EEEEET-----TEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred EeecCCCCCCCE------EEEEEE-----EEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 444555555443 333332 668999999999999999999999885
No 31
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=94.94 E-value=0.041 Score=38.61 Aligned_cols=38 Identities=32% Similarity=0.381 Sum_probs=31.6
Q ss_pred cceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 29 G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
..|.|-|.+.- ..+..|.|.|..+|+..||..||+.|+
T Consensus 211 ~~F~v~v~v~g--~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 248 (252)
T 1o0w_A 211 RIFVVEVRVNG--KTIATGKGRTKKEAEKEAARIAYEKLL 248 (252)
T ss_dssp CEEEEEEEETT--EEEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEEECC--EEEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 45777777754 456899999999999999999998875
No 32
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=94.86 E-value=0.029 Score=37.63 Aligned_cols=40 Identities=30% Similarity=0.391 Sum_probs=32.1
Q ss_pred ccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy1572 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRL 69 (74)
Q Consensus 28 ~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLki 69 (74)
.-.|.|-|.+.- ..+..|.|.|..+|+.+||+.||+.|..
T Consensus 43 ~~~F~~~v~v~g--~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 82 (179)
T 1qu6_A 43 DRRFTFQVIIDG--REFPEGEGRSKKEAKNAAAKLAVEILNK 82 (179)
T ss_dssp BCCEEEEEESSS--SCCCEEECCSSHHHHHHHHHHHHHHHHS
T ss_pred CCeEEEEEEECC--EEEEecCCCCHHHHHHHHHHHHHHHHhc
Confidence 345777777754 3356899999999999999999999863
No 33
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=94.45 E-value=0.062 Score=37.92 Aligned_cols=39 Identities=28% Similarity=0.299 Sum_probs=31.9
Q ss_pred cceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy1572 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRL 69 (74)
Q Consensus 29 G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLki 69 (74)
..|.|-|.+.- ..+..|.|.|..+|+.+||+.||+.|.-
T Consensus 52 ~~F~~~v~v~g--~~~~~G~G~SKK~Aeq~AA~~aL~~L~~ 90 (232)
T 2yt4_A 52 EPFGASVTIDG--VTYGSGTASSKKLAKNKAARATLEILIP 90 (232)
T ss_dssp SCEEEEEEETT--EEEEEEEESSHHHHHHHHHHHHHHHHST
T ss_pred CcEEEEEEECC--EEEeecCCCCHHHHHHHHHHHHHHHHHh
Confidence 45777777654 4567899999999999999999998854
No 34
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=93.47 E-value=0.093 Score=36.91 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=32.6
Q ss_pred cccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHHh
Q psy1572 27 STGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLM 70 (74)
Q Consensus 27 ~~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLkiM 70 (74)
....|.+-|.+.-.. ..|.|.|..+|+.+||+.||+.|...
T Consensus 32 H~~~F~~~v~v~g~~---~~G~G~SKK~Aeq~AA~~al~~l~~~ 72 (236)
T 2l3j_A 32 HAPLFVMSVEVNGQV---FEGSGPTKKKAKLHAAEKALRSFVQF 72 (236)
T ss_dssp TSCEEEEEEEETTEE---EEEEESHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEEEECCEE---EEEecCChHHHHHHHHHHHHHHHHhc
Confidence 345677777775532 48999999999999999999998753
No 35
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=92.53 E-value=0.022 Score=42.71 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=0.0
Q ss_pred cccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHHhh
Q psy1572 27 STGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMT 71 (74)
Q Consensus 27 ~~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLkiM~ 71 (74)
.+|.|.+-|.+.- ..+..|.|.|..+|...||+.||+-|+.+.
T Consensus 280 ~~GpF~v~v~i~~--~~~g~G~G~SKK~AEq~AA~~AL~~L~~~~ 322 (341)
T 3rv0_A 280 EMPPFRVEVKIGD--ILLDEAEGNSIREAEHRAAMKVLENDELLR 322 (341)
T ss_dssp ---------------------------------------------
T ss_pred ccCCEEEEEEECC--EEEEEEEeCCHHHHHHHHHHHHHHHhhhhh
Confidence 3566766555543 457899999999999999999999998764
No 36
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=92.39 E-value=0.024 Score=40.13 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=0.0
Q ss_pred cceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy1572 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRL 69 (74)
Q Consensus 29 G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLki 69 (74)
..|.|-|.+.- ..+..|.|.|..+|+..||.+||+.|+-
T Consensus 209 ~~F~v~v~v~g--~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 209 KQFEIALMLDG--KELARAIAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp -----------------------------------------
T ss_pred ceEEEEEEECC--EEEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence 45777666654 3567899999999999999999998863
No 37
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=92.03 E-value=0.028 Score=38.93 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=0.0
Q ss_pred cceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy1572 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRL 69 (74)
Q Consensus 29 G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLki 69 (74)
..|.|-|.+.- ..+..|.|.|..+|+..||.+||+.|+-
T Consensus 193 ~~F~v~v~v~g--~~~~~G~G~skk~Ae~~AA~~AL~~L~~ 231 (242)
T 2a11_A 193 KEFTAVVVVMD--SEYGSGVGRSKKEAEQKAAAAAWKALEV 231 (242)
T ss_dssp -----------------------------------------
T ss_pred CeEEEEEEECC--EEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 45777666654 3567899999999999999999998863
No 38
>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1
Probab=84.34 E-value=3.2 Score=31.02 Aligned_cols=52 Identities=8% Similarity=0.036 Sum_probs=38.0
Q ss_pred cccceeeeEEeeeCCCCCceeeeccccceeEEEEeccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 3 ISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 3 ~s~l~~~~v~~~~~~~~n~ieels~~G~yqcLV~LST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
.+.-..++|.++.- .++.- .+-|...-++.|++.+.++|-.+|.++|++||+
T Consensus 202 ~~~~vtl~v~viK~----~l~~P----------~~et~~~~~~~G~~~dl~~A~r~A~~~mi~~L~ 253 (297)
T 2f4l_A 202 VPAKVVVEIDVSKE----EIKWP----------VVETNDAYYIIVSLPDIEEALKEVTRETVWFIQ 253 (297)
T ss_dssp CCEEEEEEEEEECC----CCSSC----------EEECSSEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEEEEEeCC----CCCCC----------EEECCCcEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 34556677777653 12211 234556779999999999999999999999996
No 39
>3mjj_A Predicted acetamidase/formamidase; beta/alpha structure, hydrolase; 1.99A {Thermoanaerobacter tengcongensis} PDB: 3tkk_A
Probab=81.24 E-value=1.7 Score=32.61 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.9
Q ss_pred ceEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy1572 42 VAVCHGQGKTQQEAKTVAAHNAIEYLRL 69 (74)
Q Consensus 42 ~~VCHGsG~S~~eA~~~AA~NALqyLki 69 (74)
--++.|+|.+.++|-.+|.++|++||+.
T Consensus 227 ~~~~~g~~~~ld~A~r~A~~~mi~~L~~ 254 (301)
T 3mjj_A 227 VTATIASAESLDKAVEIAVHDMAELFKK 254 (301)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 3467799999999999999999999974
No 40
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=81.08 E-value=4.6 Score=25.40 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=33.7
Q ss_pred ccceeEEEEecc-CCceEeecCC-CCHHHHHHHHHHHHHHHHHHhh
Q psy1572 28 TGQFQALVQLAT-YPVAVCHGQG-KTQQEAKTVAAHNAIEYLRLMT 71 (74)
Q Consensus 28 ~G~yqcLV~LST-~P~~VCHGsG-~S~~eA~~~AA~NALqyLkiM~ 71 (74)
.|.| |-|.|-. .|+....|.- .|...|+..||..|.+.|-.++
T Consensus 38 ~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~G 82 (102)
T 2kou_A 38 GGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLG 82 (102)
T ss_dssp GCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHCC
Confidence 4566 9999976 5655454432 7889999999999999998776
No 41
>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans}
Probab=79.09 E-value=2.3 Score=31.75 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=27.2
Q ss_pred ccCCceEeecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 38 ATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 38 ST~P~~VCHGsG~S~~eA~~~AA~NALqyLk 68 (74)
-|.-.-++.|++.+.++|-.+|.++|++||+
T Consensus 221 et~~~~~~~G~~~dl~~A~r~A~~~mi~~L~ 251 (301)
T 2ii1_A 221 KTDTHFMTIASAETLDAAAVQATKNMATFLA 251 (301)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ECCCcEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 3445668999999999999999999999996
No 42
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.31 E-value=2.2 Score=29.10 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=26.2
Q ss_pred cCCceEeecCCCCHHHHHHHHHHHHHHHHHHhh
Q psy1572 39 TYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMT 71 (74)
Q Consensus 39 T~P~~VCHGsG~S~~eA~~~AA~NALqyLkiM~ 71 (74)
..|..+ =|.|....||.+.||.-|++.||-.+
T Consensus 60 P~~mef-~a~G~rK~eAE~kAAA~AC~kLK~Lg 91 (119)
T 2db2_A 60 PKSVEV-EGYGSKKIDAERQAAAAACQLFKGWG 91 (119)
T ss_dssp SSCEEE-EEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcEEE-EeeccchHHHHHHHHHHHHHHHHHcC
Confidence 344444 58899999999999999999999765
No 43
>1yjd_C TP44, T-cell-specific surface glycoprotein CD28; IGSF, CD28 homodimer, immune system-signaling protein comple; HET: NAG; 2.70A {Homo sapiens} SCOP: b.1.1.1
Probab=54.23 E-value=13 Score=24.33 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=20.4
Q ss_pred eccccceeEEEEeccCCceE-e-ecCCCC
Q psy1572 25 LHSTGQFQALVQLATYPVAV-C-HGQGKT 51 (74)
Q Consensus 25 ls~~G~yqcLV~LST~P~~V-C-HGsG~S 51 (74)
..-+|.|.|-+++.--||-+ . +|.|..
T Consensus 88 ~~Dta~YfCa~~~~~ppp~~~~~~g~GT~ 116 (140)
T 1yjd_C 88 VNQTDIYFCKIEVMYPPPYLDNEKSNGTI 116 (140)
T ss_dssp GGGCEEEEEEEEEEESSSCEEBCCCCCEE
T ss_pred hhhCEEEEEEEEecCCCceeeeecCCCEE
Confidence 34478999999997767666 5 888863
No 44
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=47.55 E-value=17 Score=21.83 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=18.9
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHHHh
Q psy1572 45 CHGQGKTQQEAKTVAAHNAIEYLRLM 70 (74)
Q Consensus 45 CHGsG~S~~eA~~~AA~NALqyLkiM 70 (74)
|+..|.|.+||..+|.--.-.+|..+
T Consensus 39 c~t~G~T~eEA~~~a~eAl~~~le~~ 64 (87)
T 2dsy_A 39 VWATGKSLKECEANLQAALEDWLLFL 64 (87)
T ss_dssp CEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eeEeeCCHHHHHHHHHHHHHHHHHHH
Confidence 88889999999988755444455433
No 45
>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A {Delftia acidovorans}
Probab=45.07 E-value=17 Score=28.26 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=20.7
Q ss_pred eEeecCCCCH---------HHHHHHHHHHHHHHHH
Q psy1572 43 AVCHGQGKTQ---------QEAKTVAAHNAIEYLR 68 (74)
Q Consensus 43 ~VCHGsG~S~---------~eA~~~AA~NALqyLk 68 (74)
.+.+|..... .+|-++|.+||++||+
T Consensus 306 li~~G~~~d~~g~~~~ld~~~A~r~A~~~~i~~L~ 340 (409)
T 2wkn_A 306 LIFEGISVDEKGKQHYLDVTVAYRQACLNAIEYLK 340 (409)
T ss_dssp EEEEEESBCTTCCBCSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeccccccccccccHHHHHHHHHHHHHHHHH
Confidence 3556666555 6899999999999997
No 46
>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1, predicted acetamidase/formamidase, acetamidase/formamidase family; 1.58A {Methylobacillus flagellatus KT}
Probab=43.23 E-value=9.8 Score=30.33 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy1572 49 GKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 49 G~S~~eA~~~AA~NALqyLk 68 (74)
+.++++|-.+|.++|++||+
T Consensus 419 ~~~Ld~A~r~A~~~mi~~L~ 438 (484)
T 3b9t_A 419 KSSLDLALKDAFRKMRHFLM 438 (484)
T ss_dssp HCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999995
No 47
>3k6q_A Putative ligand binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Probab=42.47 E-value=16 Score=25.20 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.8
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHH
Q psy1572 46 HGQGKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 46 HGsG~S~~eA~~~AA~NALqyLk 68 (74)
++.|+|.++|-++.+.+.++|=.
T Consensus 74 ~~~g~T~eeA~~~li~~l~eYAe 96 (139)
T 3k6q_A 74 VVSGESEQEVIQKLAEDLLEYAQ 96 (139)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999854
No 48
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}
Probab=41.13 E-value=28 Score=20.65 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=24.8
Q ss_pred eeeeEEeeeCCCCCceeeec--cccceeEEEEeccCC
Q psy1572 7 LDTRVCLISTNGSNSIAFLH--STGQFQALVQLATYP 41 (74)
Q Consensus 7 ~~~~v~~~~~~~~n~ieels--~~G~yqcLV~LST~P 41 (74)
+.-|+.|.+-+++=.|..+. -+|.|.|-|..+..+
T Consensus 61 f~~Rl~l~~~~~SL~I~nl~~~DsG~Y~c~i~~~~~~ 97 (111)
T 2pkd_A 61 YYERIHALGPNYNLVISDLRMEDAGDYKADINTQADP 97 (111)
T ss_dssp GTTCEEECTTTCCEEECSCCGGGCEEEEEEEEESSTT
T ss_pred cCCcEEEeCCCEEEEECCCCHHHCEEEEEEEEeCCCC
Confidence 34567776666666676554 579999999887764
No 49
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=40.55 E-value=5 Score=29.05 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy1572 49 GKTQQEAKTVAAHNAIEYLR 68 (74)
Q Consensus 49 G~S~~eA~~~AA~NALqyLk 68 (74)
|++.+|+...||+.|++|.+
T Consensus 1 g~~qd~~K~~aa~~A~~~V~ 20 (228)
T 4gmk_A 1 GPNQDELKQLVGTKAVEWIK 20 (228)
T ss_dssp -CHHHHHHHHHHHHHGGGCC
T ss_pred CcCHHHHHHHHHHHHHHhCC
Confidence 78899999999999999865
No 50
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=31.93 E-value=21 Score=21.79 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=14.7
Q ss_pred eeeeccccceeEEEEeccCC
Q psy1572 22 IAFLHSTGQFQALVQLATYP 41 (74)
Q Consensus 22 ieels~~G~yqcLV~LST~P 41 (74)
|..++-.|.|.|.++....|
T Consensus 167 i~~v~d~G~Y~C~a~~~~~~ 186 (201)
T 1nkr_A 167 LGPATHGGTYRCFGSFHDSP 186 (201)
T ss_dssp EEECCSCEEEEEEEEETTEE
T ss_pred eCCcCCCeeEEEEEEcCCCC
Confidence 44445779999999876555
No 51
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=31.79 E-value=19 Score=19.34 Aligned_cols=10 Identities=20% Similarity=0.584 Sum_probs=8.5
Q ss_pred cccceeEEEE
Q psy1572 27 STGQFQALVQ 36 (74)
Q Consensus 27 ~~G~yqcLV~ 36 (74)
-+|.|.|.++
T Consensus 69 D~G~Y~C~a~ 78 (93)
T 1wit_A 69 DSGNYKLKVK 78 (93)
T ss_dssp GCEEEEEEEE
T ss_pred cCEEEEEEEE
Confidence 4799999986
No 52
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=31.05 E-value=21 Score=19.01 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=9.2
Q ss_pred ccccceeEEEEe
Q psy1572 26 HSTGQFQALVQL 37 (74)
Q Consensus 26 s~~G~yqcLV~L 37 (74)
.-.|.|.|.++=
T Consensus 86 ~D~G~Y~C~a~n 97 (112)
T 3so5_A 86 TSEGXYQCVISN 97 (112)
T ss_dssp GGCEEEEEEEEE
T ss_pred ccCCeEEEEEEe
Confidence 346999999863
No 53
>1t60_C Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} PDB: 1m3d_C 1t61_C 1li1_C
Probab=30.85 E-value=17 Score=26.74 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=16.3
Q ss_pred eEEEEeccCCceEeecCC
Q psy1572 32 QALVQLATYPVAVCHGQG 49 (74)
Q Consensus 32 qcLV~LST~P~~VCHGsG 49 (74)
-||-..+|+|...|+|.|
T Consensus 51 SCL~~Fst~Pf~~C~~~~ 68 (227)
T 1t60_C 51 SCLARFSTMPFLYCNPGD 68 (227)
T ss_dssp GEESSCCSCCEEEEETTT
T ss_pred chhhhhcCCCceEeCCCC
Confidence 499999999999999965
No 54
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin variable domain-like beta-sandwich, homodimer, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1
Probab=30.00 E-value=37 Score=19.37 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=17.4
Q ss_pred eccccceeEEEEeccCCc-eEeecCCC
Q psy1572 25 LHSTGQFQALVQLATYPV-AVCHGQGK 50 (74)
Q Consensus 25 ls~~G~yqcLV~LST~P~-~VCHGsG~ 50 (74)
.+=+|.|.|-+.-...|+ ..-.|.|.
T Consensus 84 ~~Dsg~Y~C~~~~~~~~~~~~~~g~gt 110 (117)
T 1dqt_A 84 AVDTGLYLCKVELMYPPPYFVGMGNGT 110 (117)
T ss_dssp GGGCEEEEEEEEEEESSSCEEEECSCE
T ss_pred cccCEEEEEEEeecCCCCeEEeeCCCC
Confidence 345799999998653333 33478775
No 55
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=29.94 E-value=40 Score=21.87 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=9.9
Q ss_pred HHHHHHHHHHH
Q psy1572 58 VAAHNAIEYLR 68 (74)
Q Consensus 58 ~AA~NALqyLk 68 (74)
.||.+|-+||+
T Consensus 302 ~AA~~~~~yL~ 312 (314)
T 4a5l_A 302 MAALSCEKWLQ 312 (314)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 68999999996
No 56
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=29.94 E-value=22 Score=19.03 Aligned_cols=12 Identities=0% Similarity=-0.100 Sum_probs=9.2
Q ss_pred ccccceeEEEEe
Q psy1572 26 HSTGQFQALVQL 37 (74)
Q Consensus 26 s~~G~yqcLV~L 37 (74)
.-.|.|.|.++=
T Consensus 72 ~D~G~Y~C~a~N 83 (99)
T 1g1c_A 72 EDSASIMVKAIN 83 (99)
T ss_dssp GGCEEEEEEEEE
T ss_pred CCCEEEEEEEEE
Confidence 347999999863
No 57
>1t60_A Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} SCOP: d.169.1.6 d.169.1.6 PDB: 1m3d_A 1t61_A 1li1_A
Probab=29.78 E-value=19 Score=26.50 Aligned_cols=19 Identities=32% Similarity=0.746 Sum_probs=16.8
Q ss_pred eEEEEeccCCceEeecCCC
Q psy1572 32 QALVQLATYPVAVCHGQGK 50 (74)
Q Consensus 32 qcLV~LST~P~~VCHGsG~ 50 (74)
-||-..+|.|...|||.|.
T Consensus 163 SCL~~Frt~PFi~C~~~~~ 181 (229)
T 1t60_A 163 SCLEEFRSAPFIECHGRGT 181 (229)
T ss_dssp GEESSCCSSCEEEEETTSC
T ss_pred ccccccccCCeEEeCCCCc
Confidence 5999999999999999653
No 58
>3kwr_A Putative RNA-binding protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS binding protein; HET: GOL; 1.45A {Lactobacillus plantarum}
Probab=29.75 E-value=23 Score=22.25 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=17.7
Q ss_pred EEeccCCceEeecCCCCHHHHHHHHHHH
Q psy1572 35 VQLATYPVAVCHGQGKTQQEAKTVAAHN 62 (74)
Q Consensus 35 V~LST~P~~VCHGsG~S~~eA~~~AA~N 62 (74)
|+.--.| =|+-.|.|.+||..+|.-.
T Consensus 24 v~fPDlP--Gc~T~GdT~eEAl~nA~EA 49 (97)
T 3kwr_A 24 VRFPDVP--AAQTFGASVQVAADNAANA 49 (97)
T ss_dssp EECTTCG--GGCEEESSHHHHHHHHHHH
T ss_pred EEeCCCC--CcEEecCCHHHHHHHHHHH
Confidence 4444344 3888999999998776543
No 59
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.28 E-value=27 Score=18.82 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=8.5
Q ss_pred cccceeEEEE
Q psy1572 27 STGQFQALVQ 36 (74)
Q Consensus 27 ~~G~yqcLV~ 36 (74)
-.|.|.|.++
T Consensus 75 D~G~Y~C~a~ 84 (99)
T 2yr3_A 75 DHGTYTCLAE 84 (99)
T ss_dssp CCBCEEEEEE
T ss_pred hCEEEEEEEE
Confidence 4799999986
No 60
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Probab=29.16 E-value=49 Score=19.23 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=17.8
Q ss_pred ccccceeEEEEeccCC--ceEeecCCC
Q psy1572 26 HSTGQFQALVQLATYP--VAVCHGQGK 50 (74)
Q Consensus 26 s~~G~yqcLV~LST~P--~~VCHGsG~ 50 (74)
+=+|.|.|-+.-...| ..+=.|.|.
T Consensus 84 ~DsG~Y~C~~~~~~~~~~~~~~fg~GT 110 (127)
T 2jju_A 84 ADAGTYYCVKFRKGSPDDVEFKSGAGT 110 (127)
T ss_dssp GGCEEEEEEEEECCSSSCEEEEECCCE
T ss_pred HHCEEEEEEEEcCCCCccceEEeCCCe
Confidence 3469999999877655 355577775
No 61
>1jw3_A Conserved hypothetical protein MTH1598; structural genomics, protein structure initiative, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.208.1.1
Probab=28.23 E-value=39 Score=22.03 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=19.0
Q ss_pred eecCCCCHHHHHHHHHHHHHHH
Q psy1572 45 CHGQGKTQQEAKTVAAHNAIEY 66 (74)
Q Consensus 45 CHGsG~S~~eA~~~AA~NALqy 66 (74)
=|+.|.|++||=.+||..-..|
T Consensus 15 i~a~G~tlee~F~~aa~am~~~ 36 (140)
T 1jw3_A 15 FWAYGHDLEEVFENAALAMFEV 36 (140)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHHH
Confidence 4889999999999999877655
No 62
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.11 E-value=28 Score=18.80 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=9.3
Q ss_pred ccccceeEEEEe
Q psy1572 26 HSTGQFQALVQL 37 (74)
Q Consensus 26 s~~G~yqcLV~L 37 (74)
.-.|.|.|.++=
T Consensus 72 ~d~G~Y~C~a~n 83 (100)
T 2edj_A 72 SDTGTYTCVATS 83 (100)
T ss_dssp TTCCEEEEEEEC
T ss_pred ccCEEEEEEEEc
Confidence 357999999863
No 63
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=27.77 E-value=64 Score=20.71 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=22.9
Q ss_pred eEEeeeCCCCC-ceeeeccccceeEEEEeccCC
Q psy1572 10 RVCLISTNGSN-SIAFLHSTGQFQALVQLATYP 41 (74)
Q Consensus 10 ~v~~~~~~~~n-~ieels~~G~yqcLV~LST~P 41 (74)
++.+..+.+|| .|+|...+|+|-.|.--|...
T Consensus 4 ~~s~~~sakG~V~I~evd~~G~fV~L~N~s~~~ 36 (123)
T 3hn9_A 4 SISHSASATGNVCIEEIDVDGKFIRLKNTSEQD 36 (123)
T ss_dssp CEEEEEEESSSEEEEEECTTSSEEEEEECSSSC
T ss_pred eEEEEeecCCCEEEEEEcCCCCEEEEEECCCCc
Confidence 44555555665 699999999999887665443
No 64
>1j5u_A Archease, possible chaperone; structural genomics, joint center for structural G JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: d.208.1.1
Probab=27.75 E-value=42 Score=22.12 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=19.2
Q ss_pred eecCCCCHHHHHHHHHHHHHHH
Q psy1572 45 CHGQGKTQQEAKTVAAHNAIEY 66 (74)
Q Consensus 45 CHGsG~S~~eA~~~AA~NALqy 66 (74)
=|+.|.|++||=++||..-..|
T Consensus 25 i~a~G~tleEaFe~aa~Am~~~ 46 (136)
T 1j5u_A 25 YEISGNSYEELLEEARNILLEE 46 (136)
T ss_dssp EEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHHh
Confidence 3789999999999999887766
No 65
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=27.71 E-value=29 Score=25.46 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=19.9
Q ss_pred eccCCceEeecCCCCHHHHHHHHH
Q psy1572 37 LATYPVAVCHGQGKTQQEAKTVAA 60 (74)
Q Consensus 37 LST~P~~VCHGsG~S~~eA~~~AA 60 (74)
.+.-|+.+|=|.|.|+-+|+..|-
T Consensus 79 ~~Pv~vs~~~g~~~tP~~A~~~A~ 102 (268)
T 2qv6_A 79 RYPFTVSMVIASAETPYEAQKLAT 102 (268)
T ss_dssp HSSSCEEEEEEEESSHHHHHHHHH
T ss_pred cCCceEEEEEEecCCHHHHHHHHH
Confidence 455688999999999999998754
No 66
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=27.69 E-value=25 Score=18.68 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=9.1
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
.-+|.|.|.++
T Consensus 72 ~d~G~Y~C~a~ 82 (99)
T 3puc_A 72 SDSGLYTCTVK 82 (99)
T ss_dssp GGCEEEEEEEE
T ss_pred ccCEEEEEEEE
Confidence 45799999986
No 67
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Probab=27.53 E-value=50 Score=18.64 Aligned_cols=26 Identities=8% Similarity=0.080 Sum_probs=16.1
Q ss_pred eccccceeEEEEeccCCceEeecCCC
Q psy1572 25 LHSTGQFQALVQLATYPVAVCHGQGK 50 (74)
Q Consensus 25 ls~~G~yqcLV~LST~P~~VCHGsG~ 50 (74)
.+=+|.|.|-+........+=.|.|.
T Consensus 81 ~~DsG~Y~C~~~~~~~~~~~~fg~GT 106 (112)
T 2z35_A 81 ESDSAVYYCALSENYGNEKITFGAGT 106 (112)
T ss_dssp STTCSEEEEEEECTTTTCCEEECCCE
T ss_pred hhhCEEEEEEEEcCCCCceeEECCCE
Confidence 34689999999853222234467765
No 68
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=27.49 E-value=26 Score=18.52 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=9.0
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
.-.|.|.|.++
T Consensus 73 ~D~G~Y~C~a~ 83 (100)
T 3irg_A 73 QDGGLYTLSLG 83 (100)
T ss_dssp GGCEEEEEEEE
T ss_pred ccCEEEEEEEE
Confidence 45799999886
No 69
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=27.36 E-value=26 Score=18.76 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=9.3
Q ss_pred ccccceeEEEEe
Q psy1572 26 HSTGQFQALVQL 37 (74)
Q Consensus 26 s~~G~yqcLV~L 37 (74)
.-.|.|.|.++=
T Consensus 72 ~D~G~Y~C~a~n 83 (100)
T 2kdg_A 72 SDAGAYACVAKN 83 (100)
T ss_dssp GGCEEEEEEEEE
T ss_pred ccCEEEEEEEEc
Confidence 457999999863
No 70
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=26.52 E-value=27 Score=18.97 Aligned_cols=12 Identities=8% Similarity=0.321 Sum_probs=9.3
Q ss_pred ccccceeEEEEe
Q psy1572 26 HSTGQFQALVQL 37 (74)
Q Consensus 26 s~~G~yqcLV~L 37 (74)
.-+|.|.|.++=
T Consensus 70 ~D~G~Y~C~a~n 81 (95)
T 2ckn_A 70 ADSGLYACVTSS 81 (95)
T ss_dssp GGSEEEEEEEEE
T ss_pred HHCEEEEEEecc
Confidence 347999999864
No 71
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=26.15 E-value=28 Score=18.79 Aligned_cols=11 Identities=9% Similarity=0.220 Sum_probs=8.9
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
+-+|.|.|.++
T Consensus 72 ~D~G~Y~C~a~ 82 (98)
T 1gl4_B 72 SDAGTYVCTGS 82 (98)
T ss_dssp GGCEEEEEEEE
T ss_pred hhCEEEEEEec
Confidence 45799999986
No 72
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B
Probab=25.84 E-value=28 Score=18.84 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=9.0
Q ss_pred cccceeEEEEe
Q psy1572 27 STGQFQALVQL 37 (74)
Q Consensus 27 ~~G~yqcLV~L 37 (74)
-+|.|.|.|.-
T Consensus 100 D~G~Y~C~v~~ 110 (126)
T 1eaj_A 100 DIGTYQCKVKK 110 (126)
T ss_dssp GCEEEEEEEEE
T ss_pred HCeEEEEEEEc
Confidence 46999999964
No 73
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=25.80 E-value=29 Score=18.53 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=8.8
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
.-.|.|.|.++
T Consensus 72 ~D~G~Y~C~a~ 82 (99)
T 1u2h_A 72 GDAGFYTCKAV 82 (99)
T ss_dssp GGCEEEEEEEE
T ss_pred CCCEEEEEEEE
Confidence 35799999986
No 74
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=25.75 E-value=29 Score=18.65 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=8.8
Q ss_pred cccceeEEEEe
Q psy1572 27 STGQFQALVQL 37 (74)
Q Consensus 27 ~~G~yqcLV~L 37 (74)
-.|.|.|.++=
T Consensus 76 D~G~Y~C~a~N 86 (100)
T 3caf_A 76 DKGNYTCVVEN 86 (100)
T ss_dssp GCEEEEEEEEE
T ss_pred CCEEEEEEEEe
Confidence 47999999863
No 75
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=25.67 E-value=29 Score=18.62 Aligned_cols=12 Identities=17% Similarity=0.182 Sum_probs=9.4
Q ss_pred ccccceeEEEEe
Q psy1572 26 HSTGQFQALVQL 37 (74)
Q Consensus 26 s~~G~yqcLV~L 37 (74)
+-+|.|.|.++=
T Consensus 60 ~d~G~Y~C~a~n 71 (91)
T 3bfo_A 60 EHQGTYWCHVYN 71 (91)
T ss_dssp GGCEEEEEEEEC
T ss_pred HhCEEEEEEEEc
Confidence 357999999874
No 76
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=25.53 E-value=40 Score=20.94 Aligned_cols=25 Identities=12% Similarity=-0.019 Sum_probs=16.4
Q ss_pred ccccceeEEEEeccCCceEeecCCC
Q psy1572 26 HSTGQFQALVQLATYPVAVCHGQGK 50 (74)
Q Consensus 26 s~~G~yqcLV~LST~P~~VCHGsG~ 50 (74)
.-+|.|+|.+.-...+...=+|.|.
T Consensus 220 ~DsG~Y~C~~~~~~~~~~~~~g~gt 244 (250)
T 3esu_F 220 VDSAVYFCARSGLLRYAMDYWGQGT 244 (250)
T ss_dssp GGCEEEEEEEECSSTTCCCEECCCE
T ss_pred ccCEEEEEEEecCCCccHhhcCCCc
Confidence 3469999999863344444566664
No 77
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*
Probab=25.28 E-value=23 Score=19.17 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=9.8
Q ss_pred ccccceeEEEEec
Q psy1572 26 HSTGQFQALVQLA 38 (74)
Q Consensus 26 s~~G~yqcLV~LS 38 (74)
+=+|.|.|.|+-.
T Consensus 82 ~D~G~Y~C~v~~~ 94 (109)
T 2oyp_A 82 DDHGTYCCRIQFP 94 (109)
T ss_dssp GGCEEEEEEECCS
T ss_pred hhCeEEEEEEEcC
Confidence 3479999998753
No 78
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.22 E-value=34 Score=19.14 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=9.3
Q ss_pred ccccceeEEEEe
Q psy1572 26 HSTGQFQALVQL 37 (74)
Q Consensus 26 s~~G~yqcLV~L 37 (74)
.-.|.|.|.++=
T Consensus 72 ~D~G~Y~C~a~n 83 (118)
T 2eo9_A 72 GDTGRYTCIAST 83 (118)
T ss_dssp GGCCCEEEEEEC
T ss_pred CCCEEEEEEEEc
Confidence 457999998863
No 79
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.22 E-value=35 Score=18.81 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=9.4
Q ss_pred ccccceeEEEEe
Q psy1572 26 HSTGQFQALVQL 37 (74)
Q Consensus 26 s~~G~yqcLV~L 37 (74)
+-.|.|.|.++=
T Consensus 73 ~D~G~Y~C~a~n 84 (106)
T 2dlt_A 73 EDEGDYTFVPDG 84 (106)
T ss_dssp TTCSCEEEEEET
T ss_pred CCCEEEEEEEcc
Confidence 457999999863
No 80
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}
Probab=24.97 E-value=30 Score=18.74 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=9.6
Q ss_pred ccccceeEEEEe
Q psy1572 26 HSTGQFQALVQL 37 (74)
Q Consensus 26 s~~G~yqcLV~L 37 (74)
+=.|.|.|.|.-
T Consensus 89 ~D~G~Y~C~v~~ 100 (118)
T 3udw_C 89 EDEGNYTCLFVT 100 (118)
T ss_dssp GGCEEEEEEEEE
T ss_pred HHCeEEEEEEEE
Confidence 347999999875
No 81
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=24.42 E-value=31 Score=19.22 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=8.9
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
+-.|.|.|.++
T Consensus 73 ~D~G~Y~C~a~ 83 (114)
T 2cqv_A 73 EHCGCYTLLVE 83 (114)
T ss_dssp TTCEEEEEEEE
T ss_pred hcCEEEEEEEE
Confidence 35899999885
No 82
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=24.17 E-value=32 Score=18.50 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=9.1
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
+-.|.|.|.++
T Consensus 68 ~D~G~Y~C~a~ 78 (97)
T 2bk8_A 68 LDDGTYRCKVV 78 (97)
T ss_dssp GGCEEEEEEEE
T ss_pred hhCeEEEEEEE
Confidence 45799999986
No 83
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=24.12 E-value=31 Score=19.40 Aligned_cols=11 Identities=9% Similarity=0.449 Sum_probs=8.9
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
+-.|.|+|.++
T Consensus 75 ~d~G~Y~C~a~ 85 (118)
T 1wwc_A 75 YNNGNYTLIAK 85 (118)
T ss_dssp GGCEEEEEEEE
T ss_pred hcCEEEEEEEE
Confidence 45899999875
No 84
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=24.03 E-value=32 Score=18.60 Aligned_cols=12 Identities=8% Similarity=0.180 Sum_probs=9.4
Q ss_pred ccccceeEEEEe
Q psy1572 26 HSTGQFQALVQL 37 (74)
Q Consensus 26 s~~G~yqcLV~L 37 (74)
.-+|.|.|.++-
T Consensus 79 ~D~G~Y~C~a~n 90 (107)
T 3irg_B 79 TDAGVYVCRARN 90 (107)
T ss_dssp GGCEEEEEEEEE
T ss_pred HhCEEEEEEEEc
Confidence 457999999873
No 85
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=23.67 E-value=32 Score=19.17 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=8.8
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
+-+|.|.|.++
T Consensus 82 ~D~G~Y~C~a~ 92 (108)
T 3cx2_A 82 AFTGSYRCEVS 92 (108)
T ss_dssp GGCEEEEEEEE
T ss_pred ccCEEEEEEEe
Confidence 34699999886
No 86
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=23.61 E-value=36 Score=19.79 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=10.0
Q ss_pred eeccccceeEEEE
Q psy1572 24 FLHSTGQFQALVQ 36 (74)
Q Consensus 24 els~~G~yqcLV~ 36 (74)
.++-+|.|.|.++
T Consensus 154 ~~~d~G~Y~C~a~ 166 (182)
T 1rhf_A 154 GVTQSTMFSCEAH 166 (182)
T ss_dssp CCSSCEEEEEEEE
T ss_pred ccccCeEEEEEEE
Confidence 3345799999987
No 87
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.60 E-value=31 Score=18.84 Aligned_cols=11 Identities=9% Similarity=0.453 Sum_probs=8.9
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
.-.|.|.|.++
T Consensus 76 ~D~G~Y~C~a~ 86 (110)
T 2dm3_A 76 RDAGIYTCIAT 86 (110)
T ss_dssp GGCSBBCEEEE
T ss_pred ccCEEEEEEEE
Confidence 35799999886
No 88
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=23.53 E-value=33 Score=18.42 Aligned_cols=11 Identities=9% Similarity=0.353 Sum_probs=8.9
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
.-+|.|.|.++
T Consensus 61 ~D~G~Y~C~a~ 71 (95)
T 4hwu_A 61 RDSGLYACTAA 71 (95)
T ss_dssp GGCEEEEEEEE
T ss_pred ccCEEEEEEEc
Confidence 45799999986
No 89
>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}
Probab=23.26 E-value=32 Score=20.37 Aligned_cols=12 Identities=8% Similarity=0.401 Sum_probs=9.3
Q ss_pred ccccceeEEEEe
Q psy1572 26 HSTGQFQALVQL 37 (74)
Q Consensus 26 s~~G~yqcLV~L 37 (74)
+=.|.|.|.|+=
T Consensus 94 ~D~G~Y~C~v~~ 105 (125)
T 4gos_A 94 TDAGTYKCYIIT 105 (125)
T ss_dssp GGCEEEEEEEEE
T ss_pred HHCEEEEEEEEe
Confidence 347999999863
No 90
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=23.24 E-value=33 Score=19.56 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=9.5
Q ss_pred cccceeEEEEec
Q psy1572 27 STGQFQALVQLA 38 (74)
Q Consensus 27 ~~G~yqcLV~LS 38 (74)
-.|.|+|.+.-+
T Consensus 67 dsG~Y~C~~~n~ 78 (105)
T 2vsd_A 67 DAGTYQCRYQVS 78 (105)
T ss_dssp GCEEEEEEEEEE
T ss_pred HCeEEEEEEEcC
Confidence 469999998753
No 91
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1
Probab=22.82 E-value=35 Score=18.99 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=9.5
Q ss_pred ccccceeEEEEe
Q psy1572 26 HSTGQFQALVQL 37 (74)
Q Consensus 26 s~~G~yqcLV~L 37 (74)
+=+|.|.|.|.-
T Consensus 91 ~D~G~Y~C~v~~ 102 (124)
T 1neu_A 91 SDNGTFTCDVKN 102 (124)
T ss_dssp GGCEEEEEEEEC
T ss_pred hhCEEEEEEEEc
Confidence 347999999974
No 92
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=22.56 E-value=33 Score=26.45 Aligned_cols=15 Identities=40% Similarity=0.539 Sum_probs=11.3
Q ss_pred eeeEEeeeCCCCCceee
Q psy1572 8 DTRVCLISTNGSNSIAF 24 (74)
Q Consensus 8 ~~~v~~~~~~~~n~iee 24 (74)
|.++||+|||| |.||
T Consensus 99 ~~~iNlIDTPG--HvDF 113 (548)
T 3vqt_A 99 DRVVNLLDTPG--HQDF 113 (548)
T ss_dssp TEEEEEECCCC--GGGC
T ss_pred CEEEEEEeCCC--cHHH
Confidence 57889999998 4444
No 93
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=22.34 E-value=36 Score=18.31 Aligned_cols=11 Identities=18% Similarity=0.601 Sum_probs=8.9
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
.-+|.|.|.++
T Consensus 74 ~D~G~Y~C~a~ 84 (103)
T 3qp3_A 74 DDSGTYRAVCT 84 (103)
T ss_dssp GGCEEEEEEEE
T ss_pred ccCEEEEEEEE
Confidence 45799999886
No 94
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Probab=22.04 E-value=37 Score=18.85 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=10.5
Q ss_pred ccccceeEEEEecc
Q psy1572 26 HSTGQFQALVQLAT 39 (74)
Q Consensus 26 s~~G~yqcLV~LST 39 (74)
+=+|.|.|.|.-..
T Consensus 79 ~D~G~Y~C~v~~~~ 92 (110)
T 1ncn_A 79 KDKGLYQCIIHHKK 92 (110)
T ss_dssp GGCEEEEEEEEEEC
T ss_pred HHCEEEEEEEEcCC
Confidence 34699999998553
No 95
>3i84_A Cervical EMMPRIN; CD147, dimerization, cell adhesion, beta-strand swapping; 2.00A {Homo sapiens} PDB: 3i85_A
Probab=21.92 E-value=37 Score=21.26 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=12.0
Q ss_pred ccccceeEEEEeccCCce
Q psy1572 26 HSTGQFQALVQLATYPVA 43 (74)
Q Consensus 26 s~~G~yqcLV~LST~P~~ 43 (74)
.-+|+|+|.. -+.|++
T Consensus 68 ~dSGeY~Cvf--~~eP~~ 83 (98)
T 3i84_A 68 DQWGEYSCVF--LPEPMG 83 (98)
T ss_dssp GCCEEEEEEE--EECCSE
T ss_pred ccCEeEEEEE--CCCCce
Confidence 4589999985 466764
No 96
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.83 E-value=37 Score=18.59 Aligned_cols=11 Identities=9% Similarity=0.374 Sum_probs=8.7
Q ss_pred cccceeEEEEe
Q psy1572 27 STGQFQALVQL 37 (74)
Q Consensus 27 ~~G~yqcLV~L 37 (74)
-+|.|.|.++=
T Consensus 65 D~G~Y~C~a~n 75 (99)
T 2cr3_A 65 DSGLYACVTSS 75 (99)
T ss_dssp TCEEEEEEEEE
T ss_pred HCEEEEEEEEe
Confidence 47999999753
No 97
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.68 E-value=39 Score=18.59 Aligned_cols=11 Identities=9% Similarity=0.462 Sum_probs=8.9
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
.-.|.|.|.++
T Consensus 76 ~D~G~Y~C~a~ 86 (110)
T 2dm2_A 76 DDDGNYTIMAA 86 (110)
T ss_dssp TTCSCCEEEEE
T ss_pred hhCEEEEEEEE
Confidence 45799999886
No 98
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=21.36 E-value=39 Score=18.50 Aligned_cols=11 Identities=0% Similarity=0.326 Sum_probs=8.7
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
+-.|.|+|.++
T Consensus 74 ~D~G~Y~C~a~ 84 (103)
T 1x44_A 74 ADAAEYSVMTT 84 (103)
T ss_dssp TTCSEEEEEET
T ss_pred ccCEEEEEEEC
Confidence 45799999874
No 99
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=21.26 E-value=31 Score=18.69 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=8.8
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
+-.|.|.|.++
T Consensus 74 ~D~G~Y~C~a~ 84 (108)
T 3kvq_A 74 EDEGLYTCQAC 84 (108)
T ss_dssp GGCEEEEEEEC
T ss_pred ccCEEEEEEEE
Confidence 45799999885
No 100
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=21.23 E-value=42 Score=19.79 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=11.2
Q ss_pred eeeeccccceeEEEEe
Q psy1572 22 IAFLHSTGQFQALVQL 37 (74)
Q Consensus 22 ieels~~G~yqcLV~L 37 (74)
|..++-+|.|.|.++=
T Consensus 162 i~~~~d~G~Y~C~a~N 177 (195)
T 2c5d_C 162 VPGLNKTSSFSCEAHN 177 (195)
T ss_dssp ECCCSSCEEEEEEEEE
T ss_pred EcccccCceEEEEEEc
Confidence 3444457999999863
No 101
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=21.18 E-value=39 Score=18.86 Aligned_cols=11 Identities=9% Similarity=0.305 Sum_probs=8.9
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
.-+|.|.|.++
T Consensus 84 ~DsG~Y~C~a~ 94 (122)
T 3s35_X 84 SDQGLYTCAAS 94 (122)
T ss_dssp GGCEEEEEEEE
T ss_pred ccCEEEEEEEc
Confidence 35699999986
No 102
>3vq2_C Lymphocyte antigen 96; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_C* 2z64_C*
Probab=21.06 E-value=43 Score=23.00 Aligned_cols=14 Identities=7% Similarity=0.325 Sum_probs=11.6
Q ss_pred cccceeEEEEeccC
Q psy1572 27 STGQFQALVQLATY 40 (74)
Q Consensus 27 ~~G~yqcLV~LST~ 40 (74)
-.|+|+|++++-..
T Consensus 111 pkG~Y~~v~e~~~g 124 (144)
T 3vq2_C 111 PKGHYRCVAEAIAG 124 (144)
T ss_dssp CSSEEEEEEEEEET
T ss_pred cCCcEEEEEEEecC
Confidence 57899999999644
No 103
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=20.99 E-value=92 Score=20.28 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q psy1572 53 QEAKTVAAHNAIEYLRLMTKS 73 (74)
Q Consensus 53 ~eA~~~AA~NALqyLkiM~~~ 73 (74)
.++-++.|+++|+||+-|-++
T Consensus 270 ~~~~~~~~~~~~~~l~~~~~~ 290 (294)
T 3vni_A 270 EKMLDREAQAALDFSRYVLEC 290 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHHHhh
Confidence 356679999999999987643
No 104
>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 3ula_B* 2z65_C*
Probab=20.95 E-value=42 Score=23.34 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=11.3
Q ss_pred cccceeEEEEecc
Q psy1572 27 STGQFQALVQLAT 39 (74)
Q Consensus 27 ~~G~yqcLV~LST 39 (74)
-.|+|+|++++-.
T Consensus 111 pkG~Y~~~~ea~~ 123 (144)
T 2e56_A 111 SKGKYKCVVEAIS 123 (144)
T ss_dssp CCSEEEEEEEEEE
T ss_pred CCCcEEEEEEEec
Confidence 5799999999866
No 105
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*
Probab=20.61 E-value=65 Score=18.44 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=15.5
Q ss_pred ccccceeEEEEeccCCceEeecCCC
Q psy1572 26 HSTGQFQALVQLATYPVAVCHGQGK 50 (74)
Q Consensus 26 s~~G~yqcLV~LST~P~~VCHGsG~ 50 (74)
+=+|.|.|-|+.... .+=+|.|.
T Consensus 91 ~DsG~Y~C~v~~~~~--~~~fg~GT 113 (120)
T 3noi_A 91 HDASIYVCRVEVLGL--GVGTGNGT 113 (120)
T ss_dssp GGCEEEEEEEEETTT--EEEECCCE
T ss_pred hhCEEEEEEEEECCc--cceeCCCe
Confidence 457999999986543 24466664
No 106
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=20.46 E-value=85 Score=20.94 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=18.5
Q ss_pred eEEeeeCCCCC-ceeeeccccceeEEEEeccCC
Q psy1572 10 RVCLISTNGSN-SIAFLHSTGQFQALVQLATYP 41 (74)
Q Consensus 10 ~v~~~~~~~~n-~ieels~~G~yqcLV~LST~P 41 (74)
++.+..+.+|| .|.|...+|+|..|.--|...
T Consensus 17 ~~s~~~SakG~V~I~Evd~~GkfV~L~N~s~~~ 49 (144)
T 3jt0_A 17 SISHSASATGNVCIEEIDVDGKFIRLKNTSEQD 49 (144)
T ss_dssp --------CCCEEEEEECTTSSEEEEEECSSSC
T ss_pred eEEEecccCCCEEEEEECCCCCEEEEEECCCCc
Confidence 34455566665 689999999999887655543
No 107
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.45 E-value=41 Score=18.88 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=8.9
Q ss_pred ccccceeEEEE
Q psy1572 26 HSTGQFQALVQ 36 (74)
Q Consensus 26 s~~G~yqcLV~ 36 (74)
+-+|.|.|.++
T Consensus 89 ~D~G~Y~C~a~ 99 (118)
T 2e7c_A 89 SDSGEYELSVQ 99 (118)
T ss_dssp TTCEEEEEEEE
T ss_pred hcCEEEEEEEE
Confidence 34799999885
No 108
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A
Probab=20.44 E-value=41 Score=19.48 Aligned_cols=12 Identities=8% Similarity=0.290 Sum_probs=9.4
Q ss_pred cccceeEEEEec
Q psy1572 27 STGQFQALVQLA 38 (74)
Q Consensus 27 ~~G~yqcLV~LS 38 (74)
=+|.|.|.|.-.
T Consensus 96 D~G~Y~C~v~~~ 107 (139)
T 1pko_A 96 DEGGYTCFFRDH 107 (139)
T ss_dssp GCEEEEEEEEET
T ss_pred HCEEEEEEEEcC
Confidence 479999998743
No 109
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=20.33 E-value=41 Score=26.53 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=11.4
Q ss_pred eeeEEeeeCCCCCceee
Q psy1572 8 DTRVCLISTNGSNSIAF 24 (74)
Q Consensus 8 ~~~v~~~~~~~~n~iee 24 (74)
|+.+||+|||| |+||
T Consensus 84 ~~~iNlIDTPG--HvDF 98 (709)
T 4fn5_A 84 NYRVNVIDTPG--HVDF 98 (709)
T ss_dssp CEEEEEECCCS--CTTC
T ss_pred CEEEEEEeCCC--Cccc
Confidence 57899999998 4544
No 110
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=20.20 E-value=42 Score=18.94 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=8.3
Q ss_pred cccceeEEEE
Q psy1572 27 STGQFQALVQ 36 (74)
Q Consensus 27 ~~G~yqcLV~ 36 (74)
-.|.|.|.++
T Consensus 74 D~G~Y~C~a~ 83 (100)
T 3knb_A 74 DGGLYTLSLG 83 (100)
T ss_dssp GCEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 4799999985
Done!