Your job contains 1 sequence.
>psy1572
MQISGLLDTRVCLISTNGSNSIAFLHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAA
HNAIEYLRLMTKSK
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1572
(74 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0032515 - symbol:loqs "loquacious" species:7227 "D... 149 9.5e-10 1
ZFIN|ZDB-GENE-050309-206 - symbol:prkra "protein kinase, ... 132 2.5e-08 1
UNIPROTKB|B4DJC7 - symbol:PRKRA "cDNA FLJ60590, highly si... 127 2.6e-08 1
UNIPROTKB|Q2HJ92 - symbol:PRKRA "Interferon-inducible dou... 129 6.5e-08 1
UNIPROTKB|J9P4M2 - symbol:PRKRA "Uncharacterized protein"... 127 1.1e-07 1
UNIPROTKB|O75569 - symbol:PRKRA "Interferon-inducible dou... 127 1.1e-07 1
UNIPROTKB|F1RZE0 - symbol:PRKRA "Uncharacterized protein"... 127 1.1e-07 1
MGI|MGI:1344375 - symbol:Prkra "protein kinase, interfero... 127 1.1e-07 1
RGD|1306707 - symbol:Prkra "protein kinase, interferon in... 127 1.1e-07 1
UNIPROTKB|Q4V8C7 - symbol:Prkra "Interferon-inducible dou... 127 1.1e-07 1
UNIPROTKB|E2RQ94 - symbol:PRKRA "Uncharacterized protein"... 127 1.4e-07 1
UNIPROTKB|Q91836 - symbol:prkra-b "Interferon-inducible d... 120 5.7e-07 1
ZFIN|ZDB-GENE-030131-8085 - symbol:tarbp2 "TAR (HIV) RNA ... 121 6.0e-07 1
UNIPROTKB|Q7ZYA5 - symbol:prkra-a "Interferon-inducible d... 120 6.2e-07 1
MGI|MGI:103027 - symbol:Tarbp2 "TAR (HIV) RNA binding pro... 117 1.8e-06 1
UNIPROTKB|J9NVY5 - symbol:TARBP2 "Uncharacterized protein... 113 4.5e-06 1
UNIPROTKB|Q0IIG6 - symbol:TARBP2 "RISC-loading complex su... 113 5.0e-06 1
UNIPROTKB|E2RMV1 - symbol:TARBP2 "Uncharacterized protein... 113 5.0e-06 1
UNIPROTKB|Q15633 - symbol:TARBP2 "RISC-loading complex su... 113 5.0e-06 1
UNIPROTKB|F1SFP3 - symbol:TARBP2 "Uncharacterized protein... 113 5.0e-06 1
RGD|1307375 - symbol:Tarbp2 "TAR (HIV-1) RNA binding prot... 109 1.4e-05 1
UNIPROTKB|Q3SWU0 - symbol:Tarbp2 "RISC-loading complex su... 109 1.4e-05 1
>FB|FBgn0032515 [details] [associations]
symbol:loqs "loquacious" species:7227 "Drosophila
melanogaster" [GO:0003725 "double-stranded RNA binding"
evidence=ISS] [GO:0031054 "pre-miRNA processing" evidence=IDA;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030718 "germ-line stem
cell maintenance" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IDA;IMP] [GO:0007417 "central nervous system
development" evidence=IMP] [GO:0070918 "production of small RNA
involved in gene silencing by RNA" evidence=IDA] [GO:0010586 "miRNA
metabolic process" evidence=IDA] [GO:0070920 "regulation of
production of small RNA involved in gene silencing by RNA"
evidence=IDA] [GO:0016442 "RNA-induced silencing complex"
evidence=IPI] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005737 EMBL:AE014134
Gene3D:3.30.160.20 GO:GO:0007417 GO:GO:0003725 GO:GO:0010586
GO:GO:0031054 GO:GO:0030422 GO:GO:0030718 GO:GO:0048132
GeneTree:ENSGT00530000063014 HSSP:Q91836 FlyBase:FBgn0032515
GO:GO:0070920 UniGene:Dm.421 GeneID:34751 KEGG:dme:Dmel_CG6866
CTD:34751 GenomeRNAi:34751 NextBio:790023 EMBL:AY071070
EMBL:DQ118034 RefSeq:NP_609646.1 SMR:Q9VJY9 DIP:DIP-18138N
IntAct:Q9VJY9 STRING:Q9VJY9 EnsemblMetazoa:FBtr0080498
UCSC:CG6866-RB InParanoid:Q9VJY9 OMA:QFEVTYV Uniprot:Q9VJY9
Length = 465
Score = 149 (57.5 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 28/45 (62%), Positives = 35/45 (77%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTK 72
+GQFQ LVQL+T PV VCHG G T +A+ AA NA+EYL++MTK
Sbjct: 420 SGQFQCLVQLSTLPVGVCHGSGPTAADAQRHAAQNALEYLKIMTK 464
>ZFIN|ZDB-GENE-050309-206 [details] [associations]
symbol:prkra "protein kinase, interferon-inducible
double stranded RNA dependent activator" species:7955 "Danio rerio"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0030422
"production of siRNA involved in RNA interference" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016301 "kinase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001159 InterPro:IPR007110
Pfam:PF00035 PROSITE:PS50137 PROSITE:PS50835 SMART:SM00358
InterPro:IPR014720 ZFIN:ZDB-GENE-050309-206 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 GeneTree:ENSGT00530000063014
EMBL:FP102120 IPI:IPI00920134 PRIDE:F1Q8C8
Ensembl:ENSDART00000140917 Bgee:F1Q8C8 Uniprot:F1Q8C8
Length = 289
Score = 132 (51.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 29 GQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
GQ+Q LV+L+T PV VCHG G T A AAHNA++Y++ M SK
Sbjct: 244 GQYQCLVELSTRPVTVCHGSGVTSSNAHNAAAHNALQYIK-MVASK 288
>UNIPROTKB|B4DJC7 [details] [associations]
symbol:PRKRA "cDNA FLJ60590, highly similar to
Interferon-inducible double strandedRNA-dependent protein kinase
activator A" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0016301 "kinase
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0006917
"induction of apoptosis" evidence=IEA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0042473 "outer ear morphogenesis"
evidence=IEA] [GO:0042474 "middle ear morphogenesis" evidence=IEA]
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20
GO:GO:0006468 GO:GO:0005622 GO:GO:0016301 GO:GO:0003725
GO:GO:0048705 GO:GO:0042474 GO:GO:0042473 EMBL:AC009948
HOGENOM:HOG000231919 OrthoDB:EOG41RPVB UniGene:Hs.570274
HGNC:HGNC:9438 HOVERGEN:HBG001700 EMBL:AK296019 IPI:IPI01009958
SMR:B4DJC7 STRING:B4DJC7 Ensembl:ENST00000438687 UCSC:uc002umc.3
Uniprot:B4DJC7
Length = 200
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 151 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 200
>UNIPROTKB|Q2HJ92 [details] [associations]
symbol:PRKRA "Interferon-inducible double stranded
RNA-dependent protein kinase activator A" species:9913 "Bos taurus"
[GO:0048705 "skeletal system morphogenesis" evidence=ISS]
[GO:0042474 "middle ear morphogenesis" evidence=ISS] [GO:0042473
"outer ear morphogenesis" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0006917 "induction of apoptosis"
evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
[GO:0005622 "intracellular" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005737 GO:GO:0048471
GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20 GO:GO:0006468
GO:GO:0003725 GO:GO:0030422 GO:GO:0048705 GO:GO:0042474
GO:GO:0042473 CTD:8575 EMBL:BC113246 IPI:IPI00711015
RefSeq:NP_001039335.1 UniGene:Bt.13570 ProteinModelPortal:Q2HJ92
SMR:Q2HJ92 PRIDE:Q2HJ92 Ensembl:ENSBTAT00000001451 GeneID:282875
KEGG:bta:282875 eggNOG:NOG245126 GeneTree:ENSGT00530000063014
HOGENOM:HOG000231919 InParanoid:Q2HJ92 OMA:PVTVCHG
OrthoDB:EOG41RPVB NextBio:20806403 ArrayExpress:Q2HJ92
Uniprot:Q2HJ92
Length = 313
Score = 129 (50.5 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 264 LSANGQYQCLAELSTSPITVCHGSGISCSSAQSDAAHNALQYLKIIAERK 313
>UNIPROTKB|J9P4M2 [details] [associations]
symbol:PRKRA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 CTD:8575 GeneTree:ENSGT00530000063014
EMBL:AAEX03017812 RefSeq:XP_545545.2 Ensembl:ENSCAFT00000044833
GeneID:488423 KEGG:cfa:488423 Uniprot:J9P4M2
Length = 313
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 264 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>UNIPROTKB|O75569 [details] [associations]
symbol:PRKRA "Interferon-inducible double stranded
RNA-dependent protein kinase activator A" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0006917
"induction of apoptosis" evidence=IEA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0042473 "outer ear morphogenesis"
evidence=IEA] [GO:0042474 "middle ear morphogenesis" evidence=IEA]
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042803 "protein
homodimerization activity" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IDA] [GO:0009615 "response to virus"
evidence=TAS] [GO:0006955 "immune response" evidence=TAS]
[GO:0008047 "enzyme activator activity" evidence=TAS] [GO:0008285
"negative regulation of cell proliferation" evidence=TAS]
[GO:0043085 "positive regulation of catalytic activity"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005737
GO:GO:0048471 GO:GO:0008285 GO:GO:0006955 GO:GO:0006950
GO:GO:0006917 Gene3D:3.30.160.20 GO:GO:0006468 GO:GO:0009615
EMBL:CH471058 GO:GO:0003725 GO:GO:0030422
Pathway_Interaction_DB:ceramidepathway GO:GO:0008047 GO:GO:0048705
GO:GO:0042474 GO:GO:0042473 EMBL:AC009948 CTD:8575 eggNOG:NOG245126
HOGENOM:HOG000231919 OMA:PVTVCHG OrthoDB:EOG41RPVB EMBL:AF072860
EMBL:AF083033 EMBL:AY251164 EMBL:AL136615 EMBL:AL833867
EMBL:BT007243 EMBL:AK290601 EMBL:CR533525 EMBL:AK223107
EMBL:BC009470 IPI:IPI00021167 IPI:IPI00718940 IPI:IPI00719567
RefSeq:NP_001132989.1 RefSeq:NP_001132990.1 RefSeq:NP_003681.1
UniGene:Hs.570274 PDB:2DIX PDBsum:2DIX ProteinModelPortal:O75569
SMR:O75569 IntAct:O75569 MINT:MINT-5003897 STRING:O75569
PhosphoSite:O75569 PaxDb:O75569 PRIDE:O75569 DNASU:8575
Ensembl:ENST00000325748 Ensembl:ENST00000432031
Ensembl:ENST00000487082 GeneID:8575 KEGG:hsa:8575 UCSC:uc002umd.3
UCSC:uc002ume.3 GeneCards:GC02M179260 HGNC:HGNC:9438 HPA:CAB004648
MIM:603424 MIM:612067 neXtProt:NX_O75569 Orphanet:210571
PharmGKB:PA33780 HOVERGEN:HBG001700 InParanoid:O75569
PhylomeDB:O75569 EvolutionaryTrace:O75569 GenomeRNAi:8575
NextBio:32165 ArrayExpress:O75569 Bgee:O75569 CleanEx:HS_PRKRA
CleanEx:HS_RAX Genevestigator:O75569 GermOnline:ENSG00000180228
Uniprot:O75569
Length = 313
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 264 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>UNIPROTKB|F1RZE0 [details] [associations]
symbol:PRKRA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0042474 "middle ear morphogenesis" evidence=IEA] [GO:0042473
"outer ear morphogenesis" evidence=IEA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IEA] [GO:0006950
"response to stress" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0006468 "protein phosphorylation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
GO:GO:0005737 GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20
GO:GO:0006468 GO:GO:0003725 GO:GO:0030422 GO:GO:0048705
GO:GO:0042474 GO:GO:0042473 CTD:8575 GeneTree:ENSGT00530000063014
OMA:PVTVCHG EMBL:CU550661 RefSeq:XP_001927740.1 UniGene:Ssc.6789
Ensembl:ENSSSCT00000017418 GeneID:100155653 KEGG:ssc:100155653
Uniprot:F1RZE0
Length = 313
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 264 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>MGI|MGI:1344375 [details] [associations]
symbol:Prkra "protein kinase, interferon inducible double
stranded RNA dependent activator" species:10090 "Mus musculus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006468 "protein
phosphorylation" evidence=IDA] [GO:0006917 "induction of apoptosis"
evidence=IDA] [GO:0006950 "response to stress" evidence=IDA]
[GO:0016301 "kinase activity" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=ISO] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0042473 "outer ear
morphogenesis" evidence=IMP] [GO:0042474 "middle ear morphogenesis"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0048705 "skeletal system morphogenesis"
evidence=IMP] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 MGI:MGI:1344375 GO:GO:0005737
GO:GO:0048471 GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20
GO:GO:0006468 GO:GO:0003725 GO:GO:0030422 GO:GO:0048705
GO:GO:0042474 GO:GO:0042473 CTD:8575 eggNOG:NOG245126
GeneTree:ENSGT00530000063014 HOGENOM:HOG000231919 OMA:PVTVCHG
OrthoDB:EOG41RPVB HOVERGEN:HBG001700 EMBL:AF083032 EMBL:AK012798
EMBL:AK155112 EMBL:BC011311 IPI:IPI00471256 RefSeq:NP_036001.1
UniGene:Mm.277250 ProteinModelPortal:Q9WTX2 SMR:Q9WTX2
STRING:Q9WTX2 PhosphoSite:Q9WTX2 PaxDb:Q9WTX2 PRIDE:Q9WTX2
Ensembl:ENSMUST00000002808 GeneID:23992 KEGG:mmu:23992
InParanoid:Q9WTX2 NextBio:303897 Bgee:Q9WTX2 CleanEx:MM_RAX
Genevestigator:Q9WTX2 GermOnline:ENSMUSG00000002731 Uniprot:Q9WTX2
Length = 313
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 264 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>RGD|1306707 [details] [associations]
symbol:Prkra "protein kinase, interferon inducible double
stranded RNA dependent activator" species:10116 "Rattus norvegicus"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005622 "intracellular"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS]
[GO:0006468 "protein phosphorylation" evidence=IEA;ISO] [GO:0006917
"induction of apoptosis" evidence=IEA;ISO] [GO:0006950 "response to
stress" evidence=IEA;ISO] [GO:0016301 "kinase activity"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA;ISO;ISS] [GO:0042473 "outer ear
morphogenesis" evidence=IEA;ISO] [GO:0042474 "middle ear
morphogenesis" evidence=IEA;ISO] [GO:0042803 "protein
homodimerization activity" evidence=IEA;ISO] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0048705
"skeletal system morphogenesis" evidence=IEA;ISO]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 RGD:1306707 GO:GO:0005737 GO:GO:0048471
GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20 GO:GO:0006468
GO:GO:0003725 GO:GO:0030422 GO:GO:0048705 GO:GO:0042474
GO:GO:0042473 CTD:8575 eggNOG:NOG245126 HOGENOM:HOG000231919
OrthoDB:EOG41RPVB HOVERGEN:HBG001700 EMBL:BC097446 IPI:IPI00187767
RefSeq:NP_001019951.1 UniGene:Rn.3217 ProteinModelPortal:Q4V8C7
SMR:Q4V8C7 PhosphoSite:Q4V8C7 PRIDE:Q4V8C7 GeneID:311130
KEGG:rno:311130 UCSC:RGD:1306707 InParanoid:Q4V8C7 NextBio:663036
Genevestigator:Q4V8C7 GermOnline:ENSRNOG00000011195 Uniprot:Q4V8C7
Length = 313
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 264 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>UNIPROTKB|Q4V8C7 [details] [associations]
symbol:Prkra "Interferon-inducible double stranded
RNA-dependent protein kinase activator A" species:10116 "Rattus
norvegicus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 RGD:1306707 GO:GO:0005737 GO:GO:0048471
GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20 GO:GO:0006468
GO:GO:0003725 GO:GO:0030422 GO:GO:0048705 GO:GO:0042474
GO:GO:0042473 CTD:8575 eggNOG:NOG245126 HOGENOM:HOG000231919
OrthoDB:EOG41RPVB HOVERGEN:HBG001700 EMBL:BC097446 IPI:IPI00187767
RefSeq:NP_001019951.1 UniGene:Rn.3217 ProteinModelPortal:Q4V8C7
SMR:Q4V8C7 PhosphoSite:Q4V8C7 PRIDE:Q4V8C7 GeneID:311130
KEGG:rno:311130 UCSC:RGD:1306707 InParanoid:Q4V8C7 NextBio:663036
Genevestigator:Q4V8C7 GermOnline:ENSRNOG00000011195 Uniprot:Q4V8C7
Length = 313
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 264 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>UNIPROTKB|E2RQ94 [details] [associations]
symbol:PRKRA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GeneTree:ENSGT00530000063014 OMA:PVTVCHG
EMBL:AAEX03017812 Ensembl:ENSCAFT00000021978 NextBio:20861775
Uniprot:E2RQ94
Length = 351
Score = 127 (49.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L + GQ+Q L +L+T P+ VCHG G + A++ AAHNA++YL+++ + K
Sbjct: 302 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 351
>UNIPROTKB|Q91836 [details] [associations]
symbol:prkra-b "Interferon-inducible double stranded
RNA-dependent protein kinase activator A homolog B" species:8355
"Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030422
"production of siRNA involved in RNA interference" evidence=ISS]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 GO:GO:0005737 GO:GO:0048471 GO:GO:0005730
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0030422 UniGene:Xl.852
Xenbase:XB-GENE-940708 EMBL:M96370 PIR:S27945 PDB:1DI2 PDBsum:1DI2
ProteinModelPortal:Q91836 SMR:Q91836 EvolutionaryTrace:Q91836
Uniprot:Q91836
Length = 298
Score = 120 (47.3 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L GQ+Q L +L+T P+ VCHG G + A AAHNA++YL++M K
Sbjct: 249 LSVNGQYQCLAELSTNPITVCHGTGISCGNAHNDAAHNALQYLKIMCIKK 298
>ZFIN|ZDB-GENE-030131-8085 [details] [associations]
symbol:tarbp2 "TAR (HIV) RNA binding protein 2"
species:7955 "Danio rerio" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-8085 GO:GO:0005737 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0031047 eggNOG:NOG245126 HOGENOM:HOG000231919
CTD:6895 OrthoDB:EOG48GW3W EMBL:BC055390 IPI:IPI00481011
RefSeq:NP_956291.1 UniGene:Dr.80037 HSSP:Q91836
ProteinModelPortal:Q7SXR1 SMR:Q7SXR1 STRING:Q7SXR1 PRIDE:Q7SXR1
GeneID:336141 KEGG:dre:336141 InParanoid:Q7SXR1 NextBio:20811460
Uniprot:Q7SXR1
Length = 346
Score = 121 (47.7 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 28 TGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
+G +Q LV+L+T P+ VCHG + A+ AAHNA++YL++M K
Sbjct: 300 SGLYQCLVELSTQPITVCHGFASSLDAARASAAHNALQYLKIMAGGK 346
>UNIPROTKB|Q7ZYA5 [details] [associations]
symbol:prkra-a "Interferon-inducible double stranded
RNA-dependent protein kinase activator A homolog A" species:8355
"Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030422
"production of siRNA involved in RNA interference" evidence=ISS]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 GO:GO:0005634 GO:GO:0005737 GO:GO:0048471
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0030422 EMBL:BC043873
RefSeq:NP_001079500.1 UniGene:Xl.852 ProteinModelPortal:Q7ZYA5
SMR:Q7ZYA5 GeneID:379187 KEGG:xla:379187 CTD:8575
Xenbase:XB-GENE-940708 Uniprot:Q7ZYA5
Length = 309
Score = 120 (47.3 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L GQ+Q L +L+T P+ VCHG G + A AAHNA++YL++M K
Sbjct: 260 LSVNGQYQCLAELSTNPITVCHGTGISCGNAHNDAAHNALQYLKIMCIKK 309
>MGI|MGI:103027 [details] [associations]
symbol:Tarbp2 "TAR (HIV) RNA binding protein 2" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=ISO] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISO] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0031047
"gene silencing by RNA" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=ISO] [GO:0035197 "siRNA binding" evidence=ISO]
[GO:0035280 "miRNA loading onto RISC involved in gene silencing by
miRNA" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0045070 "positive regulation of viral
genome replication" evidence=ISO] [GO:0046782 "regulation of viral
transcription" evidence=ISO] [GO:0050689 "negative regulation of
defense response to virus by host" evidence=ISO] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
MGI:MGI:103027 GO:GO:0005634 GO:GO:0005737 GO:GO:0048471
GO:GO:0006417 Gene3D:3.30.160.20 EMBL:CH466550 GO:GO:0003725
GO:GO:0035197 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0045070 GO:GO:0050689 eggNOG:NOG245126
GeneTree:ENSGT00530000063014 HOGENOM:HOG000231919
HOVERGEN:HBG001700 CTD:6895 OMA:CRVERFV OrthoDB:EOG48GW3W
GO:GO:0035280 GO:GO:0046782 EMBL:U79962 EMBL:BC002028
IPI:IPI00125574 RefSeq:NP_033345.2 UniGene:Mm.291485
ProteinModelPortal:P97473 SMR:P97473 IntAct:P97473 STRING:P97473
PhosphoSite:P97473 PaxDb:P97473 PRIDE:P97473
Ensembl:ENSMUST00000023813 GeneID:21357 KEGG:mmu:21357
InParanoid:Q99M41 NextBio:300566 Bgee:P97473 CleanEx:MM_TARBP2
Genevestigator:P97473 GermOnline:ENSMUSG00000023051 Uniprot:P97473
Length = 365
Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VC+G T++ A+ AAH A++YLR+M SK
Sbjct: 316 LSLSGLCQCLVELSTQPATVCYGSATTREAARGDAAHRALQYLRIMAGSK 365
>UNIPROTKB|J9NVY5 [details] [associations]
symbol:TARBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GeneTree:ENSGT00530000063014 EMBL:AAEX03014978
EMBL:AAEX03014979 Ensembl:ENSCAFT00000049535 Uniprot:J9NVY5
Length = 344
Score = 113 (44.8 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 295 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 344
>UNIPROTKB|Q0IIG6 [details] [associations]
symbol:TARBP2 "RISC-loading complex subunit TARBP2"
species:9913 "Bos taurus" [GO:0035197 "siRNA binding" evidence=ISS]
[GO:0045070 "positive regulation of viral genome replication"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0046782
"regulation of viral transcription" evidence=ISS] [GO:0030423
"targeting of mRNA for destruction involved in RNA interference"
evidence=ISS] [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0050689 "negative regulation of defense response
to virus by host" evidence=ISS] [GO:0031054 "pre-miRNA processing"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0035280 "miRNA loading onto RISC involved in gene silencing by
miRNA" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005634 GO:GO:0005737
GO:GO:0048471 GO:GO:0006417 Gene3D:3.30.160.20 GO:GO:0003725
GO:GO:0035197 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0045070 GO:GO:0050689 eggNOG:NOG245126
GeneTree:ENSGT00530000063014 HOGENOM:HOG000231919 EMBL:BC122653
EMBL:CK769751 IPI:IPI00712425 RefSeq:NP_001069146.2 UniGene:Bt.4728
STRING:Q0IIG6 Ensembl:ENSBTAT00000000558 GeneID:514674
KEGG:bta:514674 CTD:6895 InParanoid:Q0IIG6 OMA:CRVERFV
OrthoDB:EOG48GW3W NextBio:20871458 GO:GO:0035280 GO:GO:0046782
Uniprot:Q0IIG6
Length = 366
Score = 113 (44.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSAATREAARGEAARRALQYLKIMAGSK 366
>UNIPROTKB|E2RMV1 [details] [associations]
symbol:TARBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050689 "negative regulation of defense
response to virus by host" evidence=IEA] [GO:0046782 "regulation of
viral transcription" evidence=IEA] [GO:0045070 "positive regulation
of viral genome replication" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0035280 "miRNA loading
onto RISC involved in gene silencing by miRNA" evidence=IEA]
[GO:0035197 "siRNA binding" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0030422
"production of siRNA involved in RNA interference" evidence=IEA]
[GO:0016442 "RNA-induced silencing complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0035197 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 GO:GO:0045070 GO:GO:0050689
GeneTree:ENSGT00530000063014 OMA:CRVERFV GO:GO:0035280
GO:GO:0046782 EMBL:AAEX03014978 EMBL:AAEX03014979
Ensembl:ENSCAFT00000011057 Uniprot:E2RMV1
Length = 366
Score = 113 (44.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>UNIPROTKB|Q15633 [details] [associations]
symbol:TARBP2 "RISC-loading complex subunit TARBP2"
species:9606 "Homo sapiens" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0006469 "negative regulation of protein kinase
activity" evidence=TAS] [GO:0046782 "regulation of viral
transcription" evidence=IDA] [GO:0045070 "positive regulation of
viral genome replication" evidence=IDA] [GO:0050689 "negative
regulation of defense response to virus by host" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042803 "protein
homodimerization activity" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IMP] [GO:0031054
"pre-miRNA processing" evidence=IDA] [GO:0035280 "miRNA loading
onto RISC involved in gene silencing by miRNA" evidence=IDA]
[GO:0035197 "siRNA binding" evidence=IDA] [GO:0016442 "RNA-induced
silencing complex" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 GO:GO:0005829 GO:GO:0005634 GO:GO:0048471
GO:GO:0006417 GO:GO:0006469 Gene3D:3.30.160.20 EMBL:CH471054
GO:GO:0006357 GO:GO:0003725 GO:GO:0035197 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 GO:GO:0045070
GO:GO:0050689 eggNOG:NOG245126 HOGENOM:HOG000231919
HOVERGEN:HBG001700 CTD:6895 OMA:CRVERFV OrthoDB:EOG48GW3W
GO:GO:0035280 GO:GO:0046782 EMBL:M60801 EMBL:U08998 EMBL:BT007140
EMBL:BC005860 EMBL:AF281068 IPI:IPI00472583 IPI:IPI00847568
PIR:G01420 RefSeq:NP_004169.3 RefSeq:NP_599150.1 RefSeq:NP_599151.2
UniGene:Hs.326 PDB:2CPN PDB:3ADL PDB:3LLH PDBsum:2CPN PDBsum:3ADL
PDBsum:3LLH ProteinModelPortal:Q15633 SMR:Q15633 DIP:DIP-29665N
IntAct:Q15633 MINT:MINT-92451 STRING:Q15633 PhosphoSite:Q15633
DMDM:209572714 PaxDb:Q15633 PRIDE:Q15633 DNASU:6895
Ensembl:ENST00000266987 Ensembl:ENST00000394357
Ensembl:ENST00000456234 GeneID:6895 KEGG:hsa:6895 UCSC:uc001sdo.3
GeneCards:GC12P053890 HGNC:HGNC:11569 HPA:HPA051181 MIM:605053
neXtProt:NX_Q15633 PharmGKB:PA36334 InParanoid:Q15633
PhylomeDB:Q15633 BindingDB:Q15633 ChEMBL:CHEMBL2098
EvolutionaryTrace:Q15633 GenomeRNAi:6895 NextBio:26949
ArrayExpress:Q15633 Bgee:Q15633 CleanEx:HS_TARBP2
Genevestigator:Q15633 GermOnline:ENSG00000139546 Uniprot:Q15633
Length = 366
Score = 113 (44.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>UNIPROTKB|F1SFP3 [details] [associations]
symbol:TARBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050689 "negative regulation of defense response to
virus by host" evidence=IEA] [GO:0046782 "regulation of viral
transcription" evidence=IEA] [GO:0045070 "positive regulation of
viral genome replication" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0035280 "miRNA loading
onto RISC involved in gene silencing by miRNA" evidence=IEA]
[GO:0035197 "siRNA binding" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0030422
"production of siRNA involved in RNA interference" evidence=IEA]
[GO:0016442 "RNA-induced silencing complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0035197 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 GO:GO:0045070 GO:GO:0050689
GeneTree:ENSGT00530000063014 CTD:6895 OMA:CRVERFV GO:GO:0035280
GO:GO:0046782 EMBL:CU928648 RefSeq:XP_003126242.1 UniGene:Ssc.19557
Ensembl:ENSSSCT00000000296 GeneID:100518071 KEGG:ssc:100518071
Uniprot:F1SFP3
Length = 366
Score = 113 (44.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VCHG T++ A+ AA A++YL++M SK
Sbjct: 317 LSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>RGD|1307375 [details] [associations]
symbol:Tarbp2 "TAR (HIV-1) RNA binding protein 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016442 "RNA-induced
silencing complex" evidence=IEA;ISO;ISS] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IEA;ISO;ISS]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA;ISO;ISS] [GO:0031054 "pre-miRNA
processing" evidence=IEA;ISO;ISS] [GO:0035197 "siRNA binding"
evidence=IEA;ISO;ISS] [GO:0035280 "miRNA loading onto RISC involved
in gene silencing by miRNA" evidence=IEA;ISO] [GO:0042803 "protein
homodimerization activity" evidence=IEA;ISO] [GO:0045070 "positive
regulation of viral genome replication" evidence=IEA;ISO;ISS]
[GO:0046782 "regulation of viral transcription"
evidence=IEA;ISO;ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0050689 "negative regulation of defense response
to virus by host" evidence=IEA;ISO;ISS] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
RGD:1307375 GO:GO:0005634 GO:GO:0005737 GO:GO:0048471 GO:GO:0006417
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0035197 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 EMBL:CH474035
GO:GO:0045070 GO:GO:0050689 eggNOG:NOG245126 HOGENOM:HOG000231919
CTD:6895 OrthoDB:EOG48GW3W GO:GO:0035280 GO:GO:0046782
EMBL:BC104690 IPI:IPI00366486 RefSeq:NP_001030113.1
UniGene:Rn.17227 HSSP:Q15633 ProteinModelPortal:Q3SWU0 SMR:Q3SWU0
STRING:Q3SWU0 GeneID:363006 KEGG:rno:363006 UCSC:RGD:1307375
NextBio:682113 ArrayExpress:Q3SWU0 Genevestigator:Q3SWU0
Uniprot:Q3SWU0
Length = 365
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VC+G T++ A+ AA A++YLR+M SK
Sbjct: 316 LSLSGLCQCLVELSTQPATVCYGSATTREAARGDAARRALQYLRIMAGSK 365
>UNIPROTKB|Q3SWU0 [details] [associations]
symbol:Tarbp2 "RISC-loading complex subunit TARBP2"
species:10116 "Rattus norvegicus" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0035280 "miRNA loading onto RISC
involved in gene silencing by miRNA" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 RGD:1307375 GO:GO:0005634 GO:GO:0005737
GO:GO:0048471 GO:GO:0006417 Gene3D:3.30.160.20 GO:GO:0003725
GO:GO:0035197 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 EMBL:CH474035 GO:GO:0045070 GO:GO:0050689
eggNOG:NOG245126 HOGENOM:HOG000231919 CTD:6895 OrthoDB:EOG48GW3W
GO:GO:0035280 GO:GO:0046782 EMBL:BC104690 IPI:IPI00366486
RefSeq:NP_001030113.1 UniGene:Rn.17227 HSSP:Q15633
ProteinModelPortal:Q3SWU0 SMR:Q3SWU0 STRING:Q3SWU0 GeneID:363006
KEGG:rno:363006 UCSC:RGD:1307375 NextBio:682113 ArrayExpress:Q3SWU0
Genevestigator:Q3SWU0 Uniprot:Q3SWU0
Length = 365
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 25 LHSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
L +G Q LV+L+T P VC+G T++ A+ AA A++YLR+M SK
Sbjct: 316 LSLSGLCQCLVELSTQPATVCYGSATTREAARGDAARRALQYLRIMAGSK 365
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.128 0.358 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 74 74 0.00091 102 3 10 22 0.46 28
29 0.46 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 528 (56 KB)
Total size of DFA: 109 KB (2075 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.68u 0.08s 10.76t Elapsed: 00:00:03
Total cpu time: 10.68u 0.08s 10.76t Elapsed: 00:00:03
Start: Thu Aug 15 14:45:53 2013 End: Thu Aug 15 14:45:56 2013