RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1572
         (74 letters)



>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding
          protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 84

 Score = 29.4 bits (66), Expect = 0.012
 Identities = 5/30 (16%), Positives = 11/30 (36%)

Query: 44 VCHGQGKTQQEAKTVAAHNAIEYLRLMTKS 73
               G +++ AK   A   ++ +   T  
Sbjct: 51 TYEASGPSKKTAKLHVAVKVLQAMGYPTGF 80


>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain
          {Thermotoga maritima [TaxId: 2336]}
          Length = 69

 Score = 26.0 bits (57), Expect = 0.17
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 47 GQGKTQQEAKTVAAHNAIEYL 67
          G+G+T++EA+  AA  A E L
Sbjct: 48 GKGRTKKEAEKEAARIAYEKL 68


>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain
          {Aquifex aeolicus [TaxId: 63363]}
          Length = 68

 Score = 24.9 bits (54), Expect = 0.53
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 45 CHGQGKTQQEAKTVAAHNAIEYL 67
            G+GK+++EA+  AA   I+ L
Sbjct: 45 TLGEGKSKKEAEQRAAEELIKLL 67


>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 99

 Score = 25.1 bits (54), Expect = 0.54
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 44 VCHGQGKTQQEAKTVAAHNAIEYL 67
             G    +++A++ AA + + YL
Sbjct: 50 AGMGNSTNKKDAQSNAARDFVNYL 73


>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 81

 Score = 24.0 bits (52), Expect = 1.2
 Identities = 6/34 (17%), Positives = 14/34 (41%)

Query: 2  QISGLLDTRVCLISTNGSNSIAFLHSTGQFQALV 35
          ++   +D R+  I  +G   I    +  +   L+
Sbjct: 2  KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLI 35


>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 76

 Score = 23.8 bits (51), Expect = 1.3
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 38 ATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68
                V  G+G  ++ +K  AA   +  L+
Sbjct: 44 CIVGSIVTEGEGNGKKVSKKRAAEKMLVELQ 74


>d2bmob1 d.17.4.4 (B:1-194) Nitrobenzene dioxygenase beta subunit,
          NBDO-beta {Comamonas sp. JS765 [TaxId: 58226]}
          Length = 194

 Score = 24.5 bits (53), Expect = 1.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 53 QEAKTVAAHNAIEYLRL 69
          QE K V+AH+A E+ R 
Sbjct: 6  QEDKLVSAHDAEEFHRF 22


>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 71

 Score = 23.6 bits (51), Expect = 1.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 44 VCHGQGKTQQEAKTVAAHNAIEYL 67
             G G+ ++ AK  AA +A+  +
Sbjct: 43 FFEGSGRNKKLAKARAAQSALATV 66


>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A,
          second dsRBD {Xenopus laevis [TaxId: 8355]}
          Length = 69

 Score = 23.1 bits (49), Expect = 2.8
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 38 ATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68
                V  G G ++Q AK VAA   +   +
Sbjct: 38 CRVETFVETGSGTSKQVAKRVAAEKLLTKFK 68


>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 89

 Score = 22.9 bits (48), Expect = 4.2
 Identities = 9/49 (18%), Positives = 15/49 (30%)

Query: 26 HSTGQFQALVQLATYPVAVCHGQGKTQQEAKTVAAHNAIEYLRLMTKSK 74
              + +  V        V  G G  ++ AK  AA   +  L     + 
Sbjct: 32 RGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 80


>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l
          (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 128

 Score = 22.8 bits (48), Expect = 5.1
 Identities = 5/23 (21%), Positives = 10/23 (43%)

Query: 47 GQGKTQQEAKTVAAHNAIEYLRL 69
             K+++ A+  AA   +    L
Sbjct: 72 LWDKSKKLAEQTAAIVCLRSQGL 94


>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score = 22.3 bits (47), Expect = 5.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 44 VCHGQGKTQQEAKTVAAHNAIEYLRLMTKS 73
             G+G++++EAK  AA  A+E L    K+
Sbjct: 57 FPEGEGRSKKEAKNAAAKLAVEILNKEKKA 86


>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
           O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 382

 Score = 22.7 bits (48), Expect = 5.7
 Identities = 6/27 (22%), Positives = 9/27 (33%)

Query: 14  ISTNGSNSIAFLHSTGQFQALVQLATY 40
              NG       H+      +V +A Y
Sbjct: 305 SFANGIFGCCCDHAPYDAMVMVNIAHY 331


>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 73

 Score = 22.2 bits (47), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 44 VCHGQGKTQQEAKTVAAHNAIEYL 67
          V  G G T+++AK  AA  A+   
Sbjct: 46 VFEGSGPTKKKAKLHAAEKALRSF 69


>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded
          RNA-dependent protein kinase activator A {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 73

 Score = 22.0 bits (46), Expect = 6.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 38 ATYPVAVCHGQGKTQQEAKTVAAHNAIEYLR 68
           T     C G+G +++ AK  AA  AI  L+
Sbjct: 39 VTVGDITCTGEGTSKKLAKHRAAEAAINILK 69


>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate
          isomerase (RpiA), catalytic domain {Haemophilus
          influenzae [TaxId: 727]}
          Length = 147

 Score = 22.4 bits (47), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 51 TQQEAKTVAAHNAIEYLR 68
           Q E K +AA  A++Y++
Sbjct: 2  NQLEMKKLAAQAALQYVK 19


>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score = 21.9 bits (46), Expect = 7.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 44 VCHGQGKTQQEAKTVAAHNAIEYL 67
              +G+++QEA+  AA  A++ L
Sbjct: 51 FPEAKGRSKQEARNAAAKLAVDIL 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.128    0.358 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 222,386
Number of extensions: 6810
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 19
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)