BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15721
(571 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PBI|A Chain A, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|C Chain C, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 424
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 194/336 (57%), Gaps = 6/336 (1%)
Query: 4 ENEVLEEVEGVQEFTIPYYWPWQHRQCP-DNVEYAIYLEKRSLRNKQRHGXXXXXXXXXX 62
+N +L+ + F PY+WP Q Q P ++ +YAIYL KR++ K++
Sbjct: 92 KNLILKPDSSLYRFQTPYFWPTQ--QWPAEDTDYAIYLAKRNI--KKKGILEEYEKENYD 147
Query: 63 XXXXXXXXXWDLVSMQAEEQVRLAKDRKKVDKIVADSQERAYWRVHRPPPGCTSSLEPIP 122
WD V MQA+EQ R K+R K D+ D QE+AYW VHR PPG + L+
Sbjct: 148 FLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGL 207
Query: 123 TCMRGTGHRKKRSVEDLKKEVDFLKSCLEKTRTKTSLVVESLIPFSETYAEYDAFFTTPN 182
+ KK++V ++KE+ + + L ++ K+S+ + ++ +SE ++ DA +
Sbjct: 208 DRVTNPNEVKKQTVTAVRKEIMYYQQALMRSTVKSSVSLGGIVKYSEQFSSNDAIMSGCL 267
Query: 183 PSNPWHNDDTTYWLLNSPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHEN 242
PSNPW DDT +W LN+ LVE+PT+ RV RWA + +LI+DP G F +L+KE+S EN
Sbjct: 268 PSNPWITDDTQFWDLNAKLVEIPTKMRVERWAFNFSELIRDPKGRQSFQYFLKKEFSGEN 327
Query: 243 IRFWLMVTELRRSAQSKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTY 302
+ FW +L+ QSK+ K +EI+ FL GA +NIDG+TM+ T L++P R+
Sbjct: 328 LGFWEACEDLKYGDQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITVKGLRHPHRYVL 387
Query: 303 DAAAEHIYTLLLKNDCYPRFIRSDHYKNLLQAGKQP 338
DAA HIY +L+K D Y R+++S YK +L +P
Sbjct: 388 DAAQTHIY-MLMKKDSYARYLKSPIYKEMLAKAIEP 422
>pdb|2A72|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
pdb|2A72|B Chain B, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
Length = 146
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 94/133 (70%), Gaps = 1/133 (0%)
Query: 205 PTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKV 264
P+++RV+RW +++ +KDP G +F +L E+S EN+RFWL V +L++ ++P++V
Sbjct: 5 PSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIKEVPSRV 64
Query: 265 KEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIR 324
+EI+ EFL GAP +N+D ++ ++T +K P R+T++ A EHIY L+K+D YPRFIR
Sbjct: 65 QEIWQEFLAPGAPSAINLDSKSYDKTTHNVKEPGRYTFEDAQEHIYK-LMKSDSYPRFIR 123
Query: 325 SDHYKNLLQAGKQ 337
S Y+ LLQA K+
Sbjct: 124 SSAYQELLQAKKK 136
>pdb|1FQJ|B Chain B, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|E Chain E, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|B Chain B, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|D Chain D, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 147
Score = 134 bits (336), Expect = 2e-31, Method: Composition-based stats.
Identities = 65/145 (44%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 194 YWLLNSPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELR 253
+W LN+ LV++PT+ RV RWA + +LI+DP G F +LRKE+S EN+ FW +L+
Sbjct: 2 FWDLNAKLVDIPTKMRVERWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLK 61
Query: 254 RSAQSKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLL 313
QSK+ K +EI+ FL GA +NIDG+TM+ T LK+P R+ DAA HIY +L
Sbjct: 62 YGDQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIY-ML 120
Query: 314 LKNDCYPRFIRSDHYKNLLQAGKQP 338
+K D Y R+++S YK +L +P
Sbjct: 121 MKKDSYARYLKSPIYKEMLAKAIEP 145
>pdb|2D9J|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signaling 7
Length = 139
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 88/126 (69%), Gaps = 1/126 (0%)
Query: 207 EKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKVKE 266
++RV+RW +++ +KDP G +F +L E+S EN+RFWL V +L++ ++P++V+E
Sbjct: 9 QQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIKEVPSRVQE 68
Query: 267 IFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSD 326
I+ EFL GAP +N+D ++ ++T +K P R+T++ A EHIY L+K+D YPRFIRS
Sbjct: 69 IWQEFLAPGAPSAINLDSKSYDKTTHNVKEPGRYTFEDAQEHIYK-LMKSDSYPRFIRSS 127
Query: 327 HYKNLL 332
Y+ LL
Sbjct: 128 AYQELL 133
>pdb|1FQI|A Chain A, Rgs9 Rgs Domain
Length = 147
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Query: 194 YWLLNSPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELR 253
+W LN+ LV++PT+ RV RWA + +LI+DP G F +LRKE+S EN+ FW +L+
Sbjct: 2 FWDLNAKLVDIPTKXRVERWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLK 61
Query: 254 RSAQSKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLL 313
QSK+ K +EI+ FL GA +NIDG+T + T LK+P R+ DAA HIY L
Sbjct: 62 YGDQSKVKEKAEEIYKLFLAPGARRWINIDGKTXDITVKGLKHPHRYVLDAAQTHIYX-L 120
Query: 314 LKNDCYPRFIRSDHYKNLLQAGKQP 338
K D Y R+++S YK L +P
Sbjct: 121 XKKDSYARYLKSPIYKEXLAKAIEP 145
>pdb|2ES0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs6
Length = 148
Score = 122 bits (306), Expect = 5e-28, Method: Composition-based stats.
Identities = 55/134 (41%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
Query: 204 VPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAK 263
+P+++RV+RW S ++++KD G +F +L E+S EN+RFWL V +L++ + +
Sbjct: 2 MPSQQRVKRWGFSFDEILKDQVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQDVAKR 61
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
V+EI+ EFL GAP +N+D + E T +K+ R+T++ A EHIY L+K+D Y RF+
Sbjct: 62 VEEIWQEFLAPGAPSAINLDSHSYEITSQNVKDGGRYTFEDAQEHIYK-LMKSDSYARFL 120
Query: 324 RSDHYKNLLQAGKQ 337
RS+ Y++LL A K+
Sbjct: 121 RSNAYQDLLLAKKK 134
>pdb|2BV1|A Chain A, Regulator Of G-Protein Signalling 1 (Human)
pdb|2BV1|B Chain B, Regulator Of G-Protein Signalling 1 (Human)
pdb|2GTP|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 145
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 81/130 (62%), Gaps = 1/130 (0%)
Query: 203 EVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPA 262
+V + V +W+ S+E L+ + TG F S+L+ E+S ENI FWL + +++ +P
Sbjct: 12 DVLSAAEVMQWSQSLEKLLANQTGQNVFGSFLKSEFSEENIEFWLACEDYKKTESDLLPC 71
Query: 263 KVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRF 322
K +EI+ F+ + A ++NID RT E T ++K P+ +D A + IYTL+ K D YPRF
Sbjct: 72 KAEEIYKAFVHSDAAKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYTLMEK-DSYPRF 130
Query: 323 IRSDHYKNLL 332
++SD Y NLL
Sbjct: 131 LKSDIYLNLL 140
>pdb|2IHD|A Chain A, Crystal Structure Of Human Regulator Of G-Protein
Signaling 8, Rgs8
Length = 155
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 83/137 (60%), Gaps = 3/137 (2%)
Query: 197 LNSPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRS- 255
S L + TE+ RWA S + L+ G+A F ++L+ E+S EN+ FWL E +++
Sbjct: 20 FQSMLKRLSTEE-ATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTR 78
Query: 256 AQSKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLK 315
+ +K+ +K IF+EF+ AP EVNID +T E T+ L+ PS +D A +++L+ K
Sbjct: 79 STAKLVSKAHRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEK 138
Query: 316 NDCYPRFIRSDHYKNLL 332
D YPRF+RS Y +LL
Sbjct: 139 -DSYPRFLRSKMYLDLL 154
>pdb|2ODE|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
Length = 141
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 199 SPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRS-AQ 257
S L + TE+ RWA S + L+ G+A F ++L+ E+S EN+ FWL E +++ +
Sbjct: 1 SMLKRLSTEE-ATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRST 59
Query: 258 SKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKND 317
+K+ +K IF+EF+ AP EVNID +T E T+ L+ PS +D A +++L+ K D
Sbjct: 60 AKLVSKAHRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEK-D 118
Query: 318 CYPRFIRSDHYKNLL 332
YPRF+RS Y +LL
Sbjct: 119 SYPRFLRSKMYLDLL 133
>pdb|2OJ4|A Chain A, Crystal Structure Of Rgs3 Rgs Domain
Length = 127
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 2/122 (1%)
Query: 212 RWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-SAQSKIPAKVKEIFDE 270
+W S+E L+ GLA F ++LR E+S EN+ FWL + ++ +QSK+ +K K+IF E
Sbjct: 6 KWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFAE 65
Query: 271 FLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
++ A EVN+D T E T+ L++ +R +D A + I+ L+ K D YPRF+RSD Y +
Sbjct: 66 YIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEK-DSYPRFLRSDLYLD 124
Query: 331 LL 332
L+
Sbjct: 125 LI 126
>pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|H Chain H, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
Length = 205
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
Query: 206 TEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-SAQSKIPAKV 264
+++ V++WA S+E+LI GLA F ++L+ EYS ENI FW+ E ++ + SK+ K
Sbjct: 52 SQEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKA 111
Query: 265 KEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIR 324
K+I++EF+ A EVN+D T E T + P+ +D A + I+ L+ K D Y RF++
Sbjct: 112 KKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEK-DSYRRFLK 170
Query: 325 SDHYKNL 331
S Y +L
Sbjct: 171 SRFYLDL 177
>pdb|1EZT|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
pdb|1EZY|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
Length = 166
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
Query: 206 TEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-SAQSKIPAKV 264
+++ V++WA S+E+LI GLA F ++L+ EYS ENI FW+ E ++ + SK+ K
Sbjct: 6 SQEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKA 65
Query: 265 KEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIR 324
K+I++EF+ A EVN+D T E T + P+ +D A + I+ L+ K D Y RF++
Sbjct: 66 KKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEK-DSYRRFLK 124
Query: 325 SDHYKNL 331
S Y +L
Sbjct: 125 SRFYLDL 131
>pdb|2CRP|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signalling 5 (Rgs 5)
Length = 150
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 78/122 (63%), Gaps = 2/122 (1%)
Query: 212 RWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-SAQSKIPAKVKEIFDE 270
+W S++ L+++ GLA F S+L+ E+S EN+ FW+ + ++ + +K+ K K+I++E
Sbjct: 24 QWRDSLDKLLQNNYGLASFKSFLKSEFSEENLEFWIACEDYKKIKSPAKMAEKAKQIYEE 83
Query: 271 FLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
F++ AP EVNID T + T L PS ++D A + I+ L+ K D PRF+RS+ Y+
Sbjct: 84 FIQTEAPKEVNIDHFTKDITMKNLVEPSLSSFDMAQKRIHALMEK-DSLPRFVRSEFYQE 142
Query: 331 LL 332
L+
Sbjct: 143 LI 144
>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein): A
Regulator Of G Protein Signaling
Length = 152
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 210 VRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAKVKEIF 268
V+ WA S + L+ P G + F ++LR EYS EN+ FWL EL+ A Q + K + I+
Sbjct: 17 VQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIY 76
Query: 269 DEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHY 328
++++ +P EV++D R E +++ PS T+D A IYT L+ D YPRF+ S Y
Sbjct: 77 EDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYT-LMHRDSYPRFLSSPTY 135
Query: 329 KNLL 332
+ LL
Sbjct: 136 RALL 139
>pdb|2JM5|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
pdb|2OWI|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
Length = 151
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 212 RWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRS-AQSKIPAKVKEIFDE 270
+W S + L+ GL FT +L+ E+S ENI FW+ + ++S +I K K I+++
Sbjct: 10 KWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEK 69
Query: 271 FLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
F++ AP EVN+D T E + P+ ++DAA +Y L++ D Y RF++SD Y +
Sbjct: 70 FIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQ-LMEQDSYTRFLKSDIYLD 128
Query: 331 LLQAGKQPCTKKR 343
L++ Q T R
Sbjct: 129 LMEGRPQRPTNLR 141
>pdb|2DLV|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of
G-Protein Signaling 18
Length = 140
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 212 RWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRS-AQSKIPAKVKEIFDE 270
+W S + L+ GL FT +L+ E+S ENI FW+ + ++S +I K K I+++
Sbjct: 14 KWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEK 73
Query: 271 FLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
F++ AP EVN+D T E + P+ ++DAA +Y L++ D Y RF++SD Y +
Sbjct: 74 FIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQ-LMEQDSYTRFLKSDIYLD 132
Query: 331 LL 332
L+
Sbjct: 133 LM 134
>pdb|3C7L|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7L|B Chain B, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 137
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 210 VRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-SAQSKIPAKVKEIF 268
V W S + L+ G+A F ++L+ E+S EN+ FWL E ++ + +K+ ++ IF
Sbjct: 15 VLGWRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIF 74
Query: 269 DEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHY 328
DE++++ AP EVNID T E T+T L+ + +D A TL+ K D YPRF++S Y
Sbjct: 75 DEYIRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEK-DSYPRFLKSPAY 133
Query: 329 KNL 331
++L
Sbjct: 134 RDL 136
>pdb|3C7K|B Chain B, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|D Chain D, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 129
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 210 VRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-SAQSKIPAKVKEIF 268
V W S + L+ G+A F ++L+ E+S EN+ FWL E ++ + +K+ ++ IF
Sbjct: 7 VLGWRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIF 66
Query: 269 DEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHY 328
DE++++ AP EVNID T E T+T L+ + +D A TL+ K D YPRF++S Y
Sbjct: 67 DEYIRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEK-DSYPRFLKSPAY 125
Query: 329 KNL 331
++L
Sbjct: 126 RDL 128
>pdb|2V4Z|B Chain B, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 142
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 79/128 (61%), Gaps = 2/128 (1%)
Query: 205 PTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQ-SKIPAK 263
P+ + + W+ + ++L+ GLA F ++L+ E+S ENI FWL + +++ K+ +K
Sbjct: 5 PSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFSEENIEFWLACEDFKKTKSPQKLSSK 64
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
++I+ +F++ AP E+NID +T ++ + + A + +Y+ L++ND YPRF+
Sbjct: 65 ARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYS-LMENDSYPRFL 123
Query: 324 RSDHYKNL 331
+S+ Y++L
Sbjct: 124 KSEFYQDL 131
>pdb|2BT2|A Chain A, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|B Chain B, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|C Chain C, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|D Chain D, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|E Chain E, Structure Of The Regulator Of G-Protein Signaling 16
Length = 161
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 210 VRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELR--RSAQSKIPAKVKEI 267
V W S + L+ G+A F ++L+ E+S EN+ FWL E + RSA +K+ ++ +I
Sbjct: 30 VLGWRESFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSA-TKLASRAHQI 88
Query: 268 FDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDH 327
F+EF+ + AP EVNID T E T+ L+ + +DAA TL+ K D YPRF++S
Sbjct: 89 FEEFICSEAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRTLMEK-DSYPRFLKSPA 147
Query: 328 YKNL 331
Y++L
Sbjct: 148 YRDL 151
>pdb|2IK8|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 140
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 210 VRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELR--RSAQSKIPAKVKEI 267
V W S + L+ G+A F ++L+ E+S EN+ FWL E + RSA +K+ ++ +I
Sbjct: 9 VLGWRESFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSA-TKLASRAHQI 67
Query: 268 FDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDH 327
F+EF+ + AP EVNID T E T+ L+ + +DAA TL+ K D YPRF++S
Sbjct: 68 FEEFICSEAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRTLMEK-DSYPRFLKSPA 126
Query: 328 YKNL 331
Y++L
Sbjct: 127 YRDL 130
>pdb|1ZV4|X Chain X, Structure Of The Regulator Of G-Protein Signaling 17
(Rgsz2)
Length = 158
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 205 PTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSK-IPAK 263
PT + V W+ + + ++K P G F +LR EYS EN+ FWL +L++ K I K
Sbjct: 25 PTAEEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEK 84
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
+ I+++++ +P EV++D R E L +P+ Y+ A IYTL+ + D +PRF+
Sbjct: 85 ARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHR-DSFPRFL 143
Query: 324 RSDHYKNLLQA 334
S YK+ +++
Sbjct: 144 NSQIYKSFVES 154
>pdb|2DLR|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of
G-Protein Signaling 10
Length = 149
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Query: 208 KRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-SAQSKIPAKVKE 266
K +WA S+E+L++DP G+ F +L+KE+S EN+ FWL + ++ ++++ K KE
Sbjct: 10 KSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKE 69
Query: 267 IFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSD 326
I+ FL + A +VN++G++ + L+ P + + I+ L+K D Y RF++SD
Sbjct: 70 IYMTFLSSKASSQVNVEGQS-RLNEKILEEPHPLMFQKLQDQIFN-LMKYDSYSRFLKSD 127
Query: 327 HY 328
+
Sbjct: 128 LF 129
>pdb|4EKC|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|D Chain D, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 137
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 205 PTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQ-SKIPAK 263
P+ + + W+ + ++L+ GLA F ++L+ E+ ENI FWL + +++ K+ +K
Sbjct: 6 PSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSK 65
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
++I+ +F++ AP E+NID +T ++ + + A + +Y+ L++N+ YPRF+
Sbjct: 66 ARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYS-LMENNSYPRFL 124
Query: 324 RSDHYKNL 331
S+ Y++L
Sbjct: 125 ESEFYQDL 132
>pdb|2I59|A Chain A, Solution Structure Of Rgs10
Length = 138
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Query: 208 KRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAKVKE 266
K +WA S+E+L++DP G+ F +L+KE+S EN+ FWL + ++ ++++ K KE
Sbjct: 6 KSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKE 65
Query: 267 IFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSD 326
I+ FL + A +VN++G++ + L+ P + + I+ L+K D Y RF++SD
Sbjct: 66 IYMTFLSSKASSQVNVEGQS-RLNEKILEEPHPLMFQKLQDQIFN-LMKYDSYSRFLKSD 123
Query: 327 HY 328
+
Sbjct: 124 LF 125
>pdb|2AF0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs2
Length = 146
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 205 PTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQ-SKIPAK 263
P+ + + W+ + ++L+ GLA F ++L+ E+ ENI FWL + +++ K+ +K
Sbjct: 15 PSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSK 74
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
++I+ +F++ AP E+NID +T ++ + + A + +Y+ L++N+ YPRF+
Sbjct: 75 ARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYS-LMENNSYPRFL 133
Query: 324 RSDHYKNL 331
S+ Y++L
Sbjct: 134 ESEFYQDL 141
>pdb|2IHB|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 153
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 212 RWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAKVKEIFDE 270
+WA S+E+L++DP G+ F +L+KE+S EN+ FWL + ++ ++++ K KEI+
Sbjct: 30 KWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMT 89
Query: 271 FLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHY 328
FL + A +VN++G++ + L+ P + + I+ L+K D Y RF++SD +
Sbjct: 90 FLSSKASSQVNVEGQS-RLNEKILEEPHPLMFQKLQDQIFN-LMKYDSYSRFLKSDLF 145
>pdb|2JNU|A Chain A, Solution Structure Of The Rgs Domain Of Human Rgs14
Length = 154
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 207 EKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR---SAQSKIPAK 263
E+ V WALS E L++DP GLA FT +L+KE+S EN+ FW ++ S ++ +
Sbjct: 5 EQPVASWALSFERLLQDPLGLAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQLAQE 64
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
+ I+ EFL + A VNID R + L P + A I+ L+K D Y RF+
Sbjct: 65 ARNIYQEFLSSQALSPVNID-RQAWLGEEVLAEPRPDMFRAQQLQIFN-LMKFDSYARFV 122
Query: 324 RSDHYKNLLQA 334
+S Y+ L A
Sbjct: 123 KSPLYRECLLA 133
>pdb|2EBZ|A Chain A, Solution Structure Of The Rgs Domain From Human Regulator
Of G-Protein Signaling 12 (Rgs12)
Length = 155
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 207 EKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR---SAQSKIPAK 263
E+RV WA+S E L++DP G+ F+ +LRKE+S ENI FW + ++ +
Sbjct: 9 ERRVASWAVSFERLLQDPVGVRYFSDFLRKEFSEENILFWQACEYFNHVPAHDKKELSYR 68
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
+EIF +FL + A VNID + + L+ P + I+ L+K D Y RF+
Sbjct: 69 AREIFSKFLCSKATTPVNIDSQA-QLADDVLRAPHPDMFKEQQLQIFN-LMKFDSYTRFL 126
Query: 324 RSDHYKNLLQA 334
+S Y+ + A
Sbjct: 127 KSPLYQECILA 137
>pdb|1DK8|A Chain A, Crystal Structure Of The Rgs-Homologous Domain Of Axin
Length = 147
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 21/140 (15%)
Query: 212 RWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-----SAQSKIPAKVKE 266
+WA S+ L+ D G++ F ++L++E + + FW T R+ S + K +
Sbjct: 11 KWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARA 70
Query: 267 IFDEFL---------KAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKND 317
I+ +++ + + I G M+ +L +P+ F D A I + +N
Sbjct: 71 IYRKYILDNNGIVSRQTKPATKSFIKGCIMK----QLIDPAMF--DQAQTEIQATMEEN- 123
Query: 318 CYPRFIRSDHYKNLLQAGKQ 337
YP F++SD Y + G +
Sbjct: 124 TYPSFLKSDIYLEYTRTGSE 143
>pdb|1EMU|A Chain A, Structure Of The Axin Rgs-Homologous Domain In Complex
With A Samp Repeat From Apc
Length = 132
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 212 RWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-----SAQSKIPAKVKE 266
+WA S+ L+ D G++ F ++L++E + + FW T R+ S + K +
Sbjct: 5 KWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARA 64
Query: 267 IFDEFL---------KAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKND 317
I+ +++ + + I G M+ +L +P+ F D A I + +N
Sbjct: 65 IYRKYILDNNGIVSRQTKPATKSFIKGCIMK----QLIDPAMF--DQAQTEIQATMEEN- 117
Query: 318 CYPRFIRSDHY 328
YP F++SD Y
Sbjct: 118 TYPSFLKSDIY 128
>pdb|3DMA|A Chain A, Crystal Structure Of An Exopolyphosphatase-Related Protein
From Bacteroides Fragilis. Northeast Structural Genomics
Target Bfr192
Length = 343
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 312 LLLKNDCYPRFIRSDHYKNLLQ-----AGKQPCTKKRFPFPFGGGQKKKSS 357
L +KN C+ F+R D K ++ GK PC + F GGG S
Sbjct: 266 LSIKNVCFSCFLREDTEKKXIKISLRSVGKFPCNRLAAEFFNGGGHLNASG 316
>pdb|2NWQ|A Chain A, Short Chain Dehydrogenase From Pseudomonas Aeruginosa
pdb|2NWQ|B Chain B, Short Chain Dehydrogenase From Pseudomonas Aeruginosa
pdb|2NWQ|C Chain C, Short Chain Dehydrogenase From Pseudomonas Aeruginosa
pdb|2NWQ|D Chain D, Short Chain Dehydrogenase From Pseudomonas Aeruginosa
Length = 272
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 163 SLIPFSETYAEYDAFFTTPNPSNPWHNDDTTYWLLNSP 200
SL+ F A YD + +P P +T +W+ N P
Sbjct: 209 SLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIXNQP 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,425,341
Number of Sequences: 62578
Number of extensions: 577049
Number of successful extensions: 1119
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1028
Number of HSP's gapped (non-prelim): 37
length of query: 571
length of database: 14,973,337
effective HSP length: 104
effective length of query: 467
effective length of database: 8,465,225
effective search space: 3953260075
effective search space used: 3953260075
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)