Query psy15721
Match_columns 571
No_of_seqs 281 out of 1030
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 19:45:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3589|consensus 100.0 1.1E-33 2.4E-38 277.5 17.2 185 149-337 16-205 (221)
2 smart00315 RGS Regulator of G 99.9 7.4E-25 1.6E-29 189.1 11.3 115 216-331 1-118 (118)
3 PF00615 RGS: Regulator of G p 99.9 7.3E-23 1.6E-27 174.6 10.7 115 216-331 1-118 (118)
4 smart00224 GGL G protein gamma 99.7 4.7E-17 1E-21 132.7 6.2 62 136-197 1-63 (63)
5 cd00068 GGL G protein gamma su 99.6 6.2E-16 1.3E-20 123.9 6.1 55 137-191 2-57 (57)
6 PF00631 G-gamma: GGL domain; 99.3 2E-12 4.3E-17 106.5 3.5 61 134-196 2-67 (68)
7 KOG3590|consensus 99.2 2.3E-11 5.1E-16 129.0 7.2 123 211-334 109-309 (602)
8 KOG4119|consensus 99.1 1.9E-10 4E-15 96.3 5.3 57 134-190 7-64 (71)
9 KOG3590|consensus 98.9 2.5E-09 5.4E-14 113.9 8.6 121 215-336 316-447 (602)
10 KOG0986|consensus 98.5 6.3E-07 1.4E-11 97.5 10.7 130 214-344 50-187 (591)
11 PF09128 RGS-like: Regulator o 97.9 5.1E-05 1.1E-09 74.6 9.9 98 215-312 6-108 (188)
12 KOG0063|consensus 41.2 6.5 0.00014 44.2 -1.0 95 225-323 495-592 (592)
13 PRK10803 tol-pal system protei 25.5 5.9E+02 0.013 26.4 10.2 137 133-277 60-214 (263)
14 PF04868 PDE6_gamma: Retinal c 23.9 27 0.00059 30.5 0.1 13 542-554 59-71 (83)
15 PF03942 DTW: DTW domain; Int 21.0 35 0.00077 33.4 0.3 51 68-122 120-171 (203)
No 1
>KOG3589|consensus
Probab=100.00 E-value=1.1e-33 Score=277.46 Aligned_cols=185 Identities=35% Similarity=0.578 Sum_probs=172.7
Q ss_pred hhcccccchhHHHHhHHHHHhhhccCCCcccCCCCCCCCCcCCcccccccCCCCCCCCHHHHHHhhhhHHHHhcChhhHH
Q psy15721 149 CLEKTRTKTSLVVESLIPFSETYAEYDAFFTTPNPSNPWHNDDTTYWLLNSPLVEVPTEKRVRRWALSIEDLIKDPTGLA 228 (571)
Q Consensus 149 ~L~r~RiKvSka~E~Li~Yceq~~~yDPlLsgp~psNPWisDD~~~W~~n~~~~~~PT~~rV~rWs~SLdeLL~DP~Gr~ 228 (571)
.+.++.+++++++.....+..++..++++++.+ .|||..+....|....+ ...|+.++|.+|+.+|+.||.|+.|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~e~~~~w~~sf~~L~~~~~G~~ 92 (221)
T KOG3589|consen 16 PVPRSSLKILKEAITRESTLTRLARNDRRISNP--GAPSTLKSLASGKGLEP-LELPSREEVESWAKSFEKLLADEAGRA 92 (221)
T ss_pred cccccHHHHHHHHHHhHHHhhccccccccccCC--CCCCCCCchhhhccccc-ccCCCHHHHHHHHHhHHHHhhChhhHH
Confidence 456777888899999999999999999988876 89999999999977666 789999999999999999999999999
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhhhccc---hhhHHHHHHHHHHhcCCCCCccCCCCHHHHHHHHHHhcCCC--HHHHH
Q psy15721 229 EFTSYLRKEYSHENIRFWLMVTELRRSAQ---SKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPS--RFTYD 303 (571)
Q Consensus 229 lFreFLekEfS~ENL~FWlaVEefKk~~~---s~~~~~Ak~IY~kFLapgAP~EVNIDsktre~I~e~Lk~P~--r~lFD 303 (571)
+|..||++|||+|||.||++||+|++... .++..+|+.||++||+++||++||||+.+|+.|..+|..|. +++|+
T Consensus 93 ~F~~fLk~e~Seeni~FW~ace~~k~~~~~~~~~~~~~a~~i~~~f~~~~ap~~vn~d~~tre~~~~~l~~p~~~~~~f~ 172 (221)
T KOG3589|consen 93 VFAEFLKSEFSEENLEFWLACEEFKKRRSEKSTKMSEKAKEIYEEFSAPAAPKEVNLDSKTRELTNRNLSEPSGQRTCFD 172 (221)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHhCcCchhhhhhHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHhcCCCCCCCcHH
Confidence 99999999999999999999999999986 57899999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHccccCccccccCCHHHHHHHHhcCC
Q psy15721 304 AAAEHIYTLLLKNDCYPRFIRSDHYKNLLQAGKQ 337 (571)
Q Consensus 304 eAQ~~Vy~lLMKkDSYPRFLrS~~YkelL~~~~q 337 (571)
.||.+||. ||++|+|||||+|++|++++.....
T Consensus 173 ~Aq~~i~~-lm~~dsy~RFl~s~~y~~l~~~~~~ 205 (221)
T KOG3589|consen 173 EAQKHVYT-LMEKDSYPRFLRSPLYLDLLKQPKK 205 (221)
T ss_pred HHHHHHHH-hcccCCCccccCCHHHHHHHHHhhc
Confidence 99999997 7999999999999999999988543
No 2
>smart00315 RGS Regulator of G protein signalling domain. RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.
Probab=99.92 E-value=7.4e-25 Score=189.06 Aligned_cols=115 Identities=40% Similarity=0.761 Sum_probs=109.2
Q ss_pred hHHHHhcChhhHHHHHHHHHhhccchhHHHHHHHHHhhhccc-hhhHHHHHHHHHHhcCCCCCccCCCCHHHHHHHHHHh
Q psy15721 216 SIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQ-SKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTEL 294 (571)
Q Consensus 216 SLdeLL~DP~Gr~lFreFLekEfS~ENL~FWlaVEefKk~~~-s~~~~~Ak~IY~kFLapgAP~EVNIDsktre~I~e~L 294 (571)
+|++||.||.|+.+|++||++++|.|||.||++|++|+.... ..+...|+.||++||.++||.+|||+..+++.|.+.+
T Consensus 1 ~l~~il~d~~~~~~F~~fl~~~~~~e~l~F~~~v~~~~~~~~~~~~~~~a~~I~~~yi~~~s~~~~ni~~~~~~~i~~~~ 80 (118)
T smart00315 1 SLESLLSDPIGRLLFREFLESEFSEENLEFWLAVEEFKKAEDDEERIAKAREIYDKFLSPNAPKEVNLDSDLREKIEENL 80 (118)
T ss_pred CHHHHhcChHHHHHHHHHHHHhcchHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCceeCCHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999987 7889999999999999999999999999999999998
Q ss_pred cC--CCHHHHHHHHHHHHHHccccCccccccCCHHHHHH
Q psy15721 295 KN--PSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKNL 331 (571)
Q Consensus 295 k~--P~r~lFDeAQ~~Vy~lLMKkDSYPRFLrS~~Ykel 331 (571)
.. |.+++|+.||.+|+. +|+.|+||+|+.|+.|.++
T Consensus 81 ~~~~~~~~~F~~~~~~v~~-~l~~~~~~~F~~S~~y~~~ 118 (118)
T smart00315 81 ESEEPPPDLFDEAQEEVYE-LLEKDSFPRFLESDYYLRF 118 (118)
T ss_pred hcCCCChHHHHHHHHHHHH-HHhcCchHHHhCCHhhccC
Confidence 76 889999999999997 4999999999999999764
No 3
>PF00615 RGS: Regulator of G protein signaling domain; InterPro: IPR000342 RGS (Regulator of G Protein Signalling) proteins are multi-functional, GTPase-accelerating proteins that promote GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. Upon activation by GPCRs, heterotrimeric G proteins exchange GDP for GTP, are released from the receptor, and dissociate into free, active GTP-bound alpha subunit and beta-gamma dimer, both of which activate downstream effectors. The response is terminated upon GTP hydrolysis by the alpha subunit (IPR001019 from INTERPRO), which can then bind the beta-gamma dimer (IPR001632 from INTERPRO, IPR001770 from INTERPRO) and the receptor. RGS proteins markedly reduce the lifespan of GTP-bound alpha subunits by stabilising the G protein transition state. All RGS proteins contain an 'RGS-box' (or RGS domain), which is required for activity. Some small RGS proteins such as RGS1 and RGS4 are comprised of little more than an RGS domain, while others also contain additional domains that confer further functionality []. RGS domains can be found in conjunction with a variety of domains, including: DEP for membrane targeting (IPR000591 from INTERPRO), PDZ for binding to GPCRs (IPR001478 from INTERPRO), PTB for phosphotyrosine-binding (IPR006020 from INTERPRO), RBD for Ras-binding (IPR003116 from INTERPRO), GoLoco for guanine nucleotide inhibitor activity (IPR003109 from INTERPRO), PX for phosphatidylinositol-binding (IPR001683 from INTERPRO), PXA that is associated with PX (IPR003114 from INTERPRO), PH for stimulating guanine nucleotide exchange (IPR001849 from INTERPRO), and GGL (G protein gamma subunit-like) for binding G protein beta subunits (IPR001770 from INTERPRO) []. Those RGS proteins that contain GGL domains can interact with G protein beta subunits to form novel dimers that prevent G protein gamma subunit binding and G protein alpha subunit association, thereby preventing heterotrimer formation.; GO: 0004871 signal transducer activity; PDB: 2BCJ_A 3PSC_A 3PVU_A 1YM7_B 3PVW_A 1OMW_A 2EBZ_A 2BV1_B 2GTP_D 1CMZ_A ....
Probab=99.89 E-value=7.3e-23 Score=174.64 Aligned_cols=115 Identities=36% Similarity=0.750 Sum_probs=108.2
Q ss_pred hHHHHhcChhhHHHHHHHHHhhccchhHHHHHHHHHhhhcc-chhhHHHHHHHHHHhcCCCCCccCCCCHHHHHHHHHHh
Q psy15721 216 SIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTEL 294 (571)
Q Consensus 216 SLdeLL~DP~Gr~lFreFLekEfS~ENL~FWlaVEefKk~~-~s~~~~~Ak~IY~kFLapgAP~EVNIDsktre~I~e~L 294 (571)
||++||.||.++.+|++||+++++.+||.||++|+.|+... ...+...|+.||++||+++|+.+|||+..+++.+.+.+
T Consensus 1 s~~~il~~~~~~~~F~~Fl~~~~~~~~l~F~~~v~~~~~~~~~~~~~~~a~~I~~~fi~~~s~~~l~i~~~~~~~~~~~~ 80 (118)
T PF00615_consen 1 SFEKILEDPEGLELFKEFLEKENCEENLQFWLEVEEFKSSESEEQRKKLAQQIYNKFISPGSPNELNIPSKIRKEVQDAL 80 (118)
T ss_dssp -HHHHHHSHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHHHTSTTSTTCCSSTHHHHHHHHHHH
T ss_pred CHHHHHCChHHHHHHHHHHhHCCCHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999994 56778889999999999999999999999999999998
Q ss_pred cC--CCHHHHHHHHHHHHHHccccCccccccCCHHHHHH
Q psy15721 295 KN--PSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKNL 331 (571)
Q Consensus 295 k~--P~r~lFDeAQ~~Vy~lLMKkDSYPRFLrS~~Ykel 331 (571)
.. |.+++|+.||.+|+.. |+.+.||+|++|+.|++|
T Consensus 81 ~~~~~~~~~f~~a~~~v~~~-L~~~~~~~F~~S~~y~~~ 118 (118)
T PF00615_consen 81 ENAPPSPDLFDEAQEEVYEM-LEEDWFPKFLKSEEYKQF 118 (118)
T ss_dssp TSTSTTTTTTHHHHHHHHHH-HHHTHHHHHHTSHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHH-HhhchHHhHccCHhhhcC
Confidence 87 8899999999999985 999999999999999986
No 4
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=99.68 E-value=4.7e-17 Score=132.68 Aligned_cols=62 Identities=40% Similarity=0.689 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhhcccccchhHHHHhHHHHHhhhccCCCcccCCCCC-CCCCcCCcccccc
Q psy15721 136 VEDLKKEVDFLKSCLEKTRTKTSLVVESLIPFSETYAEYDAFFTTPNPS-NPWHNDDTTYWLL 197 (571)
Q Consensus 136 ~d~lrreIE~Lr~~L~r~RiKvSka~E~Li~Yceq~~~yDPlLsgp~ps-NPWisDD~~~W~~ 197 (571)
+++++++|++||.+|+++|||||+|+++|++||+++..+||||.|+.++ |||++|+.++|.+
T Consensus 1 ~~~~~~~ve~Lr~el~~~RikvS~a~~~li~y~e~~~~~DP~l~g~~~~~NP~~~dk~~c~~l 63 (63)
T smart00224 1 KDQLRKEVEQLRKELSRERIKVSKAAEELLAYCEQHAEEDPLLTGPPPSKNPFIEDKTSCWIL 63 (63)
T ss_pred ChHHHHHHHHHHHHHCCceehHHHHHHHHHHHHHcCCCCCCCcCCCCCCCCCCCCCCCCcCcC
Confidence 3689999999999999999999999999999999999999999997777 9999999999964
No 5
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=99.62 E-value=6.2e-16 Score=123.86 Aligned_cols=55 Identities=40% Similarity=0.662 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhcccccchhHHHHhHHHHHhhhccCCCcccCCC-CCCCCCcCC
Q psy15721 137 EDLKKEVDFLKSCLEKTRTKTSLVVESLIPFSETYAEYDAFFTTPN-PSNPWHNDD 191 (571)
Q Consensus 137 d~lrreIE~Lr~~L~r~RiKvSka~E~Li~Yceq~~~yDPlLsgp~-psNPWisDD 191 (571)
++++++|++||.+|+++|||||+|+++|++||+++..+||||+|+. ++|||++|+
T Consensus 2 ~~~~~~veqLr~el~~~RikvS~a~~~l~~y~e~~~~~Dpll~g~~~~~NP~~~~~ 57 (57)
T cd00068 2 DQLKKEVEQLRKELSRERLKVSKAAAELLKYCEQNAENDPLLTGPPSPSNPWIEKK 57 (57)
T ss_pred HHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCc
Confidence 6899999999999999999999999999999999999999999966 899999874
No 6
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=99.28 E-value=2e-12 Score=106.54 Aligned_cols=61 Identities=34% Similarity=0.698 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHhhcccccchhHHHHhHHHHHhhhccCCCcccCC-CC----CCCCCcCCccccc
Q psy15721 134 RSVEDLKKEVDFLKSCLEKTRTKTSLVVESLIPFSETYAEYDAFFTTP-NP----SNPWHNDDTTYWL 196 (571)
Q Consensus 134 ~s~d~lrreIE~Lr~~L~r~RiKvSka~E~Li~Yceq~~~yDPlLsgp-~p----sNPWisDD~~~W~ 196 (571)
...+.++++|++||.+|.++|+|+|+|+++|++||+ ..+||||+++ .+ .|||++++...|.
T Consensus 2 ~~~~~l~~ei~~L~~el~~~r~~vS~a~~~li~y~~--~~~DPll~~~~~p~~~~~NPw~~~~~~C~i 67 (68)
T PF00631_consen 2 QEKDQLKREIEQLRQELERERIKVSKACKELIEYCE--STPDPLLPGPWGPPSSSSNPWIEKDGCCWI 67 (68)
T ss_dssp THHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHH--GTC-HHHHT--SS--GGGSTTCC-STHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccceeHHHHHHHHHHHhc--CCCCceeCCCCCCCCccCCCCcCCCCCeee
Confidence 346789999999999999999999999999999999 8899999997 34 4999999777775
No 7
>KOG3590|consensus
Probab=99.20 E-value=2.3e-11 Score=129.01 Aligned_cols=123 Identities=17% Similarity=0.353 Sum_probs=105.6
Q ss_pred HHhhhhHHHHhcChhhHHHHHHHHHhhccchhHHHHHHHHHhhhccchh---------------------------h---
Q psy15721 211 RRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSK---------------------------I--- 260 (571)
Q Consensus 211 ~rWs~SLdeLL~DP~Gr~lFreFLekEfS~ENL~FWlaVEefKk~~~s~---------------------------~--- 260 (571)
.+-+++|+.||.|+..+.+|.+||.....-..|.||+++|.||.....+ +
T Consensus 109 s~Ls~~L~~il~D~~~LSYFiQYLD~r~~L~LIKFwl~~E~FKs~~~~Qi~aep~~p~~k~~~~~s~~~ddk~aqELKt~ 188 (602)
T KOG3590|consen 109 SSLSKTLEQVLHDTIVLSYFIQYLDLRRMLHLIKFWLEAESFKSTTWSQIRAEPVSPSKKHETTASFLTDDKRAQELKTH 188 (602)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHHHhHHHHHHHHHhhhhhhHHHHHHHhhccCCCchhhcccccccccchhhHHHHhh
Confidence 3458899999999999999999999999999999999999999864110 0
Q ss_pred --------------------------------------------HHHHHHHHHHhcCCCCCccCCCCHHHHHHHHHHhc-
Q psy15721 261 --------------------------------------------PAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELK- 295 (571)
Q Consensus 261 --------------------------------------------~~~Ak~IY~kFLapgAP~EVNIDsktre~I~e~Lk- 295 (571)
-..|-.||.+||.++|..+|.|+..++..|...+.
T Consensus 189 ~~~s~r~~~~~~~~~~i~~et~~~~~~~~~~s~~~~aspL~~~s~~dai~~~~ky~~~~a~~~i~~~~~~~~~i~~~~cg 268 (602)
T KOG3590|consen 189 SEHSLRLEMARAGTHQVSMETQESSSTLTVASRNSPASPLKELSGKDAVNTFTKYISPDAAKPIPITEAMRNDIIARICG 268 (602)
T ss_pred hhhhhcccccccccchhhhhhhhhhccccccccccccchhhhhcchhhhhhhhhhcccccccCccchHHHHhhHHHHHhc
Confidence 12467799999999999999999999999988774
Q ss_pred ---CCCHHHHHHHHHHHHHHccccCccccccCCHHHHHHHHh
Q psy15721 296 ---NPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKNLLQA 334 (571)
Q Consensus 296 ---~P~r~lFDeAQ~~Vy~lLMKkDSYPRFLrS~~YkelL~~ 334 (571)
...+.|||+||.-|+.. |+.|.|..|++|..|..+.-+
T Consensus 269 ~d~~i~~~CFDEAq~~v~~~-~e~Dhf~~fl~s~h~~~y~LE 309 (602)
T KOG3590|consen 269 EDGQVDPNCFDEAQSIVFSA-MEQDHFSEFLRSHHFCKYQLE 309 (602)
T ss_pred cCCCCCchHHHHHHHHHHHH-HHHHHHHHHHHhccccceeeE
Confidence 34678999999999996 999999999999998775433
No 8
>KOG4119|consensus
Probab=99.06 E-value=1.9e-10 Score=96.26 Aligned_cols=57 Identities=30% Similarity=0.412 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHHhhcccccchhHHHHhHHHHHhhhccCCCcccC-CCCCCCCCcC
Q psy15721 134 RSVEDLKKEVDFLKSCLEKTRTKTSLVVESLIPFSETYAEYDAFFTT-PNPSNPWHND 190 (571)
Q Consensus 134 ~s~d~lrreIE~Lr~~L~r~RiKvSka~E~Li~Yceq~~~yDPlLsg-p~psNPWisD 190 (571)
..+.+++++|+|||.++...|+|||+++..|+.||++++..|||+.| +...|||.+.
T Consensus 7 ~~~~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~E~~~~~DpLl~gv~~~~NPf~e~ 64 (71)
T KOG4119|consen 7 SKKPQMKKEVEQLKLEANIERIKVSKAAAELLEYCETHATEDPLLEGVPEKENPFREK 64 (71)
T ss_pred cchHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhcCccCccccCCccccCCCccc
Confidence 34789999999999999999999999999999999999999999999 8889999983
No 9
>KOG3590|consensus
Probab=98.92 E-value=2.5e-09 Score=113.88 Aligned_cols=121 Identities=18% Similarity=0.367 Sum_probs=109.2
Q ss_pred hhHHHHhcChhhHHHHHHHHHhhccchhHHHHHHHHHhhhccc--------hhhHHHHHHHHHHhcCCCCCccCCCCHHH
Q psy15721 215 LSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQ--------SKIPAKVKEIFDEFLKAGAPCEVNIDGRT 286 (571)
Q Consensus 215 ~SLdeLL~DP~Gr~lFreFLekEfS~ENL~FWlaVEefKk~~~--------s~~~~~Ak~IY~kFLapgAP~EVNIDskt 286 (571)
.+|.+||.....+-+|.+||+++-.-+.|.||++|..|++... .+....|.-||++|++-.|.+.|-++..+
T Consensus 316 v~laDiL~~e~aLfyF~Ey~e~~~~~~~lqFwl~adnF~~~la~~E~~~d~~eAq~DAMilYdKYFSlQat~~l~~~~~~ 395 (602)
T KOG3590|consen 316 VYLADILFCESALFYFSEYMEKEDAVNILQFWLAADNFQSQLAAKEGQYDGQEAQNDAMILYDKYFSLQATHPLGFDDVV 395 (602)
T ss_pred EeHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhhhhcccccchhhhhcchhHHHHHHhhhhccCccchhHHH
Confidence 5699999999999999999999999999999999999998641 13445688999999999999999999999
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHccccCccccccCCHHHHHHHHhcC
Q psy15721 287 MERTQTELK---NPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKNLLQAGK 336 (571)
Q Consensus 287 re~I~e~Lk---~P~r~lFDeAQ~~Vy~lLMKkDSYPRFLrS~~YkelL~~~~ 336 (571)
|-++...|. .|.+..|+-|....+.. ++...|+.||+|.+|.++|++.+
T Consensus 396 RlevEs~IC~e~gp~~~AF~tAl~~~~~~-Le~KYl~DFLKs~~y~NYlnEL~ 447 (602)
T KOG3590|consen 396 RLEIESNICREGGPLPNAFTTALRQAWTT-LEKKYLPDFLKSNLYYNYLNELI 447 (602)
T ss_pred HHHHHHHhccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999885 47789999999999987 89999999999999999999944
No 10
>KOG0986|consensus
Probab=98.49 E-value=6.3e-07 Score=97.48 Aligned_cols=130 Identities=24% Similarity=0.378 Sum_probs=109.4
Q ss_pred hhhHHHHhc-ChhhHHHHHHHHHhhc-cchhHHHHHHHHHhhhccchhhHHHHHHHHHHhcCCCCCcc-CCCC-HHHHHH
Q psy15721 214 ALSIEDLIK-DPTGLAEFTSYLRKEY-SHENIRFWLMVTELRRSAQSKIPAKVKEIFDEFLKAGAPCE-VNID-GRTMER 289 (571)
Q Consensus 214 s~SLdeLL~-DP~Gr~lFreFLekEf-S~ENL~FWlaVEefKk~~~s~~~~~Ak~IY~kFLapgAP~E-VNID-sktre~ 289 (571)
..+|+.|+. .|+|+.+|++||+..- -...+.||.+|++|.......+...++.|++.||....+.. -+.+ ..+...
T Consensus 50 e~~f~sl~~~QpIGrlLFr~Fc~~~~~~~~~i~Fl~~v~eYE~~~~~~r~~~~~~i~~~~l~~~~~~~~~~~s~~~~v~~ 129 (591)
T KOG0986|consen 50 ELTFESLCEKQPIGRLLFRDFCENRPELRPAIEFLEEVKEYEKADDDERKDKARQILDAYLMKELLACLPQFSSKDLVTH 129 (591)
T ss_pred cccHHHHhccCcHHHHHHHHHHhcCchhhhHHHHHHHHHHHhcCCcccchhhHHHHHHHHhhccccccCCCcchhhhhHH
Confidence 456899998 9999999999999733 45689999999999999988899999999999998654433 3454 555666
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHHccccCccccccCCHHHHHHHHh---cCCCCCCCcc
Q psy15721 290 TQTELK-NPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKNLLQA---GKQPCTKKRF 344 (571)
Q Consensus 290 I~e~Lk-~P~r~lFDeAQ~~Vy~lLMKkDSYPRFLrS~~YkelL~~---~~q~~~KkR~ 344 (571)
+...+. .|.+++|..-.+.|... +..+.|..|+.|..|.+||++ ..++.+++.|
T Consensus 130 ~~~~l~~~~~~~lf~~~~~~~~~~-L~~~pF~~f~~S~yf~rFlQWK~lE~qpvt~n~F 187 (591)
T KOG0986|consen 130 VQEHLLEKPPKDLFQPLARAICAY-LRGDPFQEFLESDYFTRFLQWKWLELQPVTKNTF 187 (591)
T ss_pred HhhhccccCchhhhHHHHHHHHHH-hccchHhHhHHHHHHHHHHHHHHHHhhhccccce
Confidence 666553 47889999999999986 899999999999999999999 6789999977
No 11
>PF09128 RGS-like: Regulator of G protein signalling-like domain; InterPro: IPR015212 This entry represents a domain consisting of twelve helices that fold into a compact structure that contains the overall structural scaffold observed in other regulator of G protein signalling (RGS) proteins and three additional helical elements that pack closely to it. Helices 1-9 comprise the RGS fold, in which helices 4-7 form a classic antiparallel bundle adjacent to the other helices. Like other RGS structures, helices 7 and 8 span the length of the folded domain and form essentially one continuous helix with a kink in the middle. Helices 10-12 form an apparently stable C-terminal extension of the structural domain, and although other RGS proteins lack this structure, these elements are intimately associated with the rest of the structural framework by hydrophobic interactions. This domain binds to active G-alpha proteins, promoting GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. ; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0005737 cytoplasm; PDB: 3CX6_B 3CX8_B 3CX7_B 1HTJ_F 1SHZ_C 3AB3_D 1IAP_A.
Probab=97.94 E-value=5.1e-05 Score=74.58 Aligned_cols=98 Identities=24% Similarity=0.381 Sum_probs=77.0
Q ss_pred hhHHHHhcChhhHHHHHHHHHhhccchhHHHHHHHHHhhhccchhhHHHHHHHHHHhcCCCCCccCCCCHHHHHHHHH--
Q psy15721 215 LSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQT-- 292 (571)
Q Consensus 215 ~SLdeLL~DP~Gr~lFreFLekEfS~ENL~FWlaVEefKk~~~s~~~~~Ak~IY~kFLapgAP~EVNIDsktre~I~e-- 292 (571)
.+|+.|...|.-+..|..|+-.++-..-|.||+-.+-|+....++..+.|.+||..||.++||..|+++..+...|..
T Consensus 6 ~sl~~Lk~rPaHlaVFl~yv~sq~dP~~LLfyL~~d~yk~~~~Ke~rk~~~ei~stFL~~~ApL~v~v~~~v~~ei~~~~ 85 (188)
T PF09128_consen 6 QSLELLKSRPAHLAVFLNYVLSQFDPSPLLFYLIADLYKQGNAKEMRKWAYEIHSTFLDPGAPLRVNVPESVASEIDRTR 85 (188)
T ss_dssp HSHHHHHC-HHHHHHHHHHHHHHS-SHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHTSTT-TT-----HHHHHHHTT-H
T ss_pred cCHHHHhcCcHHHHHHHHHHHhcCCcchHHHHHHHHHHhccCHHHHHHHHHHHHHHHcCCCCCceecCCHHHHHhHHhhc
Confidence 368889999999999999999999999999999999999988888999999999999999999999999999888842
Q ss_pred -Hh-c-CCCHHHHHHHHHHHHHH
Q psy15721 293 -EL-K-NPSRFTYDAAAEHIYTL 312 (571)
Q Consensus 293 -~L-k-~P~r~lFDeAQ~~Vy~l 312 (571)
.+ . +--+.+|..||+.+...
T Consensus 86 ~~~~~~e~~r~~f~~~~~~a~~e 108 (188)
T PF09128_consen 86 PELIKEEILRQIFQEAQQRALPE 108 (188)
T ss_dssp HHHCTTHCHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHH
Confidence 22 1 24478999999887764
No 12
>KOG0063|consensus
Probab=41.17 E-value=6.5 Score=44.25 Aligned_cols=95 Identities=8% Similarity=-0.120 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHhhhccch---hhHHHHHHHHHHhcCCCCCccCCCCHHHHHHHHHHhcCCCHHH
Q psy15721 225 TGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQS---KIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFT 301 (571)
Q Consensus 225 ~Gr~lFreFLekEfS~ENL~FWlaVEefKk~~~s---~~~~~Ak~IY~kFLapgAP~EVNIDsktre~I~e~Lk~P~r~l 301 (571)
.++-.||=+|..++.+++++||..+..|..-.-. -.+. .++..+.-.+.+..+|+..+....+.++..++-+..
T Consensus 495 AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps---~~~~a~~p~~Ll~gmN~fl~~l~itfRrd~n~~rpr 571 (592)
T KOG0063|consen 495 ASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPS---VNTVANSPQSLLAGMNRFLKNLDITFRRDPNNFRPR 571 (592)
T ss_pred HHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcc---cccccCChhHHHHHhHHHHhhcceeeccCCcccccc
Confidence 4566888999999999999999999999875421 1111 455556555566667777777666666666666678
Q ss_pred HHHHHHHHHHHccccCcccccc
Q psy15721 302 YDAAAEHIYTLLLKNDCYPRFI 323 (571)
Q Consensus 302 FDeAQ~~Vy~lLMKkDSYPRFL 323 (571)
++..+..... .+|++.|..|+
T Consensus 572 ink~~s~~d~-~qK~~g~~ffl 592 (592)
T KOG0063|consen 572 INKLDSQKDV-EQKKSGQYFFL 592 (592)
T ss_pred cchhhHHHHH-HHhhcCCcccC
Confidence 8888888886 48888888875
No 13
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.48 E-value=5.9e+02 Score=26.39 Aligned_cols=137 Identities=15% Similarity=0.260 Sum_probs=70.1
Q ss_pred cCCHHHHHHHHHHHHHhhcccccchhHHHHhHHHHHhhhccCCCccc---CCCC-----CC--CCCcCCcccccccCCCC
Q psy15721 133 KRSVEDLKKEVDFLKSCLEKTRTKTSLVVESLIPFSETYAEYDAFFT---TPNP-----SN--PWHNDDTTYWLLNSPLV 202 (571)
Q Consensus 133 ~~s~d~lrreIE~Lr~~L~r~RiKvSka~E~Li~Yceq~~~yDPlLs---gp~p-----sN--PWisDD~~~W~~n~~~~ 202 (571)
...++.|+.+|..||-.++.....+....+.-... |.+-|-.+. +..+ .+ +=.+.+..--...+. .
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~---y~dld~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 135 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI---YLQIDSLSSGGAAAQSTSGDQSGAAASATPAADAGTANAG-A 135 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccCCccccccccCCCccccccCccccccc-C
Confidence 45678888888888888888777777665543332 222333332 1100 00 000000000000000 0
Q ss_pred CCCCHHHHHHhhhhHHHHhc---ChhhHHHHHHHHHhhccc---hhHHHHHHHHHhhhccchhhHHHHHHHHHHhcC--C
Q psy15721 203 EVPTEKRVRRWALSIEDLIK---DPTGLAEFTSYLRKEYSH---ENIRFWLMVTELRRSAQSKIPAKVKEIFDEFLK--A 274 (571)
Q Consensus 203 ~~PT~~rV~rWs~SLdeLL~---DP~Gr~lFreFLekEfS~---ENL~FWlaVEefKk~~~s~~~~~Ak~IY~kFLa--p 274 (571)
..++...-.-+..-+..++. -......|..|++....+ .|..||+.--.|.... ...|...|.+++. |
T Consensus 136 ~~~~~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~----~~~A~~~f~~vv~~yP 211 (263)
T PRK10803 136 PVQSGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK----KDDAAYYFASVVKNYP 211 (263)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHCC
Confidence 01111121222333444443 245677899999988765 5999999988777553 2445556666663 5
Q ss_pred CCC
Q psy15721 275 GAP 277 (571)
Q Consensus 275 gAP 277 (571)
+++
T Consensus 212 ~s~ 214 (263)
T PRK10803 212 KSP 214 (263)
T ss_pred CCc
Confidence 543
No 14
>PF04868 PDE6_gamma: Retinal cGMP phosphodiesterase, gamma subunit; InterPro: IPR006952 Retinal rod and cone cGMP phosphodiesterases function as the effector enzymes in the vertebrate visual transduction cascade. This family represents the inhibitory gamma subunit [], which is also expressed outside retinal tissues and has been shown to interact with the G-protein-coupled receptor kinase 2 signalling system to regulate the epidermal growth factor- and thrombin-dependent stimulation of p42/p44 mitogen-activated protein kinase in human embryonic kidney 293 cells [].; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0030553 cGMP binding, 0007601 visual perception; PDB: 2JU4_A 1FQJ_C 3JWR_D.
Probab=23.94 E-value=27 Score=30.51 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=9.0
Q ss_pred CCCccCcCCCCCc
Q psy15721 542 KNTEVCPWEDEES 554 (571)
Q Consensus 542 ~~~~~~~~~~~~~ 554 (571)
|-+-|||||.-..
T Consensus 59 d~tvicpweaf~~ 71 (83)
T PF04868_consen 59 DITVICPWEAFSH 71 (83)
T ss_dssp HHHTT-CCCCCTT
T ss_pred ceeEEcchHhhcc
Confidence 6778999996543
No 15
>PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.
Probab=21.04 E-value=35 Score=33.45 Aligned_cols=51 Identities=22% Similarity=0.558 Sum_probs=42.0
Q ss_pred hcCcchhhhHHHHHHHHHHhhccccchhhhhhhhhhhhhccC-CCCCCCCCCCCCc
Q psy15721 68 LANKWDLVSMQAEEQVRLAKDRKKVDKIVADSQERAYWRVHR-PPPGCTSSLEPIP 122 (571)
Q Consensus 68 ~~~~W~fi~mqA~~q~r~~K~r~K~dR~v~dsQErAfW~VhR-Pppg~~n~~e~~~ 122 (571)
+-.+| -||..=++....-.+..++.+......||++++ |.+|+..|.|.-.
T Consensus 120 iDgTW----~qA~km~~~~p~l~~lp~v~l~~~~~s~y~lRk~~~~~~lsT~EAv~ 171 (203)
T PF03942_consen 120 IDGTW----RQAKKMLRRSPWLQQLPRVSLKPSPPSFYRLRKQPKEGCLSTLEAVA 171 (203)
T ss_pred ECCch----HHHHHHHhhCccccCCceeeCCCCcccceeeEecCCCCCEeHHHHHH
Confidence 45566 688888887777788899999999999999988 5689998888765
Done!