RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15721
(571 letters)
>gnl|CDD|188660 cd08705, RGS_R7-like, Regulator of G protein signaling (RGS) domain
found in the R7 subfamily of proteins. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the R7 (Neuronal RGS) protein
subfamily of the RGS protein family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. The R7 subfamily
includes RGS6, RGS7, RGS9, and RGS11, all of which, in
humans, are expressed predominantly in the nervous
system, form an obligatory complex with G-beta-5, and
play important roles in the regulation of crucial
neuronal processes. In addition, R7 proteins were found
to bind many other proteins outside of the G protein
signaling pathways including: m-opioid receptor,
beta-arrestin, alpha-actinin-2, NMDAR, polycystin,
spinophilin, guanylyl cyclase, among others.
Length = 121
Score = 203 bits (518), Expect = 3e-63
Identities = 65/122 (53%), Positives = 85/122 (69%), Gaps = 1/122 (0%)
Query: 209 RVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKVKEIF 268
RV+RW S +L+KDP G +F +L KE+S EN+RFW +L+ QS++P KV+EI+
Sbjct: 1 RVKRWGFSFSELLKDPVGREQFLKFLEKEFSGENLRFWEACQDLKYGPQSQVPEKVQEIY 60
Query: 269 DEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHY 328
EFL GAP +NID +TME T LK+P R+T+DAA EHIY L+K D YPRF+RSD Y
Sbjct: 61 QEFLAPGAPSWINIDSKTMEITLKNLKDPHRYTFDAAQEHIYM-LMKKDSYPRFLRSDIY 119
Query: 329 KN 330
K
Sbjct: 120 KE 121
>gnl|CDD|188694 cd08740, RGS_RGS11, Regulator of G protein signaling (RGS) domain
found in the RGS11 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS11 protein, a member of R7 subfamily of the RGS
protein family. RGS is a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. Other members of
the R7 subfamily (Neuronal RGS) include: RGS6, RGS7, and
RGS9, all of which are expressed predominantly in the
nervous system, form an obligatory complex with
G-beta-5, and play important roles in the regulation of
crucial neuronal processes such as vision and motor
control. Additionally they have been implicated in many
neurological conditions such as anxiety, schizophrenia,
and drug dependence. RGS11 is expressed exclusively in
retinal ON-bipolar neurons in which it forms complexes
with G-beta-5 and R7AP (RGS7 anchor protein ) and
plays crucial roles in processing the light responses of
retinal neurons.
Length = 126
Score = 141 bits (357), Expect = 5e-40
Identities = 64/124 (51%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Query: 209 RVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKVKEIF 268
RV RW S +L+ DP G EF +L KE+S EN+ FW ELR QSKIP V ++
Sbjct: 2 RVERWGFSFRELLNDPVGRKEFLDFLEKEFSAENLSFWEACEELRYGEQSKIPELVDSVY 61
Query: 269 DEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHY 328
+FL GA VNID +TMERT LK P R+ D A HIY +L+K D YPRF++SD Y
Sbjct: 62 QQFLAPGATRWVNIDSKTMERTLEGLKQPHRYVLDDAQMHIY-MLMKKDSYPRFLKSDLY 120
Query: 329 KNLL 332
KNLL
Sbjct: 121 KNLL 124
>gnl|CDD|216023 pfam00615, RGS, Regulator of G protein signaling domain. RGS
family members are GTPase-activating proteins for
heterotrimeric G-protein alpha-subunits.
Length = 117
Score = 132 bits (334), Expect = 9e-37
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 216 SIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAKVKEIFDEFLKA 274
S E L+ D G F +L E+S EN+ FWL E +++ + K +EI+++FL
Sbjct: 1 SFESLLSDQPGRRLFREFLESEFSEENLEFWLACEEFKKAKSDEERLKKAREIYNKFLAP 60
Query: 275 GAPCEVNIDGRTMERTQTELKN-PSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKNL 331
+P E+N+D T E+ + L+ PS +D A E +Y L++ D YPRF++S Y L
Sbjct: 61 DSPSEINLDSDTREKIEENLEKQPSPDLFDEAQEEVYD-LMEKDSYPRFLKSPLYLRL 117
>gnl|CDD|188691 cd08737, RGS_RGS6, Regulator of G protein signaling (RGS) domain
found in the RGS6 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS6 protein, a member of R7 subfamily of the RGS
protein family. RGS is a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). Other members of the R7 subfamily
(Neuronal RGS) include: RGS7, RGS9, and RGS11, all of
which are expressed predominantly in the nervous system,
form an obligatory complex with G-beta-5, and play
important roles in the regulation of crucial neuronal
processes such as vision and motor control.
Additionally they have been implicated in many
neurological conditions such as anxiety, schizophrenia,
and drug dependence. RGS6 exists in multiple splice
isoforms with identical RGS domains, but possess
complete or incomplete GGL domains and distinct N- and
C-terminal domains. RGS6 interacts with SCG10, a
neuronal growth-associated protein and therefore
regulates neuronal differentiation. Another RGS6-binding
protein is DMAP1, a component of the Dnmt1 complex
involved in repression of newly replicated genes.
Mutations of a critical residue required for interaction
of RGS6 protein with G proteins did not affect the
ability of RGS6 to interact with both SCG10 and DMAP1.
As a major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis.
Length = 125
Score = 128 bits (323), Expect = 3e-35
Identities = 54/125 (43%), Positives = 87/125 (69%), Gaps = 1/125 (0%)
Query: 208 KRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKVKEI 267
+RV+RW S+++++KDP G +F +L E+S EN+RFWL V +L++ + +V+EI
Sbjct: 1 QRVKRWGFSLDEVLKDPVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQDVAKRVEEI 60
Query: 268 FDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDH 327
+ EFL GAP +N+D + E+T +K+P R+T++ A EHIY L+K+D Y RF+RS+
Sbjct: 61 WQEFLAPGAPSAINLDSHSYEKTSQNVKDPGRYTFEDAQEHIYK-LMKSDSYARFLRSNA 119
Query: 328 YKNLL 332
Y++LL
Sbjct: 120 YQDLL 124
>gnl|CDD|188692 cd08738, RGS_RGS7, Regulator of G protein signaling (RGS) domain
found in the RGS7 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS7 protein, a member of R7 subfamily of the RGS
protein family. RGS is a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. As a major
G-protein regulator, RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. Other members of the R7 subfamily
(Neuronal RGS) include: RGS6, RGS9, and RGS11, all of
which are expressed predominantly in the nervous system,
form an obligatory complex with G-beta-5, and play
important roles in the regulation of crucial neuronal
processes such as vision and motor control.
Additionally they have been implicated in many
neurological conditions such as anxiety, schizophrenia,
and drug dependence. R7 RGS proteins are key modulators
of the pharmacological effects of drugs involved in the
development of tolerance and addiction. In addition,
RGS7 was found to bind a component of the synaptic
fusion complex, snapin, and some other proteins outside
of G protein signaling pathways.
Length = 121
Score = 127 bits (319), Expect = 8e-35
Identities = 53/121 (43%), Positives = 85/121 (70%), Gaps = 1/121 (0%)
Query: 209 RVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKVKEIF 268
RV+RW +++ +KDP G +F +L E+S EN+RFWL V +L++ ++P++V+EI+
Sbjct: 1 RVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIREVPSRVQEIW 60
Query: 269 DEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHY 328
EFL GAP +N+D ++ ++T +K+P R+T++ A EHIY L+K+D YPRFIRS Y
Sbjct: 61 QEFLAPGAPSAINLDSKSYDKTTQNVKDPGRYTFEDAQEHIYK-LMKSDSYPRFIRSSAY 119
Query: 329 K 329
+
Sbjct: 120 Q 120
>gnl|CDD|214613 smart00315, RGS, Regulator of G protein signalling domain. RGS
family members are GTPase-activating proteins for
heterotrimeric G-protein alpha-subunits.
Length = 118
Score = 122 bits (308), Expect = 4e-33
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 216 SIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQ-SKIPAKVKEIFDEFLKA 274
S+E L+ DP G F +L E+S EN+ FWL V E +++ + AK +EI+D+FL
Sbjct: 1 SLESLLSDPIGRLLFREFLESEFSEENLEFWLAVEEFKKAEDDEERIAKAREIYDKFLSP 60
Query: 275 GAPCEVNIDGRTMERTQTELKN--PSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKNL 331
AP EVN+D E+ + L++ P +D A +Y LL+ D +PRF+ SD+Y
Sbjct: 61 NAPKEVNLDSDLREKIEENLESEEPPPDLFDEAQREVYE-LLEKDSFPRFLESDYYLRF 118
>gnl|CDD|188693 cd08739, RGS_RGS9, Regulator of G protein signaling (RGS) domain
found in the RGS9 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS9 protein, a member of R7 subfamily of the RGS
protein family. RGS is a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. Other members of
the R7 subfamily (Neuronal RGS) include: RGS6, RGS7, and
RGS11, all of which are expressed predominantly in the
nervous system, form an obligatory complex with
G-beta-5, and play important roles in the regulation of
crucial neuronal processes such as vision and motor
control. Additionally they have been implicated in many
neurological conditions such as anxiety, schizophrenia,
and drug dependence. RGS9 forms constitutive complexes
with G-beta-5 subunit and controls such fundamental
functions as vision and behavior. RGS9 exists in two
splice isoforms: RGS9-1 which regulates
phototransduction in rods and cones and RGS9-2 which
regulates dopamine and opioid signaling in the basal
ganglia. In addition, RGS9 was found to bind many other
proteins outside of G protein signaling pathways
including: mu-opioid receptor, beta-arrestin,
alpha-actinin-2, NMDAR, polycystin, spinophilin, and
guanylyl cyclase, among others.
Length = 121
Score = 118 bits (297), Expect = 9e-32
Identities = 55/121 (45%), Positives = 77/121 (63%), Gaps = 1/121 (0%)
Query: 209 RVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKVKEIF 268
RV RWA + +LI+DP G F +L+KE+S EN+ FW +L+ QSK+ K +EI+
Sbjct: 1 RVERWAFNFSELIRDPKGRQSFQLFLKKEFSGENLGFWEACEDLKYGDQSKVKEKAEEIY 60
Query: 269 DEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHY 328
FL GA +NIDG+TM+ T LK+P R+ DAA HIY +L+K D Y R+++S Y
Sbjct: 61 KLFLAPGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIY-MLMKKDSYARYLKSPIY 119
Query: 329 K 329
K
Sbjct: 120 K 120
>gnl|CDD|188668 cd08713, RGS_RGS3, Regulator of G protein signaling (RGS) domain
found in the RGS3 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS3 protein. RGS3 is a member of the R4/RGS subfamily
of the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha subunits. The RGS
domain controls G-protein signaling by accelerating the
GTPase activity of the G-alpha subunit which leads to G
protein deactivation and promotes desensitization. As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular
processes. RGS3 induces apoptosis when overexpressed and
is involved in cell migration through interaction with
the Ephrin receptor. RGS3 exits as several splice
isoforms and interacts with neuroligin, estrogen
receptor-alpha, and 14-3-3 outside of the GPCR pathways.
Length = 114
Score = 100 bits (251), Expect = 2e-25
Identities = 48/113 (42%), Positives = 73/113 (64%), Gaps = 2/113 (1%)
Query: 217 IEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-SAQSKIPAKVKEIFDEFLKAG 275
+E L+ GLA F ++L+ E+S EN+ FWL E ++ +QSK+ ++ K+IF E++
Sbjct: 1 LEKLLLHKYGLAVFRAFLQTEFSEENLEFWLACEEYKKIKSQSKMASRAKKIFAEYIAIQ 60
Query: 276 APCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHY 328
+ EVN+D T E T+ L+NP+R +D A + IY L+ K D YPRF+RSD Y
Sbjct: 61 SCKEVNLDSYTREHTKENLQNPTRGCFDLAQKRIYGLMEK-DSYPRFLRSDLY 112
>gnl|CDD|188661 cd08706, RGS_R12-like, Regulator of G protein signaling (RGS)
domain found in the R12 subfamily of proteins. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the R12 (Neuronal RGS) protein
subfamily of the RGS protein family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins play a critical
regulatory role as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits.
Deactivation of G-protein signaling, controlled by RGS
domain, accelerates GTPase activity of the alpha subunit
by hydrolysis of GTP to GDP that results in
reassociation of the alpha-subunit with the
beta-gamma-dimer and thereby inhibition of downstream
activity. As a major G-protein regulator, RGS domain
containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. The R12 RGS
subfamily includes RGS10, RGS12 and RGS14 all of which
are highly selective for G-alpha-i1 over G-alpha-q.
Length = 113
Score = 99.7 bits (249), Expect = 5e-25
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 218 EDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-SAQSKIPAKVKEIFDEFLKAGA 276
E L++DP G+ FT +L+KE+S ENI FW + ++ + ++ + +EI+D FL + A
Sbjct: 2 ERLLQDPVGVKYFTEFLKKEFSEENILFWQACEKFKKIPDKKQLVQEAREIYDTFLSSKA 61
Query: 277 PCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
VNID + + L+ P + I+ L+K D Y RF++S Y+
Sbjct: 62 SSPVNIDS-QAQLAEEMLEEPHPDMFQKQQLQIFN-LMKFDSYSRFLKSPLYQQ 113
>gnl|CDD|188673 cd08718, RGS_RZ-like, Regulator of G protein signaling (RGS) domain
found in the RZ protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RZ subfamily of the RGS protein family. They are a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins play critical
regulatory roles as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits.
Deactivation of G-protein signaling is controlled by RGS
domains, which accelerate GTPase activity of the alpha
subunit by hydrolysis of GTP to GDP, which results in
reassociation of the alpha-subunit with the
beta-gamma-dimer and inhibition of downstream activity.
As a major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. The RZ subfamily of RGS proteins includes
RGS17, RGS19 (former GAIP), RGS20, and its splice
variant Ret-RGS.
Length = 118
Score = 96.4 bits (240), Expect = 7e-24
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 213 WALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAKVKEIFDEF 271
WA S + L+K P G F +LR EYS EN+ FWL EL++ A + I K + I++++
Sbjct: 1 WAQSFDKLMKSPAGRNVFREFLRTEYSEENMLFWLACEELKKEANKHVIEEKARLIYEDY 60
Query: 272 LKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
+ +P EV++D R E + PS T+D A IYTL+ + D YPRF+ S YK+
Sbjct: 61 ISILSPKEVSLDSRVREVINRNMLEPSPHTFDDAQLQIYTLMHR-DSYPRFLNSAIYKS 118
>gnl|CDD|188672 cd08717, RGS_RGS5, Regulator of G protein signaling (RGS) domain
found in the RGS5 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS5 protein. RGS5 is member of the R4/RGS subfamily of
the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory roles as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha subunits. The RGS domain controls
G-protein signaling by accelerating the GTPase activity
of the G-alpha subunit which leads to G protein
deactivation and promotes desensitization. As a major
G-protein regulator, RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. Two splice isoforms of RGS5 has been
found: RGS5L (long) which is expressed in smooth muscle
cells (pericytes) and heart and RGS5S (short) which is
highly expressed in the ciliary body of the eye, kidney,
brain, spleen, skeletal muscle, and small intestine.
Outside of the GPCR pathway, RGS5 interacts with the
14-3-3 protein.
Length = 114
Score = 95.1 bits (236), Expect = 2e-23
Identities = 44/114 (38%), Positives = 72/114 (63%), Gaps = 2/114 (1%)
Query: 217 IEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRS-AQSKIPAKVKEIFDEFLKAG 275
++ L+++ GLA F S+L+ E+S ENI FW + +++ + K+ K K+I++EF++
Sbjct: 1 LDKLLQNSYGLASFKSFLKSEFSEENIEFWEACEDYKKTKSPLKMATKAKKIYEEFIQTE 60
Query: 276 APCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYK 329
AP EVNID T + T L PS ++D A + I+ L+ K D PRF+RS+ Y+
Sbjct: 61 APKEVNIDHFTKDVTMKNLVEPSSSSFDLAQKRIFALMEK-DSLPRFVRSEFYQ 113
>gnl|CDD|188670 cd08715, RGS_RGS1, Regulator of G protein signaling (RGS) domain
found in the RGS1 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS1 protein. RGS1 is a member of the R4/RGS subfamily
of the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory roles as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha subunits. The RGS domain controls
G-protein signaling by accelerating the GTPase activity
of the G-alpha subunit which leads to G protein
deactivation and promotes desensitization. As a major
G-protein regulator, RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS 1 is expressed predominantly in
hematopoietic compartments, including T and B
lymphocytes, and may play a major role in
chemokine-mediated homing of lymphocytes to secondary
lymphoid organs. In addition, RGS1 interacts with
calmodulin and 14-3-3 protein outside of the GPCR
pathway.
Length = 114
Score = 93.1 bits (231), Expect = 8e-23
Identities = 46/115 (40%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Query: 217 IEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKVKEIFDEFLKAGA 276
+E L+ TG F S+L+ E+S ENI FWL + +++ +P K +EI+ EF+++ A
Sbjct: 1 LEKLLASQTGQNVFRSFLKSEFSEENIEFWLACEDYKKTESDLLPCKAEEIYKEFVQSDA 60
Query: 277 PCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKNL 331
++NID RT E T ++K P+ +D A + IY L+ + D YPRF++SD Y NL
Sbjct: 61 AKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYILMER-DSYPRFLKSDIYLNL 114
>gnl|CDD|188666 cd08711, RGS_RGS8, Regulator of G protein signaling (RGS) domain
found in the RGS8 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS8 protein. RGS8 is a member of R4/RGS subfamily of
RGS family, a diverse group of multifunctional proteins
that regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins play
critical regulatory roles as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha subunits.
The RGS domain controls G-protein signaling by
accelerating the GTPase activity of the G-alpha subunit
which leads to G protein deactivation and promotes
desensitization. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS8 is involved
in G-protein-gated potassium channels regulation and
predominantly expressed in the brain. RGS8 also is
selectively expressed in the hematopoietic system (NK
cells).
Length = 125
Score = 92.9 bits (230), Expect = 2e-22
Identities = 48/120 (40%), Positives = 75/120 (62%), Gaps = 2/120 (1%)
Query: 212 RWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRS-AQSKIPAKVKEIFDE 270
RWA S + L+ G+A F ++L+ E+S EN+ FWL E +++ + +K+ +K IF+E
Sbjct: 7 RWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEE 66
Query: 271 FLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
F+ AP EVNID +T E T+ L+ PS +D A +++L+ K D YPRF+RS Y +
Sbjct: 67 FVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEK-DSYPRFLRSKMYLD 125
>gnl|CDD|188669 cd08714, RGS_RGS4, Regulator of G protein signaling (RGS) domain
found in the RGS4 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS4 protein. RGS4 is a member of the R4/RGS subfamily
of the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha subunits. The RGS
domain controls G-protein signaling by accelerating the
GTPase activity of the G-alpha subunit which leads to G
protein deactivation and promotes desensitization. RGS4
is expressed widely in brain including prefrontal
cortex, striatum, locus coeruleus (LC), and hippocampus
and has been implicated in regulation of opioid,
cholinergic, and serotonergic signaling. Dysfunctions in
RGS4 proteins are involved in etiology of Parkinson's
disease, addiction, and schizophrenia. RGS4 also is
up-regulated in the failing human heart. RGS4 interacts
with many binding partners outside of GPCR pathways,
including calmodulin, COP, Kir3, PIP, calcium/CaM, PA,
ErbB3, and 14-3-3.
Length = 114
Score = 91.1 bits (226), Expect = 5e-22
Identities = 43/113 (38%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Query: 217 IEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRS-AQSKIPAKVKEIFDEFLKAG 275
+E+LI GLA F ++L+ EYS ENI FW+ + +++ + SK+ K ++I++EF+
Sbjct: 1 LENLINHECGLAAFKAFLKSEYSEENIDFWVSCEDYKKTKSPSKLSPKARKIYEEFISVQ 60
Query: 276 APCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHY 328
A EVN+D T E T + P+ +D A + I+TL+ K D Y RF++S Y
Sbjct: 61 ATKEVNLDSCTREETSRNMLEPTISCFDEAQKKIFTLMEK-DSYRRFLKSRFY 112
>gnl|CDD|188699 cd08745, RGS_RGS19, Regulator of G protein signaling (RGS) domain
found in the RGS19 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS19 protein (also known as GAIP), a member of the RZ
subfamily of the RGS protein family. They are a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha-subunits. Deactivation
of G-protein signaling is controlled by RGS domains,
which accelerate GTPase activity of the alpha subunit by
hydrolysis of GTP to GDP, resulting in a reassociation
of the alpha-subunit with the beta-gamma-dimer and an
inhibition of downstream activity. As a major G-protein
regulator, the RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. The RZ subfamily of RGS proteins includes
RGS17, RGS20, and its splice variant Ret-RGS. RGS19
participates in regulation of dopamine receptor D2R and
D3R, as well as beta-adrenergic receptors .
Length = 118
Score = 90.1 bits (223), Expect = 1e-21
Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 213 WALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAKVKEIFDEF 271
WA S + L+K P G F +LR EYS EN+ FWL EL+ A + I K + I++++
Sbjct: 1 WAQSFDKLMKSPAGRNVFREFLRTEYSEENMLFWLACEELKAEANKHVIDEKARLIYEDY 60
Query: 272 LKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYK 329
+ +P EV++D R E +++ PS T+D A IYTL+ + D YPRF+ S YK
Sbjct: 61 ISILSPKEVSLDSRVREGINRKMQEPSSHTFDDAQLQIYTLMHR-DSYPRFLNSPIYK 117
>gnl|CDD|188700 cd08746, RGS_RGS20, Regulator of G protein signaling (RGS) domain
found in the RGS20 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS20 protein (also known as RGSZ1), a member of the RZ
subfamily of the RGS protein family. They are a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha-subunits. Deactivation
of G-protein signaling is controlled by the RGS domain,
which accelerates GTPase activity of the alpha subunit
by hydrolysis of GTP to GDP resulting in reassociation
of the alpha-subunit with the beta-gamma-dimer and
inhibition of downstream activity. As a major G-protein
regulator, the RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. The RZ subfamily of RGS proteins include
RGS17, RGS19 (former GAIP), and the splice variant of
RGS20, Ret-RGS. RGS20 is expressed exclusively in brain,
with the highest concentrations in the temporal lobe and
the caudate nucleus and may play a role in signaling
regulation in these brain regions. RGS20 acts as a GAP
of both G-alpha-z and G-alpha-I and controls signaling
in the mu opioid receptor pathway.
Length = 167
Score = 91.6 bits (227), Expect = 1e-21
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Query: 205 PTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAK 263
PT + V W S + L+ P G F +LR E+S EN+ FW+ EL++ A +S I K
Sbjct: 42 PTLEEVCAWGQSFDKLMLTPAGRNAFREFLRTEFSEENMLFWMACEELKKEANKSVIEEK 101
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
+ I+++++ +P EV++D R E + PS+ T+D A IYT L+ D YPRF+
Sbjct: 102 ARIIYEDYISILSPKEVSLDSRVREVINRNMLEPSQHTFDDAQLQIYT-LMHRDSYPRFM 160
Query: 324 RSDHYKN 330
S YKN
Sbjct: 161 NSAIYKN 167
>gnl|CDD|188659 cd07440, RGS, Regulator of G protein signaling (RGS) domain
superfamily. The RGS domain is an essential part of the
Regulator of G-protein Signaling (RGS) protein family, a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins play critical
regulatory roles as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. While
inactive, G-alpha-subunits bind GDP, which is released
and replaced by GTP upon agonist activation. GTP binding
leads to dissociation of the alpha-subunit and the
beta-gamma-dimer, allowing them to interact with
effectors molecules and propagate signaling cascades
associated with cellular growth, survival, migration,
and invasion. Deactivation of the G-protein signaling
controlled by the RGS domain accelerates GTPase activity
of the alpha subunit by hydrolysis of GTP to GDP, which
results in the reassociation of the alpha-subunit with
the beta-gamma-dimer and thereby inhibition of
downstream activity. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS proteins are
also involved in apoptosis and cell proliferation, as
well as modulation of cardiac development. Several RGS
proteins can fine-tune immune responses, while others
play important roles in neuronal signals modulation.
Some RGS proteins are principal elements needed for
proper vision.
Length = 113
Score = 89.0 bits (221), Expect = 2e-21
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Query: 223 DPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQS--KIPAKVKEIFDEFLKAGAPCEV 280
DP GL F +L+ E+ EN+ FWL V + +++ S ++ +K KEI+D+++ AP E+
Sbjct: 3 DPYGLEYFRQFLKSEHCEENLEFWLAVEKFKKTTSSDEELKSKAKEIYDKYISKDAPKEI 62
Query: 281 NIDGRTMERTQTELKNP--SRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYK 329
NI E + L+ P +D A EHI LL+ D YPRF++SD Y
Sbjct: 63 NIPESIREEIEENLEEPYPDPDCFDEAQEHILN-LLEKDSYPRFLKSDLYL 112
>gnl|CDD|188667 cd08712, RGS_RGS18, Regulator of G protein signaling (RGS) domain
found in the RGS18 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS18 protein. RGS18 is a member of the RGS protein
family, a diverse group of multifunctional proteins that
regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins play
critical regulatory roles as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha subunits.
The RGS domain controls G-protein signaling by
accelerating the GTPase activity of the G-alpha subunit
which leads to G protein deactivation and promotes
desensitization. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS18 is a member
of the R4/RGS subfamily and is expressed predominantly
in osteoclasts where it acts as a negative regulator of
the acidosis-induced osteoclastogenic OGR1/NFAT
signaling pathway. RANKL (receptor activator of nuclear
factor B ligand) stimulates osteoclastogenesis by
inhibiting expression of RGS18.
Length = 114
Score = 88.1 bits (218), Expect = 6e-21
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 218 EDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSK-IPAKVKEIFDEFLKAGA 276
+ L+ GL FT +L+ E+S ENI FW+ + ++S + I K K I+++F++ A
Sbjct: 2 DKLLSHKDGLEAFTRFLKTEFSEENIEFWIACEDYKKSKTPQQIHLKAKAIYEKFIQTDA 61
Query: 277 PCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
P EVN+D T E T ++ P+ ++DAA +Y L+ + D YPRF++SD Y +
Sbjct: 62 PKEVNLDFHTKEVTTNSIEQPTLTSFDAAQSRVYQLMEQ-DSYPRFLKSDIYLD 114
>gnl|CDD|188697 cd08743, RGS_RGS14, Regulator of G protein signaling (RGS) domain
found in the RGS14 protein. RGS (Regulator of G-protein
Signaling) domain is an essential part of the RGS14
protein. RGS14 is a member of the RA/RGS subfamily of
RGS proteins family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS14 belong to the R12 RGS subfamily,
which includes RGS10 and RGS12, all of which are highly
selective for G-alpha-i1 over G-alpha-q. RGS14 binds
and regulates the subcellular localization and
activities of H-Ras and Raf kinases in cells and
thereby integrates G protein and Ras/Raf signaling
pathways.
Length = 129
Score = 85.5 bits (211), Expect = 7e-20
Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 207 EKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR---SAQSKIPAK 263
EK V WA+S E L++DP G+ FT +L+KE+S EN+ FW ++ S ++ +
Sbjct: 1 EKSVASWAVSFERLLQDPLGVEYFTEFLKKEFSAENVNFWKACERFQQIPASDTQQLAQE 60
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
++I++EFL + + VNID + + L PS + A I+ L+K D Y RF+
Sbjct: 61 ARKIYNEFLSSSSQSPVNID-QQAWIGEDMLATPSPDMFRAQQLQIFN-LMKFDSYARFV 118
Query: 324 RSDHYKNLLQA 334
+S Y++ L A
Sbjct: 119 KSPLYQDCLLA 129
>gnl|CDD|188665 cd08710, RGS_RGS16, Regulator of G protein signaling (RGS) domain
found in the RGS16 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS16 protein. RGS16 is a member of the RGS protein
family, a diverse group of multifunctional proteins that
regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins play
critical regulatory roles as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha subunits.
The RGS domain controls G-protein signaling by
accelerating the GTPase activity of the G-alpha subunit
which leads to G protein deactivation and promotes
desensitization. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS16 is a member
of the R4/RGS subfamily and interacts with neuronal
G-alpha0. RGS16 expression is upregulated by IL-17 of
the NF-kappaB signaling pathway in autoimmune B cells.
Length = 114
Score = 84.7 bits (209), Expect = 8e-20
Identities = 42/112 (37%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Query: 220 LIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRS-AQSKIPAKVKEIFDEFLKAGAPC 278
L+ G+A F ++L+ E+S EN+ FWL E ++ + +K+ ++ IF+EF+++ AP
Sbjct: 4 LLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFEEFIRSEAPK 63
Query: 279 EVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
EVNID T E T+T L+ + +D A TL+ K D YPRF++S Y++
Sbjct: 64 EVNIDHETRELTRTNLQAATTSCFDVAQGKTRTLMEK-DSYPRFLKSPAYRD 114
>gnl|CDD|188678 cd08723, RGS_RGS21, Regulator of G protein signaling (RGS) domain
found in the RGS21 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part RGS21
protein, a member of RGS protein family. They are a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins play critical
regulatory roles as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular
processes. RGS proteins regulate many aspects of
embryonic development such as glial differentiation,
embryonic axis formation, skeletal and muscle
development, cell migration during early embryogenesis,
apoptosis, and cell proliferation, as well as modulation
of cardiac development. RGS21 is a member of the R4/RGS
subfamily and its mRNA was detected only in sensory
taste cells that express sweet taste receptors and the
taste G-alpha subunit, gustducin, suggesting a potential
role in regulating taste transduction.
Length = 111
Score = 84.3 bits (208), Expect = 9e-20
Identities = 40/111 (36%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 220 LIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQS-KIPAKVKEIFDEFLKAGAPC 278
L+ + GL F ++L+ E+S EN+ FWL + +++ S +I K + I+ EF++A AP
Sbjct: 1 LLANQAGLDAFRTFLKSEFSEENVEFWLACEDFKKTKSSTEIALKAQMIYSEFIQADAPK 60
Query: 279 EVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYK 329
E+NID T + + P+ +D A IY L+ K D +PRF++S+ YK
Sbjct: 61 EINIDFHTRDLISQNISEPTLKCFDEAQSLIYCLMAK-DSFPRFLKSEVYK 110
>gnl|CDD|188664 cd08709, RGS_RGS2, Regulator of G protein signaling (RGS) domain
found in the RGS2 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS2 protein. RGS2 is a member of R4/RGS subfamily of
RGS family, a diverse group of multifunctional proteins
that regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins play
critical regulatory roles as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha-subunits.
The RGS domain controls G-protein signaling by
accelerating the GTPase activity of the G- alpha subunit
which leads to G protein deactivation and promotes
desensitization. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS2 plays
important roles in the regulation of blood pressure and
the pathogenesis of human hypertension, as well as in
bone formation in osteoblasts. Outside of the GPCR
pathway RGS2 interacts with calmodulin, beta- COP,
tubulin, PKG1-alpha, and TRPV6.
Length = 114
Score = 84.3 bits (208), Expect = 1e-19
Identities = 36/114 (31%), Positives = 71/114 (62%), Gaps = 2/114 (1%)
Query: 218 EDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRS-AQSKIPAKVKEIFDEFLKAGA 276
++L+ G+A F ++L+ E+S ENI FWL + +++ + K+ +K K+I+ +F++ A
Sbjct: 2 DELLASKYGVAAFRAFLKSEFSEENIEFWLACEDFKKTKSPQKLTSKAKKIYTDFIEKEA 61
Query: 277 PCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
P E+NID +T ++ + + AA + +Y+ L++N+ YPRF+ S+ Y+
Sbjct: 62 PKEINIDFQTKTLIAQNIQEATSGCFTAAQKRVYS-LMENNSYPRFLESEFYQE 114
>gnl|CDD|188695 cd08741, RGS_RGS10, Regulator of G protein signaling (RGS) domain
found in the RGS10 protein. RGS (Regulator of G-protein
Signaling) domain is an essential part of the RGS10
protein. RGS10 is a member of the RA/RGS subfamily of
RGS proteins family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS10 belong to the R12 RGS subfamily,
which includes RGS12 and RGS14, all of which are highly
selective for G-alpha-i1 over G-alpha-q. RGS10 exists in
2 splice isoforms. RGS10A is specifically expressed in
osteoclasts and is a key component in the RANKL
signaling mechanism for osteoclast differentiation,
whereas RGS10B expressed in brain and in immune tissues
and has been implicated in diverse processes including:
promoting of dopaminergic neuron survival via
regulation of the microglial inflammatory response,
modulation of presynaptic and postsynaptic G-protein
signalling, as well as a possible role in regulation of
gene expression.
Length = 113
Score = 79.3 bits (195), Expect = 6e-18
Identities = 36/115 (31%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 217 IEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRS-AQSKIPAKVKEIFDEFLKAG 275
+E+L++DP G+ F +L+KE+S EN+ FWL + ++ ++++ K KEI+ FL +
Sbjct: 1 LENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSK 60
Query: 276 APCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
A +VN++G++ + L+ P + + I+ L+K D Y RF++SD +
Sbjct: 61 ASSQVNVEGQS-RLNEKILEEPHPLMFQKLQDQIFN-LMKYDSYSRFLKSDLFLK 113
>gnl|CDD|188698 cd08744, RGS_RGS17, Regulator of G protein signaling (RGS) domain
found in the RGS17 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS17 protein, a member of the RZ subfamily of the RGS
protein family. They are a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, the
RGS domain containing proteins are involved in many
crucial cellular processes such as regulation of
intracellular trafficking, glial differentiation,
embryonic axis formation, skeletal and muscle
development, and cell migration during early
embryogenesis. RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha-subunits. Deactivation
of the G-protein signaling controlled by the RGS domain,
which accelerates GTPase activity of the alpha subunit
by hydrolysis of GTP to GDP, results in reassociation of
the alpha-subunit with the beta-gamma-dimer and
inhibition of downstream activity. The RZ subfamily of
RGS proteins includes RGS19 (former GAIP), RGS20, and
its splice variant Ret-RGS. RGS17 is a relatively
non-selective GAP for G-alpha-z and other G-alpha-i/o
proteins. RGS17 blocks dopamine receptor-mediated
inhibition of cAMP accumulation; it also blocks
thyrotropin releasing hormone-stimulated Ca++
mobilization. RGS17, like other members of RZ subfamily,
can act either as a GAP or as G-protein effector
antogonist.
Length = 118
Score = 79.0 bits (194), Expect = 1e-17
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 213 WALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSK-IPAKVKEIFDEF 271
W+ + + ++K P G F +LR EYS EN+ FWL +L++ K I K + I++++
Sbjct: 1 WSQNFDKMMKTPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARLIYEDY 60
Query: 272 LKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
+ +P EV++D R E L +P+ Y+ A IYTL+ + D +PRF+ S YK+
Sbjct: 61 ISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHR-DSFPRFLNSQIYKS 118
>gnl|CDD|188671 cd08716, RGS_RGS13, Regulator of G protein signaling (RGS) domain
found in the RGS13 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS13 protein. RGS13 is member of the R4/RGS subfamily
of the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory roles as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha subunits. The RGS domain controls
G-protein signaling by accelerating the GTPase activity
of the G-alpha subunit which leads to G protein
deactivation and promotes desensitization. As a major
G-protein regulator, RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS13 is predominantly expressed in T
and B lymphocytes and in mast cells, and plays a role in
adaptive immune responses. RGS13 also found in Rgs13,
which is also expressed in dendritic cells and in
neuroendocrine cells of the thymus, gastrointestinal,
and respiratory tracts. Outside of the GPCR pathway,
RGS5 interacts with the PIP3 protein.
Length = 114
Score = 67.6 bits (165), Expect = 8e-14
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 218 EDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAKVKEIFDEFLKAGA 276
E+L+ G + +YL+ E+S ENI FWL ++ A Q K + +++F +++ A
Sbjct: 2 ENLMATKYGPIIYATYLKTEHSDENIEFWLACETYKKIASQRKRISMARKLFASYIQPQA 61
Query: 277 PCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
P E+NID T + ++ P++ +D A +Y + ++ D YPRF+ S Y+
Sbjct: 62 PREINIDSPTRKAIIRNIQEPTQSCFDEAQRIVY-MHMERDSYPRFLESKFYQK 114
>gnl|CDD|128520 smart00224, GGL, G protein gamma subunit-like motifs.
Length = 63
Score = 62.7 bits (153), Expect = 1e-12
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 136 VEDLKKEVDFLKSCLEKTRTKTSLVVESLIPFSETYAEYDAFFTTPNPS-NPWHNDDTTY 194
+ L+KEV+ L+ L + R K S E L+ + E +AE D T P PS NP+ D T+
Sbjct: 1 KDQLRKEVEQLRKELSRERIKVSKAAEELLAYCEQHAEEDPLLTGPPPSKNPFIEDKTSC 60
Query: 195 WLL 197
W+L
Sbjct: 61 WIL 63
>gnl|CDD|188696 cd08742, RGS_RGS12, Regulator of G protein signaling (RGS) domain
found in the RGS12 protein. RGS (Regulator of G-protein
Signaling) domain is an essential part of the RGS12
protein. RGS12 is a member of the RA/RGS subfamily of
RGS proteins family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS12 belong to the R12 RGS subfamily,
which includes RGS10 and RGS14, all of which are highly
selective for G-alpha-i1 over G-alpha-q. RGS12 exist in
multiple splice variants: RGS12s (short) contains the
core RGS/RBD/GoLoco domains, while RGS12L (long) has
additional N-terminal PDZ and PTB domains. RGS12 splice
variants show distinct expression patterns, suggesting
that they have discrete functions during mouse
embryogenesis. RGS12 also may play a critical role in
coordinating Ras-dependent signals that are required for
promoting and maintaining neuronal differentiation.
Length = 115
Score = 60.1 bits (145), Expect = 4e-11
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 218 EDLIKDPTGLAEFTSYLRKEYSHENIRFWLMV---TELRRSAQSKIPAKVKEIFDEFLKA 274
E L++DP G+ F+ +LRKE+S ENI FW + + ++ + +EIF +FL +
Sbjct: 2 ERLLQDPVGVRYFSEFLRKEFSEENILFWQACEYFNHVPAHDKKELSYRAREIFSKFLCS 61
Query: 275 GAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYK 329
A VNID + + L P + I+ L+K D Y RF++S Y+
Sbjct: 62 KATTPVNIDSQA-QLADDILNAPHPDMFKEQQLQIFN-LMKFDSYTRFLKSPLYQ 114
>gnl|CDD|216034 pfam00631, G-gamma, GGL domain. G-protein gamma like domains (GGL)
are found in the gamma subunit of the heterotrimeric G
protein complex and in regulators of G protein signaling
(RGS) proteins. It is also found fused to an inactive
Galpha in the Dictyostelium protein gbqA. G-gamma likely
shares a common origin with the helical N-terminal unit
of G-beta. All organisms that posses a G-beta possess a
G-gamma.
Length = 69
Score = 55.8 bits (135), Expect = 4e-10
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 136 VEDLKKEVDFLKSCLEKTRTKTSLVVESLIPFSETYAEYDAFFTTPNPS---NPWHNDDT 192
LK+E++ LK LE+ R K S + LI + E + D P NPW D
Sbjct: 5 KLRLKREIEQLKEELERERIKVSKACKELIDYCEQRSTKDPLLPGVWPPNKENPWIEKDG 64
Query: 193 TYWLL 197
W+L
Sbjct: 65 CCWIL 69
>gnl|CDD|238024 cd00068, GGL, G protein gamma subunit-like motifs, the
alpha-helical G-gamma chain dimerizes with the G-beta
propeller subunit as part of the heterotrimeric
G-protein complex; involved in signal transduction via
G-protein-coupled receptors.
Length = 57
Score = 55.4 bits (134), Expect = 4e-10
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 136 VEDLKKEVDFLKSCLEKTRTKTSLVVESLIPFSETYAEYDAFFTTP-NPSNPWHNDD 191
V+ LKKEV+ L+ L + R K S L+ + E AE D T P +PSNPW
Sbjct: 1 VDQLKKEVEQLRKELSRERLKVSKAAAELLKYCEQNAENDPLLTGPPSPSNPWIEKK 57
>gnl|CDD|188675 cd08720, RGS_SNX25, Regulator of G protein signaling (RGS) domain
found in the Sorting Nexin 25 (SNX25) protein. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the SNX25 (Sorting Nexin 25) protein,
a member of the RGS protein family. They are a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins regulate many aspects of
embryonic development such as glial differentiation,
embryonic axis formation, skeletal and muscle
development, cell migration during early embryogenesis,
as well as apoptosis, cell proliferation, and modulation
of cardiac development. SNX25 is a member of the
Dopamine receptors (DAR) signalplex and regulates the
trafficking of D1 and D2 DARs.
Length = 110
Score = 50.1 bits (120), Expect = 9e-08
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 220 LIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKVKEIFDEFLKAGAPCE 279
++ + G + +L + S I FW V ELR + +S+ EIF F+ E
Sbjct: 1 ILANVFGRKYLSQFLERMDSQALIGFWEAVEELRSANKSEWHQLGAEIFYTFIVEPTA-E 59
Query: 280 VNIDGRTMERTQTEL---KNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKN 330
+ +D +R + L K P F Y+ + T L+ YP F+ SD YK
Sbjct: 60 IKVDKSLRKRIEQFLLGDKGPEVF-YEVQENVVET--LEEKYYPSFVVSDQYKQ 110
>gnl|CDD|188663 cd08708, RGS_FLBA, Regulator of G protein signaling (RGS) domain
found in the FLBA (Fluffy Low BrlA) protein. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the FLBA (Fluffy Low BrlA) protein.
FLBA is a member of the RGS protein family, a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS proteins play
a critical regulatory role as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha-subunits.
Deactivation of the G-protein signaling controlled by
the RGS domain accelerates the GTPase activity of the
alpha subunit by hydrolysis of GTP to GDP which results
in reassociation of the alpha-subunit with the
beta-gamma-dimer and thereby inhibition of downstream
activity. As a major G-protein regulator, RGS domain
containing proteins are involved in many crucial
cellular processes. The RGS domain of the FLBA protein
antagonizes G protein signaling to block proliferation
and allow development. It is required for control of
mycelial proliferation and activation of asexual
sporulation in yeast.
Length = 148
Score = 49.3 bits (118), Expect = 4e-07
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 33/146 (22%)
Query: 217 IEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTEL------------RRSAQSKIPAKV 264
++ ++KDP F +L KE+ EN+ F+L V E +S+Q+
Sbjct: 2 LDKILKDPGLRYLFREHLEKEFCEENLSFYLEVKEFLKKMTILSKLLDFKSSQAADEDLD 61
Query: 265 KE-------IFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAE---------- 307
+E I++ +L G+PCE+NID R T + D+ AE
Sbjct: 62 RESLAQAYHIYNTYLAPGSPCELNIDHNLRNRITTIMTEKIVGEDDSMAESLQGVEALFE 121
Query: 308 ----HIYTLLLKNDCYPRFIRSDHYK 329
++ L+ D P+F++ Y
Sbjct: 122 EAQNAVFKPLMAGDSVPKFLKQPEYL 147
>gnl|CDD|188674 cd08719, RGS_SNX13, Regulator of G protein signaling (RGS) domain
found in the Sorting Nexin 13 (SNX13) protein. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the SNX13 (Sorting Nexin 13) protein,
a member of the RGS protein family. They are a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins regulate many aspects of
embryonic development such as glial differentiation,
embryonic axis formation, skeletal and muscle
development, cell migration during early embryogenesis,
as well as apoptosis, cell proliferation, and modulation
of cardiac development. The RGS-domain of SNX13 plays a
major role through attenuation of Galphas-mediated
signaling and regulates endocytic trafficking and
degradation of the epidermal growth factor receptor.
Snx13-null mice were embryonic lethal around
midgestation which supports an essential role for SNX13
in mouse development and regulation of endocytosis
dynamics.
Length = 135
Score = 45.9 bits (109), Expect = 6e-06
Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 24/132 (18%)
Query: 221 IKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQ--------SKIPAKVKE------ 266
+ + L+ F +++ + FWL V R SA+ + + +
Sbjct: 2 LVNNVALSYFIDFMQSVGGQAYLFFWLTVEGYRVSAEQQLSELHLRQRGGEHQRSDVYEM 61
Query: 267 -------IFDEFLKAGAPCEVNIDGRTMERTQTELKN--PSRFTYDAAAEHIYTLLLKND 317
I+D++L A V +D +++ L+N PS +D + ++ ++ +++
Sbjct: 62 LRAAALNIYDQYLSEKASPRVPLDDSLVKKLLNRLRNDTPSDLWFDDIQQKVFDIMQEDE 121
Query: 318 -CYPRFIRSDHY 328
YP F +S Y
Sbjct: 122 RFYPAFKKSPAY 133
>gnl|CDD|188676 cd08721, RGS_AKAP2_2, Regulator of G protein signaling (RGS) domain
2 found in the A-kinase anchoring protein, D-AKAP2. The
RGS (Regulator of G-protein Signaling) domain is an
essential part of the D-AKAP2 (A-kinase anchoring
protein), a member of the RGS protein family. They are a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development. D-AKAP2 contains
two RGS domains which play an important role in
spatiotemporal localization of cAMP-dependent PKA
(cyclic AMP-dependent protein kinase) that regulates
many different signaling pathways by phosphorylation of
target proteins. This cd contains the second RGS domain.
Length = 121
Score = 39.3 bits (92), Expect = 8e-04
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 16/112 (14%)
Query: 230 FTSYLRKEYSHENIRFWLMVTELRRSAQSKI----PAKVKE----IFDEFLKAGAPCEVN 281
F Y+ +E + ++FWL + +K + + I+D++ A +
Sbjct: 11 FMEYMEQEGARNLLQFWLAADNFQSQLAAKEGQYDGQQAQNDAMIIYDKYFSLQATEPLG 70
Query: 282 IDGRTMERTQTEL-----KNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHY 328
D +T R + E P ++A T L ++ P F+ S Y
Sbjct: 71 FDDKT--RLEVESNICREGGPLPSCFEAPLLQALTTLEQH-YLPGFLSSQLY 119
>gnl|CDD|188677 cd08722, RGS_SNX14, Regulator of G protein signaling (RGS) domain
found in the Sorting Nexin14 (SNX14) protein. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the SNX14 (Sorting Nexin14) protein, a
member of the RGS protein family. They are a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins regulate many aspects of
embryonic development such as glial differentiation,
embryonic axis formation, skeletal and muscle
development, cell migration during early embryogenesis,
as well as apoptosis, cell proliferation, and modulation
of cardiac development. SNX14 is believed to regulates
membrane trafficking in motor neurons.
Length = 127
Score = 38.9 bits (91), Expect = 0.001
Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 22/126 (17%)
Query: 222 KDPTGLAEFTSYLRKEYSHENIRFWL---------MVTELRRSAQSKIPAKVKEIFDEFL 272
D L F +L++E + ++F L + +L + + + +EI+ +
Sbjct: 3 DDQRLLFPFMQFLKEEGAVHLLQFCLTVEDFNRRILNPDLTDEEKQSLHKEAQEIYKTYF 62
Query: 273 KAGAPCEVNIDGRTMERTQ----------TELKNPSRFTYDAAAEHIYTLLLKNDCYPRF 322
AP ++ +E + +L+ SR ++A EH+Y+LL ++ P F
Sbjct: 63 LPEAPDRIHFPPDIVEEIKQILEGGPEKIVKLRT-SRPLFEAY-EHVYSLL-ESVFCPLF 119
Query: 323 IRSDHY 328
SD Y
Sbjct: 120 CHSDEY 125
>gnl|CDD|188688 cd08734, RGS-like_1, Uncharacterized Regulator of G protein
Signaling (RGS) domain subfamily, child 1. These
uncharacterized RGS-like domains consists largely of
hypothetical proteins. The RGS domain is an essential
part of the Regulator of G-protein Signaling (RGS)
protein family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. As a major G-protein
regulator, the RGS domain containing proteins that are
involved in many crucial cellular processes. RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development. Several RGS
proteins can fine-tune immune responses, while others
play an important role in neuronal signal modulation.
Some RGS proteins are the principal elements needed for
proper vision.
Length = 109
Score = 35.9 bits (83), Expect = 0.010
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 223 DPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAKVKEIFDEFLKAGAPCEVN 281
DP F ++S EN+ F +V E +R + ++ +I+ EF+ + +P ++N
Sbjct: 1 DPNTSPLFGFSAESDFSGENLSFLTLVKEYKRLSNPAEKFTLASKIYKEFISSESPFQIN 60
Query: 282 IDGRTMER 289
I + R
Sbjct: 61 ISSAMLRR 68
>gnl|CDD|188662 cd08707, RGS_Axin, Regulator of G protein signaling (RGS) domain
found in the Axin protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
Axin protein. Axin is a member of the RA/RGS subfamily
of the RGS protein family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS proteins
regulate many aspects of embryonic development such as
glial differentiation, embryonic axis formation, and
skeletal and muscle development. The RGS domain of Axin
is specifically interacts with the heterotrimeric
G-alpha12 protein, but not with closely related
G-alpha13, and provides a unique tool to regulate
G-alpha12-mediated signaling processes. The RGS domain
of Axin also interacts with the tumor suppressor protein
APC (Adenomatous Polyposis Coli) in order to control the
cytoplasmic level of the proto-oncogene, beta-catenin.
Length = 117
Score = 35.5 bits (82), Expect = 0.016
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 220 LIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQS--KIPAKVKEIFDEFLKAGAP 277
L+ D G+ F +YL +E + + FW R+ + S K K I+ ++K
Sbjct: 4 LLDDQDGIELFRTYLEQEGCADLLDFWFACNGFRKMSDSEEKRSKLAKAIYRRYIKDNG- 62
Query: 278 CEVNIDGRTMERTQ---TELKNP-SRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYK 329
V+ + ++ K +D A I T + +N YP F++SD Y
Sbjct: 63 -IVSRQLKPATKSFIKECIKKQQLDPAMFDQAQTEIQTTMEEN-TYPSFLKSDIYL 116
>gnl|CDD|188687 cd08732, RGS-like_4, Uncharacterized Regulator of G protein
Signaling (RGS) domain subfamily, child 4. These
uncharacterized RGS-like domains consists largely of
hypothetical proteins. The RGS domain is an essential
part of the Regulator of G-protein Signaling (RGS)
protein family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. RGS proteins play critical
regulatory role as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. RGS
proteins regulate many aspects of embryonic development
such as glial differentiation, embryonic axis formation,
skeletal and muscle development, cell migration during
early embryogenesis, as well as apoptosis, cell
proliferation, and modulation of cardiac development.
Several RGS proteins can fine-tune immune responses,
while others play an important role in neuronal signal
modulation. Some RGS proteins are the principal elements
needed for proper vision.
Length = 139
Score = 32.4 bits (74), Expect = 0.25
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 265 KEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDA--AAEHIYTLLLKNDCYPRF 322
+ I + ++ +P ++N+ + E NP+ T D A + LLK + YP F
Sbjct: 65 RHIMNTYIHHDSPLQINLSHTMRKEIVEEDDNPNIHTPDLLLNAYNEVLRLLKENFYPEF 124
Query: 323 IRSDHY 328
Y
Sbjct: 125 KNLPKY 130
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms].
Length = 963
Score = 33.6 bits (77), Expect = 0.31
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 22/148 (14%)
Query: 126 RGTGHRKKRSVEDLKKEVDFLKSCLEKTRTKTSLVVESLIPFSETYAEYDAFFTTPN--- 182
G + VEDL++++ +K + V L S+ + + F + N
Sbjct: 547 FVIGSLDQLGVEDLERQLYIIKISFISVKINKRKPVNFLNLSSKHTIDNEYFVSIANDIG 606
Query: 183 ----PSNPWHNDDTTYWLLNSPLVEVPTEKRVRRWALS--IEDLIKDPTGLAEFTSYL-- 234
DD L+ + T + W+LS DL G+A F +YL
Sbjct: 607 EHIIKQLIIGVDDFET-----SLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLAL 661
Query: 235 ---RKEYSHENIRFWLMVTELRRSAQSK 259
+ Y I+ + + R+S +
Sbjct: 662 VTGKDYYKEIAIK---ALQDSRKSVNNN 686
>gnl|CDD|188690 cd08736, RGS_RhoGEF-like, Regulator of G protein signaling (RGS)
domain found in the Rho guanine nucleotide exchange
factor (RhoGEF) protein. The RGS domain found in the
Rho guanine nucleotide exchange factor (RhoGEF) protein
subfamily of the RGS domain containing protein family,
which is a diverse group of multifunctional proteins
that regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RhoGEFs link
signals from heterotrimeric G-alpha12/13 protein-coupled
receptors to Rho GTPase activation, leading to various
cellular responses, such as actin reorganization and
gene expression. The RGS domain of the RhoGEFs has very
little sequence similarity with the canonical RGS domain
of the RGS proteins and therefore is often refered to as
the RH (RGS Homology) domain. The RGS-GEFs subfamily
includes the leukemia-associated RhoGEF (LARG),
p115RhoGEF, and PDZ-RhoGEF. RGS proteins play critical
regulatory role as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development.
Length = 120
Score = 30.7 bits (70), Expect = 0.65
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 224 PTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKV-KEIFDEFLKAGAPCEVNI 282
P LA F Y+ ++ + F+L +T+L + K K EI+ FL+ AP +V +
Sbjct: 4 PAHLAVFLHYVLSQFDPSPLLFYL-ITDLYKQGNPKDMRKWAYEIYSTFLEKNAPLKVKV 62
Query: 283 D 283
Sbjct: 63 P 63
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 30.1 bits (68), Expect = 0.87
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 511 EEGQGQSEGQTGEGQVEGQTEEEGAVGGVPEKNTEVCPWEDEESCKVNTPFV-KKYA 566
E ++ + T E+ + + C WE CK ++ V KK+A
Sbjct: 31 EGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGNT-CKDSSFLVNKKFA 86
>gnl|CDD|153076 cd00716, creatine_kinase_like, Phosphagen (guanidino) kinases such
as creatine kinase and similar enzymes. Eukaryotic
creatine kinase-like phosphagen (guanidino) kinases are
enzymes that transphosphorylate a high energy
phosphoguanidino compound, like phosphocreatine (PCr) in
the case of creatine kinase (CK), which is used as an
energy-storage and -transport metabolite, to ADP,
thereby creating ATP. The substrate binding site is
located in the cleft between the N and C-terminal
domains, but most of the catalytic residues are found in
the larger C-terminal domain. In higher eukaryotes, CKs
are found as tissue-specific (muscle, brain), as well as
compartment-specific (mitochondrial, cytosolic, and
flagellar) isoforms. Mitochondrial and cytoplasmic CKs
are dimeric or octameric, while the flagellar isoforms
are trimers with three CD domains fused as a single
protein chain. CKs are either coupled to glycolysis
(cytosolic form) or oxidative phosphorylation
(mitochondrial form). Besides CK, one of the most
studied members of this family, this model also
represents other phosphagen kinases with different
substrate specificities, like glycocyamine kinase (GK),
lombricine kinase (LK), taurocyamine kinase (TK), and
echinoderm arginine kinase (AK).
Length = 357
Score = 31.9 bits (73), Expect = 0.87
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 48 KQRHGLEEYELEALNNLKRNLANKW-DLVSMQAEEQVRLAKDRKKVDKIV 96
+R +E+ +EAL +L +L K+ L M EEQ +L +D DK V
Sbjct: 133 AERREVEKIAVEALASLDGDLKGKYYPLSGMTEEEQQQLIEDHFLFDKPV 182
>gnl|CDD|219690 pfam07996, T4SS, Type IV secretion system proteins. Members of
this family are components of the type IV secretion
system. They mediate intracellular transfer of
macromolecules via a mechanism ancestrally related to
that of bacterial conjugation machineries.
Length = 195
Score = 29.6 bits (67), Expect = 2.8
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 67 NLANKWDLVSMQAEEQVRLAKDRKK 91
N K ++ M E + RL + +
Sbjct: 170 NEQTKLQMLQMLQEAEERLEEQQAA 194
>gnl|CDD|216651 pfam01697, Glyco_transf_92, Glycosyltransferase family 92. Members
of this family act as galactosyltransferases, belonging
to glycosyltransferase family 92. The aligned region
contains several conserved cysteine residues and several
charged residues that may be catalytic residues. This is
supported by the inclusion of this family in the GT-A
glycosyl transferase superfamily.
Length = 266
Score = 30.1 bits (68), Expect = 2.9
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 2/81 (2%)
Query: 221 IKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKVKEIFDEFLKAGAPCEV 280
PT EF LR + S +P+ + E + + C
Sbjct: 112 RNAPTYGEEFLDLLRS--LPDISIGSYGFRNQWVVKYSFLPSFFENSPSELVTSLYSCRT 169
Query: 281 NIDGRTMERTQTELKNPSRFT 301
G E + + P +
Sbjct: 170 RETGLEQEWHKKCIVRPEKVN 190
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 30.5 bits (69), Expect = 3.0
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 356 SSTSNPSTAIAGLSTAPGPSTSGMGIPGAPMGIPGPPGPSKDVATRALRRGSDRSLTGST 415
SSTS+ S + G + +PGPS S P P P P K R R S + +
Sbjct: 327 SSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRK--RPRPSRAPSSPAASAGR 384
Query: 416 HELAVSARQVAHSHSQSN 433
+ VA + +
Sbjct: 385 PTRRRARAAVAGRARRRD 402
Score = 30.5 bits (69), Expect = 3.5
Identities = 33/191 (17%), Positives = 52/191 (27%), Gaps = 15/191 (7%)
Query: 334 AGKQPCTKKRFPFPFGGGQKKKSSTSNPSTAIAGLSTAPGPSTSGMGIPGAPMGIPGPPG 393
AG C + P + A ST ++ A G P PPG
Sbjct: 57 AGAAACDRFEPP------TGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPG 110
Query: 394 PSKDVATRALRRGSDRSLTGSTHELAVSARQVAHSHSQSNLSDINYPSYQHSFNNNSDLA 453
PS + + +S + + SD A
Sbjct: 111 PSSPDPP---PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAA 167
Query: 454 TPGSPKLASSSPIGLEERKRSITTPTSLTPLRKHSASSAHGAPL---ISVSGVGESASLP 510
+ L SSP EE R+ ++P + P A+++ P + A P
Sbjct: 168 SSRQAALPLSSP---EETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAP 224
Query: 511 EEGQGQSEGQT 521
G +
Sbjct: 225 GRSAADDAGAS 235
>gnl|CDD|115751 pfam07117, DUF1373, Protein of unknown function (DUF1373). This
family consists of several hypothetical proteins which
seem to be specific to Oryzias latipes (Japanese
ricefish). Members of this family are typically around
200 residues in length. The function of this family is
unknown.
Length = 210
Score = 29.8 bits (66), Expect = 3.1
Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 3/108 (2%)
Query: 346 FPFGGGQKKKSSTSNPSTAIAGLSTAPGPSTSGMGIPGAPMGIP---GPPGPSKDVATRA 402
P+ G + S PS +G S+ PG ++G G P P ++ A
Sbjct: 30 PPYTGQLQSAPSYEKPSGQSSGYSSPPGYYSAGTNTAGGSGSPPMWYSASYPEQEPAKPT 89
Query: 403 LRRGSDRSLTGSTHELAVSARQVAHSHSQSNLSDINYPSYQHSFNNNS 450
+R + S GS + S S S + P QH S
Sbjct: 90 YQRPAQSSGYGSYGSVDSSYSGSGSQQSGSQGAQSGAPGSQHQVEQES 137
>gnl|CDD|218635 pfam05556, Calsarcin, Calcineurin-binding protein (Calsarcin).
This family consists of several mammalian
calcineurin-binding proteins. The calcium- and
calmodulin-dependent protein phosphatase calcineurin has
been implicated in the transduction of signals that
control the hypertrophy of cardiac muscle and slow fibre
gene expression in skeletal muscle. Calsarcin-1 and
calsarcin-2 are expressed in developing cardiac and
skeletal muscle during embryogenesis, but calsarcin-1 is
expressed specifically in adult cardiac and slow-twitch
skeletal muscle, whereas calsarcin-2 is restricted to
fast skeletal muscle. Calsarcins represent a novel
family of sarcomeric proteins that link calcineurin with
the contractile apparatus, thereby potentially coupling
muscle activity to calcineurin activation. Calsarcin-3,
is expressed specifically in skeletal muscle and is
enriched in fast-twitch muscle fibres. Like calsarcin-1
and calsarcin-2, calsarcin-3 interacts with calcineurin,
and the Z-disc proteins alpha-actinin, gamma-filamin,
and telethonin.
Length = 273
Score = 29.8 bits (67), Expect = 3.2
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 347 PFGGGQKKKSSTSNPSTAIAGLSTAPGPSTSGMGIPGAPMGI-PGPPGPSKDV 398
P GGQ S S P P+T +G P I PG GP K++
Sbjct: 94 PSQGGQGGNSEGSIPQGDSHQPGQTQ-PNTPDLGSVYNPEAIAPGYGGPLKEI 145
>gnl|CDD|188689 cd08735, RGS_AKAP2_1, Regulator of G protein signaling (RGS) domain
1 found in the A-kinase anchoring protein, D-AKAP2. The
RGS (Regulator of G-protein Signaling) domain is an
essential part of the D-AKAP2 (A-kinase anchoring
protein), a member of the RGS protein family. They are a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development. D-AKAP2 contains
two RGS domains which play an important role in
spatiotemporal localization of cAMP-dependent PKA
(cyclic AMP-dependent protein kinase) that regulates
many different signaling pathways by phosphorylation of
target proteins. This cd contains the first RGS domain.
Length = 171
Score = 29.3 bits (66), Expect = 3.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 216 SIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPA 262
++E ++ D + L F ++ + I+FWL + +A S+I A
Sbjct: 4 TLEQILHDNSALPYFIQFMETRRAEHLIKFWLEAESFKSAAWSRIRA 50
>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated.
Length = 174
Score = 29.2 bits (66), Expect = 3.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 79 AEEQVRLAKDRKKVDKIVADSQERA 103
AE Q +LA+ +++ ++I AD++ RA
Sbjct: 74 AEAQQKLAQAQQEAERIRADAKARA 98
>gnl|CDD|192074 pfam08573, SAE2, DNA repair protein endonuclease SAE2/CtIP
C-terminus. SAE2 is a protein involved in repairing
meiotic and mitotic double-strand breaks in DNA. It has
been shown to negatively regulate DNA damage checkpoint
signalling. SAE2 is homologous to the CtIP proteins in
mammals and an homologous protein in plants. Crucial
sequence motifs that are highly conserved are the CxxC
and the RHR motifs in this C-terminal part of the
protein. It is now known to be an endonuclease. In
budding yeast, genetic evidence suggests that the SAE2
protein is essential for the processing of hairpin DNA
intermediates and meiotic double-strand breaks by
Mre11/Rad50 complexes. SAE2 binds DNA and exhibits
endonuclease activity on single-stranded DNA
independently of Mre11/Rad50 complexes, but hairpin DNA
structures are cleaved cooperatively in the presence of
Mre11/Rad50 or Mre11/Rad50/Xrs2. Hairpin structures are
not processed at the tip by SAE2 but rather at
single-stranded DNA regions adjacent to the hairpin. The
catalytic activities of SAE2 are important for its
biological functions.
Length = 93
Score = 27.8 bits (62), Expect = 4.2
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 59 EALNNLKRNLANKWDLVSMQAEEQVRLAKDRKKVDKIVADSQERAYWRVHRPPPG 113
EAL L+ N +L +M+AEE+ L K+ KK S+ R + + PPG
Sbjct: 31 EALARLEEKNGNFHNLPTMKAEEREELLKEAKKKKLANTFSRHRHHHKRPDTPPG 85
>gnl|CDD|188685 cd08730, RGS-like_3, Uncharacterized Regulator of G protein
Signaling (RGS) domain subfamily, child 3. These
uncharacterized RGS-like domains consists largely of
hypothetical proteins. The RGS domain is an essential
part of the Regulator of G-protein Signaling (RGS)
protein family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. As a major G-protein
regulator, the RGS domain containing proteins that are
involved in many crucial cellular processes. RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development. Several RGS
proteins can fine-tune immune responses, while others
play an important role in neuronal signal modulation.
Some RGS proteins are the principal elements needed for
proper vision.
Length = 165
Score = 28.9 bits (64), Expect = 4.7
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 226 GLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAK---VKEIFDEFLKAGAP 277
G+ F +L + ++FWL V RR + + + + ++L +P
Sbjct: 7 GMRRFRQFLAGTLGEDYLKFWLDVEMYRRDYKFGEIKRLDFFRSVVTKYLLKNSP 61
>gnl|CDD|225586 COG3044, COG3044, Predicted ATPase of the ABC class [General
function prediction only].
Length = 554
Score = 29.5 bits (66), Expect = 5.0
Identities = 17/63 (26%), Positives = 25/63 (39%)
Query: 368 LSTAPGPSTSGMGIPGAPMGIPGPPGPSKDVATRALRRGSDRSLTGSTHELAVSARQVAH 427
+ G GMGIP I G K A+ RG D + G E V+ ++A
Sbjct: 227 IELPNGKEVVGMGIPQGITLITGGNFHGKTTLLTAIERGVDNHIPGDGRERVVTDVKLAK 286
Query: 428 SHS 430
+ +
Sbjct: 287 AEA 289
>gnl|CDD|147982 pfam06112, Herpes_capsid, Gammaherpesvirus capsid protein. This
family consists of several Gammaherpesvirus capsid
proteins. The exact function of this family is unknown.
Length = 148
Score = 28.3 bits (63), Expect = 5.8
Identities = 25/123 (20%), Positives = 33/123 (26%), Gaps = 12/123 (9%)
Query: 293 ELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDH---YKNLLQA--GKQPCTKKRFPFP 347
N S Y A + L+ CY +++R H K LQA G P T
Sbjct: 32 PQNNMSDAEYAEAKRNYLVFLIAQHCYDQYVRRMHGIRRKKHLQALRGAGPQTS---SSI 88
Query: 348 FGGGQKKKSSTSNPSTAIAGLSTAPGPSTSGMGIPGAPMGIPGPPGPSKDVATRALRRGS 407
SS S LS + G + S G S
Sbjct: 89 GSALSASSSSASGVPGGANQLSGSSGSALS----SGPGSLSSSSSLSGSGAGAGDTAPSS 144
Query: 408 DRS 410
+
Sbjct: 145 SKK 147
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 28.4 bits (64), Expect = 6.3
Identities = 10/51 (19%), Positives = 27/51 (52%)
Query: 53 LEEYELEALNNLKRNLANKWDLVSMQAEEQVRLAKDRKKVDKIVADSQERA 103
L+E + + ++L K + ++ AE + L + R++ +I+ +++ A
Sbjct: 35 LDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEA 85
>gnl|CDD|215182 PLN02321, PLN02321, 2-isopropylmalate synthase.
Length = 632
Score = 29.2 bits (65), Expect = 7.7
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 356 SSTSNPSTAIAGLSTAPGPSTSGMGIPGAPMGIPGP-PGPSKDVATRALRRGSDRS 410
SS + S A + + P P+ S P + P S +A+RA +
Sbjct: 8 SSATAASPAKSLSAFTPAPTRSSASSARFPAFLARPAAARSPSLASRASSALAASP 63
>gnl|CDD|164858 PHA01622, PHA01622, CRISPR-associated Cas4-like protein.
Length = 204
Score = 28.4 bits (63), Expect = 7.9
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 235 RKEYSHENIRFWLMVTELRRSAQSKIPAKVKEIFDEFLKAGAPCEV--NIDGRTME---- 288
RK Y NI F + E+ + ++++ F E L E+ I+G +
Sbjct: 30 RKSYLARNIEFERGINEIYLDLGEQYHERIEQYFKEKLNCQTEVEIKDEIEGIKISGRID 89
Query: 289 ----RTQTELKNPSRFTYDAAAEHIYTLLL 314
E+K S + H+Y + L
Sbjct: 90 IVCNNDLLEIKTISYNYFQVKEYHLYQVAL 119
>gnl|CDD|187783 cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily
protein Cas6. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas6 is an endoribonuclease that generates crRNAs,
predicted subunit of Cascade complex; RAMP superfamily
protein; Possesses double RRM/ferredoxin fold.
Length = 190
Score = 28.2 bits (63), Expect = 8.9
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 43 RSLRNKQRHGLEEYELEALNNLKRNLANKWDLVSMQAEEQVRLAKDRKKVDKI 95
R+ + ++ + L NL K++ A+ +V + R K +K+
Sbjct: 89 RTKGEENKYYYVPDDEPFPELLFENLLKKYNAFGGLADGEVEIKNFRIKSEKV 141
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.130 0.387
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,925,835
Number of extensions: 2795561
Number of successful extensions: 2354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2290
Number of HSP's successfully gapped: 83
Length of query: 571
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 469
Effective length of database: 6,413,494
Effective search space: 3007928686
Effective search space used: 3007928686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (27.7 bits)