RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15721
(571 letters)
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP
domain, DHEX domain, GGL domain, propeller, signaling
protein; 1.95A {Mus musculus}
Length = 424
Score = 363 bits (932), Expect = e-121
Identities = 132/322 (40%), Positives = 195/322 (60%), Gaps = 4/322 (1%)
Query: 17 FTIPYYWPWQHRQCPDNVEYAIYLEKRSLRNKQRHGLEEYELEALNNLKRNLANKWDLVS 76
F PY+WP Q ++ +YAIYL KR+++ K LEEYE E + L + + KWD V
Sbjct: 105 FQTPYFWPTQQW-PAEDTDYAIYLAKRNIKKKGI--LEEYEKENYDFLNKKINYKWDFVI 161
Query: 77 MQAEEQVRLAKDRKKVDKIVADSQERAYWRVHRPPPGCTSSLEPIPTCMRGTGHRKKRSV 136
MQA+EQ R K+R K D+ D QE+AYW VHR PPG + L+ + KK++V
Sbjct: 162 MQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTV 221
Query: 137 EDLKKEVDFLKSCLEKTRTKTSLVVESLIPFSETYAEYDAFFTTPNPSNPWHNDDTTYWL 196
++KE+ + + L ++ K+S+ + ++ +SE ++ DA + PSNPW DDT +W
Sbjct: 222 TAVRKEIMYYQQALMRSTVKSSVSLGGIVKYSEQFSSNDAIMSGCLPSNPWITDDTQFWD 281
Query: 197 LNSPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA 256
LN+ LVE+PT+ RV RWA + +LI+DP G F +L+KE+S EN+ FW +L+
Sbjct: 282 LNAKLVEIPTKMRVERWAFNFSELIRDPKGRQSFQYFLKKEFSGENLGFWEACEDLKYGD 341
Query: 257 QSKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKN 316
QSK+ K +EI+ FL GA +NIDG+TM+ T L++P R+ DAA HIY L+K
Sbjct: 342 QSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITVKGLRHPHRYVLDAAQTHIYM-LMKK 400
Query: 317 DCYPRFIRSDHYKNLLQAGKQP 338
D Y R+++S YK +L +P
Sbjct: 401 DSYARYLKSPIYKEMLAKAIEP 422
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD,
GAP, signaling protein; 1.94A {Bos taurus} SCOP:
a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Length = 147
Score = 170 bits (432), Expect = 8e-51
Identities = 65/145 (44%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 194 YWLLNSPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELR 253
+W LN+ LV++PT+ RV RWA + +LI+DP G F +LRKE+S EN+ FW +L+
Sbjct: 2 FWDLNAKLVDIPTKMRVERWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLK 61
Query: 254 RSAQSKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLL 313
QSK+ K +EI+ FL GA +NIDG+TM+ T LK+P R+ DAA HIY L
Sbjct: 62 YGDQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYM-L 120
Query: 314 LKNDCYPRFIRSDHYKNLLQAGKQP 338
+K D Y R+++S YK +L +P
Sbjct: 121 MKKDSYARYLKSPIYKEMLAKAIEP 145
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural
genomics, struct genomics consortium, B-cell activation,
phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Length = 145
Score = 158 bits (400), Expect = 4e-46
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 198 NSPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQ 257
+S +V + V +W+ S+E L+ + TG F S+L+ E+S ENI FWL + +++
Sbjct: 7 SSKSKDVLSAAEVMQWSQSLEKLLANQTGQNVFGSFLKSEFSEENIEFWLACEDYKKTES 66
Query: 258 SKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKND 317
+P K +EI+ F+ + A ++NID RT E T ++K P+ +D A + IYT L++ D
Sbjct: 67 DLLPCKAEEIYKAFVHSDAAKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYT-LMEKD 125
Query: 318 CYPRFIRSDHYKNLLQ 333
YPRF++SD Y NLL
Sbjct: 126 SYPRFLKSDIYLNLLN 141
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of
G-protein signaling 7, GTPase-activ proteins (GAP),
structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A
2es0_A
Length = 146
Score = 157 bits (399), Expect = 5e-46
Identities = 59/142 (41%), Positives = 96/142 (67%), Gaps = 1/142 (0%)
Query: 202 VEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIP 261
++ P+++RV+RW +++ +KDP G +F +L E+S EN+RFWL V +L++ ++P
Sbjct: 2 MKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIKEVP 61
Query: 262 AKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPR 321
++V+EI+ EFL GAP +N+D ++ ++T +K P R+T++ A EHIY L+K+D YPR
Sbjct: 62 SRVQEIWQEFLAPGAPSAINLDSKSYDKTTHNVKEPGRYTFEDAQEHIYK-LMKSDSYPR 120
Query: 322 FIRSDHYKNLLQAGKQPCTKKR 343
FIRS Y+ LLQA K+
Sbjct: 121 FIRSSAYQELLQAKKKSGNSMD 142
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein,
structural genomics, structura genomics consortium, SGC,
signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B*
2bt2_A
Length = 155
Score = 157 bits (397), Expect = 1e-45
Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Query: 182 NPSNPWHNDDTTYWLLNSPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHE 241
+ ++ + +++ + + RWA S + L+ G+A F ++L+ E+S E
Sbjct: 8 SSGVDLGTENLYFQ----SMLKRLSTEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEE 63
Query: 242 NIRFWLMVTELRRSA-QSKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRF 300
N+ FWL E +++ +K+ +K IF+EF+ AP EVNID +T E T+ L+ PS
Sbjct: 64 NLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLT 123
Query: 301 TYDAAAEHIYTLLLKNDCYPRFIRSDHYKNLL 332
+D A +++ L++ D YPRF+RS Y +LL
Sbjct: 124 CFDQAQGKVHS-LMEKDSYPRFLRSKMYLDLL 154
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein,
structural genomics, structural genomics consortium,
SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Length = 151
Score = 154 bits (389), Expect = 2e-44
Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 204 VPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRS-AQSKIPA 262
+ + + +W S + L+ GL FT +L+ E+S ENI FW+ + ++S +I
Sbjct: 2 MVSPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHL 61
Query: 263 KVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRF 322
K K I+++F++ AP EVN+D T E + P+ ++DAA +Y L++ D Y RF
Sbjct: 62 KAKAIYEKFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQ-LMEQDSYTRF 120
Query: 323 IRSDHYKNLLQAGKQ-PCTKKRFPFPF 348
++SD Y +L++ Q P +R F
Sbjct: 121 LKSDIYLDLMEGRPQRPTNLRRRSRSF 147
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 140
Score = 147 bits (372), Expect = 3e-42
Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 205 PTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAK 263
+ + +W S + L+ GL FT +L+ E+S ENI FW+ + ++S +I K
Sbjct: 7 GSPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLK 66
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
K I+++F++ AP EVN+D T E + P+ ++DAA +Y L++ D Y RF+
Sbjct: 67 AKAIYEKFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQ-LMEQDSYTRFL 125
Query: 324 RSDHYKNLLQAGKQ 337
+SD Y +L+
Sbjct: 126 KSDIYLDLMSGPSS 139
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human
RGS17(Z2), regulator of G-protein signali opioid
receptor interacting protein; 2.40A {Homo sapiens}
Length = 158
Score = 147 bits (371), Expect = 7e-42
Identities = 44/148 (29%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 190 DDTTYWLLNSPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMV 249
++ + +N PT + V W+ + + ++K P G F +LR EYS EN+ FWL
Sbjct: 16 ENLYFQSMN------PTAEEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLAC 69
Query: 250 TELRRSAQS-KIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEH 308
+L++ I K + I+++++ +P EV++D R E L +P+ Y+ A
Sbjct: 70 EDLKKEQNKKVIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQ 129
Query: 309 IYTLLLKNDCYPRFIRSDHYKNLLQAGK 336
IYT L+ D +PRF+ S YK+ +++
Sbjct: 130 IYT-LMHRDSFPRFLNSQIYKSFVESTA 156
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics,
structural genomics consortium, SGC, signaling protein;
2.30A {Homo sapiens} PDB: 2v4z_B*
Length = 146
Score = 145 bits (366), Expect = 3e-41
Identities = 37/133 (27%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 205 PTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAK 263
P+ + + W+ + ++L+ GLA F ++L+ E+ ENI FWL + +++ K+ +K
Sbjct: 15 PSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSK 74
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
++I+ +F++ AP E+NID +T ++ + + A + +Y+ L++N+ YPRF+
Sbjct: 75 ARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYS-LMENNSYPRFL 133
Query: 324 RSDHYKNLLQAGK 336
S+ Y++L + +
Sbjct: 134 ESEFYQDLCKKPQ 146
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain,
signaling protein inhibitor; 2.30A {Homo sapiens}
Length = 127
Score = 143 bits (361), Expect = 8e-41
Identities = 49/126 (38%), Positives = 79/126 (62%), Gaps = 2/126 (1%)
Query: 208 KRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-SAQSKIPAKVKE 266
+ +W S+E L+ GLA F ++LR E+S EN+ FWL + ++ +QSK+ +K K+
Sbjct: 2 EEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKK 61
Query: 267 IFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSD 326
IF E++ A EVN+D T E T+ L++ +R +D A + I+ L++ D YPRF+RSD
Sbjct: 62 IFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFG-LMEKDSYPRFLRSD 120
Query: 327 HYKNLL 332
Y +L+
Sbjct: 121 LYLDLI 126
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 150
Score = 143 bits (363), Expect = 9e-41
Identities = 45/131 (34%), Positives = 79/131 (60%), Gaps = 2/131 (1%)
Query: 205 PTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-SAQSKIPAK 263
+ +W S++ L+++ GLA F S+L+ E+S EN+ FW+ + ++ + +K+ K
Sbjct: 17 TSLDEALQWRDSLDKLLQNNYGLASFKSFLKSEFSEENLEFWIACEDYKKIKSPAKMAEK 76
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
K+I++EF++ AP EVNID T + T L PS ++D A + I+ L++ D PRF+
Sbjct: 77 AKQIYEEFIQTEAPKEVNIDHFTKDITMKNLVEPSLSSFDMAQKRIHA-LMEKDSLPRFV 135
Query: 324 RSDHYKNLLQA 334
RS+ Y+ L+
Sbjct: 136 RSEFYQELISG 146
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G
protein, signaling protein regulation; NMR {Homo
sapiens} SCOP: a.91.1.1
Length = 152
Score = 142 bits (360), Expect = 2e-40
Identities = 49/141 (34%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Query: 197 LNSPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA 256
++ +P+ + V+ WA S + L+ P G + F ++LR EYS EN+ FWL EL+ A
Sbjct: 4 ISGGGGGIPSPEEVQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELKAEA 63
Query: 257 -QSKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLK 315
Q + K + I+++++ +P EV++D R E +++ PS T+D A IYT L+
Sbjct: 64 NQHVVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYT-LMH 122
Query: 316 NDCYPRFIRSDHYKNLLQAGK 336
D YPRF+ S Y+ LL
Sbjct: 123 RDSYPRFLSSPTYRALLPWVD 143
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein
signalling domain, structural genomics, structural
genomics consortium, SGC; NMR {Homo sapiens}
Length = 154
Score = 142 bits (358), Expect = 4e-40
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Query: 204 VPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR---SAQSKI 260
+ E+ V WALS E L++DP GLA FT +L+KE+S EN+ FW ++ S ++
Sbjct: 2 MTEEQPVASWALSFERLLQDPLGLAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQL 61
Query: 261 PAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYP 320
+ + I+ EFL + A VNID + + L P + A I+ L+K D Y
Sbjct: 62 AQEARNIYQEFLSSQALSPVNIDRQAWLGEE-VLAEPRPDMFRAQQLQIFN-LMKFDSYA 119
Query: 321 RFIRSDHYKNLLQAGKQPCTKKR 343
RF++S Y+ L A + +
Sbjct: 120 RFVKSPLYRECLLAEAEGRPLRE 142
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding
protein G(K) subunit A; RGS, heterotrimeric G protein,
signall complex; HET: GDP; 2.71A {Homo sapiens} PDB:
2i59_A
Length = 153
Score = 141 bits (356), Expect = 7e-40
Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 189 NDDTTYWLLNSPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLM 248
+ S + K +WA S+E+L++DP G+ F +L+KE+S EN+ FWL
Sbjct: 7 PPSDIHDSDGSSSSSHQSLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLA 66
Query: 249 VTELRRSA-QSKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAE 307
+ ++ ++++ K KEI+ FL + A +VN++G++ + L+ P + +
Sbjct: 67 CEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQVNVEGQSRLNEK-ILEEPHPLMFQKLQD 125
Query: 308 HIYTLLLKNDCYPRFIRSDHYKNLLQA 334
I+ L+K D Y RF++SD + +
Sbjct: 126 QIFN-LMKYDSYSRFLKSDLFLKHKRT 151
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 149
Score = 140 bits (354), Expect = 1e-39
Identities = 40/134 (29%), Positives = 77/134 (57%), Gaps = 3/134 (2%)
Query: 205 PTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAK 263
+ K +WA S+E+L++DP G+ F +L+KE+S EN+ FWL + ++ ++++ K
Sbjct: 7 GSLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEK 66
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
KEI+ FL + A +VN++G++ + L+ P + + I+ L+K D Y RF+
Sbjct: 67 AKEIYMTFLSSKASSQVNVEGQSRLNEKI-LEEPHPLMFQKLQDQIFN-LMKYDSYSRFL 124
Query: 324 RSDHYKNLLQAGKQ 337
+SD + + ++
Sbjct: 125 KSDLFLKHKRTEEE 138
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase
activating protein, heterotrimeric G-protein,
lipoprotein, palmitate, phosphoprotein; 1.89A {Mus
musculus} PDB: 3c7k_B* 2ik8_B*
Length = 137
Score = 140 bits (353), Expect = 2e-39
Identities = 45/128 (35%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 205 PTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-SAQSKIPAK 263
+ V W S + L+ G+A F ++L+ E+S EN+ FWL E ++ + +K+ ++
Sbjct: 10 SFSEDVLGWRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASR 69
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
IFDE++++ AP EVNID T E T+T L+ + +D A T L++ D YPRF+
Sbjct: 70 AHHIFDEYIRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRT-LMEKDSYPRFL 128
Query: 324 RSDHYKNL 331
+S Y++L
Sbjct: 129 KSPAYRDL 136
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 155
Score = 137 bits (346), Expect = 2e-38
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 5/136 (3%)
Query: 205 PTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR---SAQSKIP 261
E+RV WA+S E L++DP G+ F+ +LRKE+S ENI FW + ++
Sbjct: 7 GRERRVASWAVSFERLLQDPVGVRYFSDFLRKEFSEENILFWQACEYFNHVPAHDKKELS 66
Query: 262 AKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPR 321
+ +EIF +FL + A VNID + + L+ P + I+ L+K D Y R
Sbjct: 67 YRAREIFSKFLCSKATTPVNIDSQA-QLADDVLRAPHPDMFKEQQLQIFN-LMKFDSYTR 124
Query: 322 FIRSDHYKNLLQAGKQ 337
F++S Y+ + A +
Sbjct: 125 FLKSPLYQECILAEVE 140
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal
transduction/regulator), GTP-binding, GTPase activating
protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP:
a.91.1.1 PDB: 1ezt_A 1ezy_A
Length = 205
Score = 137 bits (346), Expect = 8e-38
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 176 AFFTTPNPSNPWHNDDTTYWLLNSPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLR 235
F + S + + + +++ V++WA S+E+LI GLA F ++L+
Sbjct: 24 GFLLQKSDSCEHSSSHSKKD--KVVTCQRVSQEEVKKWAESLENLINHECGLAAFKAFLK 81
Query: 236 KEYSHENIRFWLMVTELRRSA-QSKIPAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTEL 294
EYS ENI FW+ E ++ SK+ K K+I++EF+ A EVN+D T E T +
Sbjct: 82 SEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREETSRNM 141
Query: 295 KNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKNLLQAGKQPCTKKRFPFPFGGGQKK 354
P+ +D A + I+ L++ D Y RF++S Y +L K++ G
Sbjct: 142 LEPTITCFDEAQKKIFN-LMEKDSYRRFLKSRFYLDLTNPSSCGAEKQK-----GAKSSA 195
Query: 355 KSSTSNPSTA 364
++ P A
Sbjct: 196 DCTSLVPQCA 205
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A
{Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Length = 147
Score = 126 bits (317), Expect = 2e-34
Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 9/138 (6%)
Query: 208 KRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELR-----RSAQSKIPA 262
+WA S+ L+ D G++ F ++L++E + + FW T R S + K
Sbjct: 7 PPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLK 66
Query: 263 KVKEIFDEFLKAGAPC---EVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCY 319
+ I+ +++ + ++ + + +D A I ++ + Y
Sbjct: 67 LARAIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQLIDPAMFDQAQTEIQA-TMEENTY 125
Query: 320 PRFIRSDHYKNLLQAGKQ 337
P F++SD Y + G +
Sbjct: 126 PSFLKSDIYLEYTRTGSE 143
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 1e-08
Identities = 61/418 (14%), Positives = 119/418 (28%), Gaps = 120/418 (28%)
Query: 1 MRDENEVLEEVEGVQEFT-----IPYYWPWQ--HRQCPD-NVEYAIYLEKRSLRNKQRHG 52
+ + E E VQ+F I Y + + ++ +Y+E+R
Sbjct: 71 LLSKQE-----EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 53 LEEYE---LEALNNLKRNLANKWDLVSMQAEEQVR-----------LAKDRKKVDKIVAD 98
+Y L+ L++ L ++ + V +A D K+
Sbjct: 126 FAKYNVSRLQPYLKLRQALLE------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 99 SQERAYW----RVHRP---------------PPGCT--SSLEPIPTCMRGTGHRKKR--- 134
+ +W + P P + I + +R
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 135 ------------SVEDLKKEVD-FLKSC--LEKTRTKTSLVVESLIPFSETYAEYDAFFT 179
+V++ K + F SC L TR K V + L + T+ D
Sbjct: 240 SKPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQ--VTDFLSAATTTHISLD---- 292
Query: 180 TPNPSNPWHNDDTTYWL---LNSPLVEVPTE-KRVRRWALS-IEDLIKDPTGLAEFTSYL 234
+ S D+ L L+ ++P E LS I + I+D + ++
Sbjct: 293 --HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 235 RKEYSHENIRFWLMV---TELRRSAQS--------KIPAKVKEIFDEFLKAGAPCEVNID 283
+ I L V E R+ IP + + ++
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF----------DVI 400
Query: 284 GRTMERTQTEL-------KNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKNLLQA 334
+ +L K P T I ++ L+ + H ++++
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTI-----SIPSIYLELKVKLENEYALH-RSIVDH 452
Score = 45.2 bits (106), Expect = 6e-05
Identities = 51/348 (14%), Positives = 91/348 (26%), Gaps = 107/348 (30%)
Query: 217 IEDLIKDPTGLAEFTSYLRKEYSHENIR--FWLMVTELRRSAQSKIPAKVKEIFDEFLKA 274
++D+ K E + + + FW + S Q ++ V++ +E L+
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL-----LSKQEEM---VQKFVEEVLR- 88
Query: 275 GAPCEVNID-GRTMERTQTELKNPSRFT--YDAAAEHIYTLLLKNDCY-PRFI-RSDHYK 329
I+ M +TE + PS T Y + +Y N + + R Y
Sbjct: 89 -------INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN---DNQVFAKYNVSRLQPYL 138
Query: 330 NLLQA------------------GKQ-----PCTKKRF--PFPFGG-----GQKKKSSTS 359
L QA GK C + F
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---- 194
Query: 360 NPSTAIAGLST----APGPSTSGMGIPGAPMGIPGPPGPSKDVATRALRRGSDRSLTGST 415
P T + L TS + R +
Sbjct: 195 -PETVLEMLQKLLYQIDPNWTSR------SDHSSNIKLRIHSIQAELRRLLKSKPYENC- 246
Query: 416 HELAVSARQVAHSHSQSNLSDINYPSYQHSFNNNSD-LATPGSPKLASS------SPIGL 468
L V L ++ ++FN + L T ++ + I L
Sbjct: 247 --LLV-------------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 469 EERKRSITTPTSLTPLRK----------HSASSAHGAPLISVSGVGES 506
+ ++T + L K + + P +S + ES
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PRR-LSIIAES 336
Score = 29.8 bits (66), Expect = 3.4
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 45/131 (34%)
Query: 16 EFTIPY---YWPWQ---HRQCPDNVEYA-----IYLEKRSLRNKQRHG------------ 52
+ PY Y+ H + ++ E ++L+ R L K RH
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 53 ----LEEYE---------LEAL-NNLKRNLANKWDLVSMQAEEQVRLAKDRKKVDKIVAD 98
L+ Y+ E L N + L + EE + +K + +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFL--------PKIEENLICSKYTDLLRIALMA 574
Query: 99 SQERAYWRVHR 109
E + H+
Sbjct: 575 EDEAIFEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 4e-08
Identities = 85/528 (16%), Positives = 142/528 (26%), Gaps = 209/528 (39%)
Query: 142 EVDFLK--------SCLEKTRTKTSLVVESLIPFSETYAEYDAFFTTPNPSNPWHNDDTT 193
E +L+ + L + T + + LI + Y A P + N
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELI---KNY--ITARIMAKRPFDKKSN---- 142
Query: 194 YWLLNSPLVEVPTEKRVRRWAL-----------------------SIEDLIKDPTG---- 226
S L E + A+ + DLIK
Sbjct: 143 -----SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 227 LAEFTSYLRKEYSHE-NIRFWLMVTELRRSAQSKIPAKVKEIFDEFLKAGAP-------- 277
L T K ++ NI WL S P ++L P
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWL-------ENPSNTPD------KDYL-LSIPISCPLIGV 243
Query: 278 ---CEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLL-----KNDCYPRFIRSDHYK 329
+ + + T EL++ + A H L+ + D + F +
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLK----GATGHSQGLVTAVAIAETDSWESF-----FV 294
Query: 330 NLLQAGKQPCTKKRFPFPFGG--GQKKKSSTSNPSTAIAGLSTAPGPSTSGMGIPGAPM- 386
++ +A F F G + +TS P + + + G+P +PM
Sbjct: 295 SVRKA-------ITVLF-FIGVRCYEAYPNTSLPPSILED------SLENNEGVP-SPML 339
Query: 387 ---GIP--------------GPP------------------GPSKDVA--TRALRR---- 405
+ P GP + + LR+
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 406 ---------GSDRSLTGSTHELAVSARQVAHSH-------------SQSNL----SDINY 439
S+R L S L V++ HSH ++N+ DI
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASP--FHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 440 PSYQHSFNNNSDLATPGS---PKLAS---SSPIGLEERKRSITTPTSLTPLRKHSASSAH 493
P Y + SDL ++ P+ E TT T H
Sbjct: 458 PVY--DTFDGSDLRVLSGSISERIVDCIIRLPVKWET-----TTQFKAT----------H 500
Query: 494 ----GAPLISVSGVGESASLPEEGQGQSEGQTGEGQVEGQTEEEGAVG 537
G P SG+G ++G G G ++ +++ G
Sbjct: 501 ILDFG-PG-GASGLGVLTHRNKDGTGVRVIVAGT--LDINPDDD--YG 542
Score = 48.1 bits (114), Expect = 8e-06
Identities = 72/411 (17%), Positives = 117/411 (28%), Gaps = 111/411 (27%)
Query: 216 SIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKVKEIFDEFLK-A 274
S+E ++ PT S L+++++ + A P E+ +FL
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKI------LPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 275 GAPCEVNIDGRTMERTQTELKNPSRF--TYDAAAE-H--IYTLLLKND----CYPRFIRS 325
+ E + G+ + L F Y + H LL +ND I++
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLT---EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 326 DHYKNLLQAGKQPCTKKRFPFPFGGGQKKKSSTSNPSTAIAGLSTAPGPSTSGMGIPGAP 385
Y K+P KK F + + AI G G G
Sbjct: 126 --YITARIMAKRPFDKKSNSALFRAVGEGNAQL----VAIFG----------GQGNTDDY 169
Query: 386 MGIPGPPGPSKDVATRALRRGSDRSLTGSTHELAVSARQVAHSHSQSNLSDINYPSYQHS 445
++ LR +L + + ++ L +
Sbjct: 170 F---------EE-----LRDLYQTY-HVLVGDLIKFSAETLSELIRTTLDAEKV--FTQG 212
Query: 446 FN-----NNSDLATPGSPKLAS---SSP-IGLEERKRSITTPTSL--TP--LRKH-SASS 491
N N TP L S S P IG+ + + T L TP LR + ++
Sbjct: 213 LNILEWLENPS-NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 492 AHG-----APLISVSGVGES-------------------------ASLPEEGQGQSEGQT 521
H A I+ + ES SLP S +
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL-EN 330
Query: 522 GEGQ------VEGQTEE--EGAVGGVPEKNTEVCPWEDEESCKVNTP--FV 562
EG + T+E + V N+ + + E VN V
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKT---NSHLPAGKQVEISLVNGAKNLV 378
Score = 34.3 bits (78), Expect = 0.14
Identities = 45/321 (14%), Positives = 85/321 (26%), Gaps = 118/321 (36%)
Query: 52 GLEEYELEALNNLKRNLANK-WDLVSMQAEEQVRLAKDRKKVDKIVADSQERAYWRVHRP 110
G++ Y+ A W+ +A+ + +D IV ++ +H
Sbjct: 1632 GMDLYK-------TSKAAQDVWN----RADNHFKDTYGFSILD-IVINNPVNLT--IHFG 1677
Query: 111 PPGCTSSLEPIPTCMRGTGHRKKRSVEDLKKEVDF-LKSC--------LEKTR------T 155
E + T K E + KE++ S L T+ T
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 156 KTSLVV------ESLIPFSETYA-----EYDAFFTTPNPSNPWHNDDTTYWLLNSPLV-- 202
+ LIP T+A EY A L
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAA------------------------LASL 1773
Query: 203 -EVPTEKRVRRWALSIEDLIKDPT----GLAEFTSYLRKEYSHEN-----IRFWLMVTEL 252
+V +SIE L++ G+ + R E N I +
Sbjct: 1774 ADV----------MSIESLVE--VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 253 RRSAQSKIPAKVKEIFDEFLKAGAPCEV---NIDGRT---------MERTQTELKN---- 296
+ A + +V + + G E+ N++ + ++ L
Sbjct: 1822 SQEALQYVVERVGK------RTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 297 -------PSRFTYDAAAEHIY 310
+ + H++
Sbjct: 1876 KIDIIELQKSLSLEEVEGHLF 1896
Score = 33.5 bits (76), Expect = 0.21
Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 55/152 (36%)
Query: 34 VEYAIY--LEKRSLRNKQR----HGLEEY----------ELEALNNL--KRNLA------ 69
+E A + L+ + L H L EY +E+L + R +
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVP 1798
Query: 70 ---NKWDLVSMQA--EEQVRLAKDRKKVDKIVADSQERAYWRVHRPPPGCTSSLEP---- 120
M A +V + ++ + +V +R W V E
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV-----------EIVNYN 1847
Query: 121 IPTCMRGT-----GHRKKRSVEDLKKEVDFLK 147
+ G R+++ + ++F+K
Sbjct: 1848 VE----NQQYVAAGD--LRALDTVTNVLNFIK 1873
>3cx8_B RHO guanine nucleotide exchange factor 11; signal transduction,
protein complex, GTP-binding, lipoprotein, membrane,
nucleotide-binding; HET: GSP; 2.00A {Rattus norvegicus}
PDB: 3cx6_B* 3cx7_B* 1htj_F
Length = 203
Score = 36.7 bits (84), Expect = 0.012
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 216 SIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKVKEIFDEFLKAG 275
+E L P L F Y+ + + F+L +++ + K+I++ FL+
Sbjct: 25 DLEKLKSHPAYLVVFLRYILSQADPGPLLFYLCSEVYQQTNPKDSRSLGKDIWNIFLEKN 84
Query: 276 APCEVNID 283
AP V I
Sbjct: 85 APLRVKIP 92
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS,
signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Length = 211
Score = 34.7 bits (79), Expect = 0.053
Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 216 SIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKV-KEIFDEFLKA 274
S+E + + P L ++ ++ + L ++ S K K + + FL+
Sbjct: 7 SLEQVKRRPAHLMALLQHVALQFEPGPLLCCL-HADMLGSLGPKEAKKAFLDFYHSFLEK 65
Query: 275 GAPCEVNIDG---RTMERTQTELKN 296
A V + ++RT+ +L +
Sbjct: 66 TAVLRVPVPPNVAFELDRTRADLIS 90
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction,
protein complex, GTP-binding, membrane, transducer,
lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo
sapiens} PDB: 1shz_C*
Length = 246
Score = 34.8 bits (79), Expect = 0.058
Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 216 SIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKV-KEIFDEFLKA 274
S+E + + P L ++ ++ + L ++ S K K + + FL+
Sbjct: 61 SLEQVKRRPAHLMALLQHVALQFEPGPLLCCL-HADMLGSLGPKEAKKAFLDFYHSFLEK 119
Query: 275 GAPCEVNIDG---RTMERTQTELKN 296
A V + ++RT+ +L +
Sbjct: 120 TAVLRVPVPPNVAFELDRTRADLIS 144
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 30.2 bits (67), Expect = 1.9
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 345 PFPFGGGQKKKSSTSNPSTAIAGLSTAPGPSTSGMGIPGAPM-GIPGPPGPSK 396
+ G P +A P P ++G PG P G G P +
Sbjct: 285 SYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR 337
Score = 28.3 bits (62), Expect = 8.2
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 349 GGGQKKKSSTSNPSTAIAGLSTAPGPSTSGMGIPGAPM-GIPGPPGP 394
G P +A P P ++G PG P G G
Sbjct: 315 GSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNT 361
>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding
fold, collagen binding, platelet activa hemostasis,
plasma, structural protein-protein binding COMP; 2.80A
{Synthetic}
Length = 87
Score = 26.9 bits (60), Expect = 5.9
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 367 GLSTAPGPSTSGMGIPGAPMGIPGPPGP 394
G PGP G PG G PGPPGP
Sbjct: 5 GPPGPPGPR----GQPGVM-GFPGPPGP 27
Score = 26.5 bits (59), Expect = 6.7
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 361 PSTAIAGLSTAPGPSTSGMGIPGAPMGIPGPPGP 394
P G PGP G PG G PGPPGP
Sbjct: 28 PXXGPPGPPGPPGPR----GQPGVM-GFPGPPGP 56
Score = 26.5 bits (59), Expect = 7.4
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 5/23 (21%)
Query: 372 PGPSTSGMGIPGAPMGIPGPPGP 394
PGP G PG G PGPPGP
Sbjct: 68 PGP----RGQPGVM-GFPGPPGP 85
>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein
synthesis, native chemical ligation; 0.98A {Synthetic}
PDB: 3boi_A 3bog_A* 3bog_C*
Length = 81
Score = 26.2 bits (58), Expect = 8.1
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 367 GLSTAPGPSTSGMGIPGAPMGIPGPPGPS 395
G + PG G+G G G G G
Sbjct: 36 GGNGNPGC-AGGVGGAGGASGGTGVGGRG 63
>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa
1090} SCOP: b.52.1.4 PDB: 2g6g_A
Length = 422
Score = 28.0 bits (61), Expect = 9.3
Identities = 13/45 (28%), Positives = 16/45 (35%)
Query: 369 STAPGPSTSGMGIPGAPMGIPGPPGPSKDVATRALRRGSDRSLTG 413
T P P TS + P P GIP P G + S+
Sbjct: 8 QTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVYTVVPHLSMPH 52
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases,
protoporphyrin IX, electron T lignin peroxidase, lignin
degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB:
3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A*
2vka_A*
Length = 331
Score = 27.9 bits (62), Expect = 9.6
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 337 QPCTKKRFPFPFGGGQKKKSSTSNPSTAIAGLSTAPGPSTSGMGIPGA 384
P P G + +T L+ PGP TS +PG+
Sbjct: 285 PPALVGAAHLP-AGFSLSDVEQACAATPFPALTADPGPVTSVPPVPGS 331
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.387
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,716,562
Number of extensions: 521253
Number of successful extensions: 1683
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1580
Number of HSP's successfully gapped: 71
Length of query: 571
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 472
Effective length of database: 3,937,614
Effective search space: 1858553808
Effective search space used: 1858553808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.9 bits)