RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15721
(571 letters)
>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 138
Score = 155 bits (392), Expect = 2e-45
Identities = 62/138 (44%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 201 LVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKI 260
LV++PT+ RV RWA + +LI+DP G F +LRKE+S EN+ FW +L+ QSK+
Sbjct: 2 LVDIPTKMRVERWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKYGDQSKV 61
Query: 261 PAKVKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYP 320
K +EI+ FL GA +NIDG+TM+ T LK+P R+ DAA HIY L+K D Y
Sbjct: 62 KEKAEEIYKLFLAPGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYM-LMKKDSYA 120
Query: 321 RFIRSDHYKNLLQAGKQP 338
R+++S YK +L +P
Sbjct: 121 RYLKSPIYKEMLAKAIEP 138
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 128
Score = 134 bits (337), Expect = 6e-38
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 205 PTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAK 263
P+ + V+ WA S + L+ P G + F ++LR EYS EN+ FWL EL+ A Q + K
Sbjct: 1 PSPEEVQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEK 60
Query: 264 VKEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
+ I+++++ +P EV++D R E +++ PS T+D A IYT L+ D YPRF+
Sbjct: 61 ARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYT-LMHRDSYPRFL 119
Query: 324 RSDHYKNLL 332
S Y+ LL
Sbjct: 120 SSPTYRALL 128
>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 128
Score = 133 bits (335), Expect = 1e-37
Identities = 48/127 (37%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 206 TEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAKV 264
+++ V++WA S+E+LI GLA F ++L+ EYS ENI FW+ E ++ SK+ K
Sbjct: 2 SQEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKA 61
Query: 265 KEIFDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIR 324
K+I++EF+ A EVN+D T E T + P+ +D A + I+ L++ D Y RF++
Sbjct: 62 KKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFN-LMEKDSYRRFLK 120
Query: 325 SDHYKNL 331
S Y +L
Sbjct: 121 SRFYLDL 127
>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18,
RGS18 {Human (Homo sapiens) [TaxId: 9606]}
Length = 132
Score = 132 bits (332), Expect = 3e-37
Identities = 43/127 (33%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Query: 209 RVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAKVKEI 267
+W S + L+ GL FT +L+ E+S ENI FW+ + ++S +I K K I
Sbjct: 5 EAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAI 64
Query: 268 FDEFLKAGAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDH 327
+++F++ AP EVN+D T E + P+ ++DAA +Y L++ D Y RF++SD
Sbjct: 65 YEKFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQ-LMEQDSYTRFLKSDI 123
Query: 328 YKNLLQA 334
Y +L++
Sbjct: 124 YLDLMEG 130
>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16,
RGS16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 123 bits (309), Expect = 5e-34
Identities = 43/117 (36%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 216 SIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSA-QSKIPAKVKEIFDEFLKA 274
S + L+ G+A F ++L+ E+S EN+ FWL E ++ +K+ ++ +IF+EF+ +
Sbjct: 1 SFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHQIFEEFICS 60
Query: 275 GAPCEVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFIRSDHYKNL 331
AP EVNID T E T+ L+ + +DAA T L++ D YPRF++S Y++L
Sbjct: 61 EAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRT-LMEKDSYPRFLKSPAYRDL 116
>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 147
Score = 118 bits (296), Expect = 5e-32
Identities = 26/134 (19%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
Query: 212 RWALSIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRR-----SAQSKIPAKVKE 266
+WA S+ L+ D G++ F ++L++E + + FW T R+ S + K +
Sbjct: 11 KWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARA 70
Query: 267 IFDEFLKAGAPC---EVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTLLLKNDCYPRFI 323
I+ +++ + ++ + + +D A I ++ + YP F+
Sbjct: 71 IYRKYILDNNGIVSRQTKPATKSFIKGCIMKQLIDPAMFDQAQTEIQA-TMEENTYPSFL 129
Query: 324 RSDHYKNLLQAGKQ 337
+SD Y + G +
Sbjct: 130 KSDIYLEYTRTGSE 143
>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2,
N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 157
Score = 115 bits (288), Expect = 1e-30
Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 7/141 (4%)
Query: 199 SPLVEVPTEKRVRRWALSIEDLIKDPTGLAEFTSYLRKEYSHE--NIRFWLMVTELRRSA 256
+ V + R ++ E + G F + K + F+ + + +
Sbjct: 9 PSIRSVMQKYLEDRGEVTFEKIFSQKLGYLLFRDFCLKHLEEAKPLVEFYEEIKKYEKLE 68
Query: 257 -QSKIPAKVKEIFDEFLKAGAPC---EVNIDGRTMERTQTELKNPSRFTYDAAAEHIYTL 312
+ + +EIFD ++ + + K + E I
Sbjct: 69 TEEERLVCSREIFDTYIMKELLACSHPFSKSAIEHVQGHLVKKQVPPDLFQPYIEEICQN 128
Query: 313 LLKNDCYPRFIRSDHYKNLLQ 333
L + D + +FI SD + Q
Sbjct: 129 L-RGDVFQKFIESDKFTRFCQ 148
>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 182
Score = 96.8 bits (241), Expect = 7e-24
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 216 SIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKVKEIFDEFLKAG 275
+E L P L F Y+ + + F+L ++++ + K+I++ FL+
Sbjct: 8 DLEKLKSRPAHLGVFLRYIFSQADPSPLLFYLCAEVYQQASPKDSRSLGKDIWNIFLEKN 67
Query: 276 APCEVNIDGRTMERTQTELKN--PSRFTYDAAAEHIYTLLLKN 316
AP V I + L+N +R A E + +
Sbjct: 68 APLRVKIPEMLQAEIDSRLRNSEDARGVLCEAQEAAMPEIQEQ 110
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma
chain {Cow (Bos taurus) [TaxId: 9913]}
Length = 54
Score = 60.9 bits (148), Expect = 8e-13
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 135 SVEDLKKEVDFLKSCLEKTRTKTSLVVESLIPFSETYAEYDAFFTTPNPS-NPW 187
S+ +K V+ LK R K S L+ + E +A+ D T S NP+
Sbjct: 1 SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF 54
>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma
chain {Cow (Bos taurus) [TaxId: 9913]}
Length = 68
Score = 33.2 bits (76), Expect = 0.007
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 135 SVEDLKKEVDFLKSCLEKTRTKTSLVVESLIPFSETYAEYDAFFTTPNPS-NPW 187
+ LK EVD LK + R S E + E + D NP+
Sbjct: 11 EKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPF 64
>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId:
9606]}
Length = 190
Score = 32.8 bits (75), Expect = 0.061
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 216 SIEDLIKDPTGLAEFTSYLRKEYSHENIRFWLMVTELRRSAQSKIPAKV-KEIFDEFLKA 274
S+E + + P L ++ ++ + L ++ S K K + + FL+
Sbjct: 5 SLEQVKRRPAHLMALLQHVALQFEPGPLLCCL-HADMLGSLGPKEAKKAFLDFYHSFLEK 63
Query: 275 GAPCEVNID---GRTMERTQTEL 294
A V + ++RT+ +L
Sbjct: 64 TAVLRVPVPPNVAFELDRTRADL 86
>d1kzqa2 b.6.2.1 (A:132-255) Major surface antigen p30, SAG1
{Toxoplasma gondii [TaxId: 5811]}
Length = 124
Score = 30.2 bits (68), Expect = 0.21
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 539 VPEKNTEVCPWEDEESCKVNT 559
VP+ N + C C +
Sbjct: 43 VPQDNNQYCSGTTLTGCNEKS 63
>d1pgl22 b.121.4.2 (2:183-370) Comovirus coat proteins (VP37 and
VP23) {BPMV (Bean pod mottle virus) [TaxId: 12260]}
Length = 188
Score = 29.0 bits (65), Expect = 0.97
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 342 KRFPFPFGGGQ-KKKSSTSNPSTAIAGLS 369
KR P GGG K + N A+ +
Sbjct: 29 KRMPLSIGGGAGAKSAILMNMPNAVLSMW 57
>d1ny722 b.121.4.2 (2:183-369) Comovirus coat proteins (VP37 and
VP23) {CPMV (Cowpea mosaic virus) [TaxId: 12264]}
Length = 187
Score = 28.7 bits (64), Expect = 1.2
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 342 KRFPFPFGGGQ-KKKSSTSNPSTAIAGLS 369
+R P GGG ++ +N + +
Sbjct: 29 RRMPLSIGGGAGATQAFLANMPNSWISMW 57
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 28.4 bits (63), Expect = 1.7
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 67 NLANKWDLVSMQAEEQVRLAKDRKK 91
K +L++M + Q +L + +K
Sbjct: 161 GEQAKLNLMNMLQQSQDKLLRAQKD 185
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex
aeolicus [TaxId: 63363]}
Length = 101
Score = 26.9 bits (59), Expect = 2.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 261 PAKVKEIFDEFLKAGAPCE 279
P V EI ++ LK G P E
Sbjct: 77 PEDVDEIVEKHLKGGEPVE 95
>d1ojqa_ d.166.1.1 (A:) Exoenzyme c3 {Staphylococcus aureus [TaxId:
1280]}
Length = 212
Score = 27.0 bits (59), Expect = 5.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 115 TSSLEPIPTCMRGTGHRKKRSVEDLKKEVDFLKSCLEKTRTKTSLVV 161
T + PI T +R + E+++++V L S + K+ T S+ V
Sbjct: 37 TKNSSPINTPLRSANGDVNKLSENIQEQVRQLDSTISKSVTPDSVYV 83
>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga
maritima [TaxId: 2336]}
Length = 292
Score = 26.4 bits (58), Expect = 9.5
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 12/64 (18%)
Query: 31 PDNVEYAIYLEK--RS----------LRNKQRHGLEEYELEALNNLKRNLANKWDLVSMQ 78
+ +E ++ R L+ K G+ E ELEA+ + ++ +
Sbjct: 36 KEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREGADKVGTREIPIVV 95
Query: 79 AEEQ 82
AE +
Sbjct: 96 AEGK 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.387
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,138,148
Number of extensions: 101486
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 22
Length of query: 571
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 481
Effective length of database: 1,171,896
Effective search space: 563681976
Effective search space used: 563681976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.1 bits)