BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15723
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D0I8|MRT4_MOUSE mRNA turnover protein 4 homolog OS=Mus musculus GN=Mrto4 PE=2 SV=1
Length = 239
Score = 273 bits (699), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 135/220 (61%), Positives = 167/220 (75%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y +F+FSV NMRNSKLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
K SR FFGKNKVM ALG+S DE + N+H VS L+G+ GLLFTNR+K++V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
+ DFA++G +T V L GPL +FPHS+EPQLRQLGL T L KGVVTL D+ VCK+GD
Sbjct: 121 EMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180
Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLD 220
VLTPEQARILKL +MA+FKV++ ++ + G F+ + D
Sbjct: 181 VLTPEQARILKLFGYEMAEFKVIIKYMWDAQSGRFQQMDD 220
>sp|A4FV84|MRT4_BOVIN mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4 PE=2 SV=1
Length = 239
Score = 270 bits (689), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/220 (60%), Positives = 166/220 (75%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y +F+FSV NMRNSKLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
K SR FFGKNKVM ALG+S DE + N+H VS L+G+ GLLFTNR+K++V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYT 120
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
+ D+A++G +T V L GPL +FPHS+EPQLRQLGL T L KGVVTL D+ VCK+GD
Sbjct: 121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180
Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLD 220
VLTPEQAR+LKL +MA+FKV + ++ + G F+ + D
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVSIKYMWDAQSGRFQQMGD 220
>sp|Q9UKD2|MRT4_HUMAN mRNA turnover protein 4 homolog OS=Homo sapiens GN=MRTO4 PE=1 SV=2
Length = 239
Score = 268 bits (685), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 131/220 (59%), Positives = 165/220 (75%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y +F+FSV NMRNSKLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
K SR FFGKNKVM ALG+S DE + N+H VS L+G+ GLLFTNR+K++V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
+ D+A++G + V L GPL +FPHS+EPQLRQLGL T L +GVVTL D+ VCK+GD
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180
Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLD 220
VLTPEQAR+LKL +MA+FKV + ++ + G F+ + D
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVTIKYMWDSQSGRFQQMGD 220
>sp|Q86HD3|MRT4_DICDI mRNA turnover protein 4 homolog OS=Dictyostelium discoideum GN=mrt4
PE=3 SV=1
Length = 223
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 146/214 (68%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
M KSKR+ V ++K K E+K+ L + V++Y I++F+ +NMRN+KLK VR +W
Sbjct: 1 MVKSKRNVVVNMTKVTKNPGEKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
S+F FGKNKV++ LGKS+EDE++ N+H ++ L+G+CGL FTN KD V +F Y
Sbjct: 61 STSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYS 120
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
++DF +SGF+S E + +KEGP+ HS+E LR LGL T L GV+ + +++T+C+ G
Sbjct: 121 EKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGV 180
Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGT 214
+TPEQ+++LKL ++++FK + ++N+ E T
Sbjct: 181 AVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFT 214
>sp|Q9USZ6|MRT4_SCHPO mRNA turnover protein 4 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC11G11.03 PE=3 SV=1
Length = 241
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 140/230 (60%), Gaps = 12/230 (5%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKS+R K +TL++T KKG E K L + ++++ ++ +++F V NMRN+ LK +R+DW
Sbjct: 1 MPKSRRSKVLTLAQTEKKGHEGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
K SR F GK KVMA ALG + E+E +N+ ++ L G GLLFTN D+V+ +F+ +
Sbjct: 61 KGSRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFV 120
Query: 121 DEDFAKSGFISTEDVELKEGPL----PEFP--------HSIEPQLRQLGLQTNLNKGVVT 168
DFA++G ++ + GP+ + P H++EPQ+RQLG+ T L GVVT
Sbjct: 121 QNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVT 180
Query: 169 LFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENL 218
L D +C +G L Q R+LKL A+FKV L +Y+KK + E L
Sbjct: 181 LLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLLGYYSKKGASVEFL 230
>sp|Q7S302|MRT4_NEUCR mRNA turnover protein 4 homolog OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=NCU07547 PE=3 SV=1
Length = 252
Score = 157 bits (397), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 18/236 (7%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKSKR K L++ KK E+K+ L + + + + Y + FVFS+ NMRN+ LKDVR +
Sbjct: 1 MPKSKRAKVYNLTQVTKKNREQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKEL 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
D R FFGK K+ A ALG + ED + +S L G GL+FTNR ++ +F
Sbjct: 61 NDCRIFFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLT 120
Query: 121 DEDFAKSGFISTEDVELKEGPL----PEFP--------HSIEPQLRQLGLQTNLNKGVVT 168
DFA++G ++T + + GPL E P H++EP+LR+LG+ T + KG V
Sbjct: 121 QVDFARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKVC 180
Query: 169 L------FKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENL 218
L D+ +CK+G+ L Q R+LKL +++F+V L +++ G L
Sbjct: 181 LGDEAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEVTEL 236
>sp|Q6FJ04|MRT4_CANGA mRNA turnover protein 4 homolog OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=MRT4 PE=3 SV=1
Length = 239
Score = 137 bits (346), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 128/231 (55%), Gaps = 13/231 (5%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MP+SKR K VTL++T KKG E K+ + DE+ +A++ Y +FV + ++R L+++R W
Sbjct: 1 MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDTYKYVFVLQLDDVRTPVLQEIREAW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
S+ GK KV+ ALG ++E E ++N+ ++ G GLLFTN + D V +F+ Y
Sbjct: 61 VGSKLLMGKRKVLEKALGTTREQEYKENLSKLTKYCSGVIGLLFTNETLDTVKEYFEAYS 120
Query: 121 DEDFAKSGFISTEDVELKEG---------PLPE---FPHSIEPQLR-QLGLQTNLNKGVV 167
D+++ + E+ EG P+ E HS+EP LR + + T + G +
Sbjct: 121 RLDYSRPNSRAPITFEVPEGIVYSRGGQIPIEEDVPMAHSLEPTLRNKYEMPTKIKAGKI 180
Query: 168 TLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENL 218
TL + VCK+G L QA ILK +A+FKV++ +Y+ + T L
Sbjct: 181 TLEAPYLVCKEGQKLDVRQALILKQFGVALAQFKVIISAYYDNESSTVSEL 231
>sp|Q75DK9|MRT4_ASHGO mRNA turnover protein 4 homolog OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRT4
PE=3 SV=1
Length = 236
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 132/231 (57%), Gaps = 13/231 (5%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MP+SKR K VTL++T KKG E K+ + DE+ +A++ Y ++V ++++R L+++R+ W
Sbjct: 1 MPRSKRSKLVTLAQTEKKGRENKERIFDEVRQALDTYRYVWVLRLEDVRTPVLQEIRSAW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
S+ G+ KV+ ALG ++E E ++N+ + +G CGLLFT+ + + V +F Y
Sbjct: 61 AGSKLIMGRRKVLEKALGGTRETEYKENVSGLVKQCEGMCGLLFTDETPETVTAYFREYR 120
Query: 121 DEDFAKSGFISTEDVEL-------KEGPLP---EFP--HSIEPQLR-QLGLQTNLNKGVV 167
D++++ + VE+ + G +P + P HS+EP LR + + T + G +
Sbjct: 121 KADYSRAKSRAPLRVEIPAGVVYSRGGQVPAEDDVPMVHSLEPTLRNKFKMPTRIQNGKI 180
Query: 168 TLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENL 218
TL + + VC+ G+ L QA ILK A+F+V L +Y+ + E +
Sbjct: 181 TLEQPYLVCEAGETLDVRQALILKQFGVAAAEFRVKLAAYYDGEAAAVEEV 231
>sp|P33201|MRT4_YEAST mRNA turnover protein 4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MRT4 PE=1 SV=1
Length = 236
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 13/230 (5%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MP+SKR K VTL++T KKG E K+ + DE+ +A++ Y ++V + ++R L+++R W
Sbjct: 1 MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDTYRYVWVLHLDDVRTPVLQEIRTSW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
S+ GK KV+ ALG+ +E+E ++N++ +S G GLLFT+ + V +F Y
Sbjct: 61 AGSKLIMGKRKVLQKALGEKREEEYKENLYQLSKLCSGVTGLLFTDEDVNTVKEYFKSYV 120
Query: 121 DEDFAKSGFISTEDVELKEG---------PLPE---FPHSIEPQLR-QLGLQTNLNKGVV 167
D+++ + + EG P E HS+EP +R + + T + G +
Sbjct: 121 RSDYSRPNTKAPLTFTIPEGIVYSRGGQIPAEEDVPMIHSLEPTMRNKFEIPTKIKAGKI 180
Query: 168 TLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFEN 217
T+ + VC +G+ L QA ILK ++FKV + +Y+ T E+
Sbjct: 181 TIDSPYLVCTEGEKLDVRQALILKQFGIAASEFKVKVSAYYDNDSSTVES 230
>sp|O74109|RLA0_PYRHO Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rplP0 PE=1 SV=1
Length = 342
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 10/172 (5%)
Query: 28 DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFF--GKNKVMAYALGKSQED-- 83
+EL K ++ Y I + V +M L +R +++ +N ++ A+ K+ ++
Sbjct: 13 EELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELG 72
Query: 84 --EIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGP 141
E+EK + + G+L TN + + + AK G + +DV + GP
Sbjct: 73 KPELEKLVEYIDRG----AGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGP 128
Query: 142 LPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
P P I Q++ LG+ + KG VT+ KD TV K G+V+TPE A IL L
Sbjct: 129 TPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNAL 180
>sp|Q9UXS5|RLA0_PYRAB Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=rplP0 PE=3 SV=1
Length = 341
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Query: 28 DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFF--GKNKVMAYALGKSQEDEI 85
+EL ++ Y I + V +M L +R +++ +N ++ A+ K+ ++
Sbjct: 13 EELANLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAQELG 72
Query: 86 EKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEF 145
+ + ++ + G+L TN + + + AK G + +DV + GP P
Sbjct: 73 KPELEKLAEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVIPAGPTPLA 132
Query: 146 PHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
P I Q++ +G+ + +G VT+ KD TV K G+V+TPE A IL L
Sbjct: 133 PGPIVGQMQAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNAL 180
>sp|O27717|RLA0_METTH Acidic ribosomal protein P0 homolog OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rplP0 PE=3 SV=1
Length = 336
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 103/206 (50%), Gaps = 11/206 (5%)
Query: 29 ELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFF-FGKNKVMAYALGKSQEDEIEK 87
EL ++ Y + + ++ ++ +L+ +R +DS K +++ AL K+ E+E
Sbjct: 14 ELHDLIKGYEVVGIANLADIPARQLQKMRQTLRDSALIRMSKKTLISLALEKAGR-ELE- 71
Query: 88 NIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDF---AKSGFISTEDVELKEGPLPE 144
N+ +S ++GQ L+FT+ + F + ED AK G I+ +D+ + +G
Sbjct: 72 NVDSLSDYMEGQPALIFTDMNP---FKLFKILEDSKTPAPAKPGAIAPDDIVVPKGDTGF 128
Query: 145 FPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLL 204
P I +L+Q+G+ + KG + + DH V K G+ + P+ A IL L + + + L
Sbjct: 129 APGPILGELQQIGIPAKIEKGKIVVSNDHVVVKAGEEIPPKVAGILTRLDIQPLEVGIDL 188
Query: 205 YLWY-NKKEGTFENL-LDREKTPMDI 228
Y N+ T + L +D EKT DI
Sbjct: 189 RAAYENQTVYTADVLTIDEEKTLSDI 214
>sp|Q8TX50|RLA0_METKA Acidic ribosomal protein P0 homolog OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=rplP0 PE=3 SV=2
Length = 357
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 9/207 (4%)
Query: 29 ELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIE 86
EL + +++Y N+ + ++ + +L+++R + D+ +N +M AL + ++ E
Sbjct: 27 ELKELMDEYENVGLVDLEGIPAPQLQEIRAKLRERDTIIRMSRNTLMRIALEEKLDERPE 86
Query: 87 KNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFP 146
+ + ++G +FTN + + + AK G I+ ED+ + EGP P P
Sbjct: 87 --LEPLLDYIEGPVAFIFTNLDPFKLYKLLEESKASAPAKPGDIAPEDIVVPEGPTPFEP 144
Query: 147 HSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYL 206
I +L+Q GL + G V + KD + K+G+ + + A ILK K ++ +V + +
Sbjct: 145 GPIVSELQQAGLPAQIQDGKVVITKDTVLVKEGEEIDEKTAEILK--KLEIEPMEVGVDI 202
Query: 207 WYNKKEGTFENLLDREKTPMDIYDMED 233
EGT L +R+ +D + ED
Sbjct: 203 VAIVAEGT---LFERDDLAIDFDEYED 226
>sp|C5A428|RLA0_THEGJ Acidic ribosomal protein P0 homolog OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=rplP0 PE=3 SV=1
Length = 340
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Query: 28 DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFF-FGKNKVMAYALGKSQEDEIE 86
+EL K ++ + I + V + L +R+ + +N ++ A+ ++ ++ +
Sbjct: 13 EELTKIIKSHPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELNK 72
Query: 87 KNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFP 146
++ ++ ++G +L T + + + + AK G + +DV + GP P
Sbjct: 73 PDLEKLADYIEGGAAILATEMNPFKLYKLLEESKTPAPAKPGAVVPKDVVIPAGPTSLAP 132
Query: 147 HSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
+ +++ LG+ + KG VT+ KD+TV K G+V+T + ARIL L
Sbjct: 133 GPLVGEMQALGIPARIEKGKVTIQKDYTVLKAGEVITEQLARILNAL 179
>sp|Q8SRJ7|RLA0_ENCCU 60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPP0 PE=1 SV=1
Length = 290
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 6/207 (2%)
Query: 3 KSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK- 61
+ KR+K T K ERK+ + K E Y+ + ++N+ +++LKD++ W
Sbjct: 14 QPKREKFFHPGMTRKDAKERKELTYERARKLFETYSRFALVKIENVVSTQLKDIKRQWGG 73
Query: 62 DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYED 121
++ GKN + A+ + E+ V +KG +F + D+ D
Sbjct: 74 NAELLMGKNSAIRRAIADLGKPELSG----VYDLVKGDVCFVFFKGNARDIKKAIDENVR 129
Query: 122 EDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDV 181
E AK G ++ DV ++ P + LG+ T + KG V + + V +GD
Sbjct: 130 EACAKVGNVAQRDVWVESCITGMTPDKTS-YFQALGIATKITKGKVEIISPYKVLSEGDK 188
Query: 182 LTPEQARILKLLKKKMAKFKVLLYLWY 208
+ P QA +L +L K +K+ ++ Y
Sbjct: 189 VGPSQANLLGMLNIKPFCYKMTMHQIY 215
>sp|B6YSX9|RLA0_THEON Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus
(strain NA1) GN=rplP0 PE=3 SV=1
Length = 339
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 11/172 (6%)
Query: 28 DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFF-FGKNKVMAYALGKSQED--- 83
+EL ++ Y I + V N+ L +R + +N ++ A+ ++ ++
Sbjct: 13 EELTNIIKSYPVIALVDVANVPAYPLSKMREKLRGKALLRVSRNTLIELAIKRAAQELGK 72
Query: 84 -EIEKNI-HVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGP 141
E+EK I H+ +G G+L T + + + + AK G DV + GP
Sbjct: 73 PELEKLIDHI-----QGGAGILATEMNPFKLYKLLEESKTPAPAKPGVPVPRDVVIPAGP 127
Query: 142 LPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
P + +++ LG+ + KG V++ KD+TV K G+V+T + ARIL L
Sbjct: 128 TSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNAL 179
>sp|Q5JH36|RLA0_PYRKO Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rplP0 PE=3
SV=1
Length = 340
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 1/167 (0%)
Query: 28 DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFF-FGKNKVMAYALGKSQEDEIE 86
+EL ++ Y I + V + L +R+ + +N ++ A+ ++ ++ +
Sbjct: 13 EELANIIKSYPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELGQ 72
Query: 87 KNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFP 146
+ + ++G +L T + + + + AK+G + +DV + GP P
Sbjct: 73 PELEKLIDHIQGGAAILATEMNPFKLYKLLEESKTPAPAKAGAVVPKDVVIPAGPTSLAP 132
Query: 147 HSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
+ +++ LG+ + KG V++ KD+TV K G+V+T + ARIL L
Sbjct: 133 GPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNAL 179
>sp|C6A1F5|RLA0_THESM Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1
Length = 338
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 82/164 (50%), Gaps = 1/164 (0%)
Query: 28 DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFF-FGKNKVMAYALGKSQEDEIE 86
+EL K ++ Y I + V ++ L +R +D +N ++ AL K+ ++ +
Sbjct: 13 EELTKLLQDYPVIALVDVADVPAYPLSKMRESLRDKAVLRVSRNTLIELALKKAAQELND 72
Query: 87 KNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFP 146
N+ + ++G G+L T + + + + + AK+G + DV + GP P P
Sbjct: 73 SNLEKLIEHIQGGTGILVTKINPFKLYKFLEESKKPAPAKAGAPAPRDVVVPAGPTPLSP 132
Query: 147 HSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARIL 190
+ +++ LG+ + KG V++ KD V K G+++TP+ A IL
Sbjct: 133 GPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGEIITPQLANIL 176
>sp|Q8TZJ8|RLA0_PYRFU Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rplP0 PE=1
SV=1
Length = 339
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 28 DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFF--GKNKVMAYALGKSQED-- 83
+EL ++ Y + + V +M L +R +++ +N ++ A+ K ++
Sbjct: 13 EELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELG 72
Query: 84 --EIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGP 141
E+EK I+ + +G G+L T + + + AK G +DV + GP
Sbjct: 73 KPELEKLINYI----EGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGP 128
Query: 142 LPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
P I Q++ +G+ + +G VT+ KD V K G+ +TPE A IL L
Sbjct: 129 TSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNAL 180
>sp|Q6L1X8|RLA0_PICTO Acidic ribosomal protein P0 homolog OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rplP0 PE=3 SV=1
Length = 315
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 42 VFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQC 100
+ S++ +RN++ + +RN +D +R + +++ A+ E+ + NI + GQ
Sbjct: 27 IVSIKGLRNNEFQKIRNSIRDKARIKVSRARLLRLAI----ENTGKNNIVKLKDYAHGQV 82
Query: 101 GLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDV--ELKEGPLPEFPHSIEPQLRQLGL 158
L+ T+ S + + + + AK G I+ ED+ E KE P P E Q + GL
Sbjct: 83 ALITTDESPKKIYDILEKSKTKAPAKGGEIAEEDIVIEPKETNFPPGPKISEFQ--KAGL 140
Query: 159 QTNLNKGVVTLFKDHTVCKKGDVLTPEQARILK 191
+ KG + + + T KKGDV+T E+A +LK
Sbjct: 141 PAAIEKGKIVIKSEVTFVKKGDVITREKALVLK 173
>sp|Q8ZTT3|RLA0_PYRAE Acidic ribosomal protein P0 homolog OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rplP0 PE=3 SV=1
Length = 345
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 89/193 (46%), Gaps = 7/193 (3%)
Query: 22 RKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQ 81
RK + E + ++KY +F+F + + + L + R + +G K++ L K
Sbjct: 19 RKVKIVSEATELLQKYPYVFLFDLHGLSSRILHEYRYRLRR----YGVIKIIKPTLFKIA 74
Query: 82 EDEIEKNIHV-VSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEG 140
++ I ++ ++G+ G FT+ + +V+ A+ G + D+ + G
Sbjct: 75 FTKVYGGIPAEIAEKVRGEVGFFFTSFNPAEVIKIVAENSVRRAAQPGDKAPFDIVVPAG 134
Query: 141 PLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKL--LKKKMA 198
P P I + +L + T + +G + + KD V K G +TPE A +L++ ++
Sbjct: 135 PTNASPGPIISKFGKLKIPTRVQEGKIWIAKDTVVAKAGQEITPEMAEVLRVVGIEPIFE 194
Query: 199 KFKVLLYLWYNKK 211
+ ++L +W ++
Sbjct: 195 QLRLLGVIWRGQR 207
>sp|Q3INI7|RLA0_NATPD Acidic ribosomal protein P0 homolog OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rplP0 PE=3 SV=1
Length = 354
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFF-FGKNKVMAYALGK 79
E KQ DELV +E+Y ++ V + + + +L+D+R D + +N +M AL +
Sbjct: 13 EWKQEEIDELVAFLERYESVGVVDITGIPSRQLQDMRRDLHGTAALRVSRNTLMERALNE 72
Query: 80 SQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAK------SGFISTE 133
+ E HV +GQ GL+ TN + F +Y+ + +K +G ++
Sbjct: 73 GGDGLGELVEHV-----EGQVGLIGTNDNP------FGLYQQLEESKTPAPINAGEVAPN 121
Query: 134 DVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
D+ + EG P L+Q+G + G + + +D TV G+ ++ + + +L L
Sbjct: 122 DIVIPEGDTGVDPGPFVGDLQQVGANARIEGGSIKVVEDSTVLSAGEEVSSDLSNVLSEL 181
>sp|Q8PY51|RLA0_METMA Acidic ribosomal protein P0 homolog OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rplP0 PE=3 SV=1
Length = 347
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 87/172 (50%), Gaps = 9/172 (5%)
Query: 27 RDEL--VKAVEKYNNIF-VFSVQNMRNSKLKDVRNDWKDSRFF-FGKNKVMAYALGKSQE 82
+DE+ +K + + + +F + ++ + +K++ +R D KD +N + AL
Sbjct: 16 KDEIENIKELIQSHKVFGMVRIEGILATKIQKIRRDLKDVAVLKVSRNTLTERAL----- 70
Query: 83 DEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPL 142
+++ ++I ++ L Q L+FTN S + + + K+G I+ ED+ +++GP
Sbjct: 71 NQLGESIPEMTRYLDNQTALIFTNESPFKLYKLLEQTKTPSPIKAGAIAPEDIIVQKGPT 130
Query: 143 PEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLK 194
P I +L+ G+ +++ G V + + VCK G+ + + A +L L+
Sbjct: 131 SFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEAVPQKLATMLSKLE 182
>sp|P57691|RLA03_ARATH 60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C
PE=1 SV=1
Length = 323
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 2/190 (1%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGK 79
E+K +L + +++Y I V + N+ +++L+++R + DS GKN +M ++
Sbjct: 8 EKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRI 67
Query: 80 SQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKE 139
E+ I + L+G GL+FT +V Y+ A+ G ++ DV ++
Sbjct: 68 HSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQP 127
Query: 140 GPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAK 199
G P + L + T +NKG V + + K+GD + +A +L L +
Sbjct: 128 GNTGLDPSQTS-FFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFS 186
Query: 200 FKVLLYLWYN 209
+ +++ Y+
Sbjct: 187 YGLVVQSVYD 196
>sp|Q42112|RLA02_ARATH 60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B
PE=1 SV=2
Length = 320
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 2/190 (1%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGK 79
E+K +L + +++Y I V + N+ +++L+++R + DS GKN +M ++
Sbjct: 8 EKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRI 67
Query: 80 SQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKE 139
E+ I + L+G GL+FT +V Y+ A+ G ++ DV ++
Sbjct: 68 HSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQP 127
Query: 140 GPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAK 199
G P + L + T +NKG V + + K+GD + +A +L L +
Sbjct: 128 GNTGLDPSQTS-FFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFS 186
Query: 200 FKVLLYLWYN 209
+ +++ Y+
Sbjct: 187 YGLVVQSVYD 196
>sp|P15825|RLA0_HALMA 50S ribosomal protein L10E OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rplP0 PE=1
SV=2
Length = 348
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 82/174 (47%), Gaps = 6/174 (3%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGK 79
E KQ D +V+ +E Y ++ V ++ + + +L+D+R D + +N ++ AL
Sbjct: 14 EWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERAL-- 71
Query: 80 SQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKE 139
D+++ + ++ + GQ GL+ T+ + + + + +G ++ D+ + E
Sbjct: 72 ---DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPE 128
Query: 140 GPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
G P +L+ +G + +G + + D TV G+ ++ E + +L L
Sbjct: 129 GDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNEL 182
>sp|Q46EU9|RLA0_METBF Acidic ribosomal protein P0 homolog OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rplP0 PE=3 SV=1
Length = 346
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 6/171 (3%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFF-FGKNKVMAYALGK 79
E K++ + +++ ++ + + ++ + +K++ +R D KD +N + AL +
Sbjct: 13 EWKKDEIENIMELIQSHKVFGMVGIEGILATKIQKIRRDLKDVAVLKVSRNSLTERALNQ 72
Query: 80 SQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKE 139
E E N + L Q L+FTN S + + + K G I+ D+ +++
Sbjct: 73 LGESIPEMNKY-----LDKQTALVFTNESPFKLYKVLEQTKTPSPIKGGAIAPADIIVQK 127
Query: 140 GPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARIL 190
GP P I +L+ G+ +++ G V + + VCK G+V++ + A +L
Sbjct: 128 GPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEVVSQKLATML 178
>sp|Q8TI80|RLA0_METAC Acidic ribosomal protein P0 homolog OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=rplP0 PE=3 SV=1
Length = 347
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 84/172 (48%), Gaps = 9/172 (5%)
Query: 27 RDEL--VKAVEKYNNIF-VFSVQNMRNSKLKDVRNDWKDSRFF-FGKNKVMAYALGKSQE 82
+DE+ +K + + + +F + ++ + +K++ +R D KD +N + AL
Sbjct: 16 KDEIENIKELIQSHKVFGMVGIEGILATKMQKIRRDLKDVAVLKVSRNTLTERAL----- 70
Query: 83 DEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPL 142
+++ + I + L Q L+FTN S + + + + G I+ D+ +++GP
Sbjct: 71 NQLGETIPGMKEYLDKQTALIFTNESPFKLYKLLEQTKTPSPIRGGAIAPADITVQKGPT 130
Query: 143 PEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLK 194
P I +L+ G+ +++ G V + + VCK G+V+ + A +L L+
Sbjct: 131 SFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEVVPQKLATMLSKLE 182
>sp|Q97BN3|RLA0_THEVO Acidic ribosomal protein P0 homolog OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rplP0 PE=3 SV=1
Length = 314
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/172 (19%), Positives = 80/172 (46%), Gaps = 3/172 (1%)
Query: 22 RKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQ 81
+K+ + EL + + K + + ++ +R +++D+R +D K + + S
Sbjct: 7 KKKEIVSELAQDITKSKAVAIVDIKGVRTRQMQDIRAKNRDKVKIKVVKKTLLFKALDSI 66
Query: 82 EDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGP 141
DE + + A GQ +L + ++ + + G ++ D+ ++
Sbjct: 67 NDE---KLTKLKDATTGQIAVLTSQLDPTEIYQMVQATLTKASPRGGEVAPADITVEPMV 123
Query: 142 LPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
P + + +++GLQT + KG + + K+ + KKG+V+ ++A+I+ +L
Sbjct: 124 TGFPPGPMMTEFQKVGLQTGVEKGKIAIKKEAVLVKKGEVIPKDKAKIMAML 175
>sp|O04204|RLA01_ARATH 60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A
PE=1 SV=1
Length = 317
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 10/175 (5%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGK 79
E+K +L + + +Y+ I V + N+ +++L+++R + DS GKN +M ++
Sbjct: 9 EKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRI 68
Query: 80 SQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKE 139
+ + + L+G GL+FT +V Y+ A+ G ++ DV ++
Sbjct: 69 HADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQP 128
Query: 140 GPLPEFPHSIEPQ----LRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARIL 190
G ++P + L + T +NKG V + + KKGD + +A +L
Sbjct: 129 GN-----TGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALL 178
>sp|Q12UP8|RLA0_METBU Acidic ribosomal protein P0 homolog OS=Methanococcoides burtonii
(strain DSM 6242) GN=rplP0 PE=3 SV=1
Length = 337
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 78/167 (46%), Gaps = 4/167 (2%)
Query: 28 DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEK 87
+E+ +E Y V ++ + +L+ +R D KD F KV +L + D+
Sbjct: 19 EEIKSLIESYPLFGVIGIEGIPAKQLQSMRRDLKD----FAVLKVCRNSLTRRALDQSSD 74
Query: 88 NIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPH 147
++ + + Q L+FT ++ + + + K+G ++T D+ +++GP P
Sbjct: 75 DVKKMDDYIDVQTALIFTKQNPFKLYKLLEKSKTPSPIKAGMVATSDIIVEKGPTSFPPG 134
Query: 148 SIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLK 194
I ++ G+ ++ G V + + V K G+V++ + A +L L+
Sbjct: 135 PILGDMQGAGIPAAIDGGKVVIKETKAVAKAGEVVSQKLAAMLTRLE 181
>sp|O74864|RLA0_SCHPO 60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpp0 PE=3 SV=1
Length = 312
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 18/181 (9%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGK 79
E K ++L EKYN++FV ++ N+ + ++ VR + + GKN ++ A+
Sbjct: 6 ESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRG 65
Query: 80 SQED--EIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVEL 137
D E+E+ + VV +G G +FTN +V A+ I+ DV +
Sbjct: 66 IINDMPELERLLPVV----RGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFV 121
Query: 138 KEGPLPEFPHSIEPQ----LRQLGLQTNLNKGVVTLFKD-HTVCKKGDVLTPEQARILKL 192
G +EP + LG+ T + +G + + D H V K V P +A +L +
Sbjct: 122 PAG-----NTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKV-GPSEATLLNM 175
Query: 193 L 193
L
Sbjct: 176 L 176
>sp|P41198|RLA0_HALVD Acidic ribosomal protein P0 homolog OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=rplP0 PE=3 SV=2
Length = 348
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 28 DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFF-FGKNKVMAYALGKSQEDEIE 86
DELV +E Y ++ V V + + +L+ +R + S +N ++ AL DE+
Sbjct: 21 DELVDFIESYESVGVVGVAGIPSRQLQSMRRELHGSAAVRMSRNTLVNRAL-----DEVN 75
Query: 87 KNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFP 146
+ + GQ L+ TN + + + + +G ++ D+ + EG P
Sbjct: 76 DGFEELKEYIAGQVALIGTNDNPFALFKELEASKTPAPINAGEVAPNDIVIPEGDTGVDP 135
Query: 147 HSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
+L+Q+G + G + + +D V +G+ ++ E A +L L
Sbjct: 136 GPFVGELQQVGASARIMDGSIMVTEDSNVLSEGEEVSEELANVLAEL 182
>sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1
Length = 320
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 5/192 (2%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGK 79
E+K +L +E+Y I V + N+ +++L+++R + DS GKN +M ++ +
Sbjct: 9 EKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSV-R 67
Query: 80 SQEDEIEKNIHV-VSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELK 138
++ N ++ + L G GL+FT +V Y+ A+ G ++ DV +
Sbjct: 68 MHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVP 127
Query: 139 EGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD-VLTPEQARILKLLKKKM 197
G P + L + T +NKG V + + +KGD V + E A + KL +
Sbjct: 128 PGNTGLDPSQTS-FFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPF 186
Query: 198 AKFKVLLYLWYN 209
+ V+L ++ N
Sbjct: 187 SYGLVVLSVYDN 198
>sp|P39096|RLA0_LEICH 60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3
SV=1
Length = 322
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 29/203 (14%)
Query: 23 KQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGKSQ 81
K+ + LV + KY+ + + N+R+ ++ DVR + + F GK + A + K
Sbjct: 8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRGCRGKAEFIMGKKTLQAKIVEKRA 67
Query: 82 E------------DEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGF 129
+ D+ E+ + L G GL+FTN + ++ D + + A+ G
Sbjct: 68 QAKDASPEAKPFNDQCEE-----YNLLSGNTGLIFTNNAVQEITSVLDGHRVKAPARVGA 122
Query: 130 ISTEDVELKEGPLPEFPHSIEPQ----LRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPE 185
I + V +P +EP + L + T + KG+V + + V GD +
Sbjct: 123 IPCDVV------VPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNS 176
Query: 186 QARILKLLKKKMAKFKV-LLYLW 207
A +L+ L ++V +L +W
Sbjct: 177 TATLLQKLNISPFYYQVNVLSVW 199
>sp|A3DNI2|RLA0_STAMF Acidic ribosomal protein P0 homolog OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rplP0 PE=3 SV=1
Length = 338
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 31 VKAVEKYNNIF----VFSVQNMR---NSKLKDVRNDW-KDSRFFFGKNKVMAYALGKSQE 82
++ VE +F VF++ ++ ++L+ +R K F KNK++ AL +
Sbjct: 17 IEEVEYLTTLFKSYPVFAIADLTGFPTNQLQKLRKKLSKKVLFRVSKNKLILRALRNAGI 76
Query: 83 DEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPL 142
D + L GQ LLFT+ + ++ + D Y+ + + K G I+ +++ + EG
Sbjct: 77 DTSK-----FEELLTGQNLLLFTHMNAFELSLLLDKYKAKTYYKPGEIAQQEIVIPEGNT 131
Query: 143 PEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKV 202
P I +L + T + + + +D V K GD ++ E A +L+ L + + K+
Sbjct: 132 GLSPGPILSTFSKLKIPTRIQGNSIVITRDTVVAKPGDTISEELASLLQRLDIALKEVKI 191
>sp|P50345|RLA0_LUPLU 60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1
Length = 322
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 3/191 (1%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGK 79
E+K +L + +++Y I V + N+ + +L+++R + DS GKN +M ++
Sbjct: 9 EKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRI 68
Query: 80 SQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKE 139
E + + L G GL+FT +V Y+ A G ++ DV +
Sbjct: 69 HAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPIDVVVPP 128
Query: 140 GPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD-VLTPEQARILKLLKKKMA 198
G P + L + T +NKG V + + KKGD V + E A + KL + +
Sbjct: 129 GNTGLDPSQTS-FFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFS 187
Query: 199 KFKVLLYLWYN 209
V+L ++ N
Sbjct: 188 YGLVVLSVYDN 198
>sp|P57692|RLA0_THEAC Acidic ribosomal protein P0 homolog OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rplP0 PE=3 SV=1
Length = 314
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 93/196 (47%), Gaps = 17/196 (8%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNK-------VM 73
++K+ L +E+ + ++ ++ + +R +++D+R GKN+ +
Sbjct: 6 QQKKELVNEITQRIKASRSVAIVDTAGIRTRQIQDIR----------GKNRGKINLKVIK 55
Query: 74 AYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTE 133
L K+ E+ ++ + + GQ LL ++ ++ + + + G I+ E
Sbjct: 56 KTLLFKALENLGDEKLSKLKENSGGQIALLTSDLEPTEIYKIIESTFQKTAPRGGEIAPE 115
Query: 134 DVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
D+ ++ P + + +++GLQT + KG + + K+ KKG+ + ++A+IL++L
Sbjct: 116 DIVIQPMTTGFPPGPMMTEFQKVGLQTGVEKGKIAIKKETVFVKKGETIPKDKAKILEML 175
Query: 194 KKKMAKFKVLLYLWYN 209
+ K + + L Y+
Sbjct: 176 EIKPLEVGLQLLGLYS 191
>sp|P39097|RLA0_LEIIN 60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A
PE=3 SV=1
Length = 323
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 28/203 (13%)
Query: 23 KQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDV-RNDWKDSRFFFGKNKVMAYALGKSQ 81
K+ + LV + KY+ + + N+R+ ++ DV R + F GK + + K
Sbjct: 8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVGRALRAKAEFMMGKKTLQGKIVEKRA 67
Query: 82 E------------DEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGF 129
+ D+ E+ + L G GL+FTN + ++ D + + A+ G
Sbjct: 68 QAKDASPEAKHFNDQCEE-----YNLLSGNTGLIFTNNAVQEITSVLDAHRVKRAARVGA 122
Query: 130 ISTEDVELKEGPLPEFPHSIEPQ----LRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPE 185
IS DV + G +EP + L + T + KG+V + + V GD +
Sbjct: 123 ISPCDVIVAAG-----STGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNS 177
Query: 186 QARILKLLKKKMAKFKV-LLYLW 207
A +L+ L ++V +L +W
Sbjct: 178 TATLLQKLNISPFYYQVNVLSVW 200
>sp|Q94660|RLA0_PLAF8 60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate
7G8) GN=RPLP0 PE=2 SV=2
Length = 316
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 15/178 (8%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGK 79
++KQ ++L +++Y+ I + V N+ ++++ VR + + GKN + AL K
Sbjct: 8 QKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTRIRTALKK 67
Query: 80 SQE--DEIEKNIHVVSSALKGQCGLLFTNRSKDDVL----MWFDVYEDEDFAKSGFISTE 133
+ + +IEK + +V K G +F KDD+ + D A+ G I+
Sbjct: 68 NLQAVPQIEKLLPLV----KLNMGFVFC---KDDLSEIRNIILDNKSSSHPARLGVIAPI 120
Query: 134 DVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILK 191
DV + GP P S L LG+ T + KG + + + + K+G+ +T A +L+
Sbjct: 121 DVFIPPGPTGMDP-SHTSFLESLGISTKIVKGQIEIQEHVHLIKQGEKVTASSATLLR 177
>sp|P29764|RLA0_CHERU 60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1
Length = 321
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 2/172 (1%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGK 79
E+K +L + +++Y+ + + S N+ +++L+ +R + DS GKN +M ++
Sbjct: 9 EKKIAYDQKLCQLLDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNTMMKRSIRL 68
Query: 80 SQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKE 139
E+ +N+ V GL+FT + V Y+ A+ G ++ DV +
Sbjct: 69 HAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVAPIDVVVPP 128
Query: 140 GPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILK 191
G P + L + T +NKG V + + KKG+ + +A +L
Sbjct: 129 GNTGLDPSQTS-FFQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLA 179
>sp|P13553|RLA0_HALSA Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rplP0 PE=3
SV=1
Length = 352
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 82/172 (47%), Gaps = 18/172 (10%)
Query: 29 ELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGKSQEDEIEK 87
ELV +E Y+++ V +V + + +L+D+R + +N ++ AL +E
Sbjct: 22 ELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL-----EEAGD 76
Query: 88 NIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAK------SGFISTEDVELKEGP 141
+ ++ ++G+ GL+ TN + F +Y+ + +K +G ++ D+ + EG
Sbjct: 77 GLDTLTEYVEGEVGLVATNDNP------FGLYQQLENSKTPAPINAGEVAPNDIVVPEGD 130
Query: 142 LPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
P +L+ +G + +G + + D V ++G+ ++ + + +L L
Sbjct: 131 TGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSEL 182
>sp|B0R4W1|RLA0_HALS3 Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rplP0 PE=3 SV=1
Length = 352
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 82/172 (47%), Gaps = 18/172 (10%)
Query: 29 ELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGKSQEDEIEK 87
ELV +E Y+++ V +V + + +L+D+R + +N ++ AL +E
Sbjct: 22 ELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL-----EEAGD 76
Query: 88 NIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAK------SGFISTEDVELKEGP 141
+ ++ ++G+ GL+ TN + F +Y+ + +K +G ++ D+ + EG
Sbjct: 77 GLDTLTEYVEGEVGLVATNDNP------FGLYQQLENSKTPAPINAGEVAPNDIVVPEGD 130
Query: 142 LPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
P +L+ +G + +G + + D V ++G+ ++ + + +L L
Sbjct: 131 TGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSEL 182
>sp|P15826|RLA0_METVS Acidic ribosomal protein P0 homolog OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rplP0 PE=1 SV=2
Length = 336
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 126 KSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPE 185
K G I+ D+E+K G P +L+ +G+ ++KG + + +D V K+GDV++P+
Sbjct: 118 KGGAIAPCDIEVKSGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVAKEGDVISPK 177
Query: 186 QARILKLLKKK 196
A +L L K
Sbjct: 178 LAVVLSALGIK 188
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2
SV=1
Length = 315
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 86/194 (44%), Gaps = 16/194 (8%)
Query: 23 KQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGKSQ 81
K N ++++ ++ Y F+ N+ + +++ +R + + GKN +M A+
Sbjct: 10 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69
Query: 82 ED--EIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKE 139
E+ +EK + +KG G +FT +V + A++G I+ DV +
Sbjct: 70 ENNSALEKLL----PHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTV-- 123
Query: 140 GPLPEFPHSIEPQ----LRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKK 195
P + P+ + LG+ T +++G + + D + K GD + +A +L +L
Sbjct: 124 ---PAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 196 KMAKFKVLLYLWYN 209
F +++ Y+
Sbjct: 181 SPFSFGLIIQQVYD 194
>sp|Q2NEW2|RLA0_METST Acidic ribosomal protein P0 homolog OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rplP0 PE=3 SV=1
Length = 332
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 11/155 (7%)
Query: 40 IFVFSVQNMRNSKLKDVRNDWKDSRFF-FGKNKVMAYALGKSQEDEIEKNIHVVSSALKG 98
I + ++ ++ +L+ +R D+ + + AL S ++E+E ++ L+G
Sbjct: 25 IGIVNLADIPAKQLQTMRKSLGDNAILKMSRKNFIKIALENSDKEEVEG----LADYLEG 80
Query: 99 QCGLLFTNRSKDDVLMWFDVYED---EDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQ 155
Q ++FT K + F + ED E AK+G I+ D+ + G P I +L+Q
Sbjct: 81 QPAMVFT---KMNPFKLFKILEDSKTEAPAKAGSIAPADIVVPAGDTSFPPGPILGELQQ 137
Query: 156 LGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARIL 190
+G+ ++KG + + D + +G+ + A IL
Sbjct: 138 VGIPAKIDKGSIVVTDDAKIVDEGEEIPKAVADIL 172
>sp|C3MXH4|RLA0_SULIM Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rplP0 PE=3 SV=1
Length = 338
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 8/165 (4%)
Query: 29 ELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEKN 88
EL + ++ N I + S++ KL ++R + KV L K N
Sbjct: 23 ELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAII----KVTKNTLFKIAAKNAGIN 78
Query: 89 IHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEG--PLPEFP 146
I + L G +FT + M+F+ Y+ +A G + E+V + G +P P
Sbjct: 79 IEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGP 138
Query: 147 HSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILK 191
I +L +QT + G V + KD V K GDV+ E IL+
Sbjct: 139 --ILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQ 181
>sp|C4KIJ9|RLA0_SULIK Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rplP0 PE=3 SV=1
Length = 338
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 8/165 (4%)
Query: 29 ELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEKN 88
EL + ++ N I + S++ KL ++R + KV L K N
Sbjct: 23 ELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAII----KVTKNTLFKIAAKNAGIN 78
Query: 89 IHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEG--PLPEFP 146
I + L G +FT + M+F+ Y+ +A G + E+V + G +P P
Sbjct: 79 IEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGP 138
Query: 147 HSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILK 191
I +L +QT + G V + KD V K GDV+ E IL+
Sbjct: 139 --ILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQ 181
>sp|Q9Y8J3|RLA0_METVO Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus
voltae GN=rplP0 PE=3 SV=1
Length = 297
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 72/154 (46%), Gaps = 1/154 (0%)
Query: 38 NNIFVFSVQNMRNSKLKDVRNDWKDSRFF-FGKNKVMAYALGKSQEDEIEKNIHVVSSAL 96
N I + + + + +L+++R+ +DS +N +M A+ + E+ + + +
Sbjct: 29 NVIALIDMMEVPSVQLQEIRDTIRDSMTLKMSRNTLMKRAIEEVAEETGNPSFTKLIDCM 88
Query: 97 KGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQL 156
+ L+ T + + + + K+G + D+E+K G P +L+ +
Sbjct: 89 EKGAALIATEMNPFKLYKTLNESKSPAPIKAGATAPCDIEIKAGSTGMPPGPFLSELKAV 148
Query: 157 GLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARIL 190
GL + KG + + +D V K+GDV++ + A +L
Sbjct: 149 GLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVL 182
>sp|A5UKU8|RLA0_METS3 Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1
Length = 335
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 13/208 (6%)
Query: 28 DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFF-FGKNKVMAYALGKSQEDEIE 86
+EL ++KY+ I + + N+ +L+++R + K ++ AL +
Sbjct: 13 NELKSLIDKYDVIGIVDLLNIPAKQLQEMRKSLHNKAVIRMSKKNLIDLALEDCNASK-- 70
Query: 87 KNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDF---AKSGFISTEDVELKEGPLP 143
NI +S ++GQ ++ T + + + ED AK G I+T+D+ + EG
Sbjct: 71 NNIVDLSEHMEGQVAVIATEMNP---FKLYKILEDSKTSAPAKPGAIATDDIVIPEGDTG 127
Query: 144 EFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVL 203
P +L+Q+G+ ++KG + + K+ + + G+ ++ A L + + +
Sbjct: 128 FEPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDINPMEVGID 187
Query: 204 LYLWYNKKEGTFEN---LLDREKTPMDI 228
L Y ++E + + +D E+T D+
Sbjct: 188 LRAVY-EEEAIYTSEVLAIDEEQTLADV 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,066,294
Number of Sequences: 539616
Number of extensions: 3887395
Number of successful extensions: 9189
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 9121
Number of HSP's gapped (non-prelim): 111
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)