Query psy15723
Match_columns 243
No_of_seqs 191 out of 1222
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 19:47:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0816|consensus 100.0 1E-69 2.3E-74 458.1 18.9 216 1-216 1-216 (223)
2 PTZ00240 60S ribosomal protein 100.0 5.2E-61 1.1E-65 437.9 21.6 205 19-226 4-219 (323)
3 PTZ00135 60S acidic ribosomal 100.0 1.2E-60 2.5E-65 435.2 22.0 205 16-225 3-211 (310)
4 cd05795 Ribosomal_P0_L10e Ribo 100.0 8E-58 1.7E-62 386.6 19.9 174 21-197 1-175 (175)
5 cd05796 Ribosomal_P0_like Ribo 100.0 8.6E-55 1.9E-59 364.3 18.2 163 21-183 1-163 (163)
6 PRK04019 rplP0 acidic ribosoma 100.0 1.9E-55 4.2E-60 404.6 15.6 198 18-221 3-201 (330)
7 KOG0815|consensus 100.0 1.8E-47 3.9E-52 326.9 17.0 206 16-226 3-212 (245)
8 COG0244 RplJ Ribosomal protein 100.0 1.5E-32 3.2E-37 232.5 6.8 168 19-211 4-173 (175)
9 cd00379 Ribosomal_L10_P0 Ribos 99.9 1.8E-24 4E-29 178.0 8.4 120 21-148 1-125 (155)
10 PF00466 Ribosomal_L10: Riboso 99.9 3.1E-23 6.8E-28 159.5 9.3 96 18-120 1-99 (100)
11 PRK00099 rplJ 50S ribosomal pr 99.9 7.9E-22 1.7E-26 166.1 11.2 97 19-122 2-100 (172)
12 cd05797 Ribosomal_L10 Ribosoma 99.9 1.1E-21 2.3E-26 162.8 11.2 97 19-122 1-99 (157)
13 KOG4241|consensus 97.1 0.0019 4E-08 56.2 7.7 85 27-119 79-165 (245)
14 PRK04019 rplP0 acidic ribosoma 96.9 0.00022 4.7E-09 66.2 -0.4 167 24-209 35-217 (330)
15 PF07697 7TMR-HDED: 7TM-HD ext 82.0 1 2.2E-05 38.3 2.3 27 169-195 193-219 (222)
16 PTZ00329 eukaryotic translatio 73.7 12 0.00027 31.3 6.3 53 157-210 60-123 (155)
17 PF14226 DIOX_N: non-haem diox 64.7 18 0.00039 27.4 5.2 46 10-60 4-49 (116)
18 PF08496 Peptidase_S49_N: Pept 58.4 16 0.00035 30.5 4.1 25 36-60 96-121 (155)
19 PLN00208 translation initiatio 51.3 21 0.00046 29.5 3.7 46 157-203 60-116 (145)
20 PF08800 VirE_N: VirE N-termin 50.8 18 0.00038 29.2 3.2 31 31-61 24-54 (136)
21 KOG3414|consensus 46.2 51 0.0011 27.0 5.0 77 23-118 41-118 (142)
22 cd03067 PDI_b_PDIR_N PDIb fami 45.2 94 0.002 24.5 6.2 65 50-122 6-73 (112)
23 COG1480 Predicted membrane-ass 38.9 26 0.00057 35.9 2.9 28 172-199 244-271 (700)
24 PF06781 UPF0233: Uncharacteri 37.8 12 0.00025 28.4 0.1 15 1-15 1-15 (87)
25 cd03113 CTGs CTP synthetase (C 37.2 41 0.00089 30.4 3.6 54 182-235 18-77 (255)
26 smart00652 eIF1a eukaryotic tr 35.6 58 0.0013 24.2 3.7 39 156-195 32-81 (83)
27 COG1419 FlhF Flagellar GTP-bin 35.3 3.5E+02 0.0075 26.2 9.6 92 33-139 278-385 (407)
28 PRK00159 putative septation in 34.3 14 0.00031 27.9 0.2 13 1-13 1-13 (87)
29 COG5133 Uncharacterized conser 34.2 86 0.0019 26.2 4.7 78 107-187 54-150 (181)
30 PLN02276 gibberellin 20-oxidas 33.8 99 0.0021 29.0 5.8 52 9-61 43-94 (361)
31 PF14552 Tautomerase_2: Tautom 33.7 61 0.0013 24.0 3.5 36 1-36 23-58 (82)
32 TIGR01672 AphA HAD superfamily 30.5 3.2E+02 0.0069 24.1 8.2 93 27-121 51-157 (237)
33 COG0504 PyrG CTP synthase (UTP 30.4 57 0.0012 32.3 3.6 53 182-234 19-77 (533)
34 smart00455 RBD Raf-like Ras-bi 28.2 62 0.0013 23.1 2.7 33 173-205 13-45 (70)
35 cd04456 S1_IF1A_like S1_IF1A_l 27.8 93 0.002 22.8 3.6 37 157-194 28-76 (78)
36 PLN03176 flavanone-3-hydroxyla 27.7 2E+02 0.0044 22.5 5.8 37 22-59 52-88 (120)
37 PF02196 RBD: Raf-like Ras-bin 27.1 94 0.002 22.2 3.4 34 173-206 14-47 (71)
38 TIGR00337 PyrG CTP synthase. C 27.1 62 0.0013 32.3 3.3 53 182-234 19-77 (525)
39 cd01760 RBD Ubiquitin-like dom 27.0 72 0.0016 23.1 2.8 34 173-206 13-46 (72)
40 PRK04012 translation initiatio 27.0 79 0.0017 24.4 3.2 39 156-195 48-97 (100)
41 COG1576 Uncharacterized conser 26.8 2.5E+02 0.0053 23.6 6.3 49 20-68 50-104 (155)
42 PRK05667 dnaG DNA primase; Val 26.7 57 0.0012 32.8 3.0 55 131-211 252-306 (580)
43 PLN03178 leucoanthocyanidin di 26.0 1.6E+02 0.0035 27.5 5.7 49 10-59 51-99 (360)
44 PLN02393 leucoanthocyanidin di 25.0 1.9E+02 0.0042 27.0 6.1 49 10-59 55-103 (362)
45 COG2082 CobH Precorrin isomera 24.1 5E+02 0.011 22.8 8.1 126 30-166 36-188 (210)
46 PF03453 MoeA_N: MoeA N-termin 23.3 75 0.0016 26.2 2.7 24 171-194 139-162 (162)
47 PRK03573 transcriptional regul 23.0 1.2E+02 0.0026 23.9 3.8 50 2-61 82-131 (144)
48 PRK01631 hypothetical protein; 22.8 1.1E+02 0.0023 22.7 3.1 57 5-61 13-73 (76)
49 PLN02327 CTP synthase 22.7 80 0.0017 31.7 3.1 53 182-234 19-77 (557)
50 KOG2387|consensus 22.7 1.1E+02 0.0023 30.3 3.9 52 182-233 19-76 (585)
51 PRK05380 pyrG CTP synthetase; 22.6 94 0.002 31.1 3.5 54 182-235 20-79 (533)
52 PRK00103 rRNA large subunit me 22.4 2.6E+02 0.0056 23.2 5.7 39 23-61 53-93 (157)
53 PF04413 Glycos_transf_N: 3-De 22.1 4.7E+02 0.01 21.9 7.4 128 38-201 22-175 (186)
54 TIGR00762 DegV EDD domain prot 22.1 5.6E+02 0.012 22.7 9.5 84 24-122 65-151 (275)
55 PF06418 CTP_synth_N: CTP synt 21.2 20 0.00043 32.7 -1.3 52 182-233 19-76 (276)
56 PLN02299 1-aminocyclopropane-1 21.1 2.4E+02 0.0053 25.9 5.8 56 1-60 1-56 (321)
57 PF03993 DUF349: Domain of Unk 20.8 64 0.0014 22.6 1.6 36 19-61 32-67 (77)
58 cd05792 S1_eIF1AD_like S1_eIF1 20.6 1.7E+02 0.0037 21.6 3.8 21 157-178 28-49 (78)
59 cd00887 MoeA MoeA family. Memb 20.5 1.6E+02 0.0035 27.8 4.6 30 171-200 136-165 (394)
60 COG4224 Uncharacterized protei 20.1 1.6E+02 0.0035 21.7 3.5 57 5-61 14-74 (77)
No 1
>KOG0816|consensus
Probab=100.00 E-value=1e-69 Score=458.09 Aligned_cols=216 Identities=57% Similarity=0.945 Sum_probs=214.4
Q ss_pred CCCCcccceeeccccccCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhCCceEEEEehHHHHHHhhcc
Q psy15723 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKS 80 (243)
Q Consensus 1 mp~skr~~~v~ltk~~Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr~s~~~vgKNtLmk~AL~~~ 80 (243)
||||||+|.|+||+|.||++|+|++++++|++++++|+++|||++.|||+..+++||.+|++|+|+||||++|.+|||.+
T Consensus 1 MprSkRdk~vtL~kt~KKg~e~K~~i~~~ir~~vd~Y~~v~Vf~~~nMRn~~lk~iR~~~k~sr~f~GknKVm~vaLG~~ 80 (223)
T KOG0816|consen 1 MPRSKRDKKVTLTKTAKKGKEKKEAIVEEIREAVDKYPYVFVFEVPNMRNTTLKEIRQDFKNSRFFFGKNKVMQVALGRS 80 (223)
T ss_pred CCccccccccchhHhhhhhHHHHHHHHHHHHHHHhhCCeEEEEEcCCcchHHHHHHHHHhhccceecchhhHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhchhhhhhhccCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCcee
Q psy15723 81 QEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQT 160 (243)
Q Consensus 81 ~e~e~~~~l~~L~~~L~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgipt 160 (243)
.++||++++++++.+|+|.+||+|||.++.+|.++|.+|...+|||+|++||++|+||+||+.+++|+|+|+||+|||||
T Consensus 81 ~~dE~~~~l~klskll~G~~GLlFTd~~keeV~e~f~sy~~~DyaR~g~vA~~Tv~ip~Gpl~~f~hsmEP~lRklglPt 160 (223)
T KOG0816|consen 81 REDEYKENLYKLSKLLKGSVGLLFTDMSKEEVIEWFRSYVEEDYARAGDVAPETVTIPEGPLEQFAHSMEPQLRKLGLPT 160 (223)
T ss_pred chhhHHHHHHHhhhhccCceEEEecCCCHHHHHHHHHHHHHHhhhccCCcCcceEeecCcchhhcccccchhhHhhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCceEEEccCeeEeecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEE
Q psy15723 161 NLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFE 216 (243)
Q Consensus 161 ki~kG~I~i~~d~~v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~ 216 (243)
++++|+|+|.+||+||++|++++++||+||++||+++++|++.+.++|++.+|.++
T Consensus 161 ~lk~G~vtL~sdy~VCeEG~~Ld~rqA~ILKlfg~kma~Fkl~~~~~w~~s~~~~~ 216 (223)
T KOG0816|consen 161 KLKKGVVTLLSDYTVCEEGDVLDPRQAKILKLFGKKMAKFKLAVKAYWSKSSGQKE 216 (223)
T ss_pred eecCCeEEEecCceeecCCcccCHHHHHHHHHHhHhhHhheEEEEEEEcCccceee
Confidence 99999999999999999999999999999999999999999999999999888776
No 2
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=100.00 E-value=5.2e-61 Score=437.86 Aligned_cols=205 Identities=22% Similarity=0.338 Sum_probs=190.4
Q ss_pred chHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhCC-ceEEEEehHHHHHHhhccchhhhhhchhhh-----
Q psy15723 19 GLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGKSQEDEIEKNIHVV----- 92 (243)
Q Consensus 19 ~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr~-s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L----- 92 (243)
.++||.+++++|++++++|++||||+++|++++|||+||+.||| ++|+|||||||++||+++.++++.+++++|
T Consensus 4 ~~~~K~~~v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~ 83 (323)
T PTZ00240 4 ITTAKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQC 83 (323)
T ss_pred hhHHHHHHHHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhhc
Confidence 36789999999999999999999999999999999999999995 899999999999999999876655556666
Q ss_pred --hhhccCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEc
Q psy15723 93 --SSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLF 170 (243)
Q Consensus 93 --~~~L~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~ 170 (243)
+++|+||+||+|||.||+++.++|++|++++|||+|++||+||+||+|||++.|+ ++++||+|||||+|++|+|+|.
T Consensus 84 ~~~~~l~GnvgliFTn~~p~ev~~~l~~~k~~a~AraG~IAp~dVvvpaG~T~~~P~-~~s~fq~LGIpTkI~kGkIeI~ 162 (323)
T PTZ00240 84 EEKNLLSGNTGLIFTNNEVQEITSVLDSHRVKAPARVGAIAPCDVIVPAGSTGMEPT-QTSFFQALNIATKIAKGMVEIV 162 (323)
T ss_pred cccccccCCEEEEEeCCCHHHHHHHHHHcCCcccccCCCCCCceEEECCCCCCCCCc-chHHHHHcCCCeEecCcEEEEe
Confidence 4999999999999999999999999999999999999999999999999997776 7999999999999999999999
Q ss_pred cCeeEeecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEE---ccCCcCCcc
Q psy15723 171 KDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFEN---LLDREKTPM 226 (243)
Q Consensus 171 ~d~~v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~---~~~~~~~~~ 226 (243)
+|++||++||+||++||+||++|||+|++|+|.++++||+ |.+|. |+++++++.
T Consensus 163 ~d~~v~k~Ge~V~~~~A~LL~~L~IkP~~~gl~l~~vyd~--g~i~~~~vL~i~~e~~~ 219 (323)
T PTZ00240 163 TEKKVLSVGDKVDNSTATLLQKLNISPFYYQVEVLSVWDR--GVLFTREDLSMTEDVVE 219 (323)
T ss_pred cCeEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEeC--CeecCHHHcCCCHHHHH
Confidence 9999999999999999999999999999999999999984 67886 555555443
No 3
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=100.00 E-value=1.2e-60 Score=435.18 Aligned_cols=205 Identities=22% Similarity=0.355 Sum_probs=192.0
Q ss_pred ccCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-CceEEEEehHHHHHHhhccchhhhhhchhhhhh
Q psy15723 16 VKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSS 94 (243)
Q Consensus 16 ~Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~ 94 (243)
++..|+||.+++++|++++++|++++|++|+||+++|+++||+.|| +++|+|||||||++||+++.++ .++++.|.+
T Consensus 3 ~~~~re~K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~--~~~l~~L~~ 80 (310)
T PTZ00135 3 KPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEE--LPELEKLLP 80 (310)
T ss_pred cchhHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCccc--ccChHHHHh
Confidence 3456899999999999999999999999999999999999999999 5899999999999999998643 568999999
Q ss_pred hccCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCee
Q psy15723 95 ALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHT 174 (243)
Q Consensus 95 ~L~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~ 174 (243)
+|+|++||+|||+||.+++++|.+|++++|||+|.+||+||+||+|||++.|+ ++++||+|||||+|++|+|+|.+|++
T Consensus 81 ~LkG~~gliFTn~dp~ev~k~l~~~k~~~~AKaG~iAp~dv~ip~G~t~~~P~-~~~~fq~LgipTkI~kG~I~I~~d~~ 159 (310)
T PTZ00135 81 HVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPS-QTSFFQALGIATKIVKGQIEITNEVH 159 (310)
T ss_pred hccCCEEEEEECCCHHHHHHHHHHcCCccccccCCCCCceEEEcCCCCCCCcc-hhhHHHHcCCceEecCCeEEEecCeE
Confidence 99999999999999999999999999999999999999999999999987776 69999999999999999999999999
Q ss_pred EeecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEE---ccCCcCCc
Q psy15723 175 VCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFEN---LLDREKTP 225 (243)
Q Consensus 175 v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~---~~~~~~~~ 225 (243)
||++||+||++||+||++|||+|++|+|.++++||+ |.+|. |+++++++
T Consensus 160 v~k~Ge~v~~~~A~LL~~L~I~p~~~~l~~~~~yd~--g~~~~~~vL~i~~e~~ 211 (310)
T PTZ00135 160 LIKEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDN--GSIYDAKVLDITDEDI 211 (310)
T ss_pred EecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEEC--CeEeCHHHcCCCHHHH
Confidence 999999999999999999999999999999999995 68987 55555544
No 4
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=100.00 E-value=8e-58 Score=386.58 Aligned_cols=174 Identities=24% Similarity=0.423 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-CceEEEEehHHHHHHhhccchhhhhhchhhhhhhccCc
Q psy15723 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQ 99 (243)
Q Consensus 21 e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~G~ 99 (243)
+||.++|++|++++++|++++|++|+|++++|+++||+.|| +++|+|||||||++||++++ ++.++++.|+++|+|+
T Consensus 1 ~~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~--~~~~~~~~L~~~l~G~ 78 (175)
T cd05795 1 EWKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLG--DENPELEKLLPYLKGN 78 (175)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhCCCEEEEechHHHHHHHHhcc--cccccHHHHHHHhcCC
Confidence 68999999999999999999999999999999999999999 58999999999999999986 4567899999999999
Q ss_pred eEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCeeEeecC
Q psy15723 100 CGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKG 179 (243)
Q Consensus 100 ~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~v~k~G 179 (243)
+||+||++||++++++|++|+.++|||+|++||+||+||+|||+ +||+++++||+|||||+|++|+|+|.+||+||++|
T Consensus 79 ~~liFt~~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~t~-~~p~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G 157 (175)
T cd05795 79 VGFIFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPAGPTG-MPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKG 157 (175)
T ss_pred EEEEEECCCHHHHHHHHHHcCCcccccCCCccCceEEEcCCCcC-CCCCchHHHHHcCCceEEecCEEEEecCeEEecCC
Confidence 99999999999999999999999999999999999999999999 45566889999999999999999999999999999
Q ss_pred cccCHHHHHHHHHcCcCc
Q psy15723 180 DVLTPEQARILKLLKKKM 197 (243)
Q Consensus 180 e~vs~~qA~lL~~lgikp 197 (243)
|+||++||+||++|||+|
T Consensus 158 ~~v~~~~A~lL~~l~i~P 175 (175)
T cd05795 158 EKVGASEATLLNKLNIKP 175 (175)
T ss_pred CCcCHHHHHHHHHcCCCC
Confidence 999999999999999998
No 5
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=100.00 E-value=8.6e-55 Score=364.28 Aligned_cols=163 Identities=60% Similarity=0.998 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhCCceEEEEehHHHHHHhhccchhhhhhchhhhhhhccCce
Q psy15723 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQC 100 (243)
Q Consensus 21 e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~G~~ 100 (243)
+||.+++++|+++|++|+++||++|+|++++|+++||+.||+++|+|||||||++||++++++++.++++.|+++|+|++
T Consensus 1 e~K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~~~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~~ 80 (163)
T cd05796 1 ELKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDSRFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQV 80 (163)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcCCEEEEEchHHHHHHHhhCccccccccHHHHHHHhCCCE
Confidence 58999999999999999999999999999999999999999779999999999999999988888899999999999999
Q ss_pred EEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCeeEeecCc
Q psy15723 101 GLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180 (243)
Q Consensus 101 allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~v~k~Ge 180 (243)
||+||++||++++++|.+|+.++|||+|++||+||+||+|||+++||||+|+||+|||||+|++|+|+|.+|++||++||
T Consensus 81 ~lift~~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lgiptki~~G~I~i~~d~~v~k~G~ 160 (163)
T cd05796 81 GLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPEGPLEQFPHSMEPQLRKLGLPTKLKKGVITLEADYVVCEEGK 160 (163)
T ss_pred EEEEECCCHHHHHHHHHHcCCcccccCCCCCCceEEEeCCCCCCCCCCcchHHHHcCCCeEEeCCEEEEecCcEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy15723 181 VLT 183 (243)
Q Consensus 181 ~vs 183 (243)
+||
T Consensus 161 ~v~ 163 (163)
T cd05796 161 VLT 163 (163)
T ss_pred CCc
Confidence 986
No 6
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=100.00 E-value=1.9e-55 Score=404.65 Aligned_cols=198 Identities=25% Similarity=0.370 Sum_probs=189.9
Q ss_pred CchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-CceEEEEehHHHHHHhhccchhhhhhchhhhhhhc
Q psy15723 18 KGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSAL 96 (243)
Q Consensus 18 k~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L 96 (243)
+.++||.++|++|+++|++|+++||++|+|++++|+|+||+.|| .++|+|+|||||++||+++.+ ++++.|.++|
T Consensus 3 ~~~e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~----~~~~~L~~~l 78 (330)
T PRK04019 3 HVPEWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGE----EDLEKLEDYL 78 (330)
T ss_pred chHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCc----ccHHHHHhhc
Confidence 55899999999999999999999999999999999999999999 489999999999999999863 5799999999
Q ss_pred cCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCeeEe
Q psy15723 97 KGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVC 176 (243)
Q Consensus 97 ~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~v~ 176 (243)
+|++||+|||+||++++++|.+|+.++|||+|++||+||+||+|||++.||+|+++||+|||||+|++|+|+|.+|++||
T Consensus 79 ~G~~alift~~dp~~v~k~l~~~~~~~~ak~G~iA~~divip~G~t~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~ 158 (330)
T PRK04019 79 EGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVPAGPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVA 158 (330)
T ss_pred cCCEEEEEECCCHHHHHHHHHHcCCcccCCCCCCCCCeEEEcCCCCCCCCcccHHHHHHcCCCeEecCCEEEEecCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEEccCC
Q psy15723 177 KKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLDR 221 (243)
Q Consensus 177 k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~~~~~ 221 (243)
++|++|||+||++|++|||+|++|++++.++|++ |.++..+.+
T Consensus 159 ~~G~~v~~~~a~lL~~LgI~p~~~~~~i~a~~~~--G~~~~~~~l 201 (330)
T PRK04019 159 KAGEVISPELANVLQKLGIKPIEVGLDLKAAYED--GVIYTPEVL 201 (330)
T ss_pred cCCCCcCHHHHHHHHHcCCCHHHhhhHHHHHHhc--CCccCHHHc
Confidence 9999999999999999999999999999999984 678875544
No 7
>KOG0815|consensus
Probab=100.00 E-value=1.8e-47 Score=326.88 Aligned_cols=206 Identities=21% Similarity=0.341 Sum_probs=192.7
Q ss_pred ccCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-CceEEEEehHHHHHHhhccchhhhhhchhhhhh
Q psy15723 16 VKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSS 94 (243)
Q Consensus 16 ~Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~ 94 (243)
+.-.++||..+..++++++++|+.++++..+|+.+.|||+||+.|| .+.+.|||||+|++|+....+. .+.++.+.+
T Consensus 3 ~~~~~e~k~~y~~K~~~L~~~y~~~~~v~~dnv~s~ql~~ir~~lrg~a~vlmgkntm~rrair~~~~~--~~~~~~llp 80 (245)
T KOG0815|consen 3 RADKAEKKAVYFTKLRQLFEEYPKCFVVGADNVGSTQLQNIRKQLRGDAVVLMGKNTMMRRAIRGHLEN--NPALEKLLP 80 (245)
T ss_pred chhhhHHHHHHHHHHHHHHHhcCceEEEeecchhhHHHHHHHHHhcCceeeeechhHHHHHHHHhccCC--cHHHHhhcc
Confidence 4456799999999999999999999999999999999999999999 5999999999999999987643 467899999
Q ss_pred hccCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCee
Q psy15723 95 ALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHT 174 (243)
Q Consensus 95 ~L~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~ 174 (243)
+++|++|++||+.|..++.+.+.++++.++||+|.+||+||+||++.|++-| ...++||+|||||||.+|+|||.+|+.
T Consensus 81 ~~~g~vgfvftk~~L~ei~~~i~~n~~~apar~GaiAp~dV~V~~~nTg~~P-~ktsfFQaLgIpTKIsrGtiEIlsdV~ 159 (245)
T KOG0815|consen 81 VVKGNVGFVFTKGDLKEIRKEIIENKVGAPARVGAIAPIDVTVPAQNTGLGP-EKTSFFQALGIPTKISRGTIEILSDVQ 159 (245)
T ss_pred ceeeceeEEEEeccHHHHHHHHHhcccccccccCCcCCceEEeccccCCCCc-chhhhhhhcCCceeeecceEEecccce
Confidence 9999999999999999999999999999999999999999999999999888 578999999999999999999999999
Q ss_pred EeecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEE---ccCCcCCcc
Q psy15723 175 VCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFEN---LLDREKTPM 226 (243)
Q Consensus 175 v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~---~~~~~~~~~ 226 (243)
++++||+|++++|.||.+|||+||.|||.+..+||+ |.+|. +|++|||+.
T Consensus 160 lik~GDKVGaSEAtLLnmL~IsPFsyGLvv~qVyDn--Gsiy~pevLDiteE~l~ 212 (245)
T KOG0815|consen 160 LIKTGDKVGASEATLLNMLNISPFSYGLVVQQVYDN--GSIYNPEVLDITEEDLF 212 (245)
T ss_pred eeccCCccChhHHHHHhhhCCCccccceEEEEEecC--CcccChhhcCCcHHHHH
Confidence 999999999999999999999999999999999994 78885 677776653
No 8
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.5e-32 Score=232.45 Aligned_cols=168 Identities=19% Similarity=0.271 Sum_probs=159.3
Q ss_pred chHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchhhhhhhc
Q psy15723 19 GLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSAL 96 (243)
Q Consensus 19 ~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L 96 (243)
.++||.++|+++++.|++|++++|+||+|+++.|+++||++|| ++.++|+||||+++||+++. ++.|.++|
T Consensus 4 ~~e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~lkV~KNtL~~rAl~~~~-------~e~l~~~l 76 (175)
T COG0244 4 AREWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALEEAG-------LEGLDDLL 76 (175)
T ss_pred cHHHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhCCcEEEEEhhHHHHHHHHhcc-------hhhHHHhc
Confidence 4699999999999999999999999999999999999999999 49999999999999999984 66699999
Q ss_pred cCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCeeEe
Q psy15723 97 KGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVC 176 (243)
Q Consensus 97 ~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~v~ 176 (243)
+||+|++||++||.+++|+|.+|.++. |++++.++.+++|+ .+++|+.+..|+|.+.++.+++
T Consensus 77 ~Gp~ai~fs~~dp~~~~K~~~~f~k~~----~~~~~~~~~~~eg~-------------~l~~~~v~~~aklp~~~el~~~ 139 (175)
T COG0244 77 KGPTAIAFSNEDPVAAAKLLKDFAKEA----GDKAPIKGGVPEGK-------------VLGAAEVIALAKLPSKEELVVM 139 (175)
T ss_pred cCCeEEEEecCCHHHHHHHHHHHhhhh----cccceEEEEEecCc-------------ccCHHHHHHHhcCCcHHHHHHH
Confidence 999999999999999999998776655 99999999999997 4899999999999999999999
Q ss_pred ecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCC
Q psy15723 177 KKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKK 211 (243)
Q Consensus 177 k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~ 211 (243)
..|....|.. +++..|++.|..+++.+.++|+++
T Consensus 140 l~g~~~ap~~-~~~~~L~a~~~~~~~~~~a~~~~g 173 (175)
T COG0244 140 LLGVLQAPAT-KLLRALKAVPDKVGLKLLAAYEKG 173 (175)
T ss_pred HHHhhHhhHH-HHHHHHhccHHHHhhHHHHhhccC
Confidence 9999999999 999999999999999999999864
No 9
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=99.91 E-value=1.8e-24 Score=178.03 Aligned_cols=120 Identities=26% Similarity=0.397 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchhhhhhhccC
Q psy15723 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKG 98 (243)
Q Consensus 21 e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~G 98 (243)
++|.++++++++++++|+.+++++|+|++++++++||+.|+ +++++|+|||||++||++++ ++.+.++|+|
T Consensus 1 ~~K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KNtl~~~Al~~t~-------~~~~~~~l~G 73 (155)
T cd00379 1 EKKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKGTG-------FEELKPLLKG 73 (155)
T ss_pred CchHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEEehHHHHHHHcCCC-------ccchhhhCcC
Confidence 47999999999999999999999999999999999999999 48999999999999999985 6788889999
Q ss_pred ceEEEEecCCHHHHHHHHhhcCcc---cccccCCCccceEEEcCCCCCCCCCC
Q psy15723 99 QCGLLFTNRSKDDVLMWFDVYEDE---DFAKSGFISTEDVELKEGPLPEFPHS 148 (243)
Q Consensus 99 ~~allFTn~dp~~v~k~l~~~~~~---~~Ak~G~iA~~dvvI~~G~t~~~p~~ 148 (243)
++|++||++||.++++++.+|... .++++|.++ .+|+.|.+++...+.|
T Consensus 74 ~~~~~f~~~~~~~~~k~~~~~~k~~~~~~~k~g~~~-~~v~~~~~~~~l~~lp 125 (155)
T cd00379 74 PTALAFTNEDPVEVAKVLKDFAKENKKLFAKGGVVA-GKVLDPAGVTALAKLP 125 (155)
T ss_pred CEEEEEeCCChHHHHHHHHHHHHhCCCceEEEEEEc-CEecCHHHHHHHhcCC
Confidence 999999999999999999999988 899999999 8999999977655544
No 10
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=99.89 E-value=3.1e-23 Score=159.47 Aligned_cols=96 Identities=22% Similarity=0.401 Sum_probs=89.9
Q ss_pred CchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchh-hhhh
Q psy15723 18 KGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIH-VVSS 94 (243)
Q Consensus 18 k~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~-~L~~ 94 (243)
++|++|.++++++++.|++|+.+++++|+|++++|+++||++|| |++++|+|||||++||++++ .+ .|.+
T Consensus 1 m~~~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KN~l~~~Al~~~~-------~~~~l~~ 73 (100)
T PF00466_consen 1 MTKEKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKKGGKFKVVKNTLMKKALKNTG-------FEEALSP 73 (100)
T ss_dssp -SCHHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEEEEECSHHHHHHHHHHHH-------TSSSSSC
T ss_pred CcHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcEEEEecHHHHHHHHhcCc-------cccCccc
Confidence 36799999999999999999999999999999999999999999 69999999999999999985 33 5899
Q ss_pred hccCceEEEEecCCHHHHHHHHhhcC
Q psy15723 95 ALKGQCGLLFTNRSKDDVLMWFDVYE 120 (243)
Q Consensus 95 ~L~G~~allFTn~dp~~v~k~l~~~~ 120 (243)
+|+|++|++||++||.++++++.+|.
T Consensus 74 ~l~G~~~~if~~~d~~~~~k~l~~~~ 99 (100)
T PF00466_consen 74 LLKGPTALIFSNEDPFEIAKILKKFA 99 (100)
T ss_dssp CTSSSEEEEEESSSHHHHHHHHHHST
T ss_pred cccCCEEEEEECCCHHHHHHHHHHhc
Confidence 99999999999999999999999875
No 11
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=99.87 E-value=7.9e-22 Score=166.12 Aligned_cols=97 Identities=15% Similarity=0.258 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchhhhhhhc
Q psy15723 19 GLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSAL 96 (243)
Q Consensus 19 ~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L 96 (243)
+|++|.++++++++++++|+.+++++|+|++++|+++||+.|| +++++|+|||||++||+++ +++.|.++|
T Consensus 2 ~r~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~~-------~~~~l~~~l 74 (172)
T PRK00099 2 NREEKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRALEGT-------GFEGLDDLL 74 (172)
T ss_pred CHHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcC-------CchhhhhhC
Confidence 5789999999999999999999999999999999999999999 5899999999999999998 488999999
Q ss_pred cCceEEEEecCCHHHHHHHHhhcCcc
Q psy15723 97 KGQCGLLFTNRSKDDVLMWFDVYEDE 122 (243)
Q Consensus 97 ~G~~allFTn~dp~~v~k~l~~~~~~ 122 (243)
+|++|++||++||.++++++.+|.+.
T Consensus 75 ~G~~al~fs~~d~~~~~k~l~~f~K~ 100 (172)
T PRK00099 75 KGPTAIAFSYEDPVAAAKVLKDFAKD 100 (172)
T ss_pred cCCeEEEEeCCChHHHHHHHHHHHhh
Confidence 99999999999999999999988653
No 12
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=99.87 E-value=1.1e-21 Score=162.77 Aligned_cols=97 Identities=16% Similarity=0.285 Sum_probs=92.1
Q ss_pred chHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchhhhhhhc
Q psy15723 19 GLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSAL 96 (243)
Q Consensus 19 ~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L 96 (243)
.+++|.++++++++++++|+.+++++|+|++++|+++||++|| |++++|+|||||++||++++ ++.|.++|
T Consensus 1 ~~~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~t~-------~~~l~~~l 73 (157)
T cd05797 1 NREKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGTG-------FEDLDDLL 73 (157)
T ss_pred ChHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCC-------chhhHhhC
Confidence 3789999999999999999999999999999999999999999 58999999999999999984 78999999
Q ss_pred cCceEEEEecCCHHHHHHHHhhcCcc
Q psy15723 97 KGQCGLLFTNRSKDDVLMWFDVYEDE 122 (243)
Q Consensus 97 ~G~~allFTn~dp~~v~k~l~~~~~~ 122 (243)
+|++|++||++||.++++++.+|.+.
T Consensus 74 ~G~~al~f~~~d~~~~~k~l~~f~k~ 99 (157)
T cd05797 74 KGPTAIAFSEEDPVAAAKVLKDFAKE 99 (157)
T ss_pred cCCEEEEEeCCChHHHHHHHHHHHHh
Confidence 99999999999999999999988764
No 13
>KOG4241|consensus
Probab=97.15 E-value=0.0019 Score=56.16 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=75.6
Q ss_pred HHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchhhhhhhccCceEEEE
Q psy15723 27 RDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLF 104 (243)
Q Consensus 27 v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~G~~allF 104 (243)
.-++...++++..+.|+.+--+++..+--.|..|| +..|+..-|++++.++++++ ++.|.+++.||.+++|
T Consensus 79 ~re~~~v~~~~R~~Avcq~~~v~a~d~~~~r~QLrk~ni~~ksygnkIlk~~~~~t~-------y~~l~plfvgnh~ill 151 (245)
T KOG4241|consen 79 LREDWMVREEFRVMAVCQFLPVPARDLWFARNQLRKKNIEFKSYGNKILKKIFDKTP-------YSSLNPLFVGNHAILL 151 (245)
T ss_pred HHHHHHHHhhhhheeeeecccCcHHHHHHHHHHHHhccchhhhchHHHHHHHHhcCc-------hhhhhhheeccceEEE
Confidence 34567778999999999999999999999999999 69999999999999999985 8999999999999999
Q ss_pred ecCCHHHHHHHHhhc
Q psy15723 105 TNRSKDDVLMWFDVY 119 (243)
Q Consensus 105 Tn~dp~~v~k~l~~~ 119 (243)
+. |+.+++.++...
T Consensus 152 ~~-d~~kik~~lri~ 165 (245)
T KOG4241|consen 152 AK-DISKIKSILRIT 165 (245)
T ss_pred cC-ChHHHHHHHHHH
Confidence 84 677788777644
No 14
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=96.87 E-value=0.00022 Score=66.21 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhhCCeEEEEEeCC----CCc---HHHHHHHHhhCC-ceEEEEehHH--HHHHhhccchhhh-hhchhhh
Q psy15723 24 QNLRDELVKAVEKYNNIFVFSVQN----MRN---SKLKDVRNDWKD-SRFFFGKNKV--MAYALGKSQEDEI-EKNIHVV 92 (243)
Q Consensus 24 ~~~v~~l~e~l~~y~~v~v~~~~~----l~~---~ql~~lR~~lr~-s~~~vgKNtL--mk~AL~~~~e~e~-~~~l~~L 92 (243)
...+.+||..+.....+.+.--+= +.. ..+..|-..|+| .-+.|..... +.+.+.......+ ++|-
T Consensus 35 ~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~L~~~l~G~~alift~~dp~~v~k~l~~~~~~~~ak~G~--- 111 (330)
T PRK04019 35 ARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGEEDLEKLEDYLEGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGD--- 111 (330)
T ss_pred HHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCcccHHHHHhhccCCEEEEEECCCHHHHHHHHHHcCCcccCCCCC---
Confidence 345788888888764444432110 111 236777788885 4555664333 3344444322111 1111
Q ss_pred hhhccCceEEE---EecCCHHHHHHHHhhcCcccccccCC--CccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceE
Q psy15723 93 SSALKGQCGLL---FTNRSKDDVLMWFDVYEDEDFAKSGF--ISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVV 167 (243)
Q Consensus 93 ~~~L~G~~all---FTn~dp~~v~k~l~~~~~~~~Ak~G~--iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I 167 (243)
+.-...+| -|+.+|..+...|.+...+..++.|. +++.++++++|.+ ..|++ ...||+|||+....+++|
T Consensus 112 ---iA~~divip~G~t~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~~~G~~-v~~~~-a~lL~~LgI~p~~~~~~i 186 (330)
T PRK04019 112 ---IAPEDIVVPAGPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVAKAGEV-ISPEL-ANVLQKLGIKPIEVGLDL 186 (330)
T ss_pred ---CCCCeEEEcCCCCCCCCcccHHHHHHcCCCeEecCCEEEEecCeEEecCCCC-cCHHH-HHHHHHcCCCHHHhhhHH
Confidence 11111122 35679999999999999999999999 9999999999999 55544 888999999999999999
Q ss_pred EEccCeeEeecCcccCHHHHHHHHHcCcCceeeEEEEEEEEe
Q psy15723 168 TLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYN 209 (243)
Q Consensus 168 ~i~~d~~v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~ 209 (243)
..+...|..++++.+ +|.|..+...+..+|.
T Consensus 187 -----~a~~~~G~~~~~~~l------~i~~e~~~~~i~~A~~ 217 (330)
T PRK04019 187 -----KAAYEDGVIYTPEVL------AIDEEKYRSDIQEAAQ 217 (330)
T ss_pred -----HHHHhcCCccCHHHc------cCCHHHHHHHHHHHHH
Confidence 567788999999877 6666666655555554
No 15
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=82.03 E-value=1 Score=38.34 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.1
Q ss_pred EccCeeEeecCcccCHHHHHHHHHcCc
Q psy15723 169 LFKDHTVCKKGDVLTPEQARILKLLKK 195 (243)
Q Consensus 169 i~~d~~v~k~Ge~vs~~qA~lL~~lgi 195 (243)
|.++-+++++|++||+++..+|..||+
T Consensus 193 V~~Ge~IV~kGe~VT~e~~~~L~~l~~ 219 (222)
T PF07697_consen 193 VKKGEVIVRKGEIVTEEQYEKLESLGL 219 (222)
T ss_pred ccCCCEEecCCcEeCHHHHHHHHHcCC
Confidence 344446899999999999999999996
No 16
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=73.67 E-value=12 Score=31.26 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=37.5
Q ss_pred CceeeecCceEEEc-cCeeEe-------ecCc---ccCHHHHHHHHHcCcCceeeEEEEEEEEeC
Q psy15723 157 GLQTNLNKGVVTLF-KDHTVC-------KKGD---VLTPEQARILKLLKKKMAKFKVLLYLWYNK 210 (243)
Q Consensus 157 giptki~kG~I~i~-~d~~v~-------k~Ge---~vs~~qA~lL~~lgikp~~~~l~l~~~~~~ 210 (243)
-||-++.+ .|||. .|+|++ .+|+ +.+++|++-|+..|.=|..|.+.=.-.++.
T Consensus 60 ~I~GKmRK-~IWI~~GD~VlVel~~yd~~KgdIi~Ry~~devr~Lk~~g~~P~~~~~~~~~~~~~ 123 (155)
T PTZ00329 60 HIRGKMRK-RVWINIGDIILVSLRDFQDSKADVILKYTPDEARALKQHGELPETAKINETDIFDD 123 (155)
T ss_pred Eeecccee-eEEecCCCEEEEeccCCCCCEEEEEEEcCHHHHHHHHHcCCCCcceeeccccccCc
Confidence 35566665 46654 455555 3344 468999999999999999999887666653
No 17
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=64.68 E-value=18 Score=27.41 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=36.5
Q ss_pred eeccccccCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhh
Q psy15723 10 VTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60 (243)
Q Consensus 10 v~ltk~~Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~l 60 (243)
|.|+. ..+.+.+++++|.+++.++..++|++- |++...++++.+..
T Consensus 4 IDls~----~~~~~~~~~~~l~~A~~~~GFf~l~nh-Gi~~~l~~~~~~~~ 49 (116)
T PF14226_consen 4 IDLSP----DPADREEVAEQLRDACEEWGFFYLVNH-GIPQELIDRVFAAA 49 (116)
T ss_dssp EEHGG----CHHHHHHHHHHHHHHHHHTSEEEEESS-SSSHHHHHHHHHHH
T ss_pred EECCC----CCccHHHHHHHHHHHHHhCCEEEEecc-cccchhhHHHHHHH
Confidence 45555 567889999999999999999888775 89987777776653
No 18
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=58.39 E-value=16 Score=30.47 Aligned_cols=25 Identities=16% Similarity=0.461 Sum_probs=23.2
Q ss_pred hCCeEEEEEeCC-CCcHHHHHHHHhh
Q psy15723 36 KYNNIFVFSVQN-MRNSKLKDVRNDW 60 (243)
Q Consensus 36 ~y~~v~v~~~~~-l~~~ql~~lR~~l 60 (243)
.-+.+||+||+| +++++...||.+.
T Consensus 96 ~~~r~~VldF~Gdi~A~~v~~LReei 121 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEVESLREEI 121 (155)
T ss_pred CCCeEEEEecCCCccHHHHHHHHHHH
Confidence 479999999999 9999999999986
No 19
>PLN00208 translation initiation factor (eIF); Provisional
Probab=51.31 E-value=21 Score=29.52 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=33.3
Q ss_pred CceeeecCceEEEc-cCeeEe-------ecCc---ccCHHHHHHHHHcCcCceeeEEE
Q psy15723 157 GLQTNLNKGVVTLF-KDHTVC-------KKGD---VLTPEQARILKLLKKKMAKFKVL 203 (243)
Q Consensus 157 giptki~kG~I~i~-~d~~v~-------k~Ge---~vs~~qA~lL~~lgikp~~~~l~ 203 (243)
-||.++.+ .|||. .|+|++ .+|+ +.+++|++-|+..|.=|..|.+.
T Consensus 60 ~IpGKmRK-rIWI~~GD~VlVel~~~d~~KgdIv~ry~~dqvr~Lkk~G~~P~~f~~~ 116 (145)
T PLN00208 60 HIRGKMRK-KVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLN 116 (145)
T ss_pred EEecccee-eEEecCCCEEEEEccCCCCCEEEEEEEcCHHHHHHHHHcCCCCcceeec
Confidence 46666666 56665 566666 3444 35899999999999999888764
No 20
>PF08800 VirE_N: VirE N-terminal domain; InterPro: IPR014907 This domain is associated with the N terminus of Virulence E proteins. The function of the domain is unknown.
Probab=50.77 E-value=18 Score=29.21 Aligned_cols=31 Identities=10% Similarity=0.334 Sum_probs=27.8
Q ss_pred HHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC
Q psy15723 31 VKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK 61 (243)
Q Consensus 31 ~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr 61 (243)
...+..|+.++++|++++...++.++|+.+.
T Consensus 24 ~~~l~~~sglv~lDiD~l~~ee~~~~r~~l~ 54 (136)
T PF08800_consen 24 ADNLKAYSGLVVLDIDHLDPEEAEELRQLLF 54 (136)
T ss_pred hhhhhhCCCcEEEEeCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999999999987
No 21
>KOG3414|consensus
Probab=46.19 E-value=51 Score=26.95 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHh-hCCceEEEEehHHHHHHhhccchhhhhhchhhhhhhccCceE
Q psy15723 23 KQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRND-WKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCG 101 (243)
Q Consensus 23 K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~-lr~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~G~~a 101 (243)
=.++++++.+.++++-.||++|.+.++ .+.+.=.. .+.+.|++..|+=|++-++.. .++-
T Consensus 41 mD~~L~~i~~~vsnfa~IylvdideV~--~~~~~~~l~~p~tvmfFfn~kHmkiD~gtg-----------------dn~K 101 (142)
T KOG3414|consen 41 MDELLSSIAEDVSNFAVIYLVDIDEVP--DFVKMYELYDPPTVMFFFNNKHMKIDLGTG-----------------DNNK 101 (142)
T ss_pred HHHHHHHHHHHHhhceEEEEEecchhh--hhhhhhcccCCceEEEEEcCceEEEeeCCC-----------------CCce
Confidence 356889999999999999999988433 22222211 124789999999998887654 2345
Q ss_pred EEEecCCHHHHHHHHhh
Q psy15723 102 LLFTNRSKDDVLMWFDV 118 (243)
Q Consensus 102 llFTn~dp~~v~k~l~~ 118 (243)
+.|.-++..+...+++.
T Consensus 102 in~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 102 INFAFEDKQEFIDIIET 118 (142)
T ss_pred EEEEeccHHHHHHHHHH
Confidence 66666777888777753
No 22
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=45.16 E-value=94 Score=24.51 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=48.6
Q ss_pred cHHHHHHHHhhC---CceEEEEehHHHHHHhhccchhhhhhchhhhhhhccCceEEEEecCCHHHHHHHHhhcCcc
Q psy15723 50 NSKLKDVRNDWK---DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDE 122 (243)
Q Consensus 50 ~~ql~~lR~~lr---~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~G~~allFTn~dp~~v~k~l~~~~~~ 122 (243)
.+..+++.+.|| ++-+.+.|..--.-+.= .-+...++.++|+--++|-+..-.|..|++++.+..
T Consensus 6 i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~L--------k~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~ 73 (112)
T cd03067 6 ISDHKDFKKLLRTRNNVLVLYSKSAKSAEALL--------KLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVD 73 (112)
T ss_pred ccchHHHHHHHhhcCcEEEEEecchhhHHHHH--------HHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccC
Confidence 356788888888 47777777653322211 136777889999999999999889999999998875
No 23
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=38.91 E-value=26 Score=35.85 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.4
Q ss_pred CeeEeecCcccCHHHHHHHHHcCcCcee
Q psy15723 172 DHTVCKKGDVLTPEQARILKLLKKKMAK 199 (243)
Q Consensus 172 d~~v~k~Ge~vs~~qA~lL~~lgikp~~ 199 (243)
+.+++++|+.|+.++..+|++||+---+
T Consensus 244 gqiIv~~ge~It~~~~~~L~~lgl~~~s 271 (700)
T COG1480 244 GQIIVKEGEIITDEDYVILDLLGLLSLS 271 (700)
T ss_pred CceEeecCceecHHHHHHHHHhhHHhcc
Confidence 6679999999999999999999876543
No 24
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=37.80 E-value=12 Score=28.44 Aligned_cols=15 Identities=47% Similarity=0.585 Sum_probs=11.5
Q ss_pred CCCCcccceeecccc
Q psy15723 1 MPKSKRDKKVTLSKT 15 (243)
Q Consensus 1 mp~skr~~~v~ltk~ 15 (243)
||+||..|+..-|-.
T Consensus 1 MPkSk~rKk~~~~~~ 15 (87)
T PF06781_consen 1 MPKSKVRKKAAYTPP 15 (87)
T ss_pred CCCccccccccCCCC
Confidence 999999887766533
No 25
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=37.23 E-value=41 Score=30.39 Aligned_cols=54 Identities=22% Similarity=0.127 Sum_probs=46.6
Q ss_pred cCHHHHHHHHHcCcCceeeEEEEEEEEeCC------CceEEEccCCcCCccccccccccC
Q psy15723 182 LTPEQARILKLLKKKMAKFKVLLYLWYNKK------EGTFENLLDREKTPMDIYDMEDDE 235 (243)
Q Consensus 182 vs~~qA~lL~~lgikp~~~~l~l~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~ 235 (243)
.+++.+.||+.-|++-.-.+++.--=+|.| .|+|+.+++--|+.+|.+.-||=-
T Consensus 18 ~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl 77 (255)
T cd03113 18 TAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFL 77 (255)
T ss_pred HHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhc
Confidence 467899999999999999888887777766 499999999999999999988843
No 26
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=35.61 E-value=58 Score=24.18 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=23.7
Q ss_pred cCceeeecCceEEEc-cCeeEeecCc----------ccCHHHHHHHHHcCc
Q psy15723 156 LGLQTNLNKGVVTLF-KDHTVCKKGD----------VLTPEQARILKLLKK 195 (243)
Q Consensus 156 Lgiptki~kG~I~i~-~d~~v~k~Ge----------~vs~~qA~lL~~lgi 195 (243)
.-||.++.+ .|+|. .|++++..-+ .++++|++-|+.-|.
T Consensus 32 a~ipgK~Rk-~iwI~~GD~VlVe~~~~~~~kg~Iv~r~~~~~vk~L~k~g~ 81 (83)
T smart00652 32 ARIPGKMRK-KVWIRRGDIVLVDPWDFQDVKADIIYKYTKDEVRWLKKEGE 81 (83)
T ss_pred EEEchhhcc-cEEEcCCCEEEEEecCCCCCEEEEEEEeCHHHHHHHHHcCC
Confidence 346666666 66664 6777776332 345677777766553
No 27
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=35.29 E-value=3.5e+02 Score=26.23 Aligned_cols=92 Identities=12% Similarity=0.186 Sum_probs=62.0
Q ss_pred HHhhCCeEEEEEeCCCC---cHHHHHHHHhhC---Cce-EEEE----ehHHHHHHhhccchhhhhhchhhhhhhccCceE
Q psy15723 33 AVEKYNNIFVFSVQNMR---NSKLKDVRNDWK---DSR-FFFG----KNKVMAYALGKSQEDEIEKNIHVVSSALKGQCG 101 (243)
Q Consensus 33 ~l~~y~~v~v~~~~~l~---~~ql~~lR~~lr---~s~-~~vg----KNtLmk~AL~~~~e~e~~~~l~~L~~~L~G~~a 101 (243)
.+..| .+++||--|.+ ..++.+|+.-+. +.. ++|. |...|+-++.+-. .-+-.+
T Consensus 278 ~l~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~--------------~~~i~~ 342 (407)
T COG1419 278 ALRDC-DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS--------------LFPIDG 342 (407)
T ss_pred HhhcC-CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc--------------cCCcce
Confidence 34444 78889998864 456677777776 222 3332 6666666665542 346689
Q ss_pred EEEecCC----HHHHHHHHhhcCc-ccccccCCCccceEEEcC
Q psy15723 102 LLFTNRS----KDDVLMWFDVYED-EDFAKSGFISTEDVELKE 139 (243)
Q Consensus 102 llFTn~d----p~~v~k~l~~~~~-~~~Ak~G~iA~~dvvI~~ 139 (243)
+|||..| ...+..++.+... -.|.--|+--|+||+++.
T Consensus 343 ~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~ 385 (407)
T COG1419 343 LIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVAN 385 (407)
T ss_pred eEEEcccccCchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcC
Confidence 9999865 5566666666554 468999999999999864
No 28
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=34.27 E-value=14 Score=27.95 Aligned_cols=13 Identities=54% Similarity=0.664 Sum_probs=10.1
Q ss_pred CCCCcccceeecc
Q psy15723 1 MPKSKRDKKVTLS 13 (243)
Q Consensus 1 mp~skr~~~v~lt 13 (243)
||+||+.|+-.-|
T Consensus 1 MPkSK~RKk~~~t 13 (87)
T PRK00159 1 MPKSKVRKKNDFT 13 (87)
T ss_pred CCCccccCCCCCC
Confidence 9999998874444
No 29
>COG5133 Uncharacterized conserved protein [Function unknown]
Probab=34.19 E-value=86 Score=26.16 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=55.6
Q ss_pred CCHHHHHHHHhhcCccc----ccccCCCccceEEEcCCCC------------CCCCCCChhHhhhcCceeeecCce---E
Q psy15723 107 RSKDDVLMWFDVYEDED----FAKSGFISTEDVELKEGPL------------PEFPHSIEPQLRQLGLQTNLNKGV---V 167 (243)
Q Consensus 107 ~dp~~v~k~l~~~~~~~----~Ak~G~iA~~dvvI~~G~t------------~~~p~~~~~~~~kLgiptki~kG~---I 167 (243)
-|+.+++.++.+...++ -+.-|.+.-+||.||.|.- +..||--+..+--|+|-+.+.+-. .
T Consensus 54 id~qeiydLia~I~DPEHPltL~QLsVV~lEdi~v~D~~~~n~i~~v~v~itPTIpHCSmatlIGLcIrvrleR~lpprF 133 (181)
T COG5133 54 IDQQEIYDLIADIRDPEHPLTLEQLSVVSLEDISVPDGIAPNVIRCVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRF 133 (181)
T ss_pred cCHHHHHHHHHhcCCCCCCccHhhcceeeeccccccCCCCCCeeEEEEEEeccCCCchhHHHHhhhheeeeehhcCCCce
Confidence 36788888888777654 3455667777777776633 346776677788899999998643 2
Q ss_pred EEccCeeEeecCcccCHHHH
Q psy15723 168 TLFKDHTVCKKGDVLTPEQA 187 (243)
Q Consensus 168 ~i~~d~~v~k~Ge~vs~~qA 187 (243)
++. +.+++|..+|..|.
T Consensus 134 ~v~---v~ikkGtH~se~qv 150 (181)
T COG5133 134 HVQ---VHIKKGTHISERQV 150 (181)
T ss_pred eEE---EEEecCCcccHHHH
Confidence 332 67899999998774
No 30
>PLN02276 gibberellin 20-oxidase
Probab=33.82 E-value=99 Score=28.95 Aligned_cols=52 Identities=8% Similarity=0.017 Sum_probs=39.0
Q ss_pred eeeccccccCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC
Q psy15723 9 KVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK 61 (243)
Q Consensus 9 ~v~ltk~~Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr 61 (243)
+|.|+.-.....+.+.+++++|.+++.++.+++|++ +|++...+.+++...+
T Consensus 43 vIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~n-HGI~~~l~~~~~~~~~ 94 (361)
T PLN02276 43 LIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVN-HGVDAALIRAAHEYMD 94 (361)
T ss_pred eEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEc-CCCCHHHHHHHHHHHH
Confidence 355554322234557789999999999999999997 8999988888886543
No 31
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=33.74 E-value=61 Score=23.97 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=26.5
Q ss_pred CCCCcccceeeccccccCchHHHHHHHHHHHHHHhh
Q psy15723 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEK 36 (243)
Q Consensus 1 mp~skr~~~v~ltk~~Kk~~e~K~~~v~~l~e~l~~ 36 (243)
++||.+--.++.|..+=++.+.|++++..|.+.|..
T Consensus 23 ~~Rs~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~ 58 (82)
T PF14552_consen 23 IDRSDDFVIIQITSGAGRSTEQKKALYRALAERLAE 58 (82)
T ss_dssp -TS-TT-EEEEEEECS---HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 467888888888888888999999999999999875
No 32
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=30.52 E-value=3.2e+02 Score=24.11 Aligned_cols=93 Identities=11% Similarity=0.034 Sum_probs=49.9
Q ss_pred HHHHHHHHhhCC-eEEEEEeCC--CCcHHHHHHHHhh---CCceEEEEehHHHHHHhhccchhhhhhc--hhhhhhhcc-
Q psy15723 27 RDELVKAVEKYN-NIFVFSVQN--MRNSKLKDVRNDW---KDSRFFFGKNKVMAYALGKSQEDEIEKN--IHVVSSALK- 97 (243)
Q Consensus 27 v~~l~e~l~~y~-~v~v~~~~~--l~~~ql~~lR~~l---r~s~~~vgKNtLmk~AL~~~~e~e~~~~--l~~L~~~L~- 97 (243)
|++|++-|+.-+ ..++||++| +.+.... +.-+ ....+..-+|.-+.....+....+..+. ...+.+++.
T Consensus 51 ~~~~~~~~~~~~p~aViFDlDgTLlDSs~~~--~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~ 128 (237)
T TIGR01672 51 VAQIENSLEGRPPIAVSFDIDDTVLFSSPGF--WRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQR 128 (237)
T ss_pred HHHHHHhcCCCCCeEEEEeCCCccccCcHHH--hCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHH
Confidence 788998888664 599999999 4555544 1111 1233445444444444433332222233 566666554
Q ss_pred -CceEEEEecCC---HH-HHHHHHhhcCc
Q psy15723 98 -GQCGLLFTNRS---KD-DVLMWFDVYED 121 (243)
Q Consensus 98 -G~~allFTn~d---p~-~v~k~l~~~~~ 121 (243)
|-...+.|+.. +. -+..+++.+.-
T Consensus 129 ~G~~i~iVTnr~~~k~~~~a~~ll~~lGi 157 (237)
T TIGR01672 129 RGDAIFFVTGRTPGKTDTVSKTLAKNFHI 157 (237)
T ss_pred CCCEEEEEeCCCCCcCHHHHHHHHHHhCC
Confidence 44666777762 33 33444444544
No 33
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=30.36 E-value=57 Score=32.33 Aligned_cols=53 Identities=23% Similarity=0.137 Sum_probs=47.2
Q ss_pred cCHHHHHHHHHcCcCceeeEEEEEEEEeCC------CceEEEccCCcCCcccccccccc
Q psy15723 182 LTPEQARILKLLKKKMAKFKVLLYLWYNKK------EGTFENLLDREKTPMDIYDMEDD 234 (243)
Q Consensus 182 vs~~qA~lL~~lgikp~~~~l~l~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~ 234 (243)
.+++.++||+..|.+-.-.+++.--=+|.| .|+|+..++=-|+.+|.+.-||=
T Consensus 19 ~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF 77 (533)
T COG0504 19 TAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERF 77 (533)
T ss_pred HHHHHHHHHHHCCceEEEEecccceecCCCCCCcccCceEEECCCCccccccccchhhh
Confidence 357899999999999999999988888877 69999999999999999998873
No 34
>smart00455 RBD Raf-like Ras-binding domain.
Probab=28.24 E-value=62 Score=23.11 Aligned_cols=33 Identities=18% Similarity=0.056 Sum_probs=30.3
Q ss_pred eeEeecCcccCHHHHHHHHHcCcCceeeEEEEE
Q psy15723 173 HTVCKKGDVLTPEQARILKLLKKKMAKFKVLLY 205 (243)
Q Consensus 173 ~~v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~ 205 (243)
.+.+++|..|-.-.+.+|++-|+.|..+.+.+.
T Consensus 13 ~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~ 45 (70)
T smart00455 13 VVKVRPGKTVRDALAKALKKRGLNPECCVVRLR 45 (70)
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEc
Confidence 378999999999999999999999999988875
No 35
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=27.77 E-value=93 Score=22.83 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=22.9
Q ss_pred CceeeecCceEEEc-cCeeEeec---Cc--------ccCHHHHHHHHHcC
Q psy15723 157 GLQTNLNKGVVTLF-KDHTVCKK---GD--------VLTPEQARILKLLK 194 (243)
Q Consensus 157 giptki~kG~I~i~-~d~~v~k~---Ge--------~vs~~qA~lL~~lg 194 (243)
-||.++.+- |+|. .|++++.. |+ ..+++|++-|+..|
T Consensus 28 ~i~gK~Rk~-iwI~~GD~VlV~~~~~~~~~kg~Iv~r~~~~~vk~L~k~g 76 (78)
T cd04456 28 SIPGKLRKN-IWIKRGDFLIVDPIEEGEDVKADIIFVYCKDHVRSLKKEG 76 (78)
T ss_pred EEchhhccC-EEEcCCCEEEEEecccCCCceEEEEEEeCHHHHHHHHHcC
Confidence 356666655 6664 66777755 21 35677777777665
No 36
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=27.65 E-value=2e+02 Score=22.55 Aligned_cols=37 Identities=8% Similarity=0.292 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHh
Q psy15723 22 RKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRND 59 (243)
Q Consensus 22 ~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~ 59 (243)
.+.+++++|.+++.++..++|++ +|++...+.++...
T Consensus 52 ~~~~~~~~L~~A~~~~GFf~l~n-hGi~~elid~~~~~ 88 (120)
T PLN03176 52 KRAEICNKIVEACEEWGVFQIVD-HGVDAKLVSEMTTL 88 (120)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEC-CCCCHHHHHHHHHH
Confidence 35667888888888887777665 67887776666653
No 37
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=27.13 E-value=94 Score=22.17 Aligned_cols=34 Identities=12% Similarity=-0.049 Sum_probs=27.6
Q ss_pred eeEeecCcccCHHHHHHHHHcCcCceeeEEEEEE
Q psy15723 173 HTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYL 206 (243)
Q Consensus 173 ~~v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~ 206 (243)
.+.+++|+.|-.-.+.+|++-|+.|..+.+.+.+
T Consensus 14 ~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 14 VVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 3789999999999999999999999988887665
No 38
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=27.09 E-value=62 Score=32.26 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=46.6
Q ss_pred cCHHHHHHHHHcCcCceeeEEEEEEEEeCC------CceEEEccCCcCCcccccccccc
Q psy15723 182 LTPEQARILKLLKKKMAKFKVLLYLWYNKK------EGTFENLLDREKTPMDIYDMEDD 234 (243)
Q Consensus 182 vs~~qA~lL~~lgikp~~~~l~l~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~ 234 (243)
++++.+.||+..|++-.-.+++.--=+|.| .|+|+.+++=-|+.+|++.-||=
T Consensus 19 ~~as~g~ll~~~g~~v~~~K~DpYlN~d~GtmsP~~HGEvfVt~DG~E~DlDlG~YERf 77 (525)
T TIGR00337 19 TAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERF 77 (525)
T ss_pred HHHHHHHHHHhCCCceEEEeecccccCCCCCCCcccCceEEEcCCCccccccccchhhh
Confidence 468999999999999999998887667776 59999999999999999998884
No 39
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=27.02 E-value=72 Score=23.06 Aligned_cols=34 Identities=15% Similarity=-0.026 Sum_probs=31.0
Q ss_pred eeEeecCcccCHHHHHHHHHcCcCceeeEEEEEE
Q psy15723 173 HTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYL 206 (243)
Q Consensus 173 ~~v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~ 206 (243)
.+-+++|..+-.-.++++++-|+.|..+.+.+.+
T Consensus 13 ~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 13 VVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 4789999999999999999999999999888773
No 40
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=27.00 E-value=79 Score=24.44 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=25.9
Q ss_pred cCceeeecCceEEEc-cCeeEee-------cCcc---cCHHHHHHHHHcCc
Q psy15723 156 LGLQTNLNKGVVTLF-KDHTVCK-------KGDV---LTPEQARILKLLKK 195 (243)
Q Consensus 156 Lgiptki~kG~I~i~-~d~~v~k-------~Ge~---vs~~qA~lL~~lgi 195 (243)
.-||-++.+ .|||. .|+|++. +|+. .+++|++-|+..|.
T Consensus 48 a~i~GK~Rk-~IwI~~GD~VlVe~~~~~~~kg~Iv~r~~~~qv~~L~~~g~ 97 (100)
T PRK04012 48 GRIPGKMKK-RMWIREGDVVIVAPWDFQDEKADIIWRYTKPQVDWLRRKGY 97 (100)
T ss_pred EEEchhhcc-cEEecCCCEEEEEecccCCCEEEEEEEcCHHHHHHHHHcCC
Confidence 346677777 67775 6777775 4543 46788888877665
No 41
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=26.76 E-value=2.5e+02 Score=23.57 Aligned_cols=49 Identities=12% Similarity=0.295 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHhhCCeEEEEEeCC--CCcHHHHHHHHhhC--C--ceEEEE
Q psy15723 20 LERKQNLRDELVKAVEKYNNIFVFSVQN--MRNSKLKDVRNDWK--D--SRFFFG 68 (243)
Q Consensus 20 ~e~K~~~v~~l~e~l~~y~~v~v~~~~~--l~~~ql~~lR~~lr--~--s~~~vg 68 (243)
...|++.=+.|...+...++++..|.+| +++.++.+.=..|+ | ..|.+|
T Consensus 50 ~~~~~~E~~~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G~~i~f~IG 104 (155)
T COG1576 50 ELIKKKEGEAILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDGRDISFLIG 104 (155)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcCCeEEEEEe
Confidence 3457777788899999999999999999 79999988888887 3 345555
No 42
>PRK05667 dnaG DNA primase; Validated
Probab=26.73 E-value=57 Score=32.78 Aligned_cols=55 Identities=25% Similarity=0.421 Sum_probs=38.9
Q ss_pred ccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCeeEeecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeC
Q psy15723 131 STEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNK 210 (243)
Q Consensus 131 A~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~ 210 (243)
....|+|-+|++.-. .+.+.|++ .+|+--|..+|.+|+.+|+.+.. +|..+||+
T Consensus 252 ~~~~viivEG~~Dvi------sl~q~Gi~-------------naVA~lGtalt~~~~~~L~r~~~-------~vil~~D~ 305 (580)
T PRK05667 252 KKKQVIVVEGYMDVI------ALHQAGIT-------------NAVASLGTALTEEHLKLLRRLTD-------EVILCFDG 305 (580)
T ss_pred cCCeEEEEeeHHHHH------HHHHcCCC-------------cEEEeCCCCCCHHHHHHHHhcCC-------eEEEEeCC
Confidence 345677777866321 25667764 26777899999999999987753 67788885
Q ss_pred C
Q psy15723 211 K 211 (243)
Q Consensus 211 ~ 211 (243)
.
T Consensus 306 D 306 (580)
T PRK05667 306 D 306 (580)
T ss_pred C
Confidence 4
No 43
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=26.03 E-value=1.6e+02 Score=27.48 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=37.3
Q ss_pred eeccccccCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHh
Q psy15723 10 VTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRND 59 (243)
Q Consensus 10 v~ltk~~Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~ 59 (243)
|.|+.-.....+.+.+++++|.+++.++.+++|++ +|++...+.++...
T Consensus 51 IDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~n-HGI~~~l~~~~~~~ 99 (360)
T PLN03178 51 VDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVG-HGIPADLLDRVRKA 99 (360)
T ss_pred EEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEc-CCCCHHHHHHHHHH
Confidence 45554433344557789999999999999999997 89998877777643
No 44
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=25.00 E-value=1.9e+02 Score=27.03 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=36.4
Q ss_pred eeccccccCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHh
Q psy15723 10 VTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRND 59 (243)
Q Consensus 10 v~ltk~~Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~ 59 (243)
|.|+.-.....+.+.+++++|.++++++..++|++ +|++...+.+++..
T Consensus 55 IDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~n-HGI~~~li~~~~~~ 103 (362)
T PLN02393 55 IDLSSLFSDDARLRDATLRAISEACREWGFFQVVN-HGVRPELMDRAREA 103 (362)
T ss_pred EECccccCCChHHHHHHHHHHHHHHHHCcEEEEEe-CCCCHHHHHHHHHH
Confidence 44544332234456789999999999999999987 79998888887653
No 45
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=24.11 E-value=5e+02 Score=22.83 Aligned_cols=126 Identities=11% Similarity=0.181 Sum_probs=67.1
Q ss_pred HHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-CceEEEEehHHHHHHhhccc------------------------hhh
Q psy15723 30 LVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGKSQ------------------------EDE 84 (243)
Q Consensus 30 l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-~s~~~vgKNtLmk~AL~~~~------------------------e~e 84 (243)
++.++...--+-++++=.++...++.-|+.|+ ++.+.+.=| +++-.+.+.. .+-
T Consensus 36 ~~R~IhAtgD~e~~~~l~fs~~~i~ag~~AL~~g~~Iv~Dv~-MV~aGI~~~~l~~~~~v~c~i~d~~~~e~a~~~g~Tr 114 (210)
T COG2082 36 IKRVIHATGDFEYADLLRFSPGAIEAGREALKAGCPIVVDVN-MVAAGITRRRLPALNPVICYVDDPRVAELAKEEGITR 114 (210)
T ss_pred HHHHHHhccCHhhHhhheeCCcHHHHHHHHHHcCCcEEEccH-HHHHhcccccccccCcEEEEecCcchHHHHHhhCchH
Confidence 34444444445555555566677888888888 556655533 3333433321 001
Q ss_pred hhhchhhhhhhccCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhH--hhhcCceeee
Q psy15723 85 IEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQ--LRQLGLQTNL 162 (243)
Q Consensus 85 ~~~~l~~L~~~L~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~--~~kLgiptki 162 (243)
...++....+.+.|.+.+++.|- |.++.++++=. +.|.+-|. ++| +-|++ |-|-.++. |++++||.-.
T Consensus 115 saa~~~~~~~~~~~~~ivvIGNA-PTAL~~l~eli------e~~~~~pa-lvI-g~PVG-Fv~AaesKe~L~~~~iP~it 184 (210)
T COG2082 115 SAAGMRLAAERGEGGAIVVIGNA-PTALFELLELI------EEGGIKPA-LVI-GVPVG-FVGAAESKEALRESPIPYIT 184 (210)
T ss_pred HHHHHHHHHHhcCCceEEEEeCC-HHHHHHHHHHH------HccCCCCc-EEE-EcCCc-ccchHHHHHHHHhCCCCeEE
Confidence 12235555667777788899875 44444444211 11211122 333 33443 33344543 9999999988
Q ss_pred cCce
Q psy15723 163 NKGV 166 (243)
Q Consensus 163 ~kG~ 166 (243)
..|.
T Consensus 185 v~G~ 188 (210)
T COG2082 185 VRGR 188 (210)
T ss_pred EecC
Confidence 8774
No 46
>PF03453 MoeA_N: MoeA N-terminal region (domain I and II); InterPro: IPR005110 This entry represents the N-terminal and linker domains of the MoeA protein. Proteins in this family contain two structural domains, one of which contains the conserved DGXA motif. These two domains are found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this region is uncertain. The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) [].; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1UZ5_A 1T3E_B 2FTS_A 2FU3_A 1XI8_A 1WU2_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A ....
Probab=23.31 E-value=75 Score=26.19 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=18.3
Q ss_pred cCeeEeecCcccCHHHHHHHHHcC
Q psy15723 171 KDHTVCKKGDVLTPEQARILKLLK 194 (243)
Q Consensus 171 ~d~~v~k~Ge~vs~~qA~lL~~lg 194 (243)
.+-+|+++|+.|+|..-.+|..+|
T Consensus 139 ~G~~ll~~G~~l~p~~i~lLas~G 162 (162)
T PF03453_consen 139 KGEVLLKKGTRLTPAHIGLLASAG 162 (162)
T ss_dssp TTSEEE-TTBB--HHHHHHHHHTT
T ss_pred CCCEEECCCCCCCHHHHHHHHhCC
Confidence 556899999999999999998876
No 47
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=23.01 E-value=1.2e+02 Score=23.89 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=32.9
Q ss_pred CCCcccceeeccccccCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC
Q psy15723 2 PKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK 61 (243)
Q Consensus 2 p~skr~~~v~ltk~~Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr 61 (243)
|.-||.+.+.||. ++++...++.....+..... +.+++..+.+.+.+.++
T Consensus 82 ~~DrR~~~l~LT~---~G~~~~~~~~~~~~~~~~~~-------~~~l~~ee~~~l~~~l~ 131 (144)
T PRK03573 82 ASDRRAKRIKLTE---KAEPLISEVEAVINKTRAEI-------LHGISAEEIEQLITLIA 131 (144)
T ss_pred CCCcCeeeeEECh---HHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHHH
Confidence 6779999999997 34444444444343333332 46889899988887764
No 48
>PRK01631 hypothetical protein; Provisional
Probab=22.83 E-value=1.1e+02 Score=22.66 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=40.1
Q ss_pred cccceeeccccccC-chHHHHHHHHHHHHHHh-hCCeEEEEEeCC--CCcHHHHHHHHhhC
Q psy15723 5 KRDKKVTLSKTVKK-GLERKQNLRDELVKAVE-KYNNIFVFSVQN--MRNSKLKDVRNDWK 61 (243)
Q Consensus 5 kr~~~v~ltk~~Kk-~~e~K~~~v~~l~e~l~-~y~~v~v~~~~~--l~~~ql~~lR~~lr 61 (243)
|.+|...||...++ ..+-..++++.++..|. .-..+-|+|-.| ++...++++++.++
T Consensus 13 kK~K~~gLT~eE~~Eq~~LR~eYl~~fR~~~~~~L~~i~ivD~~G~dvTP~Klk~~q~~~~ 73 (76)
T PRK01631 13 KKEKATGLTVDEKQEQQMLRQNYTQTFRGSLDSILLNTKIVDQNGLNVTPAALQDAQIRLK 73 (76)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeECCCCCcCCHHHHHHHHHHHh
Confidence 44555667766555 34456778888888776 457888888877 78888888877543
No 49
>PLN02327 CTP synthase
Probab=22.69 E-value=80 Score=31.73 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=46.5
Q ss_pred cCHHHHHHHHHcCcCceeeEEEEEEEEeCC------CceEEEccCCcCCcccccccccc
Q psy15723 182 LTPEQARILKLLKKKMAKFKVLLYLWYNKK------EGTFENLLDREKTPMDIYDMEDD 234 (243)
Q Consensus 182 vs~~qA~lL~~lgikp~~~~l~l~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~ 234 (243)
++++...||+..|.+-.-.+++.--=+|.| .|+|+.+++=-|+.+|.+.-||=
T Consensus 19 ~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDLDlG~YERF 77 (557)
T PLN02327 19 TASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERF 77 (557)
T ss_pred HHHHHHHHHHHCCCceeeeecccccccCCCCCCCcccceEEEccCCccccccccchhhh
Confidence 468899999999999999998887667776 59999999999999999998884
No 50
>KOG2387|consensus
Probab=22.69 E-value=1.1e+02 Score=30.27 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=45.7
Q ss_pred cCHHHHHHHHHcCcCceeeEEEEEEEEeCC------CceEEEccCCcCCccccccccc
Q psy15723 182 LTPEQARILKLLKKKMAKFKVLLYLWYNKK------EGTFENLLDREKTPMDIYDMED 233 (243)
Q Consensus 182 vs~~qA~lL~~lgikp~~~~l~l~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~ 233 (243)
+.++.-.|||-.|.+-..++++.---+|.| .|+|+.|++--|..+|.+.-||
T Consensus 19 ~aSSiG~lLKs~Gl~VTsIKIDPYlN~DAGTmSPyEHGEVfVLDDGgEvDLDLGNYER 76 (585)
T KOG2387|consen 19 IASSIGVLLKSCGLRVTSIKIDPYLNIDAGTMSPYEHGEVFVLDDGGEVDLDLGNYER 76 (585)
T ss_pred eehhHHHHHHhcCceeEEEEeccceeccCcccCccccceEEEecCCceecccccchhh
Confidence 456778899999999999999987777766 6899999999999999998887
No 51
>PRK05380 pyrG CTP synthetase; Validated
Probab=22.56 E-value=94 Score=31.09 Aligned_cols=54 Identities=20% Similarity=0.110 Sum_probs=46.8
Q ss_pred cCHHHHHHHHHcCcCceeeEEEEEEEEeCC------CceEEEccCCcCCccccccccccC
Q psy15723 182 LTPEQARILKLLKKKMAKFKVLLYLWYNKK------EGTFENLLDREKTPMDIYDMEDDE 235 (243)
Q Consensus 182 vs~~qA~lL~~lgikp~~~~l~l~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~ 235 (243)
.+++.+.||+.-|++-.-.+++.--=.|.| .|+||.+++=-|+..|++.-||=-
T Consensus 20 ~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~EtDlDlG~YERf~ 79 (533)
T PRK05380 20 TAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFI 79 (533)
T ss_pred HHHHHHHHHHhCCCceEEEeeccccccCCCCCCCccceeEEEccCCCcccccccchhhhc
Confidence 368899999999999999998887777776 499999999999999999998843
No 52
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=22.43 E-value=2.6e+02 Score=23.20 Aligned_cols=39 Identities=10% Similarity=0.324 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhCCeEEEEEeCC--CCcHHHHHHHHhhC
Q psy15723 23 KQNLRDELVKAVEKYNNIFVFSVQN--MRNSKLKDVRNDWK 61 (243)
Q Consensus 23 K~~~v~~l~e~l~~y~~v~v~~~~~--l~~~ql~~lR~~lr 61 (243)
+.+.-+.|...+....++++.|-+| ++|.++.+.=..|.
T Consensus 53 ~~~E~~~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~ 93 (157)
T PRK00103 53 KAKEGERILAALPKGARVIALDERGKQLSSEEFAQELERWR 93 (157)
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHH
Confidence 4445555666666666677777776 66777766655554
No 53
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=22.11 E-value=4.7e+02 Score=21.92 Aligned_cols=128 Identities=12% Similarity=0.164 Sum_probs=59.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHH---hh----CCceEEEEehHHHHHHhhccchhhhhhchhhhhhhccCceEEEEec-CCH
Q psy15723 38 NNIFVFSVQNMRNSKLKDVRN---DW----KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTN-RSK 109 (243)
Q Consensus 38 ~~v~v~~~~~l~~~ql~~lR~---~l----r~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~G~~allFTn-~dp 109 (243)
+.||+- ..++.++..++. .| ++..+.+.=.|-- +.+...+.+...+...+.- +.|
T Consensus 22 ~~iWiH---a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~t--------------g~~~~~~~~~~~v~~~~~P~D~~ 84 (186)
T PF04413_consen 22 PLIWIH---AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPT--------------GREMARKLLPDRVDVQYLPLDFP 84 (186)
T ss_dssp T-EEEE----SSHHHHHHHHHHHHHHTT---TS-EEEEES-CC--------------HHHHHHGG-GGG-SEEE---SSH
T ss_pred CcEEEE---ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCc--------------hHHHHHHhCCCCeEEEEeCccCH
Confidence 445543 556666655543 33 3577777765521 2333333443444444443 558
Q ss_pred HHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEcc------------------
Q psy15723 110 DDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFK------------------ 171 (243)
Q Consensus 110 ~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~------------------ 171 (243)
..+.+.++.++.. -+++-++.+ -| .+....++.|||+-+.+|.+.=.+
T Consensus 85 ~~~~rfl~~~~P~-----------~~i~~EtEl--WP-nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f 150 (186)
T PF04413_consen 85 WAVRRFLDHWRPD-----------LLIWVETEL--WP-NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRF 150 (186)
T ss_dssp HHHHHHHHHH--S-----------EEEEES------H-HHHHH-----S-EEEEEE--------------HHHHHHGGG-
T ss_pred HHHHHHHHHhCCC-----------EEEEEcccc--CH-HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhC
Confidence 8888888766443 244444433 44 577888999999999999987432
Q ss_pred CeeEeecCcccCHHHHHHHHHcCcCceeeE
Q psy15723 172 DHTVCKKGDVLTPEQARILKLLKKKMAKFK 201 (243)
Q Consensus 172 d~~v~k~Ge~vs~~qA~lL~~lgikp~~~~ 201 (243)
|...+ .|.+.|+-|..||..+....
T Consensus 151 ~~i~a-----qs~~da~r~~~lG~~~~~v~ 175 (186)
T PF04413_consen 151 DRILA-----QSEADAERFRKLGAPPERVH 175 (186)
T ss_dssp SEEEE-----SSHHHHHHHHTTT-S--SEE
T ss_pred CEEEE-----CCHHHHHHHHHcCCCcceEE
Confidence 33333 47888889999999875433
No 54
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=22.09 E-value=5.6e+02 Score=22.70 Aligned_cols=84 Identities=10% Similarity=0.164 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC---CceEEEEehHHHHHHhhccchhhhhhchhhhhhhccCce
Q psy15723 24 QNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK---DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQC 100 (243)
Q Consensus 24 ~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr---~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~G~~ 100 (243)
.++.+-+.+++++|..|+++.+..--|...+..+..-. +-.+.|.=...+-.+.+-. .....+++.-
T Consensus 65 ~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~--------v~~a~~~~~~-- 134 (275)
T TIGR00762 65 GEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLL--------VLEAAKLAEE-- 134 (275)
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHH--------HHHHHHHHHc--
Confidence 34555567777789899999999877777777765543 3478888666666555543 2223333321
Q ss_pred EEEEecCCHHHHHHHHhhcCcc
Q psy15723 101 GLLFTNRSKDDVLMWFDVYEDE 122 (243)
Q Consensus 101 allFTn~dp~~v~k~l~~~~~~ 122 (243)
..++.++.+.++++...
T Consensus 135 -----G~s~~eI~~~l~~~~~~ 151 (275)
T TIGR00762 135 -----GKSLEEILAKLEELRER 151 (275)
T ss_pred -----CCCHHHHHHHHHHHHhh
Confidence 34678888888776554
No 55
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=21.17 E-value=20 Score=32.74 Aligned_cols=52 Identities=23% Similarity=0.191 Sum_probs=38.2
Q ss_pred cCHHHHHHHHHcCcCceeeEEEEEEEEeCC------CceEEEccCCcCCccccccccc
Q psy15723 182 LTPEQARILKLLKKKMAKFKVLLYLWYNKK------EGTFENLLDREKTPMDIYDMED 233 (243)
Q Consensus 182 vs~~qA~lL~~lgikp~~~~l~l~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~ 233 (243)
++++.+.||+.-|.+-.-.+++.--=+|.| .|+|+..++=-|+.+|++.-||
T Consensus 19 ~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~DG~EtDLDlG~YER 76 (276)
T PF06418_consen 19 TAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTDDGGETDLDLGHYER 76 (276)
T ss_dssp HHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-TTS-EEETHHHHHHH
T ss_pred HHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEecCccccccccchHHH
Confidence 468899999999999888888775445554 6999999999999999998887
No 56
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=21.14 E-value=2.4e+02 Score=25.88 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=40.5
Q ss_pred CCCCcccceeeccccccCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhh
Q psy15723 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60 (243)
Q Consensus 1 mp~skr~~~v~ltk~~Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~l 60 (243)
|.++.---+|.|+.-. . ..+.+++++|.+++.++.+++|++ +|++...++++....
T Consensus 1 ~~~~~~iPvIDls~~~--~-~~~~~~~~~l~~A~~~~GFF~v~n-HGI~~~l~~~~~~~~ 56 (321)
T PLN02299 1 MAKMESFPVIDMEKLN--G-EERAATMELIKDACENWGFFELVN-HGISHELMDEVEKMT 56 (321)
T ss_pred CCCCCCCCEEECcCCC--c-ccHHHHHHHHHHHHHhcCEEEEEC-CCCCHHHHHHHHHHH
Confidence 4445555567776432 1 234668999999999999998887 899998888877543
No 57
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=20.75 E-value=64 Score=22.60 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC
Q psy15723 19 GLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK 61 (243)
Q Consensus 19 ~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr 61 (243)
..+.|.++++++..+....+ -.-..+.+++|+..|+
T Consensus 32 n~~~K~~Li~~~~~l~~~~d-------~~~~~~~~k~l~~~Wk 67 (77)
T PF03993_consen 32 NLEKKEALIEEAEALAESED-------WKEAAEEIKELQQEWK 67 (77)
T ss_pred HHHHHHHHHHHHHHhccccc-------HHHHHHHHHHHHHHHH
Confidence 56789999999988877655 3456688999999998
No 58
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=20.64 E-value=1.7e+02 Score=21.58 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=13.7
Q ss_pred CceeeecCceEEEc-cCeeEeec
Q psy15723 157 GLQTNLNKGVVTLF-KDHTVCKK 178 (243)
Q Consensus 157 giptki~kG~I~i~-~d~~v~k~ 178 (243)
-||.++.+ .|+|. .||+++.+
T Consensus 28 ~iP~KfRk-~iWIkrGd~VlV~p 49 (78)
T cd05792 28 SMPTKFRK-NIWIKRGDFVLVEP 49 (78)
T ss_pred Eechhhcc-cEEEEeCCEEEEEe
Confidence 35666653 66665 67888866
No 59
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=20.46 E-value=1.6e+02 Score=27.84 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=26.6
Q ss_pred cCeeEeecCcccCHHHHHHHHHcCcCceee
Q psy15723 171 KDHTVCKKGDVLTPEQARILKLLKKKMAKF 200 (243)
Q Consensus 171 ~d~~v~k~Ge~vs~~qA~lL~~lgikp~~~ 200 (243)
..-+|+++|+.|+|....+|..+||.-.+.
T Consensus 136 ~G~~ll~~G~~l~p~~i~~Las~Gi~~v~V 165 (394)
T cd00887 136 AGDVLLPAGTRLTPADIGLLASLGIAEVPV 165 (394)
T ss_pred CCCEEECCCCCCCHHHHHHHHhCCCCEEEE
Confidence 455899999999999999999999987654
No 60
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.07 E-value=1.6e+02 Score=21.71 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=42.5
Q ss_pred cccceeeccccccCc-hHHHHHHHHHHHHHHh-hCCeEEEEEeC--CCCcHHHHHHHHhhC
Q psy15723 5 KRDKKVTLSKTVKKG-LERKQNLRDELVKAVE-KYNNIFVFSVQ--NMRNSKLKDVRNDWK 61 (243)
Q Consensus 5 kr~~~v~ltk~~Kk~-~e~K~~~v~~l~e~l~-~y~~v~v~~~~--~l~~~ql~~lR~~lr 61 (243)
|+.|...||--.++- ..-.+++++.++..+. .-..+=|+|-. .++...+.++|+..+
T Consensus 14 kk~K~~gLTeeEk~eQ~~LR~eYl~~fr~~vk~~l~~ikiiDp~GnDVTP~Klk~~q~~~~ 74 (77)
T COG4224 14 KKKKEEGLTEEEKKEQAKLRREYLESFRGQVKNQLENIKIIDPKGNDVTPEKLKQIQRKKG 74 (77)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeCCCCCCCChHHHHHHHHHhc
Confidence 455666677665553 3346778888888776 45788999988 589999999998865
Done!