Your job contains 1 sequence.
>psy15723
MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW
KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE
DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD
VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLDREKTPMDIYDMEDDENNSNE
ESD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15723
(243 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|E2RG17 - symbol:MRTO4 "Uncharacterized protein"... 644 4.2e-63 1
MGI|MGI:1917152 - symbol:Mrto4 "MRT4, mRNA turnover 4, ho... 642 6.9e-63 1
UNIPROTKB|A4FV84 - symbol:MRTO4 "mRNA turnover protein 4 ... 638 1.8e-62 1
UNIPROTKB|Q9UKD2 - symbol:MRTO4 "mRNA turnover protein 4 ... 632 7.9e-62 1
UNIPROTKB|F1SUQ2 - symbol:MRTO4 "Uncharacterized protein"... 631 1.0e-61 1
ZFIN|ZDB-GENE-050417-142 - symbol:mrto4 "mRNA turnover 4 ... 620 1.5e-60 1
UNIPROTKB|F1P353 - symbol:MRTO4 "Uncharacterized protein"... 617 3.1e-60 1
UNIPROTKB|E2QYG0 - symbol:E2QYG0 "Uncharacterized protein... 564 1.3e-54 1
FB|FBgn0033485 - symbol:RpLP0-like "Ribosomal protein LP0... 561 2.6e-54 1
UNIPROTKB|F1M970 - symbol:F1M970 "Uncharacterized protein... 554 1.5e-53 1
RGD|1311709 - symbol:Mrto4 "mRNA turnover 4 homolog (S. c... 513 3.2e-49 1
WB|WBGene00017347 - symbol:F10E7.5 species:6239 "Caenorha... 493 4.2e-47 1
TAIR|locus:2032970 - symbol:AT1G25260 "AT1G25260" species... 486 2.3e-46 1
UNIPROTKB|J9NSQ8 - symbol:MRTO4 "Uncharacterized protein"... 484 3.8e-46 1
DICTYBASE|DDB_G0276411 - symbol:mrt4 "mRNA turnover prote... 467 2.4e-44 1
POMBASE|SPBC11G11.03 - symbol:mrt4 "mRNA turnover and rib... 385 1.2e-35 1
ASPGD|ASPL0000002010 - symbol:AN6902 species:162425 "Emer... 351 4.7e-32 1
UNIPROTKB|G4MVM1 - symbol:MGG_08908 "mRNA turnover protei... 346 1.6e-31 1
UNIPROTKB|F1PCD5 - symbol:F1PCD5 "Uncharacterized protein... 333 3.8e-30 1
CGD|CAL0006176 - symbol:MRT4 species:5476 "Candida albica... 317 1.9e-28 1
UNIPROTKB|Q5AC00 - symbol:MRT4 "Potential rRNA processing... 317 1.9e-28 1
SGD|S000001492 - symbol:MRT4 "Protein involved in mRNA tu... 292 8.4e-26 1
TAIR|locus:2074623 - symbol:AT3G11250 species:3702 "Arabi... 130 2.1e-06 1
TAIR|locus:2083564 - symbol:AT3G09200 species:3702 "Arabi... 129 2.8e-06 1
TAIR|locus:2061231 - symbol:AT2G40010 species:3702 "Arabi... 124 1.1e-05 1
CGD|CAL0001932 - symbol:RPP0 species:5476 "Candida albica... 122 1.9e-05 1
POMBASE|SPCC18.14c - symbol:rpp0 "60S acidic ribosomal pr... 117 7.7e-05 1
GENEDB_PFALCIPARUM|PF11_0313 - symbol:PF11_0313 "ribosoma... 115 0.00014 1
UNIPROTKB|Q8II61 - symbol:PF11_0313 "60S ribosomal protei... 115 0.00014 1
>UNIPROTKB|E2RG17 [details] [associations]
symbol:MRTO4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] InterPro:IPR001790 Pfam:PF00466
GO:GO:0042254 GO:GO:0005840 CTD:51154 GeneTree:ENSGT00390000006238
KO:K14815 OMA:AWKHSRF EMBL:AAEX03001814 RefSeq:XP_544532.2
Ensembl:ENSCAFT00000024114 GeneID:487406 KEGG:cfa:487406
NextBio:20861004 Uniprot:E2RG17
Length = 240
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 128/219 (58%), Positives = 156/219 (71%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y +F+FSV NMRNSKLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
K SR FFGKNKVM ALG+S DE + N+H VS LKG+ GLLFTNR+K++V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPADEYKDNLHQVSKKLKGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
+ DFA++G +T V L GPL +FPHS+EPQLRQLGL T L +GVVTL DH VCK+GD
Sbjct: 121 EMDFARAGNKATFTVTLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDHEVCKEGD 180
Query: 181 VLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGTFENL 218
VLTPEQAR+ Y+W + + G F+ +
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVTIRYMW-DAQSGRFQQM 218
>MGI|MGI:1917152 [details] [associations]
symbol:Mrto4 "MRT4, mRNA turnover 4, homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001790
Pfam:PF00466 MGI:MGI:1917152 GO:GO:0005730 GO:GO:0031965
GO:GO:0042254 CTD:51154 eggNOG:COG0244 GeneTree:ENSGT00390000006238
HOGENOM:HOG000177263 HOVERGEN:HBG052510 KO:K14815 OMA:AWKHSRF
OrthoDB:EOG41C6X4 EMBL:AK011387 EMBL:BC005734 IPI:IPI00132578
RefSeq:NP_076025.1 UniGene:Mm.27871 UniGene:Mm.296860
UniGene:Mm.441201 ProteinModelPortal:Q9D0I8 SMR:Q9D0I8
STRING:Q9D0I8 PhosphoSite:Q9D0I8 PaxDb:Q9D0I8 PRIDE:Q9D0I8
Ensembl:ENSMUST00000102503 GeneID:69902 KEGG:mmu:69902
InParanoid:Q9D0I8 NextBio:330573 Bgee:Q9D0I8 CleanEx:MM_MRTO4
Genevestigator:Q9D0I8 GermOnline:ENSMUSG00000028741 Uniprot:Q9D0I8
Length = 239
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 129/221 (58%), Positives = 157/221 (71%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y +F+FSV NMRNSKLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
K SR FFGKNKVM ALG+S DE + N+H VS L+G+ GLLFTNR+K++V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
+ DFA++G +T V L GPL +FPHS+EPQLRQLGL T L KGVVTL D+ VCK+GD
Sbjct: 121 EMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180
Query: 181 VLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGTFENLLD 220
VLTPEQARI Y+W + + G F+ + D
Sbjct: 181 VLTPEQARILKLFGYEMAEFKVIIKYMW-DAQSGRFQQMDD 220
>UNIPROTKB|A4FV84 [details] [associations]
symbol:MRTO4 "mRNA turnover protein 4 homolog" species:9913
"Bos taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0031965
"nuclear membrane" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] InterPro:IPR001790 Pfam:PF00466 GO:GO:0005730
GO:GO:0031965 GO:GO:0042254 EMBL:BC123852 IPI:IPI00718277
RefSeq:NP_001076868.1 UniGene:Bt.22192 STRING:A4FV84 PRIDE:A4FV84
Ensembl:ENSBTAT00000015861 GeneID:509932 KEGG:bta:509932 CTD:51154
eggNOG:COG0244 GeneTree:ENSGT00390000006238 HOGENOM:HOG000177263
HOVERGEN:HBG052510 InParanoid:A4FV84 KO:K14815 OMA:AWKHSRF
OrthoDB:EOG41C6X4 NextBio:20869201 Uniprot:A4FV84
Length = 239
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 127/221 (57%), Positives = 157/221 (71%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y +F+FSV NMRNSKLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
K SR FFGKNKVM ALG+S DE + N+H VS L+G+ GLLFTNR+K++V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYT 120
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
+ D+A++G +T V L GPL +FPHS+EPQLRQLGL T L KGVVTL D+ VCK+GD
Sbjct: 121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180
Query: 181 VLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGTFENLLD 220
VLTPEQAR+ Y+W + + G F+ + D
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVSIKYMW-DAQSGRFQQMGD 220
>UNIPROTKB|Q9UKD2 [details] [associations]
symbol:MRTO4 "mRNA turnover protein 4 homolog" species:9606
"Homo sapiens" [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=IDA]
InterPro:IPR001790 Pfam:PF00466 GO:GO:0005730 EMBL:CH471134
GO:GO:0031965 GO:GO:0042254 EMBL:AL035413 CTD:51154 eggNOG:COG0244
HOGENOM:HOG000177263 HOVERGEN:HBG052510 KO:K14815 OMA:AWKHSRF
OrthoDB:EOG41C6X4 EMBL:AF173378 EMBL:AY303790 EMBL:AK024227
EMBL:AK027569 EMBL:BC003013 EMBL:BC006504 IPI:IPI00106491
RefSeq:NP_057267.2 UniGene:Hs.463797 ProteinModelPortal:Q9UKD2
SMR:Q9UKD2 IntAct:Q9UKD2 STRING:Q9UKD2 PhosphoSite:Q9UKD2
DMDM:51316541 SWISS-2DPAGE:Q9UKD2 PaxDb:Q9UKD2 PeptideAtlas:Q9UKD2
PRIDE:Q9UKD2 DNASU:51154 Ensembl:ENST00000330263 GeneID:51154
KEGG:hsa:51154 UCSC:uc001bbs.3 GeneCards:GC01P019578
HGNC:HGNC:18477 HPA:HPA026438 HPA:HPA026446 neXtProt:NX_Q9UKD2
PharmGKB:PA162396216 InParanoid:Q9UKD2 PhylomeDB:Q9UKD2
ChiTaRS:MRTO4 GenomeRNAi:51154 NextBio:54049 Bgee:Q9UKD2
CleanEx:HS_MRTO4 Genevestigator:Q9UKD2 GermOnline:ENSG00000053372
Uniprot:Q9UKD2
Length = 239
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 125/221 (56%), Positives = 156/221 (70%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y +F+FSV NMRNSKLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
K SR FFGKNKVM ALG+S DE + N+H VS L+G+ GLLFTNR+K++V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
+ D+A++G + V L GPL +FPHS+EPQLRQLGL T L +GVVTL D+ VCK+GD
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180
Query: 181 VLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGTFENLLD 220
VLTPEQAR+ Y+W + + G F+ + D
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVTIKYMW-DSQSGRFQQMGD 220
>UNIPROTKB|F1SUQ2 [details] [associations]
symbol:MRTO4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001790
Pfam:PF00466 GO:GO:0005730 GO:GO:0031965 GO:GO:0042254
GO:GO:0005840 CTD:51154 GeneTree:ENSGT00390000006238 KO:K14815
OMA:AWKHSRF EMBL:FP236131 RefSeq:NP_001230644.1 UniGene:Ssc.6624
Ensembl:ENSSSCT00000003877 GeneID:100511136 KEGG:ssc:100511136
Uniprot:F1SUQ2
Length = 241
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 127/221 (57%), Positives = 156/221 (70%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y +F+FSV NMRNSKLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKFLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
K SR FFGKNKVM ALG+S +E N+H VS L+G+ GLLFTNR+K++V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPCEEYRDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYG 120
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
+ D+A++G +T V L GPL +FPHS+EPQLRQLGL T L KGVVTL D+ VCK+GD
Sbjct: 121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTTLKKGVVTLLSDYEVCKEGD 180
Query: 181 VLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGTFENLLD 220
VLTPEQARI Y+W + + G F+ + D
Sbjct: 181 VLTPEQARILKLFGYEMAEFKVTIRYMW-DAQSGRFQEMGD 220
>ZFIN|ZDB-GENE-050417-142 [details] [associations]
symbol:mrto4 "mRNA turnover 4 homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] InterPro:IPR001790 Pfam:PF00466
ZFIN:ZDB-GENE-050417-142 GO:GO:0042254 GO:GO:0005840 CTD:51154
eggNOG:COG0244 HOGENOM:HOG000177263 HOVERGEN:HBG052510 KO:K14815
OrthoDB:EOG41C6X4 EMBL:BC092913 IPI:IPI00512586
RefSeq:NP_001017657.1 UniGene:Dr.105236 STRING:Q568C9 GeneID:550350
KEGG:dre:550350 InParanoid:Q568C9 NextBio:20879605
ArrayExpress:Q568C9 Uniprot:Q568C9
Length = 242
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 121/220 (55%), Positives = 154/220 (70%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKSKRDKK++L+KT KKGLE KQNL +EL K + Y +FVFSV+NMRN+KLKD+R W
Sbjct: 1 MPKSKRDKKISLTKTTKKGLEAKQNLIEELRKCADIYRYVFVFSVENMRNNKLKDIRTAW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
+ SRFFFGKNKVM ALGK DE + N+H +S L+G+ G+LFTN++KD+V +F ++
Sbjct: 61 RHSRFFFGKNKVMMIALGKGPTDEYKDNLHKLSRFLRGEVGVLFTNKTKDEVQEYFGNFK 120
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
+ D+A++G ++ V L EGPL +FPHS+EPQLRQLGL T L KG VTL KD VCK+GD
Sbjct: 121 EVDYARAGNTASMAVTLDEGPLDQFPHSMEPQLRQLGLPTALKKGAVTLIKDFEVCKEGD 180
Query: 181 VLTPEQARIXXXXXXXXXXXXXXXYLWYNKKEGTFENLLD 220
LTPEQARI +N + G FE L D
Sbjct: 181 TLTPEQARILKLFGFEMAEFKLSIKCMWNSESGEFEKLTD 220
>UNIPROTKB|F1P353 [details] [associations]
symbol:MRTO4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0031965 "nuclear membrane" evidence=IEA] InterPro:IPR001790
Pfam:PF00466 GO:GO:0005730 GO:GO:0031965 GO:GO:0042254
GO:GO:0005840 EMBL:AADN02040697 GeneTree:ENSGT00390000006238
OMA:AWKHSRF IPI:IPI00587586 Ensembl:ENSGALT00000006360
Uniprot:F1P353
Length = 249
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 123/228 (53%), Positives = 158/228 (69%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKSKRD+KV+L++T +KGLE KQ L EL + V+ Y +IF+FSV NMRN+KLKDVRN W
Sbjct: 8 MPKSKRDRKVSLTRTPRKGLEAKQALIAELRRCVDTYKHIFIFSVANMRNNKLKDVRNAW 67
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
K SR FFGKNKVM ALG+ E +N+H VS L+G+ GLLFTNR+K++V WF ++
Sbjct: 68 KHSRIFFGKNKVMMVALGREPSSEYRENLHQVSKHLRGEVGLLFTNRTKEEVDEWFSSFK 127
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
+ DFA++G +T V L GPL +FPHS+EPQLRQLGL T L KGVVTL D+ VCK+GD
Sbjct: 128 EVDFARAGNKATYTVSLDTGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 187
Query: 181 VLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGTFENLLDREKTPMD 227
+LTPEQAR+ +LW N + G F+ L+ E+ D
Sbjct: 188 ILTPEQARVLKLFGYEMAEFKVTIKFLW-NSETGDFQKLVGDEEDEED 234
>UNIPROTKB|E2QYG0 [details] [associations]
symbol:E2QYG0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] InterPro:IPR001790 Pfam:PF00466
GO:GO:0042254 GO:GO:0005840 GeneTree:ENSGT00390000006238
EMBL:AAEX03008678 Ensembl:ENSCAFT00000000827 OMA:FRSSEYS
Uniprot:E2QYG0
Length = 233
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 111/182 (60%), Positives = 134/182 (73%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MP SK DKKV+L+KT KKGLE KQNL +EL K V+ Y +F+FSV NMRNS+LKD+RN W
Sbjct: 1 MPTSKHDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSELKDIRNPW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
K SR FFGKNKVM ALG+S DE + N+H VS LKG+ GLLFTNR+K++ WF Y
Sbjct: 61 KHSRVFFGKNKVMMVALGRSPADEYKDNLHQVSKKLKGEVGLLFTNRTKEEANEWFTKYT 120
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
+ DFA +G +T V L GPL +FPHS+EPQLRQLGL T L +GVVTL DH VCK+ +
Sbjct: 121 EMDFAPAGNRATFTVTLHPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLPSDHQVCKRAE 180
Query: 181 VL 182
L
Sbjct: 181 PL 182
>FB|FBgn0033485 [details] [associations]
symbol:RpLP0-like "Ribosomal protein LP0-like" species:7227
"Drosophila melanogaster" [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006412 "translation" evidence=IC] [GO:0003735
"structural constituent of ribosome" evidence=IC] [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR001790 Pfam:PF00466 EMBL:AE013599 GO:GO:0042254
GO:GO:0005840 eggNOG:COG0244 GeneTree:ENSGT00390000006238 KO:K14815
OMA:AWKHSRF EMBL:AY061517 RefSeq:NP_610554.1 UniGene:Dm.12545
SMR:Q7K1Q7 IntAct:Q7K1Q7 STRING:Q7K1Q7 EnsemblMetazoa:FBtr0088425
GeneID:36058 KEGG:dme:Dmel_CG1381 UCSC:CG1381-RA CTD:36058
FlyBase:FBgn0033485 InParanoid:Q7K1Q7 OrthoDB:EOG44TMQV
GenomeRNAi:36058 NextBio:796627 Uniprot:Q7K1Q7
Length = 256
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 109/190 (57%), Positives = 144/190 (75%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MP+SKRDKKV+L+KT +KGL KQ + D++ V KY NIFVF VQNMRNS LKD+R +
Sbjct: 1 MPRSKRDKKVSLTKTDRKGLAWKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQEL 60
Query: 61 K-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVY 119
K +SRF FGKN+VM LG+++ +E+E +H +S L GQ GLLFT++SK++VL W + Y
Sbjct: 61 KKNSRFIFGKNRVMQIGLGRTKSEEVEPELHKLSKRLTGQVGLLFTDKSKEEVLEWAENY 120
Query: 120 EDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKG 179
++A+SGF++TE V L GPL +F HS+EP LR LGL T L KG+VTL+ D+TVC++G
Sbjct: 121 WAVEYARSGFVATETVTLPAGPLEDFAHSMEPHLRSLGLPTKLEKGIVTLYSDYTVCEEG 180
Query: 180 DVLTPEQARI 189
VLTPEQARI
Sbjct: 181 KVLTPEQARI 190
>UNIPROTKB|F1M970 [details] [associations]
symbol:F1M970 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005840 "ribosome" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001790
Pfam:PF00466 GO:GO:0042254 GO:GO:0005840
GeneTree:ENSGT00390000006238 IPI:IPI00779080
Ensembl:ENSRNOT00000055679 Uniprot:F1M970
Length = 232
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 115/216 (53%), Positives = 142/216 (65%)
Query: 3 KSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD 62
K KRDKKV+L+KT KKGLE KQNL EL K V+ Y +F+FS+ NMRNSKLKD+RN WK
Sbjct: 3 KCKRDKKVSLTKTAKKGLELKQNLI-ELWKCVDTYKYLFIFSMANMRNSKLKDIRNAWKH 61
Query: 63 SRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDE 122
SR FFG NKV+ ALG+S DE + N+H V L+G+ GLLFTNR K++V WF Y +
Sbjct: 62 SRKFFG-NKVIMVALGRSPSDEYKDNLHQVHKKLRGEVGLLFTNRRKEEVNEWFTKYTEM 120
Query: 123 DFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVL 182
DFA+ G V GPL +FPHS+EPQLRQLGL T L GVVTL D+ VCK+GDVL
Sbjct: 121 DFARGG----NKVSPDPGPLKQFPHSMEPQLRQLGLPTALKNGVVTLLSDYEVCKEGDVL 176
Query: 183 TPEQARIXXXXXXXXXXXXXXXYLWYNKKEGTFENL 218
TPEQAR+ ++ + G F+ +
Sbjct: 177 TPEQARVLKLFGYEMAESRVTIKFMWDAQSGRFQQM 212
>RGD|1311709 [details] [associations]
symbol:Mrto4 "mRNA turnover 4 homolog (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0005840 "ribosome"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR001790 Pfam:PF00466 RGD:1311709 GO:GO:0042254
GO:GO:0005840 GeneTree:ENSGT00390000006238 IPI:IPI00365290
Ensembl:ENSRNOT00000024326 UCSC:RGD:1311709 Uniprot:F1LTU4
Length = 203
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 103/186 (55%), Positives = 128/186 (68%)
Query: 36 KYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSA 95
KY +F+FSV NMRNSKLKD+RN WK SR FFGKNKVM ALG+S DE + N+H VS
Sbjct: 1 KY--LFIFSVANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKK 58
Query: 96 LKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQ 155
L+G+ GLLFTNR+K++V WF Y + DFA++G +T V L GPL +FPHS+EPQLRQ
Sbjct: 59 LRGEVGLLFTNRTKEEVNEWFTKYTEMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQ 118
Query: 156 LGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGT 214
LGL T L KGVVTL D+ VCK+GDVLTPEQAR+ Y+W + + G
Sbjct: 119 LGLPTALKKGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAEFKVTIKYMW-DAQSGR 177
Query: 215 FENLLD 220
F+ + D
Sbjct: 178 FQQMDD 183
>WB|WBGene00017347 [details] [associations]
symbol:F10E7.5 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR001790 Pfam:PF00466
GO:GO:0042254 GO:GO:0005840 eggNOG:COG0244
GeneTree:ENSGT00390000006238 HOGENOM:HOG000177263 KO:K14815
OMA:AWKHSRF EMBL:FO081111 PIR:T34209 RefSeq:NP_495470.1
ProteinModelPortal:Q19302 SMR:Q19302 STRING:Q19302 PaxDb:Q19302
EnsemblMetazoa:F10E7.5 GeneID:174168 KEGG:cel:CELE_F10E7.5
UCSC:F10E7.5 CTD:174168 WormBase:F10E7.5 InParanoid:Q19302
NextBio:882821 Uniprot:Q19302
Length = 220
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 99/219 (45%), Positives = 145/219 (66%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
M +S+RDK V+L+K KK + K NL +E+ +V++Y N+F+F++ NMR+++ +R +
Sbjct: 1 MARSRRDKNVSLTKVKKKTKDTKNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKY 60
Query: 61 KD-SRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVY 119
K+ SRFFFGKN V++ ALGK + DE +H S+ LKGQCGL+FTN SK +V F
Sbjct: 61 KENSRFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEA 120
Query: 120 EDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKG 179
+ED+A+ G ++TE V L EGP+ +F S+EPQLR+LGL T L+KGV+TL++ VCK+G
Sbjct: 121 SEEDYARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEG 180
Query: 180 DVLTPEQARIXXXXXXXXXXXXXXXYLWYNKKEGTFENL 218
+ LT EQA+I +NKK+G F+ L
Sbjct: 181 EPLTVEQAKILKHFEVKMSQFRLIFKAHWNKKDG-FKEL 218
>TAIR|locus:2032970 [details] [associations]
symbol:AT1G25260 "AT1G25260" species:3702 "Arabidopsis
thaliana" [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005840 "ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0022626 "cytosolic ribosome"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] InterPro:IPR001790 Pfam:PF00466
EMBL:CP002684 GO:GO:0042254 GO:GO:0022626 HOGENOM:HOG000177263
KO:K14815 OMA:AWKHSRF EMBL:AY045969 EMBL:AY079322 EMBL:AY088374
IPI:IPI00529475 RefSeq:NP_564226.1 UniGene:At.21571
ProteinModelPortal:Q94AK8 IntAct:Q94AK8 STRING:Q94AK8 PRIDE:Q94AK8
EnsemblPlants:AT1G25260.1 GeneID:839109 KEGG:ath:AT1G25260
TAIR:At1g25260 InParanoid:Q94AK8 PhylomeDB:Q94AK8
ProtClustDB:CLSN2687949 ArrayExpress:Q94AK8 Genevestigator:Q94AK8
Uniprot:Q94AK8
Length = 235
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 96/190 (50%), Positives = 132/190 (69%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKSKRD+ VTLSKT KKG E K+ + + + +AVEKY++++VFS +NMRN K K+ R +
Sbjct: 1 MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60
Query: 61 K-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVY 119
+ + +FF G NKVM ALG+S EDE+ I+ VS L+G GLL T+ K++V F+ Y
Sbjct: 61 RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120
Query: 120 EDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKG 179
ED DF+++G I+ E VELKEGPL +F H +EP LR+L + LNKG V L D VC++G
Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEG 180
Query: 180 DVLTPEQARI 189
L+P+ A I
Sbjct: 181 KQLSPKSAHI 190
>UNIPROTKB|J9NSQ8 [details] [associations]
symbol:MRTO4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] InterPro:IPR001790 Pfam:PF00466
GO:GO:0042254 GO:GO:0005840 GeneTree:ENSGT00390000006238
EMBL:AAEX03001814 Ensembl:ENSCAFT00000047569 Uniprot:J9NSQ8
Length = 193
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 96/172 (55%), Positives = 118/172 (68%)
Query: 48 MRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNR 107
MRNSKLKD+RN WK SR FFGKNKVM ALG+S DE + N+H VS LKG+ GLLFTNR
Sbjct: 1 MRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPADEYKDNLHQVSKKLKGEVGLLFTNR 60
Query: 108 SKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVV 167
+K++V WF Y + DFA++G +T V L GPL +FPHS+EPQLRQLGL T L +GVV
Sbjct: 61 TKEEVNEWFTKYTEMDFARAGNKATFTVTLDPGPLEQFPHSMEPQLRQLGLPTALKRGVV 120
Query: 168 TLFKDHTVCKKGDVLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGTFENL 218
TL DH VCK+GDVLTPEQAR+ Y+W + + G F+ +
Sbjct: 121 TLLSDHEVCKEGDVLTPEQARVLKLFGYEMAEFKVTIRYMW-DAQSGRFQQM 171
>DICTYBASE|DDB_G0276411 [details] [associations]
symbol:mrt4 "mRNA turnover protein 4" species:44689
"Dictyostelium discoideum" [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001790
Pfam:PF00466 dictyBase:DDB_G0276411 GO:GO:0005730
GenomeReviews:CM000151_GR GO:GO:0042254 EMBL:AAFI02000015
eggNOG:COG0244 KO:K14815 OMA:AWKHSRF RefSeq:XP_643104.1
STRING:Q86HD3 PRIDE:Q86HD3 EnsemblProtists:DDB0252706
GeneID:8620508 KEGG:ddi:DDB_G0276411 ProtClustDB:CLSZ2430892
Uniprot:Q86HD3
Length = 223
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 85/189 (44%), Positives = 130/189 (68%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
M KSKR+ V ++K K E+K+ L + V++Y I++F+ +NMRN+KLK VR +W
Sbjct: 1 MVKSKRNVVVNMTKVTKNPGEKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
S+F FGKNKV++ LGKS+EDE++ N+H ++ L+G+CGL FTN KD V +F Y
Sbjct: 61 STSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYS 120
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
++DF +SGF+S E + +KEGP+ HS+E LR LGL T L GV+ + +++T+C+ G
Sbjct: 121 EKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGV 180
Query: 181 VLTPEQARI 189
+TPEQ+++
Sbjct: 181 AVTPEQSQL 189
>POMBASE|SPBC11G11.03 [details] [associations]
symbol:mrt4 "mRNA turnover and ribosome assembly
protein Mrt4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000027 "ribosomal large subunit assembly" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0006402 "mRNA catabolic
process" evidence=ISO] InterPro:IPR001790 Pfam:PF00466
PomBase:SPBC11G11.03 GO:GO:0005730 EMBL:CU329671 GO:GO:0006402
GO:GO:0006364 GO:GO:0000027 eggNOG:COG0244 HOGENOM:HOG000177263
KO:K14815 OMA:AWKHSRF PIR:T39330 RefSeq:NP_595721.1 STRING:Q9USZ6
EnsemblFungi:SPBC11G11.03.1 GeneID:2539913 KEGG:spo:SPBC11G11.03
OrthoDB:EOG4KH643 NextBio:20801056 Uniprot:Q9USZ6
Length = 241
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 86/230 (37%), Positives = 131/230 (56%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKS+R K +TL++T KKG E K L + ++++ ++ +++F V NMRN+ LK +R+DW
Sbjct: 1 MPKSRRSKVLTLAQTEKKGHEGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
K SR F GK KVMA ALG + E+E +N+ ++ L G GLLFTN D+V+ +F+ +
Sbjct: 61 KGSRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFV 120
Query: 121 DEDFAKSGFISTEDVELKEGPL----PEFP--------HSIEPQLRQLGLQTNLNKGVVT 168
DFA++G ++ + GP+ + P H++EPQ+RQLG+ T L GVVT
Sbjct: 121 QNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVT 180
Query: 169 LFKDHTVCKKGDVLTPEQARIXXXXXXXXXXXXXXXYLWYNKKEGTFENL 218
L D +C +G L Q R+ +Y+KK + E L
Sbjct: 181 LLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLLGYYSKKGASVEFL 230
>ASPGD|ASPL0000002010 [details] [associations]
symbol:AN6902 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR001790 Pfam:PF00466 GO:GO:0042254 GO:GO:0005840
EMBL:BN001301 EMBL:AACD01000113 eggNOG:COG0244 HOGENOM:HOG000177263
KO:K14815 OMA:AWKHSRF OrthoDB:EOG4KH643 RefSeq:XP_664506.1
STRING:Q5AXS8 EnsemblFungi:CADANIAT00007704 GeneID:2870607
KEGG:ani:AN6902.2 Uniprot:Q5AXS8
Length = 246
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 82/182 (45%), Positives = 114/182 (62%)
Query: 1 MPKSKRDKKVTLSKTVKKG-LERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRND 59
MP+SKR + V SKT KK E+ + L + + VEKY+++FVFSV NMRN+ LKDVR +
Sbjct: 1 MPRSKRARIVHESKTAKKSHKEQTRRLYANIRECVEKYDHLFVFSVDNMRNTYLKDVRTE 60
Query: 60 WKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVY 119
+ DSR FFGK KVMA ALG + E E +N+H+++ L G GLLFT+R V +FD +
Sbjct: 61 FADSRLFFGKTKVMAVALGHNPETEAAENLHLLTPYLTGAVGLLFTSRDPASVTDYFDAF 120
Query: 120 EDEDFAKSGFISTEDVEL-------KEGPLP---EFP--HSIEPQLRQLGLQTNLNKGVV 167
DFA++G +T + + G +P + P H+IEP+LR+LG+ T L KG V
Sbjct: 121 RPLDFARAGTEATRSFSIPAGLVYSRAGEIPTSEDEPVSHTIEPELRKLGVPTRLVKGKV 180
Query: 168 TL 169
L
Sbjct: 181 ML 182
>UNIPROTKB|G4MVM1 [details] [associations]
symbol:MGG_08908 "mRNA turnover protein 4" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001790 Pfam:PF00466 GO:GO:0042254
GO:GO:0005840 EMBL:CM001232 KO:K14815 RefSeq:XP_003713937.1
EnsemblFungi:MGG_08908T0 GeneID:2679894 KEGG:mgr:MGG_08908
Uniprot:G4MVM1
Length = 251
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 80/182 (43%), Positives = 111/182 (60%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MPKSKR K V ++ KK E+K+ L + + V +Y ++FVFSV NMRN+ LKDVR +
Sbjct: 1 MPKSKRAKVVHMTNVAKKTREQKELLFTNIRECVPQYQHLFVFSVDNMRNNNLKDVRREL 60
Query: 61 K-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVY 119
DSR FFGK K+MA ALG++ EDE + +H ++S L G GL+FTNR ++L + D
Sbjct: 61 SGDSRMFFGKTKLMARALGQTAEDEQAEGLHKLTSHLAGTVGLIFTNRPASELLSYLDSI 120
Query: 120 EDEDFAKSGFISTEDVELKEGPL----PEFP--------HSIEPQLRQLGLQTNLNKGVV 167
DFA++G ++ D + G + E P HSIEP+LR+LG+ T L KG V
Sbjct: 121 TSVDFARAGAVAPRDFSIPPGVVYSTGGEVPQEYDVPLAHSIEPELRKLGVPTRLIKGRV 180
Query: 168 TL 169
L
Sbjct: 181 VL 182
>UNIPROTKB|F1PCD5 [details] [associations]
symbol:F1PCD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] InterPro:IPR001790 Pfam:PF00466
GO:GO:0042254 GO:GO:0005840 GeneTree:ENSGT00390000006238
EMBL:AAEX03016495 Ensembl:ENSCAFT00000014429 Uniprot:F1PCD5
Length = 197
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 81/189 (42%), Positives = 114/189 (60%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
+PKS+ +KKV+L+KT KKGLE K+NL +EL K V+ Y +F+FSV N++ +N W
Sbjct: 1 VPKSEHNKKVSLTKTAKKGLELKRNLIEELRKCVDMYY-LFIFSVANVK-------KNAW 52
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
K S FFGKNKVM ALG S ++ + N+H VS L+G+ L FTNR+K++V WF +
Sbjct: 53 KHSWMFFGKNKVMTVALGGSPFNDYKDNLHQVSKKLRGEVSLHFTNRTKEEVNGWFTKHM 112
Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
+ DF ++G T + L GPL + P S R++ Q VCK+G
Sbjct: 113 EMDFTRAGNQVTLTMSLDWGPLEQSPQSPWSHSREMCSQE--------------VCKEGR 158
Query: 181 VLTPEQARI 189
VLTP+QAR+
Sbjct: 159 VLTPKQARM 167
>CGD|CAL0006176 [details] [associations]
symbol:MRT4 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0035690 "cellular response to
drug" evidence=IMP] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0030687 "preribosome,
large subunit precursor" evidence=IEA] [GO:0000027 "ribosomal large
subunit assembly" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=IEA] InterPro:IPR001790 Pfam:PF00466
CGD:CAL0006176 GO:GO:0042254 GO:GO:0005840 GO:GO:0035690
EMBL:AACQ01000034 EMBL:AACQ01000033 eggNOG:COG0244
HOGENOM:HOG000177263 KO:K14815 RefSeq:XP_719113.1
RefSeq:XP_719230.1 STRING:Q5AC00 GeneID:3639102 GeneID:3639219
KEGG:cal:CaO19.12996 KEGG:cal:CaO19.5550 Uniprot:Q5AC00
Length = 230
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 77/201 (38%), Positives = 114/201 (56%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MP+SKR K VTL++T KKG E K L DE+ A++ + I+V ++R L+DVRNDW
Sbjct: 1 MPRSKRSKLVTLAQTEKKGKENKTRLFDEVRSALDTFKYIWVLQFDDIRTPVLQDVRNDW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
S+ GK KV+ ALG++ E+E + N+H +S +G GLLFT+ S + V +F Y
Sbjct: 61 VGSKLILGKRKVLQKALGETIEEEYKDNLHQLSKLCEGLPGLLFTDESPETVEAYFKAYS 120
Query: 121 DEDF--AKS----------GFISTEDVELK-EGPLPEFPHSIEPQLR-QLGLQTNLNKGV 166
+D+ AKS G + + ++ E +P HS+E LR +L + T + G
Sbjct: 121 KQDYSRAKSRAPIDFTIPAGIVYSRGGQISIEEDVP-MSHSLEETLRNKLKVPTKIKAGK 179
Query: 167 VTLFKDHTVCKKGDVLTPEQA 187
+ L + + VC KGDVL QA
Sbjct: 180 IILEEPYVVCNKGDVLDTRQA 200
>UNIPROTKB|Q5AC00 [details] [associations]
symbol:MRT4 "Potential rRNA processing factor"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0035690 "cellular response to
drug" evidence=IMP] InterPro:IPR001790 Pfam:PF00466 CGD:CAL0006176
GO:GO:0042254 GO:GO:0005840 GO:GO:0035690 EMBL:AACQ01000034
EMBL:AACQ01000033 eggNOG:COG0244 HOGENOM:HOG000177263 KO:K14815
RefSeq:XP_719113.1 RefSeq:XP_719230.1 STRING:Q5AC00 GeneID:3639102
GeneID:3639219 KEGG:cal:CaO19.12996 KEGG:cal:CaO19.5550
Uniprot:Q5AC00
Length = 230
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 77/201 (38%), Positives = 114/201 (56%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MP+SKR K VTL++T KKG E K L DE+ A++ + I+V ++R L+DVRNDW
Sbjct: 1 MPRSKRSKLVTLAQTEKKGKENKTRLFDEVRSALDTFKYIWVLQFDDIRTPVLQDVRNDW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
S+ GK KV+ ALG++ E+E + N+H +S +G GLLFT+ S + V +F Y
Sbjct: 61 VGSKLILGKRKVLQKALGETIEEEYKDNLHQLSKLCEGLPGLLFTDESPETVEAYFKAYS 120
Query: 121 DEDF--AKS----------GFISTEDVELK-EGPLPEFPHSIEPQLR-QLGLQTNLNKGV 166
+D+ AKS G + + ++ E +P HS+E LR +L + T + G
Sbjct: 121 KQDYSRAKSRAPIDFTIPAGIVYSRGGQISIEEDVP-MSHSLEETLRNKLKVPTKIKAGK 179
Query: 167 VTLFKDHTVCKKGDVLTPEQA 187
+ L + + VC KGDVL QA
Sbjct: 180 IILEEPYVVCNKGDVLDTRQA 200
>SGD|S000001492 [details] [associations]
symbol:MRT4 "Protein involved in mRNA turnover and ribosome
assembly" species:4932 "Saccharomyces cerevisiae" [GO:0042273
"ribosomal large subunit biogenesis" evidence=IMP;IPI] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=IMP] [GO:0070180 "LSU rRNA binding"
evidence=ISA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005622 "intracellular" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001790
Pfam:PF00466 SGD:S000001492 GO:GO:0005654 GO:GO:0005730
EMBL:BK006944 GO:GO:0030687 GO:GO:0000956 EMBL:S53418 GO:GO:0006364
GO:GO:0000027 EMBL:X61398 EMBL:S59773 eggNOG:COG0244
GeneTree:ENSGT00390000006238 HOGENOM:HOG000177263 KO:K14815
OMA:AWKHSRF OrthoDB:EOG4KH643 EMBL:Z28009 PIR:S30013
RefSeq:NP_012916.1 ProteinModelPortal:P33201 SMR:P33201
DIP:DIP-5283N IntAct:P33201 MINT:MINT-573561 STRING:P33201
PaxDb:P33201 PeptideAtlas:P33201 EnsemblFungi:YKL009W GeneID:853860
KEGG:sce:YKL009W CYGD:YKL009w NextBio:975109 Genevestigator:P33201
GermOnline:YKL009W GO:GO:0070180 Uniprot:P33201
Length = 236
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 69/230 (30%), Positives = 118/230 (51%)
Query: 1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
MP+SKR K VTL++T KKG E K+ + DE+ +A++ Y ++V + ++R L+++R W
Sbjct: 1 MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDTYRYVWVLHLDDVRTPVLQEIRTSW 60
Query: 61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
S+ GK KV+ ALG+ +E+E ++N++ +S G GLLFT+ + V +F Y
Sbjct: 61 AGSKLIMGKRKVLQKALGEKREEEYKENLYQLSKLCSGVTGLLFTDEDVNTVKEYFKSYV 120
Query: 121 DEDFAKSG------FISTEDVELKEG-PLP---EFP--HSIEPQLR-QLGLQTNLNKGVV 167
D+++ F E + G +P + P HS+EP +R + + T + G +
Sbjct: 121 RSDYSRPNTKAPLTFTIPEGIVYSRGGQIPAEEDVPMIHSLEPTMRNKFEIPTKIKAGKI 180
Query: 168 TLFKDHTVCKKGDVLTPEQARIXXXXXXXXXXXXXXXYLWYNKKEGTFEN 217
T+ + VC +G+ L QA I +Y+ T E+
Sbjct: 181 TIDSPYLVCTEGEKLDVRQALILKQFGIAASEFKVKVSAYYDNDSSTVES 230
>TAIR|locus:2074623 [details] [associations]
symbol:AT3G11250 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=ISS] [GO:0006414 "translational elongation"
evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0022626 "cytosolic ribosome" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005794 "Golgi apparatus" evidence=RCA]
InterPro:IPR001790 InterPro:IPR001813 Pfam:PF00428 Pfam:PF00466
EnsemblPlants:AT3G11250.1 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0016020 GO:GO:0009651 GO:GO:0042254 GO:GO:0003735
GO:GO:0022626 EMBL:AC073395 GO:GO:0006414 HOGENOM:HOG000210987
KO:K02941 ProtClustDB:CLSN2683388 EMBL:AY056150 EMBL:AY091201
EMBL:AY087728 IPI:IPI00523299 RefSeq:NP_187734.1 UniGene:At.17400
ProteinModelPortal:P57691 SMR:P57691 STRING:P57691 PRIDE:P57691
ProMEX:P57691 GeneID:820296 KEGG:ath:AT3G11250 TAIR:At3g11250
InParanoid:P57691 OMA:GGVREKK PhylomeDB:P57691
Genevestigator:P57691 GermOnline:AT3G11250 Uniprot:P57691
Length = 323
Score = 130 (50.8 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 42/170 (24%), Positives = 80/170 (47%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGK 79
E+K +L + +++Y I V + N+ +++L+++R + DS GKN +M ++
Sbjct: 8 EKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRI 67
Query: 80 SQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKE 139
E+ I + L+G GL+FT +V Y+ A+ G ++ DV ++
Sbjct: 68 HSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQP 127
Query: 140 GPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARI 189
G P S + L + T +NKG V + + K+GD + +A +
Sbjct: 128 GNTGLDP-SQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAAL 176
>TAIR|locus:2083564 [details] [associations]
symbol:AT3G09200 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840 "ribosome"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0006414
"translational elongation" evidence=IEA;ISS] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009507
"chloroplast" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0022626 "cytosolic ribosome" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0010043
"response to zinc ion" evidence=IEP] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0048046
"apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009664 "plant-type cell wall organization" evidence=RCA]
[GO:0042545 "cell wall modification" evidence=RCA]
InterPro:IPR001790 InterPro:IPR001813 Pfam:PF00428 Pfam:PF00466
EnsemblPlants:AT3G09200.1 GO:GO:0005886 GO:GO:0009506 GO:GO:0009507
GO:GO:0046686 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0010043 GO:GO:0048046 GO:GO:0009651 GO:GO:0009409
GO:GO:0005507 GO:GO:0042254 GO:GO:0003735 GO:GO:0022626
EMBL:AC011436 GO:GO:0006414 EMBL:AC009326 eggNOG:COG0244
HOGENOM:HOG000210987 KO:K02941 ProtClustDB:CLSN2683388
EMBL:AF370225 EMBL:AY059117 EMBL:AY086582 EMBL:Z26534
IPI:IPI00517961 RefSeq:NP_187531.1 UniGene:At.21866
ProteinModelPortal:Q42112 SMR:Q42112 STRING:Q42112 PaxDb:Q42112
PRIDE:Q42112 ProMEX:Q42112 GeneID:820076 KEGG:ath:AT3G09200
TAIR:At3g09200 InParanoid:Q42112 OMA:AVATEYT PhylomeDB:Q42112
Genevestigator:Q42112 GermOnline:AT3G09200 Uniprot:Q42112
Length = 320
Score = 129 (50.5 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 42/170 (24%), Positives = 80/170 (47%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGK 79
E+K +L + +++Y I V + N+ +++L+++R + DS GKN +M ++
Sbjct: 8 EKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRI 67
Query: 80 SQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKE 139
E+ I + L+G GL+FT +V Y+ A+ G ++ DV ++
Sbjct: 68 HSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQP 127
Query: 140 GPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARI 189
G P S + L + T +NKG V + + K+GD + +A +
Sbjct: 128 GNTGLDP-SQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAAL 176
>TAIR|locus:2061231 [details] [associations]
symbol:AT2G40010 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=ISS] [GO:0006414 "translational elongation"
evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0022626 "cytosolic ribosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] InterPro:IPR001790
InterPro:IPR001813 Pfam:PF00428 Pfam:PF00466
EnsemblPlants:AT2G40010.1 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0042254 GO:GO:0003735 GO:GO:0022626 EMBL:AF002109
GO:GO:0006414 eggNOG:COG0244 EMBL:BT001919 IPI:IPI00525504
PIR:B84824 RefSeq:NP_181530.1 UniGene:At.28353 UniGene:At.49578
ProteinModelPortal:O04204 SMR:O04204 IntAct:O04204 STRING:O04204
GeneID:818589 KEGG:ath:AT2G40010 TAIR:At2g40010
HOGENOM:HOG000210987 InParanoid:O04204 KO:K02941 OMA:APIFEKD
PhylomeDB:O04204 ProtClustDB:CLSN2683388 Genevestigator:O04204
GermOnline:AT2G40010 Uniprot:O04204
Length = 317
Score = 124 (48.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGK 79
E+K +L + + +Y+ I V + N+ +++L+++R + DS GKN +M ++ +
Sbjct: 9 EKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV-R 67
Query: 80 SQEDEIEKNIHV-VSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELK 138
D+ + + L+G GL+FT +V Y+ A+ G ++ DV ++
Sbjct: 68 IHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQ 127
Query: 139 EGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARI 189
G P S + L + T +NKG V + + KKGD + +A +
Sbjct: 128 PGNTGLDP-SQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAAL 177
>CGD|CAL0001932 [details] [associations]
symbol:RPP0 species:5476 "Candida albicans" [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0070180 "LSU rRNA binding" evidence=IEA] [GO:0000027 "ribosomal
large subunit assembly" evidence=IEA] InterPro:IPR001790
InterPro:IPR001813 Pfam:PF00428 Pfam:PF00466 CGD:CAL0001932
GO:GO:0042254 GO:GO:0005840 GO:GO:0003735 EMBL:AACQ01000024
GO:GO:0006414 eggNOG:COG0244 KO:K02941 RefSeq:XP_720309.1
RefSeq:XP_888730.1 STRING:Q5AFQ4 GeneID:3638023 GeneID:3704214
KEGG:cal:CaO19.7015 KEGG:cal:CaO19_7015 Uniprot:Q5AFQ4
Length = 312
Score = 122 (48.0 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 44/175 (25%), Positives = 86/175 (49%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYAL-G 78
E+K +L + +E+Y +IFV V N+ + ++ ++R + D+ GKN ++ A+ G
Sbjct: 6 EKKVQYFSKLRELLEEYKSIFVVGVDNVSSQQMHEIRKALRGDAVVLMGKNTMVRRAIRG 65
Query: 79 -KSQEDEIEKNIHVVSSALKGQCGLLFTN---RSKDDVLMWFDVYEDEDFAKSGFISTED 134
S+ E EK + + KG G +FTN +S D+++ V A++G ++ +D
Sbjct: 66 FLSELPEFEKLLPFI----KGNVGFIFTNGDLKSIRDIVVSNVVAAP---ARAGAVAPKD 118
Query: 135 VELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARI 189
V + G P + LG+ T + +G + + D V ++ + P +A +
Sbjct: 119 VWIPAGNTGMEPGKTS-FFQALGVPTKIARGTIEIVSDVKVVEQDAKVGPSEATL 172
>POMBASE|SPCC18.14c [details] [associations]
symbol:rpp0 "60S acidic ribosomal protein Rpp0
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002182
"cytoplasmic translational elongation" evidence=NAS] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0022626 "cytosolic ribosome"
evidence=NAS] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR001790 InterPro:IPR001813 Pfam:PF00428 Pfam:PF00466
PomBase:SPCC18.14c EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0042254 GO:GO:0003735 GO:GO:0022626 GO:GO:0002182
eggNOG:COG0244 HOGENOM:HOG000210987 KO:K02941 OMA:AYMHAFN
PIR:T41157 RefSeq:NP_588393.1 ProteinModelPortal:O74864 SMR:O74864
IntAct:O74864 STRING:O74864 PRIDE:O74864 EnsemblFungi:SPCC18.14c.1
GeneID:2538893 KEGG:spo:SPCC18.14c OrthoDB:EOG4Z39PT
NextBio:20800072 Uniprot:O74864
Length = 312
Score = 117 (46.2 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 44/173 (25%), Positives = 76/173 (43%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDS-RFFFGKNKVMAYALGK 79
E K ++L EKYN++FV ++ N+ + ++ VR + + GKN ++ A+
Sbjct: 6 ESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRG 65
Query: 80 SQED--EIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVEL 137
D E+E+ + VV +G G +FTN +V A+ I+ DV +
Sbjct: 66 IINDMPELERLLPVV----RGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFV 121
Query: 138 KEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKD-HTVCKKGDVLTPEQARI 189
G P + LG+ T + +G + + D H V K V P +A +
Sbjct: 122 PAGNTGMEPGKTS-FFQALGIPTKITRGTIEITSDVHLVSKDAKV-GPSEATL 172
>GENEDB_PFALCIPARUM|PF11_0313 [details] [associations]
symbol:PF11_0313 "ribosomal phosphoprotein P0"
species:5833 "Plasmodium falciparum" [GO:0022625 "cytosolic large
ribosomal subunit" evidence=ISS] InterPro:IPR001790
InterPro:IPR001813 Pfam:PF00428 Pfam:PF00466 GO:GO:0042254
GO:GO:0003735 EMBL:AE014186 GO:GO:0006414 GO:GO:0022625
HOGENOM:HOG000210987 KO:K02941 OMA:AYMHAFN ProtClustDB:PTZ00135
RefSeq:XP_001347984.1 ProteinModelPortal:Q8II61 IntAct:Q8II61
MINT:MINT-1569176 PRIDE:Q8II61 EnsemblProtists:PF11_0313:mRNA
GeneID:810860 KEGG:pfa:PF11_0313 EuPathDB:PlasmoDB:PF3D7_1130200
Uniprot:Q8II61
Length = 316
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 45/176 (25%), Positives = 86/176 (48%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGK 79
++KQ ++L +++Y+ I + V N+ ++++ VR + + GKN + AL K
Sbjct: 8 QKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTRIRTALKK 67
Query: 80 SQE--DEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDF---AKSGFISTED 134
+ + +IEK + +V K G +F KDD+ ++ D A+ G I+ D
Sbjct: 68 NLQAVPQIEKLLPLV----KLNMGFVFC---KDDLSEIRNIILDNKSPAPARLGVIAPID 120
Query: 135 VELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHT-VCKKGDVLTPEQARI 189
V + GP P S + LG+ T + KG + + ++H + K+G+ +T A +
Sbjct: 121 VFIPPGPTGMDP-SHTSFFQSLGISTKIVKGQIEI-QEHVHLIKQGEKVTASSATL 174
>UNIPROTKB|Q8II61 [details] [associations]
symbol:PF11_0313 "60S ribosomal protein P0" species:36329
"Plasmodium falciparum 3D7" [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISS] InterPro:IPR001790 InterPro:IPR001813
Pfam:PF00428 Pfam:PF00466 GO:GO:0042254 GO:GO:0003735 EMBL:AE014186
GO:GO:0006414 GO:GO:0022625 HOGENOM:HOG000210987 KO:K02941
OMA:AYMHAFN ProtClustDB:PTZ00135 RefSeq:XP_001347984.1
ProteinModelPortal:Q8II61 IntAct:Q8II61 MINT:MINT-1569176
PRIDE:Q8II61 EnsemblProtists:PF11_0313:mRNA GeneID:810860
KEGG:pfa:PF11_0313 EuPathDB:PlasmoDB:PF3D7_1130200 Uniprot:Q8II61
Length = 316
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 45/176 (25%), Positives = 86/176 (48%)
Query: 21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGK 79
++KQ ++L +++Y+ I + V N+ ++++ VR + + GKN + AL K
Sbjct: 8 QKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTRIRTALKK 67
Query: 80 SQE--DEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDF---AKSGFISTED 134
+ + +IEK + +V K G +F KDD+ ++ D A+ G I+ D
Sbjct: 68 NLQAVPQIEKLLPLV----KLNMGFVFC---KDDLSEIRNIILDNKSPAPARLGVIAPID 120
Query: 135 VELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHT-VCKKGDVLTPEQARI 189
V + GP P S + LG+ T + KG + + ++H + K+G+ +T A +
Sbjct: 121 VFIPPGPTGMDP-SHTSFFQSLGISTKIVKGQIEI-QEHVHLIKQGEKVTASSATL 174
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 243 216 0.00088 112 3 11 22 0.41 33
32 0.50 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 599 (64 KB)
Total size of DFA: 177 KB (2103 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.10u 0.08s 21.18t Elapsed: 00:00:03
Total cpu time: 21.10u 0.08s 21.18t Elapsed: 00:00:04
Start: Thu Aug 15 14:51:48 2013 End: Thu Aug 15 14:51:52 2013