BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15724
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4S|A Chain A, Solution Structure Of Zinc Finger Hit Domain In Protein
Fon
Length = 59
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 41 GDCEVCAIEPAKYTCPKCELKTCCLNCVNIH 71
G C ++PA+YTCP+C C L C H
Sbjct: 15 GFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 88 PLQKFSNL-----------ELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHIL 136
PL +F N+ E Q + L EV+ L KY + S + ++ PLH++
Sbjct: 280 PLAEFDNVLLTPHIGGSTQEAQENIGL--EVAGKLIKYSDNGSTLSAVNFPEVSLPLHVV 337
Query: 137 RKYAYM---RKTQVKFLPKLFTQHKINTSCVY 165
R+ ++ R + L K+F + +N + Y
Sbjct: 338 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQY 369
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 77 CDGIRNKVKFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHIL 136
D + N + FI LQK +ELQ + LEEV LF+ + K S P PL +
Sbjct: 1907 LDTVTNVLNFIKLQKIDIIELQKSLS-LEEVEGHLFEIIDEASKKSAVK----PRPLKLE 1961
Query: 137 RKYA 140
R +A
Sbjct: 1962 RGFA 1965
>pdb|2YQQ|A Chain A, Solution Structure Of The Zf-Hit Domain In Zinc Finger
Hit Domain-Containing Protein 3 (Trip-3)
Length = 56
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 43 CEVCAIEPAKYTCPKCELKTCCLNCVNIHKRE 74
C +C +E KY CP C + C + C HK +
Sbjct: 15 CVIC-LEKPKYRCPACRVPYCSVVCFRKHKEQ 45
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 19/143 (13%)
Query: 174 EWVFVSGNLKHVDEKLIDSTRLCIPLTAHLDQPDLA---FYKAADQPDLAFYKAAGINGL 230
E++ +SG + +D + I + +P +A AD+ D AF+ G N +
Sbjct: 473 EYIQMSG---RAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFH--LGYNMI 527
Query: 231 LILMKVERSSKFYILDHTLSIAENLKNKCIIEFPIF-YVIFNYEKDMFDIEYTDVGEAKD 289
L LM+VE S ++L+H+ +N +I P+ + +KD IE D +
Sbjct: 528 LNLMRVEGISPEFMLEHSFFQFQN-----VISVPVMEKKLAELKKDFDGIEVED-----E 577
Query: 290 PRIQSHSQIENGPKEKLDHVKQT 312
++ + +IE K + V+Q
Sbjct: 578 ENVKEYHEIEQAIKGYREDVRQV 600
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 19/143 (13%)
Query: 174 EWVFVSGNLKHVDEKLIDSTRLCIPLTAHLDQPDLA---FYKAADQPDLAFYKAAGINGL 230
E++ +SG + +D + I + +P +A AD+ D AF+ G N +
Sbjct: 571 EYIQMSG---RAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFH--LGYNMI 625
Query: 231 LILMKVERSSKFYILDHTLSIAENLKNKCIIEFPIF-YVIFNYEKDMFDIEYTDVGEAKD 289
L LM+VE S ++L+H+ +N +I P+ + +KD IE D +
Sbjct: 626 LNLMRVEGISPEFMLEHSFFQFQN-----VISVPVMEKKLAELKKDFDGIEVED-----E 675
Query: 290 PRIQSHSQIENGPKEKLDHVKQT 312
++ + +IE K + V+Q
Sbjct: 676 ENVKEYHEIEQAIKGYREDVRQV 698
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,412,563
Number of Sequences: 62578
Number of extensions: 432548
Number of successful extensions: 834
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 7
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)