BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15724
(360 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NWK9|BCD1_HUMAN Box C/D snoRNA protein 1 OS=Homo sapiens GN=ZNHIT6 PE=1 SV=1
Length = 470
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 133/250 (53%), Gaps = 17/250 (6%)
Query: 28 NLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFI 87
N P ++K++ + CE C E AKY CP+C +C L CV HK EL C+G+R+K +I
Sbjct: 206 NHPVGCKRKLA-MSRCETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCNGVRDKTAYI 264
Query: 88 PLQKFSNLELQNDFNLLEEVSNSLFKYKRDP-VKNSVSMYNKLPHPLHILRKYAYMRKTQ 146
+Q+F+ + L +D+ LE+V+ + RD +K +S NK ++ ++ A +
Sbjct: 265 SIQQFTEMNLLSDYRFLEDVARTADHISRDAFLKRPIS--NKY---MYFMKNRARRQGIN 319
Query: 147 VKFLPKLFTQHKINTSCV--YKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLD 204
+K LP FT+ K N++ K W V+ F +++++++ D + L ++D
Sbjct: 320 LKLLPNGFTKRKENSTFFDKKKQQFCWHVKLQFPQSQAEYIEKRVPDDKTINEILKPYID 379
Query: 205 QPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSS----KFYILDHTLSIAENLKNKCI 260
P+ + Q A+ ++ G+ ILMK+E ++Y LD S+ +NL+NK I
Sbjct: 380 -PEKS-DPVIRQRLKAYIRSQ--TGVQILMKIEYMQQNLVRYYELDPYKSLLDNLRNKVI 435
Query: 261 IEFPIFYVIF 270
IE+P +V+
Sbjct: 436 IEYPTLHVVL 445
>sp|Q5RF97|BCD1_PONAB Box C/D snoRNA protein 1 OS=Pongo abelii GN=ZNHIT6 PE=2 SV=1
Length = 465
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 132/250 (52%), Gaps = 17/250 (6%)
Query: 28 NLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFI 87
N P ++K++ + CE C E AKY CP+C +C L CV HK EL C+G+R+K +I
Sbjct: 201 NHPVGCKRKLA-MSRCETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCNGVRDKTAYI 259
Query: 88 PLQKFSNLELQNDFNLLEEVSNSLFKYKRDP-VKNSVSMYNKLPHPLHILRKYAYMRKTQ 146
+Q+F+ + L +D+ LE+V+ + RD +K +S + ++ ++ A +
Sbjct: 260 SIQQFTEMNLLSDYRFLEDVARTADHISRDAFLKRPISNKH-----MYFMKNRARRQGIN 314
Query: 147 VKFLPKLFTQHKINTSCV--YKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLD 204
+K LP FT+ K N++ K W V+ F +++++++ D + L ++D
Sbjct: 315 LKLLPNGFTKRKENSTFFDKKKQQFCWHVKLQFPQSQAEYIEKRVPDDKTINEILKPYID 374
Query: 205 QPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSS----KFYILDHTLSIAENLKNKCI 260
P+ + Q A+ ++ G+ ILMK+E ++Y LD S+ +NL+NK I
Sbjct: 375 -PEKS-DPVIRQRLKAYIRSQ--TGVQILMKIEYMQQNLVRYYELDPYKSLLDNLRNKVI 430
Query: 261 IEFPIFYVIF 270
IE+P +V+
Sbjct: 431 IEYPTLHVVL 440
>sp|Q3UFB2|BCD1_MOUSE Box C/D snoRNA protein 1 OS=Mus musculus GN=Znhit6 PE=2 SV=2
Length = 460
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 24/242 (9%)
Query: 40 LGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQN 99
L CE C E AKY CP+C +C L CV HK +L C G+R+K ++ LQ+F+ + L +
Sbjct: 208 LSRCETCGTEEAKYRCPRCMRFSCSLPCVKKHKADLTCSGVRDKTAYVSLQQFTEMNLLS 267
Query: 100 DFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHP---LHILRKYAYMRKTQVKFLPKLFTQ 156
D+ LE+V+ + K RD + K P L ++ A + ++ LP F++
Sbjct: 268 DYRFLEDVARTADKVSRD-------TFLKRPKRKKYLFFMKNRARKQGIYLRLLPNGFSK 320
Query: 157 HKINTSCV--YKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLD--QPDLAFYK 212
K N++ K W V+ F +++++++ D + L ++D + D +
Sbjct: 321 RKENSTVFDHRKQQFCWHVKLQFPQSQAEYIEKRVPDDKTINEILKPYIDPEESDPVIRQ 380
Query: 213 AADQPDLAFYKAAGINGLLILMKVERSSKFYILDHTL----SIAENLKNKCIIEFPIFYV 268
L Y A G+ ILM+VE + I H L S+++NLK+K IIE+P +V
Sbjct: 381 R-----LKAY-AQSQTGVQILMRVENMQQNMIRYHELDPYKSLSDNLKDKVIIEYPTLHV 434
Query: 269 IF 270
+
Sbjct: 435 VL 436
>sp|O74906|BCD1_SCHPO Putative box C/D snoRNA protein SPCC613.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC613.07 PE=1 SV=1
Length = 345
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 39 RLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQ 98
RLG C C +KY CP+C+ + CCL C HKR +C G R+ F+P K N L
Sbjct: 5 RLGICSTCQKNASKYRCPRCDSRFCCLECNLEHKRLTKCSGERDPATFVPKSKLVN-HLN 63
Query: 99 NDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHK 158
+DFN L V L K + S + N+ L++ +KF P + +
Sbjct: 64 SDFNFLSGVER-LINRKEN---GSHQVSNRAERNRLQLKRSLERAGINIKFAPPSNKKRR 119
Query: 159 INTSCVYKNN--LYWRVEW 175
+N + K + + W +EW
Sbjct: 120 LNRTHYDKKSHLIKWSIEW 138
>sp|P38772|BCD1_YEAST Box C/D snoRNA protein 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BCD1 PE=1 SV=1
Length = 366
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 106/289 (36%), Gaps = 66/289 (22%)
Query: 43 CEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVK-FIPLQKFS-------- 93
C VC I+ KY CP+C ++TC L C HK C G + K +I +
Sbjct: 5 CGVCGIKEFKYKCPRCLVQTCSLECSKKHKTRDNCSGQTHDPKEYISSEALKQADDDKHE 64
Query: 94 -NLELQNDFNLLEEVSNSLFKYKRD----------PVKNSVSMYNKLPHPL--------- 133
N +Q D+N L ++ + K D PV S + K + +
Sbjct: 65 RNAYVQRDYNYLTQLKRMVHVQKMDARMKNKRVLGPVGGHNSNFKKRRYDIDEDDRDSTE 124
Query: 134 --HILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKN-NLY-WRVEWVFVSGN-------- 181
I+R R LPK + N S K +L+ W VEW+
Sbjct: 125 CQRIIR-----RGVNCLMLPKGMQRSSQNRSKWDKTMDLFVWSVEWILCPMQEKGEKKEL 179
Query: 182 LKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAA------DQPDLAFYKAAGI-----NGL 230
KHV ++ ++ L + ++ Q FY+ A + D + K +GL
Sbjct: 180 FKHVSHRIKETDFLVQGMGKNVFQKCCEFYRLAGTSSCIEGEDGSETKEERTQILQKSGL 239
Query: 231 LILMKVERSSKFYILD---------HTLSIAENLKNKCIIEFPIFYVIF 270
K + +I+D H I E LKN +IEFP +V
Sbjct: 240 KFYTKTFPYNTTHIMDSKKLVELAIHEKCIGELLKNTTVIEFPTIFVAM 288
>sp|Q9UHR6|ZNHI2_HUMAN Zinc finger HIT domain-containing protein 2 OS=Homo sapiens
GN=ZNHIT2 PE=1 SV=1
Length = 403
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 41 GDCEVCAIEPAKYTCPKCELKTCCLNCVNIHK 72
G C ++PA+YTCP+C C L C H
Sbjct: 8 GFCPAGEVQPARYTCPRCNAPYCSLRCYRTHG 39
>sp|Q2TBW5|ZNHI2_BOVIN Zinc finger HIT domain-containing protein 2 OS=Bos taurus
GN=ZNHIT2 PE=2 SV=1
Length = 399
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 41 GDCEVCAIEPAKYTCPKCELKTCCLNCVNIH 71
G C +PA+YTCP+C + C L C H
Sbjct: 8 GFCPTGEAQPARYTCPRCNVPYCSLRCYRAH 38
>sp|O36031|YEKJ_SCHPO Uncharacterized zinc-finger protein C4F10.19c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC4F10.19c PE=4 SV=1
Length = 154
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 40 LGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKF 86
+ C +C KY CPKC C L C IH+ + E N F
Sbjct: 1 MTTCSICNESEIKYKCPKCSFPYCSLPCWKIHQSQCETVNDNNTTTF 47
>sp|Q9QY66|ZNHI2_MOUSE Zinc finger HIT domain-containing protein 2 OS=Mus musculus
GN=Znhit2 PE=2 SV=2
Length = 399
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 41 GDCEVCAIEPAKYTCPKCELKTCCLNCVNIH 71
G C PA+YTCP+C C L C H
Sbjct: 8 GFCPAGEALPARYTCPRCNAPYCSLRCYRAH 38
>sp|Q2J735|PNP_FRASC Polyribonucleotide nucleotidyltransferase OS=Frankia sp. (strain
CcI3) GN=pnp PE=3 SV=1
Length = 729
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 255 LKNKCIIEFPIFYVIFNYEKDMFDIEYTDVGE--AKDPRIQSHSQIENGPKEKLDHVKQT 312
L K EFP+F +Y D+ D +G+ + RI ++ EN +LD V+Q
Sbjct: 248 LAAKPAREFPVF---IDYHDDVLDALSAAIGDELSAALRIPGKAEREN----ELDRVRQL 300
Query: 313 EGEDVHYDCFENEESIDVSSEDTSEIIVEPRTITDD--------SEYSSISYEYDY 360
E V E+ I + ++ +V R +T+ +E ++S E DY
Sbjct: 301 AAEKVASQFEGREKEIGAAYRALTKKLVRSRIVTESVRIDGRSTTEIRALSAEVDY 356
>sp|P08314|ATI2_HHV1F Alpha trans-inducing factor 78 kDa protein OS=Human herpesvirus 1
(strain F) GN=UL46 PE=3 SV=1
Length = 715
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 133 LHILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKNNLYWRVEWVFVSGNLKHVDEKLIDS 192
LH +++Y + + P T ++N Y + LY W+ + + KHV +L S
Sbjct: 195 LHRIQQYMFFMRPADPSRPSTDTALRLNELLAYVSVLYRWASWMLWTTD-KHVCHRLSPS 253
Query: 193 TRLCIPLTAHLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSSKFYILDHTLSIA 252
R +PL + P F + D+ +G G + M + R++ +L H +A
Sbjct: 254 NRRFLPLGGSPEAPAETFARHLDR------GPSGTTGSMQCMAL-RAAVSDVLGHLTRLA 306
>sp|P10230|ATI2_HHV11 Alpha trans-inducing factor 78 kDa protein OS=Human herpesvirus 1
(strain 17) GN=UL46 PE=1 SV=2
Length = 718
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 133 LHILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKNNLYWRVEWVFVSGNLKHVDEKLIDS 192
LH +++Y + + P T ++N Y + LY W+ + + KHV +L S
Sbjct: 195 LHRIQQYMFFMRPADPSRPSTDTALRLNELLAYVSVLYRWASWMLWTTD-KHVCHRLSPS 253
Query: 193 TRLCIPLTAHLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSSKFYILDHTLSIA 252
R +PL + P F + D+ +G G + M + R++ +L H +A
Sbjct: 254 NRRFLPLGGSPEAPAETFARHLDR------GPSGTTGSMQCMAL-RAAVSDVLGHLTRLA 306
>sp|P07149|FAS1_YEAST Fatty acid synthase subunit beta OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=FAS1 PE=1 SV=2
Length = 2051
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 77 CDGIRNKVKFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHIL 136
D + N + FI LQK +ELQ + LEEV LF+ + K S P PL +
Sbjct: 1907 LDTVTNVLNFIKLQKIDIIELQKSLS-LEEVEGHLFEIIDEASKKSAVK----PRPLKLE 1961
Query: 137 RKYA 140
R +A
Sbjct: 1962 RGFA 1965
>sp|Q3IU54|DP2L_NATPD DNA polymerase II large subunit OS=Natronomonas pharaonis (strain
DSM 2160 / ATCC 35678) GN=polC PE=3 SV=1
Length = 1198
Score = 32.3 bits (72), Expect = 5.4, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 23/118 (19%)
Query: 27 QNLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKT----CCLNCVNIH----------- 71
Q+ P EVE +V R C C E + CP CE T C +C NI
Sbjct: 685 QDTPGEVEVQVGRR-QCPACDTETFRARCPDCESVTDPRYVCYDC-NIDVDPDESGRAIC 742
Query: 72 -KRELECDGIRNKVKFIPLQKFSNL----ELQNDFNLLEEVSNSLFKYK-RDPVKNSV 123
E E D ++N+ + + S L E +N F++L+ V ++K +P++ V
Sbjct: 743 PNCEREADAVQNRTVNVHEEYRSALSNVGERENAFDVLKGVKGLSSEHKVPEPIEKGV 800
>sp|Q5VVM6|CCD30_HUMAN Coiled-coil domain-containing protein 30 OS=Homo sapiens GN=CCDC30
PE=2 SV=1
Length = 783
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 164 VYKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTA 201
+ ++N + E + + LKH +KL+DST++C LTA
Sbjct: 272 LKQHNSLLQEENIKIKIELKHAQQKLLDSTKMCSSLTA 309
>sp|P46973|HIT1_YEAST Protein HIT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HIT1 PE=1 SV=1
Length = 164
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 37 VSRLGDCEVCAIEPAKYTCPKCELKTCCLNC 67
VS C +C KY CPKC ++ C L C
Sbjct: 2 VSSAVKCGICRGVDGKYKCPKCGVRYCSLKC 32
>sp|Q8W257|PFI_PTIFI Polyenoic fatty acid isomerase OS=Ptilota filicina PE=1 SV=1
Length = 500
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 128 KLPHPLHILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKNNLY 170
K+P+PL+++RK + T V+ KLF I+TS N L+
Sbjct: 130 KVPNPLNLVRKVSTQVSTYVEVWKKLFNMDFIDTSTKRTNRLF 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,692,162
Number of Sequences: 539616
Number of extensions: 5812337
Number of successful extensions: 14113
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 14092
Number of HSP's gapped (non-prelim): 42
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)